Query psy10058
Match_columns 59
No_of_seqs 120 out of 1462
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 16:49:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10058.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10058hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0365 Acs Acyl-coenzyme A sy 99.3 4.1E-12 8.9E-17 78.5 4.5 51 5-58 284-334 (528)
2 KOG1176|consensus 98.8 8.1E-09 1.7E-13 64.3 5.2 51 5-57 293-343 (537)
3 PTZ00237 acetyl-CoA synthetase 98.8 4.2E-09 9.2E-14 66.0 4.0 47 6-55 375-421 (647)
4 TIGR02316 propion_prpE propion 98.7 3.5E-08 7.7E-13 61.5 5.0 46 6-54 349-394 (628)
5 TIGR02188 Ac_CoA_lig_AcsA acet 98.7 4E-08 8.7E-13 61.1 5.1 50 7-56 354-403 (625)
6 PTZ00342 acyl-CoA synthetase; 98.7 3.1E-08 6.8E-13 63.4 4.7 43 11-56 461-503 (746)
7 PRK07529 AMP-binding domain pr 98.7 4.6E-08 9.9E-13 61.1 4.9 46 7-55 329-374 (632)
8 PLN02654 acetate-CoA ligase 98.7 5E-08 1.1E-12 61.4 4.8 51 6-56 392-442 (666)
9 PRK10524 prpE propionyl-CoA sy 98.7 3.9E-08 8.5E-13 61.1 4.3 45 6-53 350-394 (629)
10 PF00501 AMP-binding: AMP-bind 98.7 5.5E-08 1.2E-12 57.4 4.7 48 7-56 273-320 (417)
11 PRK08043 bifunctional acyl-[ac 98.6 5.7E-08 1.2E-12 61.4 4.3 47 7-56 475-521 (718)
12 COG0318 CaiC Acyl-CoA syntheta 98.6 1.2E-07 2.6E-12 58.5 5.2 44 12-57 292-335 (534)
13 PRK07788 acyl-CoA synthetase; 98.6 7.7E-08 1.7E-12 58.9 4.4 46 7-55 319-364 (549)
14 PRK06334 long chain fatty acid 98.6 1.1E-07 2.4E-12 58.4 5.0 48 7-56 295-342 (539)
15 PRK09274 peptide synthase; Pro 98.6 1.3E-07 2.9E-12 57.8 4.7 48 7-55 284-331 (552)
16 PLN02387 long-chain-fatty-acid 98.6 1E-07 2.2E-12 60.4 4.2 42 11-55 420-461 (696)
17 PRK04319 acetyl-CoA synthetase 98.6 1.6E-07 3.4E-12 57.9 4.9 46 7-55 319-364 (570)
18 PRK13382 acyl-CoA synthetase; 98.5 1.8E-07 3.8E-12 57.4 4.9 46 8-56 309-354 (537)
19 KOG1175|consensus 98.5 6.8E-08 1.5E-12 61.1 3.0 50 7-58 355-404 (626)
20 PLN03052 acetate--CoA ligase; 98.5 1.5E-07 3.3E-12 60.1 4.2 48 6-55 466-513 (728)
21 COG1022 FAA1 Long-chain acyl-C 98.5 1.5E-07 3.2E-12 59.6 4.0 43 11-57 353-395 (613)
22 KOG1256|consensus 98.5 1.6E-07 3.5E-12 59.8 4.1 42 11-55 419-460 (691)
23 PRK13295 cyclohexanecarboxylat 98.5 2.9E-07 6.2E-12 56.4 5.1 46 7-55 308-353 (547)
24 PLN02736 long-chain acyl-CoA s 98.5 1.5E-07 3.4E-12 58.9 4.0 42 11-55 376-417 (651)
25 PRK00174 acetyl-CoA synthetase 98.5 2.9E-07 6.3E-12 57.4 5.1 49 7-55 363-411 (637)
26 PRK12492 long-chain-fatty-acid 98.5 2.7E-07 5.9E-12 56.7 4.8 47 7-56 329-375 (562)
27 PRK07656 long-chain-fatty-acid 98.5 3.3E-07 7.2E-12 55.3 4.9 46 8-56 278-324 (513)
28 PLN02860 o-succinylbenzoate-Co 98.5 2.6E-07 5.7E-12 56.9 4.5 46 8-55 285-330 (563)
29 PRK12406 long-chain-fatty-acid 98.5 4.6E-07 1E-11 55.0 5.2 47 7-56 267-313 (509)
30 PRK08633 2-acyl-glycerophospho 98.5 3.2E-07 6.9E-12 59.9 4.7 48 6-56 893-940 (1146)
31 PRK13383 acyl-CoA synthetase; 98.5 3.1E-07 6.7E-12 55.9 4.2 45 8-55 289-333 (516)
32 PRK08314 long-chain-fatty-acid 98.5 4E-07 8.6E-12 55.6 4.7 46 7-55 301-346 (546)
33 PRK05677 long-chain-fatty-acid 98.4 3.8E-07 8.2E-12 56.1 4.3 46 8-56 323-368 (562)
34 PRK06060 acyl-CoA synthetase; 98.4 3.3E-07 7.2E-12 57.8 4.0 46 8-55 257-302 (705)
35 PRK08276 long-chain-fatty-acid 98.4 4E-07 8.7E-12 55.0 4.3 46 7-55 258-303 (502)
36 TIGR03208 cyc_hxne_CoA_lg cycl 98.4 6.1E-07 1.3E-11 54.9 5.0 45 8-55 307-351 (538)
37 TIGR01733 AA-adenyl-dom amino 98.4 5.8E-07 1.2E-11 52.8 4.5 46 8-55 231-276 (408)
38 PRK08751 putative long-chain f 98.4 5.9E-07 1.3E-11 55.1 4.4 47 7-56 325-371 (560)
39 KOG1180|consensus 98.4 3E-07 6.6E-12 57.8 3.2 43 11-56 402-444 (678)
40 PRK06814 acylglycerophosphoeth 98.4 6.9E-07 1.5E-11 58.7 5.0 47 7-56 903-949 (1140)
41 PRK07008 long-chain-fatty-acid 98.4 7E-07 1.5E-11 54.7 4.6 44 8-54 290-333 (539)
42 PRK13391 acyl-CoA synthetase; 98.4 8.5E-07 1.8E-11 53.9 5.0 46 7-55 271-316 (511)
43 PRK12582 acyl-CoA synthetase; 98.4 4.9E-07 1.1E-11 56.4 3.7 47 9-56 344-394 (624)
44 PLN02574 4-coumarate--CoA liga 98.4 8.4E-07 1.8E-11 54.6 4.7 47 7-55 315-361 (560)
45 PRK06145 acyl-CoA synthetase; 98.4 9.2E-07 2E-11 53.4 4.7 46 7-54 260-305 (497)
46 PLN03051 acyl-activating enzym 98.4 6.8E-07 1.5E-11 54.5 4.1 47 7-54 232-278 (499)
47 PRK07769 long-chain-fatty-acid 98.4 5.6E-07 1.2E-11 56.2 3.8 50 7-56 302-354 (631)
48 PRK06018 putative acyl-CoA syn 98.4 8.9E-07 1.9E-11 54.2 4.5 44 8-55 291-334 (542)
49 TIGR03205 pimA dicarboxylate-- 98.4 8.5E-07 1.9E-11 54.3 4.4 47 7-56 308-354 (541)
50 PRK04813 D-alanine--poly(phosp 98.3 1.1E-06 2.5E-11 52.9 4.8 47 7-55 256-302 (503)
51 PRK05605 long-chain-fatty-acid 98.3 7.6E-07 1.6E-11 54.8 4.0 47 7-56 332-378 (573)
52 PRK07470 acyl-CoA synthetase; 98.3 6E-07 1.3E-11 54.7 3.5 46 7-55 276-321 (528)
53 PRK05852 acyl-CoA synthetase; 98.3 6.3E-07 1.4E-11 54.7 3.6 45 8-55 292-336 (534)
54 PRK06187 long-chain-fatty-acid 98.3 9.7E-07 2.1E-11 53.2 4.3 47 7-56 277-323 (521)
55 PRK08180 feruloyl-CoA synthase 98.3 8.5E-07 1.8E-11 55.3 4.0 48 8-56 331-382 (614)
56 PRK12583 acyl-CoA synthetase; 98.3 1.2E-06 2.5E-11 53.6 4.5 48 7-56 313-360 (558)
57 PRK07787 acyl-CoA synthetase; 98.3 1.2E-06 2.7E-11 52.8 4.4 44 8-54 238-281 (471)
58 TIGR02275 DHB_AMP_lig 2,3-dihy 98.3 1.8E-06 4E-11 52.7 4.9 43 7-52 295-337 (527)
59 PRK08316 acyl-CoA synthetase; 98.3 1.7E-06 3.7E-11 52.3 4.8 47 7-55 282-328 (523)
60 PRK07514 malonyl-CoA synthase; 98.3 1.7E-06 3.8E-11 52.2 4.7 46 7-55 265-310 (504)
61 PRK03584 acetoacetyl-CoA synth 98.3 1.4E-06 3.1E-11 54.6 4.5 47 7-54 379-425 (655)
62 PRK06710 long-chain-fatty-acid 98.3 1E-06 2.3E-11 54.1 3.8 46 7-55 319-364 (563)
63 TIGR01734 D-ala-DACP-lig D-ala 98.3 2E-06 4.3E-11 52.0 4.9 47 7-55 254-300 (502)
64 PRK08974 long-chain-fatty-acid 98.3 2.1E-06 4.5E-11 52.8 5.0 46 8-56 322-367 (560)
65 PRK07824 O-succinylbenzoic aci 98.3 1.7E-06 3.8E-11 50.6 4.5 44 8-55 148-191 (358)
66 PLN02430 long-chain-fatty-acid 98.3 1E-06 2.2E-11 55.7 3.6 42 11-55 383-424 (660)
67 PRK06087 short chain acyl-CoA 98.3 2E-06 4.3E-11 52.7 4.9 45 7-55 298-342 (547)
68 PLN02246 4-coumarate--CoA liga 98.3 1.7E-06 3.8E-11 52.9 4.6 47 7-55 294-340 (537)
69 PRK05851 long-chain-fatty-acid 98.3 1E-06 2.2E-11 53.9 3.4 50 7-56 268-320 (525)
70 PRK06839 acyl-CoA synthetase; 98.3 2.4E-06 5.2E-11 51.5 4.9 45 7-55 260-304 (496)
71 PRK07059 Long-chain-fatty-acid 98.3 1.9E-06 4.1E-11 52.9 4.4 47 7-56 323-369 (557)
72 TIGR02262 benz_CoA_lig benzoat 98.2 1.7E-06 3.7E-11 52.5 4.0 44 9-55 276-319 (508)
73 PRK13390 acyl-CoA synthetase; 98.2 2.5E-06 5.4E-11 51.7 4.7 46 7-55 266-311 (501)
74 PRK06188 acyl-CoA synthetase; 98.2 2.3E-06 5.1E-11 52.1 4.3 45 8-55 278-322 (524)
75 PRK07798 acyl-CoA synthetase; 98.2 3.5E-06 7.5E-11 51.0 4.9 47 7-55 292-338 (533)
76 TIGR01217 ac_ac_CoA_syn acetoa 98.2 2.4E-06 5.3E-11 53.8 4.2 48 6-54 379-426 (652)
77 PRK10252 entF enterobactin syn 98.2 2.2E-06 4.8E-11 56.8 4.0 44 9-55 715-758 (1296)
78 TIGR03098 ligase_PEP_1 acyl-Co 98.2 4.2E-06 9.2E-11 50.6 4.9 45 8-54 271-315 (515)
79 PRK08315 AMP-binding domain pr 98.2 3.7E-06 8.1E-11 51.5 4.7 48 7-56 311-358 (559)
80 PLN02861 long-chain-fatty-acid 98.2 2.3E-06 4.9E-11 54.0 3.8 42 11-55 383-424 (660)
81 PRK10946 entE enterobactin syn 98.2 5E-06 1.1E-10 51.0 5.1 42 8-52 297-338 (536)
82 PTZ00216 acyl-CoA synthetase; 98.2 1.8E-06 4E-11 54.7 3.2 41 11-55 428-468 (700)
83 PRK05620 long-chain-fatty-acid 98.2 4.8E-06 1E-10 51.5 4.9 44 9-55 296-339 (576)
84 TIGR03335 F390_ftsA coenzyme F 98.2 3.6E-06 7.8E-11 51.2 4.2 40 10-52 203-242 (445)
85 TIGR02155 PA_CoA_ligase phenyl 98.2 3.5E-06 7.5E-11 50.6 4.0 39 11-52 195-233 (422)
86 PRK12467 peptide synthase; Pro 98.2 3.1E-06 6.8E-11 61.3 4.2 48 7-56 3347-3394(3956)
87 PRK07445 O-succinylbenzoic aci 98.1 2.8E-06 6E-11 51.6 3.4 44 8-55 227-270 (452)
88 PLN02614 long-chain acyl-CoA s 98.1 2.9E-06 6.3E-11 53.7 3.6 42 11-55 386-427 (666)
89 TIGR02372 4_coum_CoA_lig 4-cou 98.1 3.5E-06 7.6E-11 50.7 3.4 44 8-55 203-246 (386)
90 PRK12476 putative fatty-acid-- 98.1 3.1E-06 6.8E-11 52.8 3.3 48 7-55 314-364 (612)
91 PRK09088 acyl-CoA synthetase; 98.1 7E-06 1.5E-10 49.6 4.5 43 8-54 249-291 (488)
92 PLN02330 4-coumarate--CoA liga 98.1 5.7E-06 1.2E-10 50.8 4.2 41 12-54 304-344 (546)
93 KOG1177|consensus 98.1 4.1E-06 9E-11 52.3 3.5 50 6-57 345-394 (596)
94 TIGR03443 alpha_am_amid L-amin 98.0 1.4E-05 3.1E-10 53.6 4.7 46 8-55 526-571 (1389)
95 TIGR01923 menE O-succinylbenzo 98.0 1.6E-05 3.5E-10 47.2 4.5 42 11-56 219-260 (436)
96 PRK12316 peptide synthase; Pro 98.0 1.1E-05 2.3E-10 59.6 4.0 44 8-53 767-810 (5163)
97 PRK05850 acyl-CoA synthetase; 98.0 8.2E-06 1.8E-10 50.4 3.1 47 8-54 285-334 (578)
98 PRK07786 long-chain-fatty-acid 98.0 1.7E-05 3.6E-10 48.7 4.4 42 12-55 291-332 (542)
99 PRK12467 peptide synthase; Pro 98.0 1.7E-05 3.6E-10 57.8 4.8 46 8-55 1831-1876(3956)
100 PRK05857 acyl-CoA synthetase; 97.9 2.2E-05 4.9E-10 48.3 4.3 44 7-54 282-325 (540)
101 PRK12316 peptide synthase; Pro 97.9 2.1E-05 4.6E-10 58.1 4.6 46 9-56 4807-4852(5163)
102 PRK05691 peptide synthase; Val 97.9 1.5E-05 3.2E-10 58.3 3.8 46 8-55 1385-1430(4334)
103 PRK09029 O-succinylbenzoic aci 97.9 2.7E-05 5.9E-10 46.9 4.1 43 10-56 239-281 (458)
104 PRK07638 acyl-CoA synthetase; 97.9 4.4E-05 9.6E-10 46.2 4.9 44 11-56 253-296 (487)
105 PRK09192 acyl-CoA synthetase; 97.9 1.8E-05 3.8E-10 49.1 3.1 49 7-55 295-346 (579)
106 PRK05691 peptide synthase; Val 97.8 3.3E-05 7.1E-10 56.6 4.7 46 8-55 3980-4025(4334)
107 PRK03640 O-succinylbenzoic aci 97.8 3.8E-05 8.3E-10 46.3 4.4 41 10-54 253-293 (483)
108 PLN02479 acetate-CoA ligase 97.8 3.3E-05 7.1E-10 47.8 4.1 41 9-53 308-348 (567)
109 COG1541 PaaK Coenzyme F390 syn 97.8 2.8E-05 6.1E-10 47.9 3.7 43 9-54 208-250 (438)
110 PRK07768 long-chain-fatty-acid 97.8 5E-05 1.1E-09 46.6 4.1 49 7-55 272-323 (545)
111 PLN03102 acyl-activating enzym 97.7 7.3E-05 1.6E-09 46.5 4.4 41 10-54 299-339 (579)
112 TIGR02304 aden_form_hyp probab 97.7 8E-05 1.7E-09 45.7 4.2 37 11-50 212-248 (430)
113 PRK07868 acyl-CoA synthetase; 97.7 0.0001 2.2E-09 48.9 4.6 43 8-54 717-759 (994)
114 PRK08308 acyl-CoA synthetase; 97.6 8.4E-05 1.8E-09 44.4 3.5 39 12-54 213-251 (414)
115 PRK06155 crotonobetaine/carnit 97.6 0.00017 3.7E-09 44.5 4.8 43 9-56 292-334 (542)
116 PRK08008 caiC putative crotono 97.3 0.00055 1.2E-08 41.8 4.4 43 10-56 287-329 (517)
117 PRK07867 acyl-CoA synthetase; 97.3 0.00049 1.1E-08 42.5 4.2 40 11-55 267-306 (529)
118 COG1021 EntE Peptide arylation 97.3 0.0001 2.2E-09 45.6 1.2 44 6-52 300-343 (542)
119 PRK08162 acyl-CoA synthetase; 97.3 0.00064 1.4E-08 41.8 4.7 40 10-53 295-334 (545)
