Your job contains 1 sequence.
>psy10057
MGRKHPAPEPQLDEEPVGKKIRSEESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLN
GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLDVS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy10057
(99 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1NU16 - symbol:SF3A1 "Uncharacterized protein"... 212 3.8e-16 1
UNIPROTKB|E2RDL8 - symbol:SF3A1 "Uncharacterized protein"... 197 1.5e-14 1
UNIPROTKB|E9PAW1 - symbol:SF3A1 "Splicing factor 3A subun... 195 2.2e-14 1
UNIPROTKB|I3LQZ7 - symbol:I3LQZ7 "Uncharacterized protein... 195 2.4e-14 1
UNIPROTKB|A2VDN6 - symbol:SF3A1 "Splicing factor 3A subun... 195 2.5e-14 1
UNIPROTKB|Q15459 - symbol:SF3A1 "Splicing factor 3A subun... 195 2.5e-14 1
UNIPROTKB|F1RFD3 - symbol:SF3A1 "Splicing factor 3A subun... 195 2.5e-14 1
MGI|MGI:1914715 - symbol:Sf3a1 "splicing factor 3a, subun... 191 6.8e-14 1
RGD|1311477 - symbol:Sf3a1 "splicing factor 3a, subunit 1... 191 6.8e-14 1
ZFIN|ZDB-GENE-030616-156 - symbol:sf3a1 "splicing factor ... 177 2.1e-12 1
FB|FBgn0038464 - symbol:CG16941 species:7227 "Drosophila ... 164 5.2e-11 1
WB|WBGene00004188 - symbol:prp-21 species:6239 "Caenorhab... 113 1.2e-05 1
UNIPROTKB|G5ECL3 - symbol:prp-21 "Protein PRP-21" species... 113 1.2e-05 1
>UNIPROTKB|F1NU16 [details] [associations]
symbol:SF3A1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005684 "U2-type
spliceosomal complex" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000061 InterPro:IPR000626
Pfam:PF00240 Pfam:PF01805 PROSITE:PS50128 SMART:SM00213
SMART:SM00648 GO:GO:0003723 InterPro:IPR019955 PROSITE:PS50053
GO:GO:0000398 GO:GO:0071013 SUPFAM:SSF109905 GO:GO:0005684
GeneTree:ENSGT00570000079144 InterPro:IPR022030 Pfam:PF12230
OMA:GMPPAKQ EMBL:AADN02050496 IPI:IPI00651567
Ensembl:ENSGALT00000012894 Uniprot:F1NU16
Length = 790
Score = 212 (79.7 bits), Expect = 3.8e-16, P = 3.8e-16
Identities = 42/90 (46%), Positives = 56/90 (62%)
Query: 8 PEPQLDEEPVGKKIRSEESLIPEQVFLSKMAXXXXXXXXXXXXMTDKPEWKLNGQTLSLS 67
P P +++EPV KK++SE+SLIPE+ FL + M DK EWKLNGQ L +
Sbjct: 669 PPPPMEDEPVSKKLKSEDSLIPEEEFLQEQGMAQSQSKSVPN-MQDKTEWKLNGQVLVFT 727
Query: 68 LDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
L L V+ +K +IH+ GMPAGKQKL +
Sbjct: 728 LPLSDQVSVIKVKIHEATGMPAGKQKLQYE 757
>UNIPROTKB|E2RDL8 [details] [associations]
symbol:SF3A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005684 "U2-type spliceosomal complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR000061
InterPro:IPR000626 Pfam:PF00240 Pfam:PF01805 PROSITE:PS50128
SMART:SM00213 SMART:SM00648 GO:GO:0003723 InterPro:IPR019955
PROSITE:PS50053 GO:GO:0000398 GO:GO:0071013 SUPFAM:SSF109905
