RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10057
(99 letters)
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 61.0 bits (148), Expect = 1e-14
Identities = 31/54 (57%), Positives = 37/54 (68%)
Query: 42 VTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLH 95
V+ V VPNM DK EWKLNGQ L +L L V+ +K +IH+ GMPAGKQKL
Sbjct: 2 VSIKVQVPNMQDKTEWKLNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQ 55
>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal
domain {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 111
Score = 40.0 bits (93), Expect = 3e-06
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 18 GKKIRSEES-LIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTA 76
G + +ES L+PE FL++ P T V PN D GQ + +++ +
Sbjct: 4 GSSGKFDESALVPEDQFLAQHPGP-ATIRVSKPNEND-------GQFMEITVQSLSENVG 55
Query: 77 -LKSQIHDLIGMPAGKQKLH 95
LK +I I +PA KQKL
Sbjct: 56 SLKEKIAGEIQIPANKQKLS 75
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 97
Score = 37.6 bits (87), Expect = 2e-05
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 7/61 (11%)
Query: 35 SKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKL 94
S + +T + N Q L L +V +K + L+ +P + L
Sbjct: 3 SGSSGQLLTLKIKCSNQ-------PERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLL 55
Query: 95 H 95
Sbjct: 56 S 56
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId:
9606]}
Length = 76
Score = 31.8 bits (72), Expect = 0.003
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
L G+T++L ++ ++ +K++I D G+P +Q+L
Sbjct: 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46
>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 100
Score = 31.9 bits (72), Expect = 0.004
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
Query: 42 VTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKL 94
T V +P + L L + L+S+I + G+ K+
Sbjct: 16 ATIEVFLPPRL------KKDRKNLLETRLHITGRELRSKIAETFGLQENYIKI 62
>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding
cofactor B {Nematode (Caenorhabditis elegans) [TaxId:
6239]}
Length = 90
Score = 31.4 bits (71), Expect = 0.005
Identities = 5/40 (12%), Positives = 13/40 (32%)
Query: 57 WKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHL 96
+ S+ LK ++ ++G ++ L
Sbjct: 11 TNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQL 50
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 105
Score = 30.8 bits (69), Expect = 0.009
Identities = 7/42 (16%), Positives = 19/42 (45%)
Query: 58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLDVS 99
K++G+ + + + +V LK I + + ++ +S
Sbjct: 14 KMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHIS 55
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 29.4 bits (66), Expect = 0.021
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
L+ QT + + + +V K I + +P+ KQ+L
Sbjct: 8 LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ 46
>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding
cofactor B {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 29.5 bits (66), Expect = 0.024
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHL 96
LN ++ K ++ ++G PA +L L
Sbjct: 16 LNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELEL 53
>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 95
Score = 29.5 bits (66), Expect = 0.024
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLH 95
N + + L ++ + LK +IH + G+P QK+
Sbjct: 23 IWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVM 60
>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 27.9 bits (62), Expect = 0.076
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
L G +SL SV+ LK+QI IG+ A +Q+L +
Sbjct: 8 LAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVH 46
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 28.1 bits (62), Expect = 0.095
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLH 95
L T SL ++ ++ + G+PA + ++
Sbjct: 19 LTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIV 55
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 73
Score = 27.0 bits (60), Expect = 0.13
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
K +++ ++V K I+ G+P Q+L
Sbjct: 7 KSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS 46
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 78
Score = 27.2 bits (60), Expect = 0.14
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
+ + +D TS+ LK + G+PA + ++
Sbjct: 10 NSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFA 48
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like
protein, OASL {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 26.8 bits (59), Expect = 0.22
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
+G + + +++ + + LK QI D G+P +Q+L
Sbjct: 15 PDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQ 53
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 100
Score = 26.9 bits (59), Expect = 0.22
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLH 95
G+ + + + ++ LK I G K L
Sbjct: 36 RLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLK 72
>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone
regulator-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 26.4 bits (58), Expect = 0.31
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 62 QTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHL 96
S V L + ++IG+P QKL
Sbjct: 16 HVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIF 50
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 23.8 bits (51), Expect = 3.3
Identities = 6/38 (15%), Positives = 11/38 (28%)
Query: 58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLH 95
K + ++ +SV K I + L
Sbjct: 38 KTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLI 75
>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 23.3 bits (50), Expect = 4.9
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
+ T+ ++V LK + ++ P +Q+L+ D
Sbjct: 9 HKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKD 46
>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG
{Synechococcus sp. pcc 7942 [TaxId: 1140]}
Length = 294
Score = 23.6 bits (50), Expect = 6.4
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 6 PAPEPQLDEEPVGKKIRSEESLIPEQVFLS 35
PA D + V +I + I E V +
Sbjct: 11 PAGNRNYDVQAVKDRIAASGLSISELVSTA 40
>d1rw5a1 a.26.1.1 (A:1-199) Prolactin (placental lactogen) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 199
Score = 23.3 bits (50), Expect = 7.1
Identities = 7/47 (14%), Positives = 19/47 (40%)
Query: 24 EESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDL 70
++ + F++K T ++ P ++ + LSL + +
Sbjct: 41 DKRYTHGRGFITKAINSCHTSSLATPEDKEQAQQMNQKDFLSLIVSI 87
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.130 0.371
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 343,024
Number of extensions: 13430
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 25
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.2 bits)