120 PRK06164 acyl-CoA synthetase; 97.2 0.00068 1.5E-08 41.6 3.8 45 7-55 290-335 (540)
121 PRK13388 acyl-CoA synthetase; 97.2 0.00091 2E-08 41.4 4.3 41 11-56 265-305 (540)
122 PRK08279 long-chain-acyl-CoA s 97.1 0.0012 2.6E-08 41.2 4.6 41 10-54 313-353 (600)
123 PRK06178 acyl-CoA synthetase; 96.7 0.0042 9.2E-08 38.5 4.3 45 7-54 321-368 (567)
124 KOG1179|consensus 95.3 0.037 8.1E-07 35.8 3.8 44 9-56 355-398 (649)
125 COG1020 EntF Non-ribosomal pep 92.6 0.23 5E-06 31.5 3.6 40 12-52 486-525 (642)
126 PF04443 LuxE: Acyl-protein sy 90.0 0.46 1E-05 29.0 3.0 43 13-55 223-273 (365)
127 PF06543 Lac_bphage_repr: Lact 87.5 0.74 1.6E-05 20.4 2.0 23 14-36 22-44 (49)
128 PF00818 Ice_nucleation: Ice n 72.0 1.8 3.9E-05 14.8 0.4 9 45-53 1-9 (16)
129 PRK11121 nrdG anaerobic ribonu 56.6 20 0.00043 19.2 2.9 11 14-24 68-78 (154)
130 PF11208 DUF2992: Protein of u 46.3 37 0.00079 18.1 2.8 22 15-36 26-47 (132)
131 PTZ00297 pantothenate kinase; 38.6 31 0.00068 25.3 2.2 33 11-52 757-791 (1452)
132 KOG0136|consensus 36.7 32 0.0007 23.2 1.9 27 24-53 128-154 (670)
133 PF04915 DltD_N: DltD N-termin 31.3 52 0.0011 15.3 1.7 13 40-52 28-40 (62)
134 KOG2531|consensus 30.8 1.3E+02 0.0029 19.9 3.9 32 11-45 442-473 (545)
135 PF12162 STAT1_TAZ2bind: STAT1 30.5 41 0.00089 12.5 1.9 14 21-34 8-21 (23)
136 PF03321 GH3: GH3 auxin-respon 30.1 65 0.0014 20.9 2.5 40 10-52 266-307 (528)
137 PF13213 DUF4021: Protein of u 29.3 24 0.00051 15.4 0.4 9 44-52 28-36 (46)
138 PF01634 HisG: ATP phosphoribo 29.1 59 0.0013 17.9 2.0 30 24-54 74-103 (163)
139 PRK13584 hisG ATP phosphoribos 28.2 85 0.0018 18.1 2.5 32 23-55 111-142 (204)
140 KOG1794|consensus 27.2 44 0.00095 20.6 1.3 43 10-55 68-112 (336)
141 PF13699 DUF4157: Domain of un 26.4 87 0.0019 14.9 2.1 15 22-36 1-15 (79)
142 PF11922 DUF3440: Domain of un 26.1 82 0.0018 17.9 2.2 28 22-51 26-53 (181)
143 PF04530 Viral_Beta_CD: Viral 24.7 1.2E+02 0.0027 16.1 2.7 25 9-34 87-111 (122)
144 PF05726 Pirin_C: Pirin C-term 24.6 28 0.0006 17.3 0.2 18 11-28 61-78 (104)
145 PRK01686 hisG ATP phosphoribos 24.6 1.1E+02 0.0024 17.7 2.6 30 24-54 122-151 (215)
146 COG4126 Hydantoin racemase [Am 21.6 1.3E+02 0.0028 17.8 2.5 29 13-45 175-203 (230)
147 TIGR02491 NrdG anaerobic ribon 21.0 65 0.0014 17.1 1.2 10 15-24 67-76 (154)
148 COG0040 HisG ATP phosphoribosy 20.6 1.3E+02 0.0028 18.4 2.4 30 24-54 123-152 (290)
149 TIGR00070 hisG ATP phosphoribo 20.2 1.6E+02 0.0034 16.6 2.6 30 24-54 116-145 (182)
150 COG0602 NrdG Organic radical a 20.2 1.1E+02 0.0024 17.4 2.0 12 14-25 74-85 (212)
151 PF04110 APG12: Ubiquitin-like 20.1 1.1E+02 0.0023 15.2 1.7 35 16-51 51-85 (87)
152 PF05414 DUF1717: Viral domain 20.1 1.4E+02 0.003 14.9 2.5 27 20-49 24-50 (101)
153 PF03702 UPF0075: Uncharacteri 20.0 1.3E+02 0.0028 18.8 2.4 24 13-36 286-309 (364)
No 1
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=99.29 E-value=4.1e-12 Score=78.54 Aligned_cols=51 Identities=51% Similarity=0.897 Sum_probs=46.2
Q ss_pred CCCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceeccc
Q psy10058 5 PQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58 (59)
Q Consensus 5 ~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~ 58 (59)
.+++++++||.+.+.|+|++++.++|+.+.+| +++.+.|||||++++...+
T Consensus 284 ~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g---~~i~d~~gqTEtg~~~~~~ 334 (528)
T COG0365 284 GEPYDLSSLRVLGSAGEPLNPEAFEWFYSALG---VWILDIYGQTETGMGFIAG 334 (528)
T ss_pred cccccchhheeeeccCCCCCHHHHHHHHHHhC---CCEeccccccccCccccCC
Confidence 46789999999999999999999999999999 9999999999999665543
No 2
>KOG1176|consensus
Probab=98.84 E-value=8.1e-09 Score=64.32 Aligned_cols=51 Identities=27% Similarity=0.443 Sum_probs=44.9
Q ss_pred CCCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceecc
Q psy10058 5 PQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLT 57 (59)
Q Consensus 5 ~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~ 57 (59)
...++++++|.+.+||+|+++++.+++.+.+++ ..+.++||+||+++.++.
T Consensus 293 ~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~--~~v~q~YGmTE~~~~~~~ 343 (537)
T KOG1176|consen 293 VKKYDLSSLRSVLSGGAPLSPATLEKVKERLPN--VTVIQGYGMTEAGGLITS 343 (537)
T ss_pred cCcccCCccEEEEecCCCCCHHHHHHHHHhCCC--ceEEEeeccccccCceee
Confidence 346899999999999999999999999999984 789999999999966543
No 3
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=98.84 E-value=4.2e-09 Score=65.98 Aligned_cols=47 Identities=23% Similarity=0.211 Sum_probs=41.8
Q ss_pred CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..+++++||.+.++|+++++++++++++.++ +.+++.||+||++.++
T Consensus 375 ~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g---~~i~~~yG~TE~~~~~ 421 (647)
T PTZ00237 375 SKYDLSNLKEIWCGGEVIEESIPEYIENKLK---IKSSRGYGQTEIGITY 421 (647)
T ss_pred cccCcchheEEEecCccCCHHHHHHHHHhcC---CCEEeeechHHhChhh
Confidence 3467889999999999999999999999888 8899999999997543
No 4
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=98.70 E-value=3.5e-08 Score=61.48 Aligned_cols=46 Identities=41% Similarity=0.755 Sum_probs=41.0
Q ss_pred CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058 6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH 54 (59)
Q Consensus 6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~ 54 (59)
..+++++||.+.++|+++++++++++.+.++ ..+++.||+||++..
T Consensus 349 ~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~---~~~~~~yG~TE~~~~ 394 (628)
T TIGR02316 349 RKHDLSSLHWLFLAGEPLDEPTAHWITDGLG---KPVIDNYWQTETGWP 394 (628)
T ss_pred ccCCccceeEEEEecCCCCHHHHHHHHHHhC---CCEEecccccccCce
Confidence 3567899999999999999999999999888 789999999999743
No 5
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=98.70 E-value=4e-08 Score=61.05 Aligned_cols=50 Identities=72% Similarity=1.404 Sum_probs=42.0
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
..++++||.+.++|+++++++++++.+.++..++++++.||+||+++.++
T Consensus 354 ~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 403 (625)
T TIGR02188 354 KHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMI 403 (625)
T ss_pred cCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCcee
Confidence 46788999999999999999999999888632267999999999986543
No 6
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=98.70 E-value=3.1e-08 Score=63.45 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=38.5
Q ss_pred CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
.+||.+++||+|+++++.+++...+| +.++++||+||+++.++
T Consensus 461 ~~lr~~~sGGapl~~~~~~~~~~~~g---~~i~~gYGlTEt~~~~~ 503 (746)
T PTZ00342 461 PNLEVILNGGGKLSPKIAEELSVLLN---VNYYQGYGLTETTGPIF 503 (746)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHhcC---CCEEEeeccCcccceee
Confidence 58999999999999999999998888 88999999999975543
No 7
>PRK07529 AMP-binding domain protein; Validated
Probab=98.68 E-value=4.6e-08 Score=61.15 Aligned_cols=46 Identities=26% Similarity=0.344 Sum_probs=41.1
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..++++||.+++||+++++++.+++++.++ +.+++.||+||++.++
T Consensus 329 ~~~~~slr~v~~gg~~l~~~l~~~~~~~~g---~~l~~~YG~TE~~~~~ 374 (632)
T PRK07529 329 GHDISSLRYALCGAAPLPVEVFRRFEAATG---VRIVEGYGLTEATCVS 374 (632)
T ss_pred CCCccceEEEEEcCCCCCHHHHHHHHHHhC---CcEeeeecccccCccc
Confidence 457889999999999999999999999887 8899999999987544
No 8
>PLN02654 acetate-CoA ligase
Probab=98.66 E-value=5e-08 Score=61.43 Aligned_cols=51 Identities=59% Similarity=1.279 Sum_probs=42.6
Q ss_pred CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
..+++++||.+.++|+|+++++++++.+.+|...+++.+.||+||+++..+
T Consensus 392 ~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~ 442 (666)
T PLN02654 392 TRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMI 442 (666)
T ss_pred ccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeee
Confidence 346788999999999999999999999998732257899999999986543
No 9
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=98.66 E-value=3.9e-08 Score=61.11 Aligned_cols=45 Identities=44% Similarity=0.849 Sum_probs=40.4
Q ss_pred CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccc
Q psy10058 6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGG 53 (59)
Q Consensus 6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~ 53 (59)
..+++++||.++++|+++++++.+++.+.++ +++++.||+||++.
T Consensus 350 ~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~---~~v~~~YG~TE~~~ 394 (629)
T PRK10524 350 RKHDLSSLRALFLAGEPLDEPTASWISEALG---VPVIDNYWQTETGW 394 (629)
T ss_pred cccChhheeEEEEeCCCCCHHHHHHHHHhcC---CCeEeccccccccc
Confidence 3467889999999999999999999999888 78999999999974
No 10
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=98.66 E-value=5.5e-08 Score=57.39 Aligned_cols=48 Identities=35% Similarity=0.548 Sum_probs=40.5
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
..++++||.++++|+++++++.+++++.++. ..+++.||+||++.+++
T Consensus 273 ~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~--~~i~~~YG~tE~~~~~~ 320 (417)
T PF00501_consen 273 KKDLSSLRTVISGGEPLPPDLLRRLRKAFGN--APIINLYGSTETGSIAT 320 (417)
T ss_dssp TTTGTT-SEEEEESST-CHHHHHHHHHHHTT--SEEEEEEEEGGGSSEEE
T ss_pred ccccccccccccccccCChhhcccccccccc--ccceecccccccceeee
Confidence 3578889999999999999999999999982 48999999999998765
No 11
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=98.62 E-value=5.7e-08 Score=61.45 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=41.4
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
..++++||.+++||+++++++.+++++.++ +.+++.||+||++++++
T Consensus 475 ~~~~~~lr~i~~gg~~l~~~~~~~~~~~~g---~~l~~~YG~TE~~~~~~ 521 (718)
T PRK08043 475 PYDFARLRYVVAGAEKLQESTKQLWQDKFG---LRILEGYGVTECAPVVS 521 (718)
T ss_pred cccccceEEEEEeCccCCHHHHHHHHHHcC---CCeecccCcccccceEE
Confidence 456789999999999999999999999888 88999999999976543
No 12
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.61 E-value=1.2e-07 Score=58.49 Aligned_cols=44 Identities=32% Similarity=0.432 Sum_probs=38.7
Q ss_pred ccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceecc
Q psy10058 12 SLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLT 57 (59)
Q Consensus 12 ~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~ 57 (59)
+||.+++||+++++++.+++.+.++. ..+.+.||+||++++++.
T Consensus 292 ~lr~~~~gg~~~~~~~~~~~~~~~~~--~~i~~~YG~TE~~~~~~~ 335 (534)
T COG0318 292 SLRLVLSGGAPLPPELLERFEERFGP--IAILEGYGLTETSPVVTI 335 (534)
T ss_pred ceEEEEecCCcCCHHHHHHHHHHhCC--CceEEeecccccCceeec
Confidence 39999999999999999999999983 469999999999876543
No 13
>PRK07788 acyl-CoA synthetase; Validated
Probab=98.60 E-value=7.7e-08 Score=58.87 Aligned_cols=46 Identities=22% Similarity=0.261 Sum_probs=40.4
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..++++||.+++||+++++++.+++.+.++ ..+++.||+||++.+.