GO:GO:0005684 GeneTree:ENSGT00570000079144 InterPro:IPR022030
Pfam:PF12230 KO:K12825 CTD:10291 OMA:GMPPAKQ EMBL:AAEX03014797
RefSeq:XP_534733.2 ProteinModelPortal:E2RDL8
Ensembl:ENSCAFT00000020076 GeneID:477538 KEGG:cfa:477538
NextBio:20852999 Uniprot:E2RDL8
Length = 793
Score = 197 (74.4 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 39/90 (43%), Positives = 55/90 (61%)
Query: 8 PEPQLDEEPVGKKIRSEESLIPEQVFLSKMAXXXXXXXXXXXXMTDKPEWKLNGQTLSLS 67
P P +++EP KK+++E+SL+PE+ FL + M DK EWKLNGQ L +
Sbjct: 672 PPPPMEDEPASKKLKTEDSLVPEEEFLRRNKGPVSIKVQVPN-MQDKTEWKLNGQVLVFT 730
Query: 68 LDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
L L V+ +K +IH+ GMPAGKQKL +
Sbjct: 731 LPLTDQVSVIKVKIHEATGMPAGKQKLQYE 760
>UNIPROTKB|E9PAW1 [details] [associations]
symbol:SF3A1 "Splicing factor 3A subunit 1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000061
InterPro:IPR000626 Pfam:PF00240 Pfam:PF01805 PROSITE:PS50128
SMART:SM00213 SMART:SM00648 GO:GO:0005634 GO:GO:0003723
GO:GO:0006396 InterPro:IPR019955 PROSITE:PS50053 SUPFAM:SSF109905
InterPro:IPR022030 Pfam:PF12230 EMBL:AC004997 KO:K12825 CTD:10291
RefSeq:NP_001005409.1 UniGene:Hs.406277 UniGene:Hs.505597
DNASU:10291 GeneID:10291 KEGG:hsa:10291 HGNC:HGNC:10765
ChiTaRS:SF3A1 GenomeRNAi:10291 NextBio:39000 IPI:IPI00470590
ProteinModelPortal:E9PAW1 SMR:E9PAW1 PRIDE:E9PAW1
Ensembl:ENST00000439242 UCSC:uc021wnt.1 ArrayExpress:E9PAW1
Bgee:E9PAW1 Uniprot:E9PAW1
Length = 728
Score = 195 (73.7 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 39/90 (43%), Positives = 55/90 (61%)
Query: 8 PEPQLDEEPVGKKIRSEESLIPEQVFLSKMAXXXXXXXXXXXXMTDKPEWKLNGQTLSLS 67
P P +++EP KK+++E+SL+PE+ FL + M DK EWKLNGQ L +
Sbjct: 607 PPPPMEDEPTSKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPN-MQDKTEWKLNGQVLVFT 665
Query: 68 LDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
L L V+ +K +IH+ GMPAGKQKL +
Sbjct: 666 LPLTDQVSVIKVKIHEATGMPAGKQKLQYE 695
>UNIPROTKB|I3LQZ7 [details] [associations]
symbol:I3LQZ7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000061 InterPro:IPR000626
Pfam:PF00240 Pfam:PF01805 PROSITE:PS50128 SMART:SM00213
SMART:SM00648 GO:GO:0003723 GO:GO:0006396 InterPro:IPR019955
PROSITE:PS50053 SUPFAM:SSF109905 GeneTree:ENSGT00570000079144
InterPro:IPR022030 Pfam:PF12230 Ensembl:ENSSSCT00000031961
OMA:TEADANI Uniprot:I3LQZ7
Length = 757
Score = 195 (73.7 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 39/90 (43%), Positives = 55/90 (61%)
Query: 8 PEPQLDEEPVGKKIRSEESLIPEQVFLSKMAXXXXXXXXXXXXMTDKPEWKLNGQTLSLS 67
P P +++EP KK+++E+SL+PE+ FL + M DK EWKLNGQ L +
Sbjct: 636 PPPPMEDEPASKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPN-MQDKTEWKLNGQVLVFT 694
