BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10058
(59 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 43/50 (86%)
Query: 9 DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
D +SLR+LGSVGEPINPEAW+WY+ IG KC +VDT+WQTETGG ++TP
Sbjct: 376 DRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITP 425
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 43/50 (86%)
Query: 9 DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
D +SLR+LGSVGEPINPEAW+WY+ IG KC +VDT+WQTETGG ++TP
Sbjct: 376 DRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITP 425
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 43/50 (86%)
Query: 9 DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
D +SLR+LGSVGEPINPEAW+WY+ IG KC +VDT+WQTETGG ++TP
Sbjct: 376 DRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITP 425
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 43/50 (86%)
Query: 9 DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
D +SLR+LGSVGEPINPEAW+WY+ IG KC +VDT+WQTETGG ++TP
Sbjct: 376 DRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITP 425
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 43/50 (86%)
Query: 9 DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
D +SLR+LGSVGEPINPEAW+WY+ IG KC +VDT+WQTETGG ++TP
Sbjct: 376 DRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITP 425
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 43/50 (86%)
Query: 9 DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
D +SLR+LGSVGEPINPEAW+WY+ IG KC +VDT+WQTETGG ++TP
Sbjct: 376 DRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITP 425
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 42/50 (84%)
Query: 9 DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
D +SLR+LGS GEPINPEAW+WY+ IG KC +VDT+WQTETGG ++TP
Sbjct: 376 DRSSLRILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITP 425
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 40/56 (71%)
Query: 3 SYPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
SY + H L SLR LGSVGEPI E W+WY IG + IVDT+WQTE+G H++TP
Sbjct: 376 SYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTP 431
>pdb|3NIV|A Chain A, The Crystal Structure Of Glutathione S-Transferase From
Legionella Pneumophila
pdb|3NIV|B Chain B, The Crystal Structure Of Glutathione S-Transferase From
Legionella Pneumophila
pdb|3NIV|C Chain C, The Crystal Structure Of Glutathione S-Transferase From
Legionella Pneumophila
pdb|3NIV|D Chain D, The Crystal Structure Of Glutathione S-Transferase From
Legionella Pneumophila
Length = 222
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 8 HDLNSLRVLGSVGEPINP---EAWQWYYHSIGGG 38
H LN+LRVL + E N + +WY+H + G
Sbjct: 108 HPLNNLRVLNRLKEQFNANEEQVLEWYHHWLKTG 141
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 7 KHDLNSLRVLGSVGEPINPE 26
KHDL+SLR++ S G P+ E
Sbjct: 293 KHDLSSLRMIKSGGAPLGKE 312
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTET 51
++ ++L+ GEP+NPE + + G +++ F QTET
Sbjct: 338 YNFSTLKYAVVAGEPLNPEVFNRFLEFTG---IKLMEGFGQTET 378
>pdb|3ER6|A Chain A, Crystal Structure Of A Putative Transcriptional Regulator
Protein From Vibrio Parahaemolyticus
pdb|3ER6|B Chain B, Crystal Structure Of A Putative Transcriptional Regulator
Protein From Vibrio Parahaemolyticus
pdb|3ER6|C Chain C, Crystal Structure Of A Putative Transcriptional Regulator
Protein From Vibrio Parahaemolyticus
pdb|3ER6|D Chain D, Crystal Structure Of A Putative Transcriptional Regulator
Protein From Vibrio Parahaemolyticus
pdb|3ER6|E Chain E, Crystal Structure Of A Putative Transcriptional Regulator
Protein From Vibrio Parahaemolyticus
pdb|3ER6|F Chain F, Crystal Structure Of A Putative Transcriptional Regulator
Protein From Vibrio Parahaemolyticus
Length = 209
Score = 25.4 bits (54), Expect = 9.7, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 6 QKHDLNSLRVLGSVGEP------INPEAWQWYYH-SIGGGKCSIVDT 45
Q D ++ ++GS+G+P I+P + W + G K +DT
Sbjct: 70 QSFDFTNILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDT 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.469
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,339,523
Number of Sequences: 62578
Number of extensions: 81056
Number of successful extensions: 193
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 184
Number of HSP's gapped (non-prelim): 12
length of query: 59
length of database: 14,973,337
effective HSP length: 30
effective length of query: 29
effective length of database: 13,095,997
effective search space: 379783913
effective search space used: 379783913
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)