T Consensus 319 ~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~l~~~YG~TE~~~~~ 364 (549)
T PRK07788 319 KYDTSSLKIIFVSGSALSPELATRALEAFG---PVLYNLYGSTEVAFAT 364 (549)
T ss_pred CCCCCceeEEEEeCCCCCHHHHHHHHHHhC---ccceeccCcchhchhh
Confidence 456789999999999999999999999988 7899999999987543
No 14
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=98.60 E-value=1.1e-07 Score=58.42 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=41.0
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
..++++||.+++||+++++++.+++.+.++. ..+++.||+||++.+++
T Consensus 295 ~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~--~~i~~~YG~TE~~~~~~ 342 (539)
T PRK06334 295 ESCLPSLRFVVIGGDAFKDSLYQEALKTFPH--IQLRQGYGTTECSPVIT 342 (539)
T ss_pred ccccccccEEEECCccCCHHHHHHHHHHCCC--CeEEecccccccCceEE
Confidence 3467899999999999999999999998853 78999999999976543
No 15
>PRK09274 peptide synthase; Provisional
Probab=98.57 E-value=1.3e-07 Score=57.80 Aligned_cols=48 Identities=21% Similarity=0.191 Sum_probs=40.9
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..++++||.+++||+++++++.+++.+.++. ++.+++.||+||++.++
T Consensus 284 ~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~ 331 (552)
T PRK09274 284 GIKLPSLRRVISAGAPVPIAVIERFRAMLPP-DAEILTPYGATEALPIS 331 (552)
T ss_pred CCCCchhhEEEecCCcCCHHHHHHHHHHcCC-CceEEccccccccceeE
Confidence 4578899999999999999999999999851 15899999999997644
No 16
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=98.56 E-value=1e-07 Score=60.38 Aligned_cols=42 Identities=21% Similarity=0.311 Sum_probs=37.1
Q ss_pred CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
.+||.+++||+|+++++.+.+...++ ++++++||+||+++.+
T Consensus 420 ~~lr~i~~GGapl~~~~~~~~~~~~g---~~v~~~YG~TEt~~~~ 461 (696)
T PLN02387 420 GRIRFMLSGGAPLSGDTQRFINICLG---APIGQGYGLTETCAGA 461 (696)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHcC---CCeeEeechhhcccce
Confidence 57999999999999999888877788 8899999999997544
No 17
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=98.56 E-value=1.6e-07 Score=57.88 Aligned_cols=46 Identities=52% Similarity=0.865 Sum_probs=40.8
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..++++||.+.++|+++++++.+++.+.++ ..+.+.||+||+++++
T Consensus 319 ~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g---~~i~~~YG~tE~~~~~ 364 (570)
T PRK04319 319 KYDLSSLRHILSVGEPLNPEVVRWGMKVFG---LPIHDNWWMTETGGIM 364 (570)
T ss_pred cCCcccceEEEEcccCCCHHHHHHHHHHhC---CCeEeceeecccCCEE
Confidence 456789999999999999999999998888 7899999999997654
No 18
>PRK13382 acyl-CoA synthetase; Provisional
Probab=98.55 E-value=1.8e-07 Score=57.37 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=40.1
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
+++++||.+++||+++++++.+.+.+.++ ..+++.||+||++.+++
T Consensus 309 ~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~i~~~YG~TE~~~~~~ 354 (537)
T PRK13382 309 YSGRSLRFAAASGSRMRPDVVIAFMDQFG---DVIYNNYNATEAGMIAT 354 (537)
T ss_pred CCccceeEEEEcCCCCCHHHHHHHHHHcC---CcEEecccccccCccee
Confidence 45568999999999999999999999988 67999999999976543
No 19
>KOG1175|consensus
Probab=98.54 E-value=6.8e-08 Score=61.12 Aligned_cols=50 Identities=56% Similarity=0.925 Sum_probs=43.6
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceeccc
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~ 58 (59)
.++.++||.+.+.|+|++++.++|+.+.++. .++++.|||||+++.++++
T Consensus 355 ~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~--~pv~e~~~qtEtG~~~i~~ 404 (626)
T KOG1175|consen 355 SYSLKSLRTCGSVGEPINPEAWEWWKRVTGL--DPIYETYGQTETGGICITP 404 (626)
T ss_pred ccccceEEEEeecCccCCcchHHHHHHhcCc--cchhhceeeeccCceeeec
Confidence 4555789999999999999999999999983 3799999999999887764
No 20
>PLN03052 acetate--CoA ligase; Provisional
Probab=98.52 E-value=1.5e-07 Score=60.07 Aligned_cols=48 Identities=29% Similarity=0.464 Sum_probs=40.8
Q ss_pred CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..+++++||.+.++|++++++.+.|+.+.++. .++++.||+||+++++
T Consensus 466 ~~~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~--~~i~~~yG~TE~~~~~ 513 (728)
T PLN03052 466 AGLDWSSIRCFGSTGEASSVDDYLWLMSRAGY--KPIIEYCGGTELGGGF 513 (728)
T ss_pred ccCChhheeEEEecCCCCCHHHHHHHHHhcCC--CCeEeeccChhhCccc
Confidence 45688999999999999999999988887762 5789999999997654
No 21
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=98.51 E-value=1.5e-07 Score=59.56 Aligned_cols=43 Identities=30% Similarity=0.499 Sum_probs=36.5
Q ss_pred CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceecc
Q psy10058 11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLT 57 (59)
Q Consensus 11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~ 57 (59)
..+|++.+||+++++++...+ ..+| +++.++|||||+.++++.
T Consensus 353 gri~~~~sGGa~l~~~~~~f~-~~lG---i~i~eGYGlTEts~~~~v 395 (613)
T COG1022 353 GRIRYALSGGAPLSPELLHFF-RSLG---IPILEGYGLTETSAVVSV 395 (613)
T ss_pred CcEEEEEecCCcCCHHHHHHH-HHcC---CCeEEEecccccccceEE
Confidence 468999999999999998877 4557 899999999999876653
No 22
>KOG1256|consensus
Probab=98.51 E-value=1.6e-07 Score=59.85 Aligned_cols=42 Identities=24% Similarity=0.566 Sum_probs=37.5
Q ss_pred CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..+|.+++|++|+++++..-++..++ +.+.++|||||+.+.+
T Consensus 419 g~vr~~~sGaAPls~ev~~F~r~~~g---~~v~eGYGlTEts~g~ 460 (691)
T KOG1256|consen 419 GNVRLIISGAAPLSPEVLTFFRAALG---CRVLEGYGLTETSAGT 460 (691)
T ss_pred CceeEEEecCCCCCHHHHHHHHHhcC---ceeeecccccccCCce
Confidence 46889999999999999999988888 9999999999998433
No 23
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=98.51 E-value=2.9e-07 Score=56.43 Aligned_cols=46 Identities=26% Similarity=0.344 Sum_probs=40.6
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..++++||.+.++|+++++++.+++.+.++ ..+++.||+||++.+.
T Consensus 308 ~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~ 353 (547)
T PRK13295 308 GRPVSSLRTFLCAGAPIPGALVERARAALG---AKIVSAWGMTENGAVT 353 (547)
T ss_pred CCCcccceEEEEecCCCCHHHHHHHHHHhC---CCeEEeccCCCCCCee
Confidence 356788999999999999999999999887 8899999999997554
No 24
>PLN02736 long-chain acyl-CoA synthetase
Probab=98.51 E-value=1.5e-07 Score=58.92 Aligned_cols=42 Identities=19% Similarity=0.412 Sum_probs=37.7
Q ss_pred CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
++||.+++||+++++++.+++.+.++ +.+++.||+||++.++
T Consensus 376 ~~lr~~~~gGa~l~~~~~~~~~~~~g---~~~~~~YG~TE~~~~~ 417 (651)
T PLN02736 376 GRVRFMSSGASPLSPDVMEFLRICFG---GRVLEGYGMTETSCVI 417 (651)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhC---CCeEEEechHHhchhe
Confidence 47999999999999999999988888 7899999999997544
No 25
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=98.51 E-value=2.9e-07 Score=57.43 Aligned_cols=49 Identities=73% Similarity=1.429 Sum_probs=40.9
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..++++||.+.++|+++++++.+++.+.++...+++++.||+||++.++
T Consensus 363 ~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~ 411 (637)
T PRK00174 363 KYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIM 411 (637)
T ss_pred cCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCce
Confidence 3567899999999999999999999888762126799999999997654
No 26
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=98.50 E-value=2.7e-07 Score=56.73 Aligned_cols=47 Identities=23% Similarity=0.350 Sum_probs=41.1
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
..+++++|.+.+||+++++.+.+++.+.++ +.+.+.||+||++.+++
T Consensus 329 ~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~ 375 (562)
T PRK12492 329 DLDFSALKLTNSGGTALVKATAERWEQLTG---CTIVEGYGLTETSPVAS 375 (562)
T ss_pred cccccceeEEEeccccCCHHHHHHHHHHhC---CceeeccCccccCceee
Confidence 456789999999999999999999998887 88999999999976553
No 27
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.49 E-value=3.3e-07 Score=55.27 Aligned_cols=46 Identities=17% Similarity=0.277 Sum_probs=40.5
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCcc-ceEeccccCcccceec
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKC-SIVDTFWQTETGGHVL 56 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~-~i~~~yG~TE~~~~~~ 56 (59)
.+++++|.++++|+++++++.+++.+.++ . .+++.||+||+++++.
T Consensus 278 ~~~~~l~~v~~~g~~~~~~~~~~~~~~~~---~~~~~~~YG~tE~~~~~~ 324 (513)
T PRK07656 278 EDLSSLRLAVTGAASMPVALLERFESELG---VDIVLTGYGLSEASGVTT 324 (513)
T ss_pred CCccceeeEEecCCCCCHHHHHHHHHHcC---CCceEeEEccccCCCcee
Confidence 46788999999999999999999999988 6 8999999999976543
No 28
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=98.48 E-value=2.6e-07 Score=56.88 Aligned_cols=46 Identities=11% Similarity=0.079 Sum_probs=39.7
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
.++++||.+++||+++++++.+++.+.+++ ..+++.||+||+++.+
T Consensus 285 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~--~~~~~~YG~TE~~~~~ 330 (563)
T PLN02860 285 KVFPSVRKILNGGGSLSSRLLPDAKKLFPN--AKLFSAYGMTEACSSL 330 (563)
T ss_pred ccccceeEEEeCCCcCCHHHHHHHHHhcCC--CceecCCCccccCccc
Confidence 456789999999999999999999998853 7899999999987543
No 29
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=98.47 E-value=4.6e-07 Score=54.95 Aligned_cols=47 Identities=23% Similarity=0.248 Sum_probs=41.1
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
.+++++||.++.||+++++++.+++.+.++ +.+++.||+||++.++.
T Consensus 267 ~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~ 313 (509)
T PRK12406 267 KYDVSSLRHVIHAAAPCPADVKRAMIEWWG---PVIYEYYGSTESGAVTF 313 (509)
T ss_pred cCCCCceeEEEEcCCCCCHHHHHHHHHHcC---CcEEeeccccccCceEe
Confidence 456789999999999999999999999887 78999999999986543
No 30
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.47 E-value=3.2e-07 Score=59.87 Aligned_cols=48 Identities=23% Similarity=0.275 Sum_probs=41.9
Q ss_pred CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
.+.+++++|.+.+||+++++++.+++++.++ ..+.+.||+||++++++
T Consensus 893 ~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g---~~~~~~YG~tE~~~~~~ 940 (1146)
T PRK08633 893 HPLMFASLRLVVAGAEKLKPEVADAFEEKFG---IRILEGYGATETSPVAS 940 (1146)
T ss_pred CcccCCCeeeEEEcCCcCCHHHHHHHHHHhC---CCeecccccccCcceEE
Confidence 3456789999999999999999999999988 78999999999976543
No 31
>PRK13383 acyl-CoA synthetase; Provisional
Probab=98.45 E-value=3.1e-07 Score=55.89 Aligned_cols=45 Identities=27% Similarity=0.378 Sum_probs=39.7
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
.+++++|.+++||+++++++.+++.+.++ ..+++.||+||++..+
T Consensus 289 ~~~~~lr~i~~gG~~l~~~~~~~~~~~~g---~~v~~~YG~tE~~~~~ 333 (516)
T PRK13383 289 NPLPQLRVVMSSGDRLDPTLGQRFMDTYG---DILYNGYGSTEVGIGA 333 (516)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHcC---chhhhcccccccccce
Confidence 35678999999999999999999999988 7899999999997543
No 32
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.45 E-value=4e-07 Score=55.56 Aligned_cols=46 Identities=26% Similarity=0.321 Sum_probs=40.4
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..+++++|.+++||+++++++.+++.+.++ ..+++.||+||++...
T Consensus 301 ~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~ 346 (546)
T PRK08314 301 ERDLSSLRYIGGGGAAMPEAVAERLKELTG---LDYVEGYGLTETMAQT 346 (546)
T ss_pred ccCchhhheeeeccccCCHHHHHHHHHHcC---CcEEecccccccccce
Confidence 456778999999999999999999999887 7899999999997543
No 33
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.44 E-value=3.8e-07 Score=56.12 Aligned_cols=46 Identities=24% Similarity=0.321 Sum_probs=40.0
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
.++++||.+++||+++++++.+++.+.++ +.+++.||+||++.++.
T Consensus 323 ~~~~~lr~v~~gG~~~~~~~~~~~~~~~~---~~v~~~YG~tE~~~~~~ 368 (562)
T PRK05677 323 LDFSALKLTLSGGMALQLATAERWKEVTG---CAICEGYGMTETSPVVS 368 (562)
T ss_pred CChhhceEEEEcCccCCHHHHHHHHHHcC---CCeeccCCccccCccee
Confidence 35678999999999999999999999887 88999999999875543
No 34
>PRK06060 acyl-CoA synthetase; Validated
Probab=98.43 E-value=3.3e-07 Score=57.83 Aligned_cols=46 Identities=28% Similarity=0.366 Sum_probs=39.9
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
.++++||.+++||+++++++.+++.+.+++ +.+++.||+||++.++
T Consensus 257 ~~~~slr~i~~gGe~l~~~~~~~~~~~~~~--~~~~~~YG~tE~~~~~ 302 (705)
T PRK06060 257 DSFRSLRCVVSAGEALELGLAERLMEFFGG--IPILDGIGSTEVGQTF 302 (705)
T ss_pred ccccceeEEEEecCcCCHHHHHHHHHHcCC--CceEeeeeccccCceE
Confidence 456789999999999999999999998863 7899999999997543
No 35
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.43 E-value=4e-07 Score=55.05 Aligned_cols=46 Identities=26% Similarity=0.252 Sum_probs=40.6
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
.++++++|.++++|+++++++.+++.+.++ ..+++.||+||++.++
T Consensus 258 ~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~---~~~~~~yG~tE~~~~~ 303 (502)
T PRK08276 258 RYDVSSLRVAIHAAAPCPVEVKRAMIDWWG---PIIHEYYASSEGGGVT 303 (502)
T ss_pred CCCcccceEEEecCCCCCHHHHHHHHHHhC---cHhhhhccccccccee
Confidence 456789999999999999999999999887 6789999999998643
No 36
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=98.43 E-value=6.1e-07 Score=54.86 Aligned_cols=45 Identities=24% Similarity=0.270 Sum_probs=39.9
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
.+++++|.++++|+++++++.+++.+.++ +.+++.||+||++.+.