Query: 68 LDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
L L V+ +K +IH+ GMPAGKQKL +
Sbjct: 695 LPLTDQVSVIKVKIHEATGMPAGKQKLQYE 724
>UNIPROTKB|A2VDN6 [details] [associations]
symbol:SF3A1 "Splicing factor 3A subunit 1" species:9913
"Bos taurus" [GO:0005684 "U2-type spliceosomal complex"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000061
InterPro:IPR000626 Pfam:PF00240 Pfam:PF01805 PROSITE:PS50128
SMART:SM00213 SMART:SM00648 GO:GO:0003723 InterPro:IPR019955
PROSITE:PS50053 GO:GO:0000398 GO:GO:0071013 SUPFAM:SSF109905
GO:GO:0005684 eggNOG:NOG300902 GeneTree:ENSGT00570000079144
InterPro:IPR022030 Pfam:PF12230 KO:K12825 HOGENOM:HOG000238941
EMBL:BC133328 IPI:IPI00687512 RefSeq:NP_001074979.1 UniGene:Bt.7260
ProteinModelPortal:A2VDN6 SMR:A2VDN6 STRING:A2VDN6 PRIDE:A2VDN6
Ensembl:ENSBTAT00000004398 GeneID:504381 KEGG:bta:504381 CTD:10291
HOVERGEN:HBG059993 InParanoid:A2VDN6 OMA:GMPPAKQ OrthoDB:EOG4N5VWN
NextBio:20866634 Uniprot:A2VDN6
Length = 793
Score = 195 (73.7 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 39/90 (43%), Positives = 55/90 (61%)
Query: 8 PEPQLDEEPVGKKIRSEESLIPEQVFLSKMAXXXXXXXXXXXXMTDKPEWKLNGQTLSLS 67
P P +++EP KK+++E+SL+PE+ FL + M DK EWKLNGQ L +
Sbjct: 672 PPPPMEDEPASKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPN-MQDKTEWKLNGQVLVFT 730
Query: 68 LDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
L L V+ +K +IH+ GMPAGKQKL +
Sbjct: 731 LPLTDQVSVIKVKIHEATGMPAGKQKLQYE 760
>UNIPROTKB|Q15459 [details] [associations]
symbol:SF3A1 "Splicing factor 3A subunit 1" species:9606
"Homo sapiens" [GO:0005684 "U2-type spliceosomal complex"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;IDA;TAS] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IMP] [GO:0000389 "mRNA 3'-splice site
recognition" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000061
InterPro:IPR000626 Pfam:PF00240 Pfam:PF01805 PROSITE:PS50128
SMART:SM00213 SMART:SM00648 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0003723 InterPro:IPR019955 PROSITE:PS50053 GO:GO:0071013
SUPFAM:SSF109905 GO:GO:0005684 GO:GO:0000389 eggNOG:NOG300902
InterPro:IPR022030 Pfam:PF12230 EMBL:AC004997 KO:K12825
HOGENOM:HOG000238941 CTD:10291 HOVERGEN:HBG059993 OMA:GMPPAKQ
OrthoDB:EOG4N5VWN EMBL:X85237 EMBL:CR456575 EMBL:BC001976
EMBL:BC007684 IPI:IPI00017451 PIR:S60735 RefSeq:NP_001005409.1
RefSeq:NP_005868.1 UniGene:Hs.406277 UniGene:Hs.505597 PDB:1ZKH
PDB:2DT6 PDB:2DT7 PDBsum:1ZKH PDBsum:2DT6 PDBsum:2DT7
ProteinModelPortal:Q15459 SMR:Q15459 DIP:DIP-29164N IntAct:Q15459
MINT:MINT-144269 STRING:Q15459 PhosphoSite:Q15459 DMDM:2498882
PaxDb:Q15459 PeptideAtlas:Q15459 PRIDE:Q15459 DNASU:10291