T Consensus 307 ~~~~~l~~~~~gG~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~ 351 (538)
T TIGR03208 307 APVPSLFTFLCAGAPIPGILVERAWELLG---ALIVSAWGMTENGAVT 351 (538)
T ss_pred CCCCcceEEEEcCCCCCHHHHHHHHHHcC---CeEEeeeccCcCCCcc
Confidence 46788999999999999999999988887 7899999999987554
No 37
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=98.41 E-value=5.8e-07 Score=52.84 Aligned_cols=46 Identities=24% Similarity=0.263 Sum_probs=40.7
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
.++++||.+.++|+++++++.+.+.+.++. +.+.+.||+||++.++
T Consensus 231 ~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~--~~i~~~YG~tE~g~~~ 276 (408)
T TIGR01733 231 PALASLRLVILGGEALTPALVDRWRARGPG--ARLINLYGPTETTVWS 276 (408)
T ss_pred hcccCceEEEEeCccCCHHHHHHHHHhCCC--cEEEecccCCceEEEE
Confidence 457889999999999999999999999873 7899999999998665
No 38
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=98.40 E-value=5.9e-07 Score=55.10 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=40.8
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
..++++||.+++||+++++++.+++++.++ +.+++.||+||++.+++
T Consensus 325 ~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~ 371 (560)
T PRK08751 325 QIDFSSLKMTLGGGMAVQRSVAERWKQVTG---LTLVEAYGLTETSPAAC 371 (560)
T ss_pred CcchhhheeeeeCCCCCCHHHHHHHHHHhC---CeEEEeeccccCCCcee
Confidence 356779999999999999999999998887 78999999999976543
No 39
>KOG1180|consensus
Probab=98.40 E-value=3e-07 Score=57.84 Aligned_cols=43 Identities=23% Similarity=0.419 Sum_probs=37.2
Q ss_pred CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
..||++++||+|++++..+-+.-.+. +++.++||+||+++..+
T Consensus 402 G~lR~~LsGGapLS~dtQrF~nic~C---~Pv~qGYGLTEtca~~t 444 (678)
T KOG1180|consen 402 GNLRYILSGGAPLSPDTQRFMNICFC---CPVLQGYGLTETCAAAT 444 (678)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHhcc---ccccccccccchhcccE
Confidence 46999999999999999888877787 79999999999975443
No 40
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.40 E-value=6.9e-07 Score=58.66 Aligned_cols=47 Identities=26% Similarity=0.301 Sum_probs=41.4
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
..+++++|.+.+||+++++++.+++.+.++ ..+++.||+||++..++
T Consensus 903 ~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~ 949 (1140)
T PRK06814 903 PYDFRSLRYVFAGAEKVKEETRQTWMEKFG---IRILEGYGVTETAPVIA 949 (1140)
T ss_pred cccccceeEEEEcCCcCCHHHHHHHHHHhC---CcEEeccccccccceEE
Confidence 457789999999999999999999999887 78999999999976543
No 41
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.39 E-value=7e-07 Score=54.74 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=39.8
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH 54 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~ 54 (59)
.++++||.++++|+++++++.+++.+.++ ..+++.||+||++..
T Consensus 290 ~~~~~l~~~~~~G~~l~~~~~~~~~~~~~---~~l~~~YG~tE~~~~ 333 (539)
T PRK07008 290 LRFSTLRRTVIGGSACPPAMIRTFEDEYG---VEVIHAWGMTEMSPL 333 (539)
T ss_pred CCcccceEEEEcCCCCCHHHHHHHHHHhC---Cceeccccccccccc
Confidence 46788999999999999999999999988 889999999999754
No 42
>PRK13391 acyl-CoA synthetase; Provisional
Probab=98.39 E-value=8.5e-07 Score=53.89 Aligned_cols=46 Identities=28% Similarity=0.242 Sum_probs=40.3
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..+++++|.+++||+++++++.+++.+.++ ..+++.||+||++.+.
T Consensus 271 ~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g---~~v~~~YG~tE~~~~~ 316 (511)
T PRK13391 271 KYDLSSLEVAIHAAAPCPPQVKEQMIDWWG---PIIHEYYAATEGLGFT 316 (511)
T ss_pred cCCccceeEEEEccCCCCHHHHHHHHHHcC---CceeeeeccccccceE
Confidence 346789999999999999999999998887 7899999999997653
No 43
>PRK12582 acyl-CoA synthetase; Provisional
Probab=98.37 E-value=4.9e-07 Score=56.45 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=38.1
Q ss_pred CCCccceeeecCCCCCHHHHHHHHHHh----CCCccceEeccccCcccceec
Q psy10058 9 DLNSLRVLGSVGEPINPEAWQWYYHSI----GGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 9 ~~~~lr~~~~~g~~~~~~~~~~~~~~~----~~~~~~i~~~yG~TE~~~~~~ 56 (59)
++++||.+++||+++++++.+++.+.+ +. ++++++.||+||++.++.
T Consensus 344 ~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~-~~~l~~~YG~TE~~~~~~ 394 (624)
T PRK12582 344 FFKNLRLMAYGGATLSDDLYERMQALAVRTTGH-RIPFYTGYGATETAPTTT 394 (624)
T ss_pred HhhheeEEEecCCCCCHHHHHHHHHHHHhhcCC-CceEEeccccccccceee
Confidence 467899999999999999999998753 31 156899999999976554
No 44
>PLN02574 4-coumarate--CoA ligase-like
Probab=98.37 E-value=8.4e-07 Score=54.65 Aligned_cols=47 Identities=15% Similarity=0.180 Sum_probs=40.4
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..++++||.+.++|+++++++.+++.+.+++ +.+.+.||+||++.+.
T Consensus 315 ~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~--~~v~~~YG~tE~~~~~ 361 (560)
T PLN02574 315 GEVLKSLKQVSCGAAPLSGKFIQDFVQTLPH--VDFIQGYGMTESTAVG 361 (560)
T ss_pred cCccccceEEEEecccCCHHHHHHHHHHCCC--CcEEecccccccCcee
Confidence 4567899999999999999999999988853 7899999999987543
No 45
>PRK06145 acyl-CoA synthetase; Validated
Probab=98.37 E-value=9.2e-07 Score=53.39 Aligned_cols=46 Identities=22% Similarity=0.177 Sum_probs=40.0
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH 54 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~ 54 (59)
..+++++|.+++||+++++++.+++.+.++. ..+++.||+||++..
T Consensus 260 ~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~--~~v~~~YG~tE~~~~ 305 (497)
T PRK06145 260 RFDLDSLAWCIGGGEKTPESRIRDFTRVFTR--ARYIDAYGLTETCSG 305 (497)
T ss_pred ccccccceEEEecCCCCCHHHHHHHHHHcCC--CceEEeecCcccCCc
Confidence 4566789999999999999999999998863 789999999999764
No 46
>PLN03051 acyl-activating enzyme; Provisional
Probab=98.36 E-value=6.8e-07 Score=54.45 Aligned_cols=47 Identities=23% Similarity=0.256 Sum_probs=36.9
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH 54 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~ 54 (59)
..++++||.+.+||++++++..+++++.++. .+.+++.||+||++..
T Consensus 232 ~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~-~~~~~~~YG~TE~~~~ 278 (499)
T PLN03051 232 GLDWSKLRVFASTGEASAVDDVLWLSSVRGY-YKPVIEYCGGTELASG 278 (499)
T ss_pred cCCchhheEEEecCCCCCHHHHHHHHHhccc-cceeEeeeccccccce
Confidence 4577899999999999999998887763321 1568999999998643
No 47
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.36 E-value=5.6e-07 Score=56.15 Aligned_cols=50 Identities=18% Similarity=0.234 Sum_probs=39.7
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCC---CccceEeccccCcccceec
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGG---GKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~---~~~~i~~~yG~TE~~~~~~ 56 (59)
..++++||.+++||+++++++.+++.+.++. ....+++.||+||++.+++
T Consensus 302 ~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~ 354 (631)
T PRK07769 302 PLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVS 354 (631)
T ss_pred CcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEe
Confidence 3578899999999999999999999988731 0134889999999875443
No 48
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=98.35 E-value=8.9e-07 Score=54.24 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=38.9
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
.++++||.++++|+++++++.+++++ ++ .++++.||+||++.++
T Consensus 291 ~~~~~lr~~~~~G~~l~~~~~~~~~~-~~---~~~~~~YG~tE~~~~~ 334 (542)
T PRK06018 291 LKLPHLKMVVCGGSAMPRSMIKAFED-MG---VEVRHAWGMTEMSPLG 334 (542)
T ss_pred CCcccceEEEEcCCCCCHHHHHHHHH-hC---CCeEeeecccccCccc
Confidence 45678999999999999999999988 77 8899999999997553
No 49
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=98.35 E-value=8.5e-07 Score=54.26 Aligned_cols=47 Identities=30% Similarity=0.385 Sum_probs=40.2
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
..+++++|.+++||+++++++.+++.+.++ ..+++.||+||++..++
T Consensus 308 ~~~~~~l~~i~~gg~~~~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~ 354 (541)
T TIGR03205 308 KRDLSSLATIGSGGAPLPVEVANFFERKTG---LKLKSGWGMTETCSPGT 354 (541)
T ss_pred ccCccccceEEEccccCCHHHHHHHHHHhC---CCeecccccccCCcccc
Confidence 345678999999999999999999988887 78999999999975543
No 50
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=98.35 E-value=1.1e-06 Score=52.87 Aligned_cols=47 Identities=19% Similarity=0.177 Sum_probs=40.4
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..+++++|.++++|+++++++.+++.+.++. ..+++.||+||++..+
T Consensus 256 ~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~--~~~~~~yG~tE~~~~~ 302 (503)
T PRK04813 256 EEHLPNLTHFLFCGEELPHKTAKKLLERFPS--ATIYNTYGPTEATVAV 302 (503)
T ss_pred cccCCCceEEEEecCcCCHHHHHHHHHHCCC--ceEEeCcccchheeEE
Confidence 4567889999999999999999999999853 7899999999986543
No 51
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.34 E-value=7.6e-07 Score=54.81 Aligned_cols=47 Identities=19% Similarity=0.151 Sum_probs=40.6
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
..++++||.+++||+++++++.+++.+.++ ..+++.||+||++.++.
T Consensus 332 ~~~~~~lr~i~~gg~~l~~~~~~~~~~~~~---~~i~~~YG~TE~~~~~~ 378 (573)
T PRK05605 332 GVDLSGVRNAFSGAMALPVSTVELWEKLTG---GLLVEGYGLTETSPIIV 378 (573)
T ss_pred CCCchhccEEEECCCcCCHHHHHHHHHHhC---CCeecccccchhchhhh
Confidence 346788999999999999999999988887 78999999999975543
No 52
>PRK07470 acyl-CoA synthetase; Validated
Probab=98.34 E-value=6e-07 Score=54.67 Aligned_cols=46 Identities=24% Similarity=0.309 Sum_probs=40.0
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..+++++|.+++||++++++..+++.+.++ ..+++.||+||+++.+
T Consensus 276 ~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g---~~~~~~YG~TE~~~~~ 321 (528)
T PRK07470 276 RYDHSSLRYVIYAGAPMYRADQKRALAKLG---KVLVQYFGLGEVTGNI 321 (528)
T ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHHHhC---cHHHHhCCCcccCCce
Confidence 356789999999999999999999988887 6789999999987544
No 53
>PRK05852 acyl-CoA synthetase; Validated
Probab=98.34 E-value=6.3e-07 Score=54.74 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=39.7
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
.+++++|.+.++|+++++++.+++.+.++ ..+++.||+||++..+
T Consensus 292 ~~~~~lr~i~~~G~~~~~~~~~~~~~~~~---~~v~~~YG~tE~~~~~ 336 (534)
T PRK05852 292 RKPAALRFIRSCSAPLTAETAQALQTEFA---APVVCAFGMTEATHQV 336 (534)
T ss_pred ccCCCeeEEEECCCCCCHHHHHHHHHHhC---CChhhccCccccchhh
Confidence 35678999999999999999999999998 7899999999997544
No 54
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.33 E-value=9.7e-07 Score=53.20 Aligned_cols=47 Identities=26% Similarity=0.300 Sum_probs=41.1
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
..+++++|.+.++|+++++++.+++.+.++ +.+++.||+||+++++.
T Consensus 277 ~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~---~~v~~~YG~tE~~~~~~ 323 (521)
T PRK06187 277 FVDFSSLRLVIYGGAALPPALLREFKEKFG---IDLVQGYGMTETSPVVS 323 (521)
T ss_pred ccCcchhhEEEEcCcCCCHHHHHHHHHHhC---cchheeeccCccCcccc
Confidence 456789999999999999999999999886 88999999999976543
No 55
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=98.33 E-value=8.5e-07 Score=55.31 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=38.4
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHH----hCCCccceEeccccCcccceec
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHS----IGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~----~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
.++++||.+++||+++++++.+++.+. ++. ++.+++.||+||++.+++
T Consensus 331 ~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~-~~~l~~~YG~TE~~~~~~ 382 (614)
T PRK08180 331 RFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGE-RIRMMTGLGMTETAPSAT 382 (614)
T ss_pred hhccceeEEEEccCCCCHHHHHHHHHHHHhhcCC-CceeeeeecccccCCceE
Confidence 456899999999999999999998874 331 156899999999976543
No 56
>PRK12583 acyl-CoA synthetase; Provisional
Probab=98.32 E-value=1.2e-06 Score=53.59 Aligned_cols=48 Identities=25% Similarity=0.194 Sum_probs=40.9
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
..++++||.+++||+++++++.+++.+.++. ..+.+.||+||++.+++
T Consensus 313 ~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~--~~i~~~YG~tE~~~~~~ 360 (558)
T PRK12583 313 NFDLSSLRTGIMAGAPCPIEVMRRVMDEMHM--AEVQIAYGMTETSPVSL 360 (558)
T ss_pred CCCchhheEEEecCCCCCHHHHHHHHHHcCC--cceecccccccccccee
Confidence 3467899999999999999999999998873 56899999999986543
No 57
>PRK07787 acyl-CoA synthetase; Validated
Probab=98.31 E-value=1.2e-06 Score=52.80 Aligned_cols=44 Identities=20% Similarity=0.119 Sum_probs=38.9
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH 54 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~ 54 (59)
.++.++|.+++||+++++++.+++.+.++ ..+++.||+||++..
T Consensus 238 ~~l~~l~~~~~gg~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~ 281 (471)
T PRK07787 238 RALRGARLLVSGSAALPVPVFDRLAALTG---HRPVERYGMTETLIT 281 (471)
T ss_pred ccccceeEEEECCCCCCHHHHHHHHHHcC---CCeecccCccccCcc
Confidence 45678999999999999999999998887 789999999999754
No 58
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=98.30 E-value=1.8e-06 Score=52.69 Aligned_cols=43 Identities=26% Similarity=0.325 Sum_probs=38.6
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccc
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETG 52 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~ 52 (59)
..+++++|.+++||+++++++.+++.+.++ ..+.+.||+||+.