Ensembl:ENST00000215793 GeneID:10291 KEGG:hsa:10291 UCSC:uc003ahl.3
GeneCards:GC22M030727 HGNC:HGNC:10765 HPA:HPA000690 HPA:HPA030083
MIM:605595 neXtProt:NX_Q15459 PharmGKB:PA35683 InParanoid:Q15459
PhylomeDB:Q15459 ChiTaRS:SF3A1 EvolutionaryTrace:Q15459
GenomeRNAi:10291 NextBio:39000 PMAP-CutDB:Q15459
ArrayExpress:Q15459 Bgee:Q15459 CleanEx:HS_SF3A1
Genevestigator:Q15459 GermOnline:ENSG00000099995 Uniprot:Q15459
Length = 793
Score = 195 (73.7 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 39/90 (43%), Positives = 55/90 (61%)
Query: 8 PEPQLDEEPVGKKIRSEESLIPEQVFLSKMAXXXXXXXXXXXXMTDKPEWKLNGQTLSLS 67
P P +++EP KK+++E+SL+PE+ FL + M DK EWKLNGQ L +
Sbjct: 672 PPPPMEDEPTSKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPN-MQDKTEWKLNGQVLVFT 730
Query: 68 LDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
L L V+ +K +IH+ GMPAGKQKL +
Sbjct: 731 LPLTDQVSVIKVKIHEATGMPAGKQKLQYE 760
>UNIPROTKB|F1RFD3 [details] [associations]
symbol:SF3A1 "Splicing factor 3A subunit 1" species:9823
"Sus scrofa" [GO:0006396 "RNA processing" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000061 InterPro:IPR000626
Pfam:PF00240 Pfam:PF01805 PROSITE:PS50128 SMART:SM00213
SMART:SM00648 GO:GO:0003723 GO:GO:0006396 InterPro:IPR019955
PROSITE:PS50053 SUPFAM:SSF109905 GeneTree:ENSGT00570000079144
InterPro:IPR022030 Pfam:PF12230 KO:K12825 CTD:10291 OMA:GMPPAKQ
EMBL:CT956025 EMBL:GACC01000073 RefSeq:XP_003483500.1
UniGene:Ssc.97139 Ensembl:ENSSSCT00000010959 GeneID:100154850
KEGG:ssc:100154850 Uniprot:F1RFD3
Length = 793
Score = 195 (73.7 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 39/90 (43%), Positives = 55/90 (61%)
Query: 8 PEPQLDEEPVGKKIRSEESLIPEQVFLSKMAXXXXXXXXXXXXMTDKPEWKLNGQTLSLS 67
P P +++EP KK+++E+SL+PE+ FL + M DK EWKLNGQ L +
Sbjct: 672 PPPPMEDEPASKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPN-MQDKTEWKLNGQVLVFT 730
Query: 68 LDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
L L V+ +K +IH+ GMPAGKQKL +
Sbjct: 731 LPLTDQVSVIKVKIHEATGMPAGKQKLQYE 760
>MGI|MGI:1914715 [details] [associations]
symbol:Sf3a1 "splicing factor 3a, subunit 1" species:10090
"Mus musculus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005684 "U2-type spliceosomal complex"
evidence=ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=ISO] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000061 InterPro:IPR000626 Pfam:PF00240
Pfam:PF01805 PROSITE:PS50128 SMART:SM00213 SMART:SM00648
MGI:MGI:1914715 GO:GO:0003723 InterPro:IPR019955 PROSITE:PS50053
GO:GO:0000398 GO:GO:0071013 EMBL:AL807825 SUPFAM:SSF109905
GO:GO:0005684 eggNOG:NOG300902 GeneTree:ENSGT00570000079144
InterPro:IPR022030 Pfam:PF12230 KO:K12825 HOGENOM:HOG000238941