T Consensus 295 ~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g---~~~~~~YG~tE~~ 337 (527)
T TIGR02275 295 RYDLSSLKLLQVGGAKFSEAAARRVPAVFG---CQLQQVFGMAEGL 337 (527)
T ss_pred CCCccceEEEEEcCCCCCHHHHHHHHHHhC---CeEEeeeccCccC
Confidence 356778999999999999999999999888 7899999999965
No 59
>PRK08316 acyl-CoA synthetase; Validated
Probab=98.30 E-value=1.7e-06 Score=52.30 Aligned_cols=47 Identities=21% Similarity=0.119 Sum_probs=40.7
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..+++++|.+.+||+++++++.+.+.+.+++ ..+++.||+||++.+.
T Consensus 282 ~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~--~~~~~~YG~tE~~~~~ 328 (523)
T PRK08316 282 TRDLSSLRKGYYGASIMPVEVLKELRERLPG--LRFYNCYGQTEIAPLA 328 (523)
T ss_pred cCCcccceEEEEcCCcCCHHHHHHHHHHcCC--CceeeeecccccCccc
Confidence 4567889999999999999999999998853 7899999999987654
No 60
>PRK07514 malonyl-CoA synthase; Validated
Probab=98.29 E-value=1.7e-06 Score=52.22 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=40.0
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..+++++|.++.||+++++++.+++.+.++ ..+++.||+||++...
T Consensus 265 ~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~ 310 (504)
T PRK07514 265 REAAAHMRLFISGSAPLLAETHREFQERTG---HAILERYGMTETNMNT 310 (504)
T ss_pred cccccceeeEEecCCCCCHHHHHHHHHHhC---Ccceeecccccccccc
Confidence 446678999999999999999999999887 7899999999987543
No 61
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=98.29 E-value=1.4e-06 Score=54.59 Aligned_cols=47 Identities=30% Similarity=0.618 Sum_probs=40.1
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH 54 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~ 54 (59)
..++++||.+.++|+++++++++++.+.++. +..+.+.||+||+++.
T Consensus 379 ~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~-~~~~~~~yG~TE~~~~ 425 (655)
T PRK03584 379 THDLSALRTIGSTGSPLPPEGFDWVYEHVKA-DVWLASISGGTDICSC 425 (655)
T ss_pred cCChhheEEEEEecCCCCHHHHHHHHHHhCC-CceEEeccChHhhhcc
Confidence 4678899999999999999999999998842 2678999999998643
No 62
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.29 E-value=1e-06 Score=54.10 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=39.8
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..++++||.+++||+++++++.+++.+.++ ..+++.||+||++.+.
T Consensus 319 ~~~~~~lr~v~~gg~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~ 364 (563)
T PRK06710 319 EYDISSIRACISGSAPLPVEVQEKFETVTG---GKLVEGYGLTESSPVT 364 (563)
T ss_pred cCChhhhhheeeCCCcCCHHHHHHHHHhhC---CCEecccccccCcccc
Confidence 345678999999999999999999988887 7899999999997643
No 63
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=98.29 E-value=2e-06 Score=51.96 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=40.0
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..++++++.++++|++++++..+++.+.++. +.+++.||+||++..+
T Consensus 254 ~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~--~~~~~~yG~tE~~~~~ 300 (502)
T TIGR01734 254 QENYPHLTHFLFCGEELPVKTAKALLERFPK--ATIYNTYGPTEATVAV 300 (502)
T ss_pred cccCCcccEEEEcCCcCCHHHHHHHHHHCCC--cEEEeCccCCcceEEE
Confidence 4467789999999999999999999998853 7899999999987533
No 64
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.28 E-value=2.1e-06 Score=52.79 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=39.9
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
.++++||.+++||+++++.+.+++++.++ ..+.+.||+||++..++
T Consensus 322 ~~~~~lr~~~~gg~~~~~~~~~~~~~~~g---~~~~~~YG~tE~~~~~~ 367 (560)
T PRK08974 322 LDFSSLKLSVGGGMAVQQAVAERWVKLTG---QYLLEGYGLTECSPLVS 367 (560)
T ss_pred CCccceeEEEecCccCCHHHHHHHHHHhC---CcEEeeecccccCceee
Confidence 45678999999999999999999998887 78999999999875543
No 65
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=98.28 E-value=1.7e-06 Score=50.58 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=37.4
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
.+++++|.+++||+++++++.+++.+ ++ +.+++.||+||++..+
T Consensus 148 ~~~~~l~~i~~gG~~l~~~~~~~~~~-~~---~~v~~~YG~TE~~~~~ 191 (358)
T PRK07824 148 AALAELDAVLVGGGPAPAPVLDAAAA-AG---INVVRTYGMSETSGGC 191 (358)
T ss_pred CCcccceEEEECCCCCCHHHHHHHHh-cC---CcEEecccCCccCCCc
Confidence 46788999999999999999998865 46 7899999999987543
No 66
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=98.28 E-value=1e-06 Score=55.71 Aligned_cols=42 Identities=29% Similarity=0.331 Sum_probs=33.6
Q ss_pred CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
.+||.+++||+|+++++.+.+ +.++. +.+++.||+||+++++
T Consensus 383 ~~lr~~~~gga~l~~~~~~~~-~~~~~--~~i~~~YG~TE~~~~~ 424 (660)
T PLN02430 383 GRLRLLISGGAPLSTEIEEFL-RVTSC--AFVVQGYGLTETLGPT 424 (660)
T ss_pred CeEEEEEECCCCCCHHHHHHH-HHhcC--CCeeeecchhhhhhce
Confidence 579999999999999986655 45542 5799999999987644
No 67
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=98.28 E-value=2e-06 Score=52.67 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=37.8
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..++++||.+++||+++++++.+.+.+. + +.+++.||+||++++.
T Consensus 298 ~~~~~~lr~i~~gG~~~~~~~~~~~~~~-~---~~l~~~YG~TE~~~~~ 342 (547)
T PRK06087 298 PADLSALRFFLCGGTTIPKKVARECQQR-G---IKLLSVYGSTESSPHA 342 (547)
T ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHc-C---CcEEEEecccccCCcc
Confidence 3466789999999999999998887654 6 7899999999987554
No 68
>PLN02246 4-coumarate--CoA ligase
Probab=98.28 E-value=1.7e-06 Score=52.89 Aligned_cols=47 Identities=23% Similarity=0.278 Sum_probs=40.1
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..+++++|.+++||+++++++.+++.+.+++ ..+.+.||+||++.++
T Consensus 294 ~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~--~~~~~~YG~tE~~~~~ 340 (537)
T PLN02246 294 KYDLSSIRMVLSGAAPLGKELEDAFRAKLPN--AVLGQGYGMTEAGPVL 340 (537)
T ss_pred ccCccceeEEEEecCcCCHHHHHHHHHHcCC--CeEeccccccccCccc
Confidence 3456789999999999999999999998853 6788999999997653
No 69
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=98.27 E-value=1e-06 Score=53.93 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=38.2
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHH---hCCCccceEeccccCcccceec
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHS---IGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~---~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
..++++||.+++||+++++++.+++.+. +|.....+++.||+||++.+++
T Consensus 268 ~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~ 320 (525)
T PRK05851 268 DVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVT 320 (525)
T ss_pred CCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEE
Confidence 3467889999999999999999998875 3310024889999999975443
No 70
>PRK06839 acyl-CoA synthetase; Validated
Probab=98.26 E-value=2.4e-06 Score=51.49 Aligned_cols=45 Identities=27% Similarity=0.276 Sum_probs=38.7
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..+++++|.+++||+++++++.+++.+. + +++.+.||+||++.++
T Consensus 260 ~~~~~~lr~~~~gG~~~~~~~~~~~~~~-g---~~~~~~YG~tE~~~~~ 304 (496)
T PRK06839 260 TTNLQSVRWFYNGGAPCPEELMREFIDR-G---FLFGQGFGMTETSPTV 304 (496)
T ss_pred cCCCcccceEEECCCCCCHHHHHHHHHh-C---CeeEeeccCCCCCcce
Confidence 3467889999999999999999998776 6 7899999999998543
No 71
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=98.26 E-value=1.9e-06 Score=52.91 Aligned_cols=47 Identities=21% Similarity=0.310 Sum_probs=40.4
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
..+++++|.+..||+++++.+.+++.+.++ +++.+.||+||++.+++
T Consensus 323 ~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~ 369 (557)
T PRK07059 323 KLDFSKLIVANGGGMAVQRPVAERWLEMTG---CPITEGYGLSETSPVAT 369 (557)
T ss_pred cCCchhheEEEeccccCCHHHHHHHHHHhC---CCeeeccccccccchhh
Confidence 345678999999999999999999998887 88999999999976543
No 72
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=98.25 E-value=1.7e-06 Score=52.49 Aligned_cols=44 Identities=32% Similarity=0.302 Sum_probs=39.0
Q ss_pred CCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 9 DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 9 ~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
+..++|.+.++|+++++++.+.|.+.++ +.+++.||+||++.++
T Consensus 276 ~~~~l~~~~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~tE~~~~~ 319 (508)
T TIGR02262 276 DQVRLRLCTSAGEALPAEVGQRWQARFG---VDIVDGIGSTEMLHIF 319 (508)
T ss_pred ccccceeEEEcCCCCCHHHHHHHHHHhC---CchhhCccccccCcee
Confidence 4568999999999999999999999887 7899999999998654
No 73
>PRK13390 acyl-CoA synthetase; Provisional
Probab=98.24 E-value=2.5e-06 Score=51.72 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=39.8
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..+++++|.++.+|+++++++.+.+.+.++ ..+++.||+||+++++
T Consensus 266 ~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~ 311 (501)
T PRK13390 266 RYDVSSLRAVIHAAAPCPVDVKHAMIDWLG---PIVYEYYSSTEAHGMT 311 (501)
T ss_pred cCChhhhheEEEcCCCCCHHHHHHHHHhcC---CceeeeecccccCceE
Confidence 346778999999999999999999988887 7899999999997543
No 74
>PRK06188 acyl-CoA synthetase; Validated
Probab=98.22 E-value=2.3e-06 Score=52.08 Aligned_cols=45 Identities=22% Similarity=0.206 Sum_probs=38.8
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
.+++++|.+.+||++++++....+.+.++ ..+++.||+||++..+
T Consensus 278 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~ 322 (524)
T PRK06188 278 RDLSSLETVYYGASPMSPVRLAEAIERFG---PIFAQYYGQTEAPMVI 322 (524)
T ss_pred CCCcceeEEEEcCCCCCHHHHHHHHHHhC---chhhheeCccccCCce
Confidence 46789999999999999998888888887 6789999999996444
No 75
>PRK07798 acyl-CoA synthetase; Validated
Probab=98.22 E-value=3.5e-06 Score=51.04 Aligned_cols=47 Identities=23% Similarity=0.216 Sum_probs=39.8
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..+++++|.+.+||+++++++.+++.+.+++ ..+++.||+||++.+.
T Consensus 292 ~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~--~~~~~~YG~tE~~~~~ 338 (533)
T PRK07798 292 PYDLSSLFAIASGGALFSPSVKEALLELLPN--VVLTDSIGSSETGFGG 338 (533)
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHHcCC--CeEEeeeccccccccc
Confidence 3467789999999999999999999988843 7899999999986443
No 76
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=98.20 E-value=2.4e-06 Score=53.79 Aligned_cols=48 Identities=25% Similarity=0.551 Sum_probs=39.4
Q ss_pred CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058 6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH 54 (59)
Q Consensus 6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~ 54 (59)
..+++++||.+.++|+++++++++++.+.++. +..+.+.||+||++++
T Consensus 379 ~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~-~~~~~~~yG~TE~~~~ 426 (652)
T TIGR01217 379 RTHDLSALQCVASTGSPLPPDGFRWVYDEIKA-DVWLASISGGTDICSC 426 (652)
T ss_pred ccCChhheeEEEeecCCCCHHHHHHHHHHhCC-CceEEeccCHHHHhcc
Confidence 34678999999999999999999999988862 1456789999997533
No 77
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=98.20 E-value=2.2e-06 Score=56.83 Aligned_cols=44 Identities=20% Similarity=0.251 Sum_probs=38.4
Q ss_pred CCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 9 DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 9 ~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
.+.+||.+++||+++++++.+++.+.++ +.+++.||+||++..+
T Consensus 715 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~---~~l~n~YG~TE~~~~~ 758 (1296)
T PRK10252 715 SCASLRQVFCSGEALPADLCREWQQLTG---APLHNLYGPTEAAVDV 758 (1296)
T ss_pred cCCCccEEEEecCCCCHHHHHHHHhcCC---CEEEeCCCcchhhhee
Confidence 4578999999999999999999988776 7899999999987543
No 78
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=98.19 E-value=4.2e-06 Score=50.62 Aligned_cols=45 Identities=16% Similarity=0.080 Sum_probs=39.0
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH 54 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~ 54 (59)
.+++++|.+.++|+++++++.+.+++.++. ..+++.||+||++.+
T Consensus 271 ~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~--~~~~~~YG~tE~~~~ 315 (515)
T TIGR03098 271 SAAPSLRYLTNSGGAMPRATLSRLRSFLPN--ARLFLMYGLTEAFRS 315 (515)
T ss_pred CCccceEEEEecCCcCCHHHHHHHHHHCCC--CeEeeeeccccccce
Confidence 466789999999999999999999998852 779999999998644
No 79
>PRK08315 AMP-binding domain protein; Validated
Probab=98.19 E-value=3.7e-06 Score=51.49 Aligned_cols=48 Identities=23% Similarity=0.176 Sum_probs=40.3
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
..++++||.++.+|+++++++.+.+.+.++. ..+.+.||+||++.+++
T Consensus 311 ~~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~--~~l~~~YG~tE~~~~~~ 358 (559)
T PRK08315 311 RFDLSSLRTGIMAGSPCPIEVMKRVIDKMHM--SEVTIAYGMTETSPVST 358 (559)
T ss_pred CCCchhhheeEecCCCCCHHHHHHHHHHcCC--cceeEEEccccccccee
Confidence 3467899999999999999999999988872 45899999999976543
No 80
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=98.19 E-value=2.3e-06 Score=54.04 Aligned_cols=42 Identities=17% Similarity=0.220 Sum_probs=33.4
Q ss_pred CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
.+||.+++||+|+++++.+ +.+.++. ..+++.||+||+++.+
T Consensus 383 ~~lr~~~~Ggapl~~~~~~-~~~~~~~--~~l~~~YG~TE~~~~~ 424 (660)
T PLN02861 383 GRVRLLLSGAAPLPRHVEE-FLRVTSC--SVLSQGYGLTESCGGC 424 (660)
T ss_pred CcEEEEEECCCCCCHHHHH-HHHHHcC--CCeeEecchhhhhhce
Confidence 4789999999999999754 6666662 4689999999987544
No 81
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=98.18 E-value=5e-06 Score=51.02 Aligned_cols=42 Identities=21% Similarity=0.293 Sum_probs=37.9
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccc
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETG 52 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~ 52 (59)
.++.+||.+.+||+++++++.+++.+.++ +.+.+.||+||+.