CTD:10291 HOVERGEN:HBG059993 OMA:GMPPAKQ OrthoDB:EOG4N5VWN
ChiTaRS:SF3A1 EMBL:AK028829 EMBL:AK029095 EMBL:AK030223
EMBL:BC010727 EMBL:BC029753 IPI:IPI00408796 RefSeq:NP_080451.4
UniGene:Mm.156914 PDB:1WE7 PDBsum:1WE7 ProteinModelPortal:Q8K4Z5
SMR:Q8K4Z5 IntAct:Q8K4Z5 STRING:Q8K4Z5 PhosphoSite:Q8K4Z5
PaxDb:Q8K4Z5 PRIDE:Q8K4Z5 Ensembl:ENSMUST00000002198 GeneID:67465
KEGG:mmu:67465 UCSC:uc007hup.2 InParanoid:Q8K4Z5
EvolutionaryTrace:Q8K4Z5 NextBio:324654 Bgee:Q8K4Z5
CleanEx:MM_SF3A1 Genevestigator:Q8K4Z5
GermOnline:ENSMUSG00000002129 Uniprot:Q8K4Z5
Length = 791
Score = 191 (72.3 bits), Expect = 6.8e-14, P = 6.8e-14
Identities = 39/90 (43%), Positives = 55/90 (61%)
Query: 8 PEPQLDEEPVGKKIRSEESLIPEQVFLSKMAXXXXXXXXXXXXMTDKPEWKLNGQTLSLS 67
P P +++EP KK+++E+SL+PE+ FL + M DK EWKLNGQ L +
Sbjct: 670 PPPPMEDEPPSKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPN-MQDKTEWKLNGQGLVFT 728
Query: 68 LDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
L L V+ +K +IH+ GMPAGKQKL +
Sbjct: 729 LPLTDQVSVIKVKIHEATGMPAGKQKLQYE 758
>RGD|1311477 [details] [associations]
symbol:Sf3a1 "splicing factor 3a, subunit 1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005684 "U2-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000061
InterPro:IPR000626 Pfam:PF00240 Pfam:PF01805 PROSITE:PS50128
SMART:SM00213 SMART:SM00648 RGD:1311477 GO:GO:0003723
InterPro:IPR019955 PROSITE:PS50053 GO:GO:0000398 GO:GO:0071013
SUPFAM:SSF109905 GO:GO:0005684 EMBL:CH473963
GeneTree:ENSGT00570000079144 InterPro:IPR022030 Pfam:PF12230
KO:K12825 CTD:10291 OMA:GMPPAKQ OrthoDB:EOG4N5VWN IPI:IPI00215030
RefSeq:NP_001100705.1 UniGene:Rn.114913 Ensembl:ENSRNOT00000008355
GeneID:305479 KEGG:rno:305479 UCSC:RGD:1311477 NextBio:654684
Uniprot:D3ZQM0
Length = 791
Score = 191 (72.3 bits), Expect = 6.8e-14, P = 6.8e-14
Identities = 39/90 (43%), Positives = 55/90 (61%)
Query: 8 PEPQLDEEPVGKKIRSEESLIPEQVFLSKMAXXXXXXXXXXXXMTDKPEWKLNGQTLSLS 67
P P +++EP KK+++E+SL+PE+ FL + M DK EWKLNGQ L +
Sbjct: 670 PPPPMEDEPPSKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPN-MQDKTEWKLNGQGLVFT 728
Query: 68 LDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
L L V+ +K +IH+ GMPAGKQKL +
Sbjct: 729 LPLTDQVSVIKVKIHEATGMPAGKQKLQYE 758
>ZFIN|ZDB-GENE-030616-156 [details] [associations]
symbol:sf3a1 "splicing factor 3a, subunit 1"
species:7955 "Danio rerio" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000626 Pfam:PF00240 Pfam:PF01805
PROSITE:PS50128 SMART:SM00213 SMART:SM00648
ZFIN:ZDB-GENE-030616-156 GO:GO:0003723 GO:GO:0006396
InterPro:IPR019955 PROSITE:PS50053 SUPFAM:SSF109905 EMBL:AL591213
HSSP:Q15843 GeneTree:ENSGT00570000079144 InterPro:IPR022030
Pfam:PF12230 KO:K12825 HOGENOM:HOG000238941 CTD:10291