T Consensus 297 ~~~~~l~~v~~gg~~l~~~~~~~~~~~~g---~~~~~~YG~tE~~ 338 (536)
T PRK10946 297 AQLASLKLLQVGGARLSETLARRIPAELG---CQLQQVFGMAEGL 338 (536)
T ss_pred ccccceeEEEECCCCCCHHHHHHHHHhcC---CeEEEeecccccc
Confidence 45678999999999999999999988888 8899999999975
No 82
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=98.17 E-value=1.8e-06 Score=54.75 Aligned_cols=41 Identities=20% Similarity=0.230 Sum_probs=34.1
Q ss_pred CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
++||.+++||+++++++.++++..++ .++++||+||++.+.
T Consensus 428 ~~lr~i~~GGa~l~~~~~~~~~~~~~----~l~~~YG~TEt~~~~ 468 (700)
T PTZ00216 428 GRVRAMLSGGGPLSAATQEFVNVVFG----MVIQGWGLTETVCCG 468 (700)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHhh----hHhhccCcccccccc
Confidence 57999999999999999887766553 688999999997543
No 83
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.17 E-value=4.8e-06 Score=51.46 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=38.4
Q ss_pred CCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 9 DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 9 ~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
+..+||.++.+|+++++++.+++.+.++ +++++.||+||++.++
T Consensus 296 ~~~~l~~~~~gG~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~ 339 (576)
T PRK05620 296 ERMSLQEIYVGGSAVPPILIKAWEERYG---VDVVHVWGMTETSPVG 339 (576)
T ss_pred ccCceeEEEEcCCCCCHHHHHHHHHHhC---Cceeeeccccccccce
Confidence 3457999999999999999999988887 7899999999997543
No 84
>TIGR03335 F390_ftsA coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
Probab=98.17 E-value=3.6e-06 Score=51.24 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=36.3
Q ss_pred CCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccc
Q psy10058 10 LNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETG 52 (59)
Q Consensus 10 ~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~ 52 (59)
..+||.++++|++++++..+++++.+| +.+++.||+||++
T Consensus 203 ~~~lr~ii~gGE~l~~~~r~~ie~~~g---~~v~~~YG~TE~~ 242 (445)
T TIGR03335 203 ESSIRRLVVGGESFADESRNYVEELWG---CEVYNTYGSTEGT 242 (445)
T ss_pred cCcceEEEEcCCCCCHHHHHHHHHHhC---CcEEecCChhhhh
Confidence 358999999999999999999988888 8999999999985
No 85
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=98.16 E-value=3.5e-06 Score=50.60 Aligned_cols=39 Identities=21% Similarity=0.076 Sum_probs=35.9
Q ss_pred CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccc
Q psy10058 11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETG 52 (59)
Q Consensus 11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~ 52 (59)
.+||.++++|++++++..+++++.++ +.+.+.||+||++
T Consensus 195 ~~lr~i~~~ge~l~~~~~~~i~~~~g---~~v~~~YG~tE~~ 233 (422)
T TIGR02155 195 TSLQVGIFGAEPWTNAMRKEIEARLG---MKATDIYGLSEVI 233 (422)
T ss_pred CceEEEEEeCCcCCHHHHHHHHHHhC---CceEecccchhhc
Confidence 57999999999999999999999998 8899999999984
No 86
>PRK12467 peptide synthase; Provisional
Probab=98.15 E-value=3.1e-06 Score=61.27 Aligned_cols=48 Identities=21% Similarity=0.199 Sum_probs=41.0
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
..++++||.+++||+++++++.+++.+.+++ +.+++.||+||++..++
T Consensus 3347 ~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~--~~l~n~YG~TE~~~~~~ 3394 (3956)
T PRK12467 3347 GADCASLDIYVFGGEAVPPAAFEQVKRKLKP--RGLTNGYGPTEAVVTVT 3394 (3956)
T ss_pred ccCCCCceEEEEecCCCCHHHHHHHHHhCCC--CEEEeCcccchhEeeeE
Confidence 4567889999999999999999999888753 77999999999976543
No 87
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=98.14 E-value=2.8e-06 Score=51.55 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=36.6
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
.++++||.+++||+++++++.+.+.+ ++ ..+.+.||+||++..+
T Consensus 227 ~~l~~l~~i~~gG~~l~~~~~~~~~~-~~---~~l~~~YG~TE~~~~~ 270 (452)
T PRK07445 227 QWLAQFRTILLGGAPAWPSLLEQARQ-LQ---LRLAPTYGMTETASQI 270 (452)
T ss_pred hhhhcceEEEECCccCCHHHHHHHHh-cC---CeEecCcchhhhcccc
Confidence 34678999999999999999888764 46 7899999999987543
No 88
>PLN02614 long-chain acyl-CoA synthetase
Probab=98.14 E-value=2.9e-06 Score=53.69 Aligned_cols=42 Identities=14% Similarity=0.355 Sum_probs=33.6
Q ss_pred CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
++||.+++||+|+++++ .++.+.++. +.+++.||+||++++.
T Consensus 386 ~~lr~~~~Gga~l~~~~-~~~~~~~~~--~~i~~~YG~TE~~~~~ 427 (666)
T PLN02614 386 GNVRIILSGAAPLASHV-ESFLRVVAC--CHVLQGYGLTESCAGT 427 (666)
T ss_pred CcEEEEEEcCCCCCHHH-HHHHHHhcC--CCEEeeCchHhhhhhe
Confidence 57999999999999875 556666642 7899999999987543
No 89
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=98.12 E-value=3.5e-06 Score=50.69 Aligned_cols=44 Identities=25% Similarity=0.389 Sum_probs=34.3
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
.++++++. +++|+++++++++++++. +. ..+++.||+||+++++
T Consensus 203 ~~l~slr~-i~gGa~l~~~l~~~~~~~-g~--~~v~~~YG~TEt~~i~ 246 (386)
T TIGR02372 203 YRLPGVVG-VSSGAPSTAATWRCLLAA-GL--ARLLEVYGATETGGIG 246 (386)
T ss_pred cCCCccee-EecCCCCCHHHHHHHHHh-cc--cchhheeccccccccc
Confidence 45677775 677899999999999775 51 3588999999997654
No 90
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=98.12 E-value=3.1e-06 Score=52.76 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=37.4
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHh---CCCccceEeccccCccccee
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSI---GGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~---~~~~~~i~~~yG~TE~~~~~ 55 (59)
..++++|| +.+||+++++++.+++.+.+ |.....+.+.||+||++..+
T Consensus 314 ~~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~ 364 (612)
T PRK12476 314 DIDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFV 364 (612)
T ss_pred CcchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheee
Confidence 34678899 99999999999999999887 31012378999999987543
No 91
>PRK09088 acyl-CoA synthetase; Validated
Probab=98.10 E-value=7e-06 Score=49.59 Aligned_cols=43 Identities=28% Similarity=0.338 Sum_probs=36.0
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH 54 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~ 54 (59)
.++++||.+++||++++.+..+.+.+. + +++++.||+||++.+
T Consensus 249 ~~~~~l~~~~~gG~~~~~~~~~~~~~~-g---~~v~~~YG~TE~~~~ 291 (488)
T PRK09088 249 AALRHLTALFTGGAPHAAEDILGWLDD-G---IPMVDGFGMSEAGTV 291 (488)
T ss_pred cccccceEEEecCCCCCHHHHHHHHHh-C---Cceeeeecccccccc
Confidence 456789999999999998888777654 6 789999999999754
No 92
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=98.10 E-value=5.7e-06 Score=50.79 Aligned_cols=41 Identities=17% Similarity=0.304 Sum_probs=35.9
Q ss_pred ccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058 12 SLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH 54 (59)
Q Consensus 12 ~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~ 54 (59)
++|.+.++|+++++++.+++.+.+++ ..+++.||+||++.+
T Consensus 304 ~l~~i~~~g~~l~~~~~~~~~~~~~~--~~~~~~YG~tE~~~~ 344 (546)
T PLN02330 304 KLQAIMTAAAPLAPELLTAFEAKFPG--VQVQEAYGLTEHSCI 344 (546)
T ss_pred eeeeEEEcCCcCCHHHHHHHHHHcCC--CeEEecccccccccc
Confidence 47889999999999999999999842 889999999998644
No 93
>KOG1177|consensus
Probab=98.09 E-value=4.1e-06 Score=52.26 Aligned_cols=50 Identities=28% Similarity=0.289 Sum_probs=42.6
Q ss_pred CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceecc
Q psy10058 6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLT 57 (59)
Q Consensus 6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~ 57 (59)
.+++++++|..+.||+|.++++.+.+...+.- ..+...||+||++++.+.
T Consensus 345 ~~~~~s~lr~~vigGa~~s~eLlk~iv~~~~m--~~i~v~YG~TEts~v~~~ 394 (596)
T KOG1177|consen 345 QQVDLSSLRKGVIGGAPVSPELLKLIVNQMNM--KDIAVAYGLTETSPVLFM 394 (596)
T ss_pred ccCchhhhhhheeCCCCCCHHHHHHHHHhhCc--eeeEEEeeccccCcceee
Confidence 46789999999999999999999999887752 347789999999977654
No 94
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=97.98 E-value=1.4e-05 Score=53.61 Aligned_cols=46 Identities=22% Similarity=0.142 Sum_probs=38.7
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
.++++||.++.||+++++...+++.+..++ +.+++.||+||++..+
T Consensus 526 ~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~--~~l~n~YG~TE~~~~~ 571 (1389)
T TIGR03443 526 TPIPSLHHAFFVGDILTKRDCLRLQTLAEN--VCIVNMYGTTETQRAV 571 (1389)
T ss_pred ccCCCccEEEEecccCCHHHHHHHHHhCCC--CEEEECccCCccceeE
Confidence 457789999999999999999988877653 7899999999997543
No 95
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=97.98 E-value=1.6e-05 Score=47.23 Aligned_cols=42 Identities=24% Similarity=0.154 Sum_probs=35.6
Q ss_pred CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
.++|.+.++|+++++++.+++.+ .+ ..+++.||+||++..++
T Consensus 219 ~~l~~~~~~G~~~~~~~~~~~~~-~~---~~~~~~YG~tE~~~~~~ 260 (436)
T TIGR01923 219 ENLRKILLGGSAIPAPLIEEAQQ-YG---LPIYLSYGMTETCSQVT 260 (436)
T ss_pred CceEEEEECCCCCCHHHHHHHHH-hC---CceeeEecCCccchhcc
Confidence 57999999999999999988765 46 78999999999976543
No 96
>PRK12316 peptide synthase; Provisional
Probab=97.96 E-value=1.1e-05 Score=59.59 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=38.6
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccc
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGG 53 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~ 53 (59)
.++++||.+++||+++++++.+++.+.+++ +.+++.||+||++.
T Consensus 767 ~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~--~~l~n~YG~TE~~~ 810 (5163)
T PRK12316 767 ASCTSLRRIVCSGEALPADAQEQVFAKLPQ--AGLYNLYGPTEAAI 810 (5163)
T ss_pred ccCCCccEEEEeeccCCHHHHHHHHHhCCC--CeEEeCcCcChhee
Confidence 467789999999999999999999887753 78999999999974
No 97
>PRK05850 acyl-CoA synthetase; Validated
Probab=97.96 E-value=8.2e-06 Score=50.35 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=37.4
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCC---CccceEeccccCcccce
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGG---GKCSIVDTFWQTETGGH 54 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~---~~~~i~~~yG~TE~~~~ 54 (59)
.+++++|.+.+||+++++++.+++.+.++. ....+.+.||+||++..
T Consensus 285 ~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~ 334 (578)
T PRK05850 285 LDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVY 334 (578)
T ss_pred cchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhh
Confidence 467789999999999999999999887631 01257899999998643
No 98
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.96 E-value=1.7e-05 Score=48.73 Aligned_cols=42 Identities=24% Similarity=0.216 Sum_probs=36.9
Q ss_pred ccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 12 SLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 12 ~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
+||.+.+||+++++++.+++.+.+++ ..+++.||+||++.+.
T Consensus 291 ~lr~i~~gg~~~~~~~~~~~~~~~~~--~~l~~~YG~tE~~~~~ 332 (542)
T PRK07786 291 ALRVLSWGAAPASDTLLRQMAATFPE--AQILAAFGQTEMSPVT 332 (542)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHcCC--CeEEeeecccccccce
Confidence 68999999999999999999998853 7899999999997543
No 99
>PRK12467 peptide synthase; Provisional
Probab=97.96 E-value=1.7e-05 Score=57.75 Aligned_cols=46 Identities=24% Similarity=0.246 Sum_probs=39.6
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
.++++||.+++||+++++++.++|.+.++. ..+++.||.||++..+
T Consensus 1831 ~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~--~~l~n~YG~TE~t~~~ 1876 (3956)
T PRK12467 1831 EHPLSLRRVVCGGEALEVEALRPWLERLPD--TGLFNLYGPTETAVDV 1876 (3956)
T ss_pred ccCCCceEEEEccccCCHHHHHHHHHhCCC--CeEEeCccCCcCEEeE
Confidence 456789999999999999999999888763 6799999999997544
No 100
>PRK05857 acyl-CoA synthetase; Validated
Probab=97.91 E-value=2.2e-05 Score=48.27 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=35.5
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH 54 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~ 54 (59)
..+++++|.+.+||++++....++ .+.++ ..+.+.||+||++..
T Consensus 282 ~~~~~~lr~~~~gG~~~~~~~~~~-~~~~g---~~i~~~YG~TE~~~~ 325 (540)
T PRK05857 282 NATVPSLRLVGYGGSRAIAADVRF-IEATG---VRTAQVYGLSETGCT 325 (540)
T ss_pred CCcCccceEEEEcCccCCchhHHH-HHHhC---CeeecccCCCcCCce
Confidence 356789999999999988777654 45667 789999999998743
No 101
>PRK12316 peptide synthase; Provisional
Probab=97.90 E-value=2.1e-05 Score=58.14 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=39.3
Q ss_pred CCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 9 DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 9 ~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
++++||.+++||+++++++.+++.+.+.+ +.+++.||+||++..++
T Consensus 4807 ~~~~lr~v~~gGe~l~~~~~~~~~~~~~~--~~l~n~YG~TE~~~~~~ 4852 (5163)
T PRK12316 4807 EPPSLRVYCFGGEAVAQASYDLAWRALKP--VYLFNGYGPTETTVTVL 4852 (5163)
T ss_pred CCCCccEEEEecccCCHHHHHHHHHhCCC--CEEEecccCccceEEEE
Confidence 67899999999999999999888777653 78999999999986543
No 102
>PRK05691 peptide synthase; Validated
Probab=97.90 E-value=1.5e-05 Score=58.27 Aligned_cols=46 Identities=26% Similarity=0.221 Sum_probs=40.0
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
.++++||.+++||+++++++.+++.+.+++ +.+++.||.||++..+
T Consensus 1385 ~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~--~~l~n~YG~TE~~~~~ 1430 (4334)
T PRK05691 1385 AACTSLRRLFSGGEALPAELRNRVLQRLPQ--VQLHNRYGPTETAINV 1430 (4334)
T ss_pred ccCCcccEEEEeecCCCHHHHHHHHHhCCC--cEEEeCCCcChheeee
Confidence 467889999999999999999999988853 7899999999997544
No 103
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=97.87 E-value=2.7e-05 Score=46.86 Aligned_cols=43 Identities=21% Similarity=0.010 Sum_probs=35.8
Q ss_pred CCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 10 LNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 10 ~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
..+||.+++||+++++.+.+++.+ ++ ..+.+.||+||++...+
T Consensus 239 ~~~l~~i~~gG~~~~~~~~~~~~~-~g---~~~~~~YG~tE~~~~~~ 281 (458)
T PRK09029 239 PLSLKAVLLGGAAIPVELTEQAEQ-QG---IRCWCGYGLTEMASTVC 281 (458)
T ss_pred CCcceEEEECCCCCCHHHHHHHHH-cC---CcEeccccccccCccee
Confidence 347999999999999999988865 46 78999999999976543
No 104
>PRK07638 acyl-CoA synthetase; Validated
Probab=97.86 E-value=4.4e-05 Score=46.21 Aligned_cols=44 Identities=11% Similarity=-0.047 Sum_probs=35.6
Q ss_pred CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
.+.+.++++|++++++..+++.+.+++ +.+++.||+||++.++.
T Consensus 253 ~~~~~~~~~G~~l~~~~~~~~~~~~~~--~~~~~~YG~tE~~~~~~ 296 (487)
T PRK07638 253 ENKMKIISSGAKWEAEAKEKIKNIFPY--AKLYEFYGASELSFVTA 296 (487)
T ss_pred CceeEEEEcCCCCCHHHHHHHHHHcCC--CeEEEEecCCccCceEE
Confidence 345566788889999999999998853 78999999999986543
No 105
>PRK09192 acyl-CoA synthetase; Validated
Probab=97.85 E-value=1.8e-05 Score=49.09 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=38.5
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCC---ccceEeccccCccccee
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGG---KCSIVDTFWQTETGGHV 55 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~---~~~i~~~yG~TE~~~~~ 55 (59)
..+++++|.+..||+++++++.+.+.+.++.. ...+++.||+||++..+
T Consensus 295 ~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~ 346 (579)
T PRK09192 295 ELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAV 346 (579)
T ss_pred ccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEE
Confidence 35678999999999999999999998876310 02378999999997544
No 106
>PRK05691 peptide synthase; Validated
Probab=97.85 E-value=3.3e-05 Score=56.60 Aligned_cols=46 Identities=22% Similarity=0.354 Sum_probs=39.5
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..+++||.++.||+++++++.+.|.+.+++ +.+++.||.||++..+
T Consensus 3980 ~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~--~~l~n~YG~TE~t~~~ 4025 (4334)
T PRK05691 3980 QALDGLRWMLPTGEAMPPELARQWLQRYPQ--IGLVNAYGPAECSDDV 4025 (4334)
T ss_pred ccCCCceEEEecCCcCCHHHHHHHHHhCCC--CeEEeCccCccceeEE
Confidence 356789999999999999999999887653 7899999999998644
No 107
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=97.84 E-value=3.8e-05 Score=46.26 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=35.2
Q ss_pred CCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058 10 LNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH 54 (59)
Q Consensus 10 ~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~ 54 (59)
..+||.++.+|+++++...+++.+. + +.+.+.||+||++..
T Consensus 253 ~~~lr~~~~~g~~~~~~~~~~~~~~-~---~~~~~~YG~tE~~~~ 293 (483)
T PRK03640 253 PSSFRCMLLGGGPAPKPLLEQCKEK-G---IPVYQSYGMTETASQ 293 (483)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHh-C---CCeeeeeccCccccc
Confidence 4689999999999999999888764 6 789999999998653
No 108
>PLN02479 acetate-CoA ligase
Probab=97.83 E-value=3.3e-05 Score=47.81 Aligned_cols=41 Identities=20% Similarity=0.197 Sum_probs=35.3
Q ss_pred CCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccc
Q psy10058 9 DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGG 53 (59)
Q Consensus 9 ~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~ 53 (59)
++++++.+.++|+++++.+.+++.+. + ..+++.||+||+++
T Consensus 308 ~~~~l~~~~~~G~~~~~~~~~~~~~~-~---~~~~~~yG~tE~~~ 348 (567)
T PLN02479 308 PLPRVVHVMTAGAAPPPSVLFAMSEK-G---FRVTHTYGLSETYG 348 (567)
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhc-C---Cceecccccccccc
Confidence 56789999999999999999988765 6 78999999999853
No 109
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=97.83 E-value=2.8e-05 Score=47.89 Aligned_cols=43 Identities=28% Similarity=0.213 Sum_probs=38.9
Q ss_pred CCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058 9 DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH 54 (59)
Q Consensus 9 ~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~ 54 (59)
+-.+|+.+++|+++.+++..+.+.+.+| +..++.||+||..++
T Consensus 208 ~~~~lk~~i~gaE~~see~R~~ie~~~g---~~~~diYGltE~~g~ 250 (438)
T COG1541 208 DKLSLKKGIFGAEPWSEEMRKVIENRFG---CKAFDIYGLTEGFGP 250 (438)
T ss_pred hhcceeEEEEecccCCHHHHHHHHHHhC---CceeeccccccccCC
Confidence 3457999999999999999999999999 889999999999665
No 110
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.77 E-value=5e-05 Score=46.61 Aligned_cols=49 Identities=27% Similarity=0.274 Sum_probs=38.1
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHH---hCCCccceEeccccCccccee
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHS---IGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~---~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..++++||.++++|+++++...+++.+. ++.....+++.||+||++..+
T Consensus 272 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~ 323 (545)
T PRK07768 272 AFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAV 323 (545)
T ss_pred CCCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEE
Confidence 3677899999999999999999988774 441012488999999997543
No 111
>PLN03102 acyl-activating enzyme; Provisional
Probab=97.72 E-value=7.3e-05 Score=46.54 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=34.0
Q ss_pred CCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058 10 LNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH 54 (59)
Q Consensus 10 ~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~ 54 (59)
.++++.+.+||+++++.+.+++.+ ++ ..+++.||+||+++.
T Consensus 299 ~~~~~~~~~gg~~~~~~~~~~~~~-~g---~~i~~~YG~tE~~~~ 339 (579)
T PLN03102 299 RSGPVHVLTGGSPPPAALVKKVQR-LG---FQVMHAYGLTEATGP 339 (579)
T ss_pred cccceEEEECCCCCCHHHHHHHHH-cC---CeEEeecCccccCcc
Confidence 456788899999999999888854 56 789999999999754
No 112
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme. Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.
Probab=97.69 E-value=8e-05 Score=45.74 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=34.3
Q ss_pred CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCc
Q psy10058 11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTE 50 (59)
Q Consensus 11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE 50 (59)
..++.++++|++++++..+.+++.|| +++++.||.||
T Consensus 212 ~~~k~ii~~~E~l~~~~r~~Ie~~fg---~~V~~~YG~tE 248 (430)
T TIGR02304 212 IKPKKVISVAEVLEPQDRELIRNVFK---NTVHQIYQATE 248 (430)
T ss_pred CCceEEEEccCCCCHHHHHHHHHHhC---CCeeEccCCch
Confidence 36889999999999999999999998 89999999999
No 113
>PRK07868 acyl-CoA synthetase; Validated
Probab=97.67 E-value=0.0001 Score=48.87 Aligned_cols=43 Identities=14% Similarity=0.273 Sum_probs=34.4
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH 54 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~ 54 (59)
.++++||.+.. +++++++++++.+.+++ +.+++.||+||++.+
T Consensus 717 ~~~~slr~~~g--~gl~~~l~~~~~~~~~~--~~l~~~YG~TE~~~~ 759 (994)
T PRK07868 717 HGNHPVRLFIG--SGMPTGLWERVVEAFAP--AHVVEFFATTDGQAV 759 (994)
T ss_pred CCCCceEEEec--CCCCHHHHHHHHHHhCc--hheeeeeeccccccc
Confidence 45678997763 34899999999999874 789999999998643
No 114
>PRK08308 acyl-CoA synthetase; Validated
Probab=97.61 E-value=8.4e-05 Score=44.35 Aligned_cols=39 Identities=10% Similarity=0.164 Sum_probs=33.4
Q ss_pred ccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058 12 SLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH 54 (59)
Q Consensus 12 ~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~ 54 (59)
+++.++++|+++++++.+++++. + ..+++.||+||++.+
T Consensus 213 ~l~~~~~~G~~l~~~~~~~~~~~-~---~~~~~~YG~tE~~~~ 251 (414)
T PRK08308 213 QFHAVMTSGTPLPEAWFYKLRER-T---TYMMQQYGCSEAGCV 251 (414)
T ss_pred cccEEEEccCCCCHHHHHHHHHh-C---ChhhhccCccccCCe
Confidence 68888999999999999988776 4 578999999999743
No 115
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=97.61 E-value=0.00017 Score=44.51 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=34.1
Q ss_pred CCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 9 DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 9 ~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
+.+++|.++.++ .++++.+++.+.++ .++++.||+||++.++.
T Consensus 292 ~~~~l~~~~~g~--~~~~~~~~~~~~~~---~~v~~~YG~tE~~~~~~ 334 (542)
T PRK06155 292 RAHRVRVALGPG--VPAALHAAFRERFG---VDLLDGYGSTETNFVIA 334 (542)
T ss_pred ccCceEEEEEcC--CCHHHHHHHHHHcC---CCEEeeecccccCcccc
Confidence 456788777655 46888888988888 78999999999976543
No 116
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=97.32 E-value=0.00055 Score=41.77 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=33.4
Q ss_pred CCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 10 LNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 10 ~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
..+++.+..+ .+++++...++.+.++ ..+++.||+||++..++
T Consensus 287 ~~~l~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~ 329 (517)
T PRK08008 287 QHCLREVMFY-LNLSDQEKDAFEERFG---VRLLTSYGMTETIVGII 329 (517)
T ss_pred cccceeeEEe-cCCCHHHHHHHHHHhC---CeEEeeccccccccccc
Confidence 3457766664 4788899998988887 88999999999975443
No 117
>PRK07867 acyl-CoA synthetase; Validated
Probab=97.31 E-value=0.00049 Score=42.46 Aligned_cols=40 Identities=30% Similarity=0.434 Sum_probs=29.9
Q ss_pred CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
+++|. +.||+++++.. .++.+.++ +++++.||+||++.++
T Consensus 267 ~~lr~-~~gg~~~~~~~-~~~~~~~g---~~l~~~YG~TE~~~~~ 306 (529)
T PRK07867 267 NPLRI-VYGNEGAPGDI-ARFARRFG---CVVVDGFGSTEGGVAI 306 (529)
T ss_pred cceEE-EecCCCChHHH-HHHHHHhC---CcEEEeeccccccccc
Confidence 46774 45777776654 66777887 7899999999987543
No 118
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.31 E-value=0.0001 Score=45.61 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=40.8
Q ss_pred CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccc
Q psy10058 6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETG 52 (59)
Q Consensus 6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~ 52 (59)
...+++|||.+..||+.+++...+++...+| |.+-+.|||.|--
T Consensus 300 ~~~~LsSLrllQVGGarl~~~~Arrv~~~lg---C~LQQVFGMAEGL 343 (542)
T COG1021 300 ERADLSSLRLLQVGGARLSATLARRVPAVLG---CQLQQVFGMAEGL 343 (542)
T ss_pred ccCCchheeEEeecCcccCHHHHhhchhhhC---chHHHHhhhhhhh
Confidence 5678999999999999999999999999999 8999999999864
No 119
>PRK08162 acyl-CoA synthetase; Validated
Probab=97.31 E-value=0.00064 Score=41.75 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=31.7
Q ss_pred CCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccc
Q psy10058 10 LNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGG 53 (59)
Q Consensus 10 ~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~ 53 (59)
+.+++.++++|++++++..+++.+ ++ ..+++.||+||+++
T Consensus 295 ~~~~~~~~~~g~~~~~~~~~~~~~-~~---~~~~~~YG~tE~~~ 334 (545)
T PRK08162 295 IDHPVHAMVAGAAPPAAVIAKMEE-IG---FDLTHVYGLTETYG 334 (545)
T ss_pred CccceEEEECCCCCCHHHHHHHHH-hC---CceeecccccccCc
Confidence 345566778889999999888765 46 78999999999853
No 120
>PRK06164 acyl-CoA synthetase; Validated
Probab=97.18 E-value=0.00068 Score=41.60 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=32.8
Q ss_pred CCCCCccceeeecC-CCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 7 KHDLNSLRVLGSVG-EPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 7 ~~~~~~lr~~~~~g-~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..++++++.+..++ .+...++.+++.+. + +.+++.||+||++.++
T Consensus 290 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~YG~tE~~~~~ 335 (540)
T PRK06164 290 RADFPSARLFGFASFAPALGELAALARAR-G---VPLTGLYGSSEVQALV 335 (540)
T ss_pred cCCCcceeeeeeccCCcchHHHHHHHhhc-C---Cceecceeecccccee
Confidence 45678888776655 56666676766554 5 7899999999997654
No 121
>PRK13388 acyl-CoA synthetase; Provisional
Probab=97.17 E-value=0.00091 Score=41.36 Aligned_cols=41 Identities=27% Similarity=0.440 Sum_probs=30.9
Q ss_pred CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
.+++.+ . |++++++...++.+.++ ..+++.||+||++.++.
T Consensus 265 ~~l~~~-~-G~~~~~~~~~~~~~~~~---~~l~~~YG~tE~~~~~~ 305 (540)
T PRK13388 265 NPLRVA-F-GNEASPRDIAEFSRRFG---CQVEDGYGSSEGAVIVV 305 (540)
T ss_pred cceEEE-E-CCCCCHHHHHHHHHHhC---Cceecccccccccceee
Confidence 355533 3 55667888888888887 78999999999976543
No 122
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=97.14 E-value=0.0012 Score=41.22 Aligned_cols=41 Identities=20% Similarity=0.442 Sum_probs=31.7
Q ss_pred CCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058 10 LNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH 54 (59)
Q Consensus 10 ~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~ 54 (59)
..++|.+ .|+++++++.+++.+.++. ..+++.||+||++..
T Consensus 313 ~~~l~~~--~g~~l~~~~~~~~~~~~~~--~~l~~~YG~tE~~~~ 353 (600)
T PRK08279 313 DHRLRLM--IGNGLRPDIWDEFQQRFGI--PRILEFYAASEGNVG 353 (600)
T ss_pred CcceeEE--ecCCCCHHHHHHHHHHhCc--ceeeeeeccccccee
Confidence 3456654 4677999999999999872 458999999998743
No 123
>PRK06178 acyl-CoA synthetase; Validated
Probab=96.67 E-value=0.0042 Score=38.48 Aligned_cols=45 Identities=27% Similarity=0.302 Sum_probs=33.1
Q ss_pred CCCCCccceeee--cCCCCCHHHHHHHHHHhCCCccceE-eccccCcccce
Q psy10058 7 KHDLNSLRVLGS--VGEPINPEAWQWYYHSIGGGKCSIV-DTFWQTETGGH 54 (59)
Q Consensus 7 ~~~~~~lr~~~~--~g~~~~~~~~~~~~~~~~~~~~~i~-~~yG~TE~~~~ 54 (59)
..++++++.+.. .+++++++..+++++.++ ..++ +.||+||++..