HOVERGEN:HBG059993 OMA:GMPPAKQ EMBL:FP074877 EMBL:BC056521
EMBL:BC066392 EMBL:BC171506 EMBL:BC171508 IPI:IPI00502874
RefSeq:NP_956388.1 UniGene:Dr.28440 SMR:Q90X41 STRING:Q90X41
Ensembl:ENSDART00000061378 Ensembl:ENSDART00000121416
Ensembl:ENSDART00000126687 GeneID:796388 KEGG:dre:796388
InParanoid:Q90X41 NextBio:20932585 Uniprot:Q90X41
Length = 780
Score = 177 (67.4 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 39/93 (41%), Positives = 55/93 (59%)
Query: 6 PA-PEPQLDEEPVGKKIRSEESLIPEQVFLSKMAXXXXXXXXXXXXMTDKPEWKLNGQTL 64
PA P P ++EP KK+++E++LI E FL + M DK EWKL+GQ L
Sbjct: 656 PAHPPPPHEDEPSSKKMKTEDNLIAEDEFLRRNKGPVAVKVQVPN-MQDKTEWKLSGQVL 714
Query: 65 SLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
+ +L L V+ +K +IH+ GMPAGKQKL +
Sbjct: 715 NFNLPLTDQVSVIKVKIHEATGMPAGKQKLQYE 747
>FB|FBgn0038464 [details] [associations]
symbol:CG16941 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0005686 "U2 snRNP"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IC] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0007052 "mitotic
spindle organization" evidence=IMP] [GO:0007067 "mitosis"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000061 InterPro:IPR000626 Pfam:PF00240 Pfam:PF01805
PROSITE:PS50128 SMART:SM00213 SMART:SM00648 EMBL:AE014297
GO:GO:0007067 GO:GO:0007052 GO:GO:0003723 InterPro:IPR019955
PROSITE:PS50053 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
HSSP:Q862M4 GO:GO:0005686 GO:GO:0000381 SUPFAM:SSF109905
InterPro:IPR019956 PRINTS:PR00348 eggNOG:NOG300902
GeneTree:ENSGT00570000079144 InterPro:IPR022030 Pfam:PF12230
KO:K12825 OMA:GMPPAKQ EMBL:AY047530 RefSeq:NP_650583.1
UniGene:Dm.4173 SMR:Q9VEP9 IntAct:Q9VEP9 MINT:MINT-968540
STRING:Q9VEP9 EnsemblMetazoa:FBtr0083374 GeneID:42048
KEGG:dme:Dmel_CG16941 UCSC:CG16941-RA FlyBase:FBgn0038464
InParanoid:Q9VEP9 OrthoDB:EOG4P2NHB GenomeRNAi:42048 NextBio:826909
Uniprot:Q9VEP9
Length = 784
Score = 164 (62.8 bits), Expect = 5.2e-11, P = 5.2e-11
Identities = 37/91 (40%), Positives = 53/91 (58%)
Query: 7 APEPQLD---EEPVGKKIRSEESLIPEQVFLSKMAXXXXXXXXXXXXMTDKPEWKLNGQT 63
AP P +D EEP KKIRSE++LIPE F++ +DK EWKLNGQ
Sbjct: 660 APAPPVDIMEEEPPSKKIRSEDNLIPEADFIA--THKSPVTIQVLVPNSDKSEWKLNGQM 717
Query: 64 LSLSLDLRTSVTALKSQIHDLIGMPAGKQKL 94
+++++ L + LK+++ D GMP KQK+
Sbjct: 718 IAVTMALSEPIANLKTKLQDETGMPPAKQKI 748
>WB|WBGene00004188 [details] [associations]
symbol:prp-21 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of
an epithelium" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0016477 "cell
migration" evidence=IMP] [GO:0007281 "germ cell development"
evidence=IMP] InterPro:IPR000061 InterPro:IPR000626 Pfam:PF00240
Pfam:PF01805 PROSITE:PS50128 SMART:SM00213 SMART:SM00648
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0016477
GO:GO:0008406 GO:GO:0016246 GO:GO:0003723 GO:GO:0042127
GO:GO:0006396 GO:GO:0040035 GO:GO:0007281 InterPro:IPR019955
PROSITE:PS50053 GO:GO:0040002 GO:GO:0040020 SUPFAM:SSF109905
GeneTree:ENSGT00570000079144 InterPro:IPR022030 Pfam:PF12230
KO:K12825 OMA:GMPPAKQ EMBL:FO081752 EMBL:U09415 PIR:S50096
RefSeq:NP_493746.1 UniGene:Cel.19742 SMR:G5ECL3 IntAct:G5ECL3
EnsemblMetazoa:W07E6.4 GeneID:173440 KEGG:cel:CELE_W07E6.4
CTD:173440 WormBase:W07E6.4 NextBio:879663 Uniprot:G5ECL3
Length = 655
Score = 113 (44.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 27/82 (32%), Positives = 41/82 (50%)
Query: 16 PVGKKIRSEESLIPEQVFLSKMAXXXXXXXXXXXXMTDKPEWKLNGQTLSLSLDLRTSVT 75
P K+ R+E+ LIPE +L K+ + PE ++G + ++ + ++
Sbjct: 545 PPAKRPRTEDDLIPEADWLKKV----NGAISLNVHLPQAPEHGMDGSIVQFTIQVTAPMS 600
Query: 76 ALKSQIHDLIGMPAGKQKLHLD 97
LK QI D GMP GKQKL D
Sbjct: 601 ELKQQIQDRYGMPVGKQKLMSD 622
>UNIPROTKB|G5ECL3 [details] [associations]
symbol:prp-21 "Protein PRP-21" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000061 InterPro:IPR000626 Pfam:PF00240 Pfam:PF01805
PROSITE:PS50128 SMART:SM00213 SMART:SM00648 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0016477 GO:GO:0008406
GO:GO:0016246 GO:GO:0003723 GO:GO:0042127 GO:GO:0006396
GO:GO:0040035 GO:GO:0007281 InterPro:IPR019955 PROSITE:PS50053
GO:GO:0040002 GO:GO:0040020 SUPFAM:SSF109905
GeneTree:ENSGT00570000079144 InterPro:IPR022030 Pfam:PF12230
KO:K12825 OMA:GMPPAKQ EMBL:FO081752 EMBL:U09415 PIR:S50096
RefSeq:NP_493746.1 UniGene:Cel.19742 SMR:G5ECL3 IntAct:G5ECL3
EnsemblMetazoa:W07E6.4 GeneID:173440 KEGG:cel:CELE_W07E6.4
CTD:173440 WormBase:W07E6.4 NextBio:879663 Uniprot:G5ECL3
Length = 655
Score = 113 (44.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 27/82 (32%), Positives = 41/82 (50%)
Query: 16 PVGKKIRSEESLIPEQVFLSKMAXXXXXXXXXXXXMTDKPEWKLNGQTLSLSLDLRTSVT 75
P K+ R+E+ LIPE +L K+ + PE ++G + ++ + ++
Sbjct: 545 PPAKRPRTEDDLIPEADWLKKV----NGAISLNVHLPQAPEHGMDGSIVQFTIQVTAPMS 600
Query: 76 ALKSQIHDLIGMPAGKQKLHLD 97
LK QI D GMP GKQKL D
Sbjct: 601 ELKQQIQDRYGMPVGKQKLMSD 622
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.130 0.367 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 99 87 0.00091 102 3 11 23 0.38 30
29 0.48 30
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 13
No. of states in DFA: 471 (50 KB)
Total size of DFA: 93 KB (2070 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 9.20u 0.09s 9.29t Elapsed: 00:00:07
Total cpu time: 9.20u 0.09s 9.29t Elapsed: 00:00:08
Start: Thu Aug 15 12:48:48 2013 End: Thu Aug 15 12:48:56 2013