T Consensus 321 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~YG~tE~~~~ 368 (567)
T PRK06178 321 EYDLSSLRQVRVVSFVKKLNPDYRQRWRALTG---SVLAEAAWGMTETHTC 368 (567)
T ss_pred CCCcchheeeeeccccccCCHHHHHHHHHHhC---Cccccccccccccccc
Confidence 345667776543 347899999999998887 4555 57999998654
No 124
>KOG1179|consensus
Probab=95.26 E-value=0.037 Score=35.79 Aligned_cols=44 Identities=20% Similarity=0.405 Sum_probs=33.0
Q ss_pred CCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 9 DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 9 ~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
+.+.+|...-.| +-+++|+.+.+.||. ..+.+.||.||.....+
T Consensus 355 r~HkVRla~GNG--LR~diW~~Fv~RFg~--~~IgE~YgaTEgn~~~~ 398 (649)
T KOG1179|consen 355 RQHKVRLAYGNG--LRPDIWQQFVKRFGI--IKIGEFYGATEGNSNLV 398 (649)
T ss_pred cCceEEEEecCC--CCchHHHHHHHHcCC--CeEEEEeccccCcceee
Confidence 345677654444 669999999999994 56899999999875443
No 125
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.57 E-value=0.23 Score=31.46 Aligned_cols=40 Identities=23% Similarity=0.140 Sum_probs=32.3
Q ss_pred ccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccc
Q psy10058 12 SLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETG 52 (59)
Q Consensus 12 ~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~ 52 (59)
.+|.+..+|+.++..+...+...... ...+.+.||-||+.
T Consensus 486 ~lr~~~~gGe~l~~~~~~~~~~~~~~-~~~l~~~ygpTe~~ 525 (642)
T COG1020 486 RLRQLLSGGEALPLALVQRLLQLAAL-ARRLLNLYGPTEAT 525 (642)
T ss_pred cccEEEEcCCCCCHHHHHHHHHhccc-cceEeeccCccHHh
Confidence 48999999999999999988776531 15688999999954
No 126
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria. LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence
Probab=90.03 E-value=0.46 Score=29.05 Aligned_cols=43 Identities=21% Similarity=0.197 Sum_probs=27.4
Q ss_pred cceeeecC------CCCC-HHHHHHHHHHhCC-CccceEeccccCccccee
Q psy10058 13 LRVLGSVG------EPIN-PEAWQWYYHSIGG-GKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 13 lr~~~~~g------~~~~-~~~~~~~~~~~~~-~~~~i~~~yG~TE~~~~~ 55 (59)
.+.+.+|| +.++ ++..+.+.+.+|- ....+++.|||||.....
T Consensus 223 s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~ 273 (365)
T PF04443_consen 223 SIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQA 273 (365)
T ss_pred CEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhh
Confidence 44555665 3454 5666777777871 112588999999976543
No 127
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=87.48 E-value=0.74 Score=20.36 Aligned_cols=23 Identities=17% Similarity=0.201 Sum_probs=19.9
Q ss_pred ceeeecCCCCCHHHHHHHHHHhC
Q psy10058 14 RVLGSVGEPINPEAWQWYYHSIG 36 (59)
Q Consensus 14 r~~~~~g~~~~~~~~~~~~~~~~ 36 (59)
+.+.++|.|++.+..+.++..++
T Consensus 22 ~wvSf~GrPltdevK~a~k~i~~ 44 (49)
T PF06543_consen 22 KWVSFDGRPLTDEVKEAMKLIFG 44 (49)
T ss_pred HheeeCCeeCCHHHHHHHHHHHh
Confidence 35778999999999999988887
No 128
>PF00818 Ice_nucleation: Ice nucleation protein repeat; InterPro: IPR000258 Certain Gram-negative bacteria express proteins that enable them to promote nucleation of ice at relatively high temperatures (above -5C) [, ]. These proteins are localised at the outer membrane surface and can cause frost damage to many plants. The primary structure of the proteins contains a highly repetitive domain that dominates the sequence. The domain comprises a number of 48-residue repeats, which themselves contain 3 blocks of 16 residues, the first 8 of which are identical. It is thought that the repetitive domain may be responsible for aligning water molecules in the seed crystal. [.........48.residues.repeated.domain..........] / / | | \ \ AGYGSTxTagxxssli AGYGSTxTagxxsxlt AGYGSTxTaqxxsxlt [16.residues...] [16.residues...] [16.residues...] ; GO: 0009279 cell outer membrane
Probab=72.00 E-value=1.8 Score=14.79 Aligned_cols=9 Identities=33% Similarity=0.519 Sum_probs=6.2
Q ss_pred ccccCcccc
Q psy10058 45 TFWQTETGG 53 (59)
Q Consensus 45 ~yG~TE~~~ 53 (59)
+||.|++..
T Consensus 1 GYGSTqTA~ 9 (16)
T PF00818_consen 1 GYGSTQTAG 9 (16)
T ss_pred CCCcccccC
Confidence 488887753
No 129
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=56.64 E-value=20 Score=19.21 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=8.7
Q ss_pred ceeeecCCCCC
Q psy10058 14 RVLGSVGEPIN 24 (59)
Q Consensus 14 r~~~~~g~~~~ 24 (59)
-..++||+|+-
T Consensus 68 gvt~sGGEPl~ 78 (154)
T PRK11121 68 GLSLSGGDPLH 78 (154)
T ss_pred cEEEECCCccc
Confidence 35779999995
No 130
>PF11208 DUF2992: Protein of unknown function (DUF2992); InterPro: IPR016787 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=46.26 E-value=37 Score=18.14 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=18.5
Q ss_pred eeeecCCCCCHHHHHHHHHHhC
Q psy10058 15 VLGSVGEPINPEAWQWYYHSIG 36 (59)
Q Consensus 15 ~~~~~g~~~~~~~~~~~~~~~~ 36 (59)
.++.|.+|.++++.+.+...+.
T Consensus 26 rv~FG~EP~d~Ei~~fi~~~~~ 47 (132)
T PF11208_consen 26 RVTFGAEPKDPEIYEFILKHWY 47 (132)
T ss_pred EEeeCCCCCcHHHHHHHHHHHH
Confidence 4678899999999999887764
No 131
>PTZ00297 pantothenate kinase; Provisional
Probab=38.64 E-value=31 Score=25.33 Aligned_cols=33 Identities=6% Similarity=-0.217 Sum_probs=21.3
Q ss_pred CccceeeecCC--CCCHHHHHHHHHHhCCCccceEeccccCccc
Q psy10058 11 NSLRVLGSVGE--PINPEAWQWYYHSIGGGKCSIVDTFWQTETG 52 (59)
Q Consensus 11 ~~lr~~~~~g~--~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~ 52 (59)
..+|.+++|++ +++..+ ..+ ..+..+||+||..
T Consensus 757 Grlr~~isGga~~~l~~~l------~~~---i~i~~g~glTE~~ 791 (1452)
T PTZ00297 757 GCVEKIVLCVSEESTSFSL------LEH---ISVCYVPCLREVF 791 (1452)
T ss_pred CCeEEEEECCCccccChHH------hCC---ceEEEecceEEee
Confidence 46888888874 444222 113 6678899999954
No 132
>KOG0136|consensus
Probab=36.73 E-value=32 Score=23.24 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHhCCCccceEeccccCcccc
Q psy10058 24 NPEAWQWYYHSIGGGKCSIVDTFWQTETGG 53 (59)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~ 53 (59)
+++..+|+..... ..|+-.|.|||.+.
T Consensus 128 ~EQ~~~Wl~~a~~---~~IiGtYAQTElGH 154 (670)
T KOG0136|consen 128 DEQQEKWLSRALN---MEIIGTYAQTELGH 154 (670)
T ss_pred HHHHHHHHHhccc---ceEEEeehhhhhcc
Confidence 4555555555543 67999999999974
No 133
>PF04915 DltD_N: DltD N-terminal region; InterPro: IPR006999 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the N-terminal region of DltD.; PDB: 3BMA_C.
Probab=31.33 E-value=52 Score=15.31 Aligned_cols=13 Identities=15% Similarity=0.061 Sum_probs=9.2
Q ss_pred cceEeccccCccc
Q psy10058 40 CSIVDTFWQTETG 52 (59)
Q Consensus 40 ~~i~~~yG~TE~~ 52 (59)
...+-.||.||-.
T Consensus 28 ~~yvPfyGSSEl~ 40 (62)
T PF04915_consen 28 PKYVPFYGSSELS 40 (62)
T ss_dssp S-EEEEE-SSTTT
T ss_pred CCeeeecCcHHHh
Confidence 5688999999975
No 134
>KOG2531|consensus
Probab=30.76 E-value=1.3e+02 Score=19.87 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=27.5
Q ss_pred CccceeeecCCCCCHHHHHHHHHHhCCCccceEec
Q psy10058 11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDT 45 (59)
Q Consensus 11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~ 45 (59)
+..|.+++||+.-+..+...+.+.|+ ++++..
T Consensus 442 ~~~rilvtGGAS~N~~Ilq~iadVf~---apVy~~ 473 (545)
T KOG2531|consen 442 PPTRILVTGGASRNEAILQIIADVFG---APVYTI 473 (545)
T ss_pred CCceEEEecCccccHHHHHHHHHHhC---CCeEee
Confidence 45788899999999999999999998 787765
No 135
>PF12162 STAT1_TAZ2bind: STAT1 TAZ2 binding domain; InterPro: IPR022752 This entry represents the C-terminal domain of STAT1, which selectively binds the TAZ2 domain of CRB (CREB-binding protein) []. This group of eukaryotic proteins is approximately 20 amino acids in length, and is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. By binding to CRB, it becomes a transcriptional activator and can initiate transcription of certain genes. ; GO: 0003700 sequence-specific DNA binding transcription factor activity; PDB: 2KA6_B.
Probab=30.53 E-value=41 Score=12.51 Aligned_cols=14 Identities=14% Similarity=0.387 Sum_probs=8.2
Q ss_pred CCCCHHHHHHHHHH
Q psy10058 21 EPINPEAWQWYYHS 34 (59)
Q Consensus 21 ~~~~~~~~~~~~~~ 34 (59)
-|++|+.+..+.+.
T Consensus 8 mPMSPddy~~l~~~ 21 (23)
T PF12162_consen 8 MPMSPDDYDELERM 21 (23)
T ss_dssp --S-HHHHHHHHHH
T ss_pred cCCCHHHHHHHHHh
Confidence 37888888877653
No 136
>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin. The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.
Probab=30.09 E-value=65 Score=20.89 Aligned_cols=40 Identities=13% Similarity=0.085 Sum_probs=20.2
Q ss_pred CCccceee-ecCCCCCHHHHHHHHHHhCCCccc-eEeccccCccc
Q psy10058 10 LNSLRVLG-SVGEPINPEAWQWYYHSIGGGKCS-IVDTFWQTETG 52 (59)
Q Consensus 10 ~~~lr~~~-~~g~~~~~~~~~~~~~~~~~~~~~-i~~~yG~TE~~ 52 (59)
.+.|+.+. .++..+ ..-.+++++.+|+ ++ +...|+.||..
T Consensus 266 WP~L~~v~~~~~g~~-~~y~~~l~~~~g~--~~~~~~~y~ASEg~ 307 (528)
T PF03321_consen 266 WPNLKLVSCWGGGSM-APYAPKLREYFGG--VPIQSKGYGASEGF 307 (528)
T ss_dssp STT--EEEEE-SGGG-GGGHHHHHHHHTT--S-EEE-EEEETTEE
T ss_pred CCCCcEEEEEcCCCh-HHHHHHHHHHcCC--CceeeccccccceE
Confidence 35566332 233333 3444567777774 34 45999999974
No 137
>PF13213 DUF4021: Protein of unknown function (DUF4021)
Probab=29.26 E-value=24 Score=15.37 Aligned_cols=9 Identities=22% Similarity=0.194 Sum_probs=6.8
Q ss_pred eccccCccc
Q psy10058 44 DTFWQTETG 52 (59)
Q Consensus 44 ~~yG~TE~~ 52 (59)
-.|||-|+.
T Consensus 28 GlYGMPET~ 36 (46)
T PF13213_consen 28 GLYGMPETD 36 (46)
T ss_pred cccCCCccc
Confidence 359999874
No 138
>PF01634 HisG: ATP phosphoribosyltransferase; InterPro: IPR013820 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. ATP phosphoribosyltransferase is found in two distinct forms: a long form containing two catalytic domains and a C-terminal regulatory domain, and a short form in which the regulatory domain is missing. The long form is catalytically competent, but in organisms with the short form, a histidyl-tRNA synthetase paralogue, HisZ, is required for enzyme activity []. This entry represents the catalytic region of this enzyme. The structures of the long form enzymes from Escherichia coli (P60757 from SWISSPROT) and Mycobacterium tuberculosis (P60759 from SWISSPROT) have been determined [, ]. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. The two catalytic domains are linked by a two-stranded beta-sheet and togther form a "periplasmic binding protein fold". A crevice between these domains contains the active site. The C-terminal domain is not directly involved in catalysis but appears to be involved the formation of hexamers, induced by the binding of inhibitors such as histidine to the enzyme, thus regulating activity.; GO: 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1VE4_A 2VD3_B 1NH7_A 1NH8_A 1Z7N_G 1Z7M_E 1O64_A 1O63_A 1USY_F 1Q1K_A ....
Probab=29.11 E-value=59 Score=17.89 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058 24 NPEAWQWYYHSIGGGKCSIVDTFWQTETGGH 54 (59)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~ 54 (59)
.|.+.+++.+..|. ++.++..+|.+|..+.
T Consensus 74 yp~l~~~yf~~~g~-~~~ii~l~GsvE~ap~ 103 (163)
T PF01634_consen 74 YPNLTRRYFAEKGI-NVEIIKLSGSVELAPP 103 (163)
T ss_dssp -HHHHHHHHHHCT--EEEEEE-SS-TTHHHH
T ss_pred CHHHHHHHHHHcCC-cEEEEEccCCccccCC
Confidence 57777777777652 2678999999998643
No 139
>PRK13584 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=28.19 E-value=85 Score=18.07 Aligned_cols=32 Identities=16% Similarity=0.079 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 23 INPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
-.|.+.+++.+..|- ++.++..+|.+|..+..
T Consensus 111 kyp~it~~yf~~~Gi-~~~ii~l~GsvElaP~~ 142 (204)
T PRK13584 111 SYVHTAETYFKSKGI-DVELIKLNGSVELACVV 142 (204)
T ss_pred CcHHHHHHHHHHcCC-eEEEEECCCceeecccc
Confidence 356777777776663 36689999999996543
No 140
>KOG1794|consensus
Probab=27.16 E-value=44 Score=20.63 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=25.1
Q ss_pred CCccceeeecCCC--CCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 10 LNSLRVLGSVGEP--INPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 10 ~~~lr~~~~~g~~--~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
+++|=..++|.+. ....+..++++.++ -..-+.|-+||+.+..
T Consensus 68 lr~lgL~lSg~d~e~~~~~lv~~~R~~fp---s~ae~~~v~sDa~~sl 112 (336)
T KOG1794|consen 68 LRSLGLGLSGTDQEDKNRKLVTEFRDKFP---SVAENFYVTSDADGSL 112 (336)
T ss_pred cceeeeecccCCchhHHHHHHHHHHHhcc---chhheeeeehhHHHHH
Confidence 3444444455542 23467777888886 3345678888875443
No 141
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=26.39 E-value=87 Score=14.95 Aligned_cols=15 Identities=13% Similarity=0.269 Sum_probs=12.9
Q ss_pred CCCHHHHHHHHHHhC
Q psy10058 22 PINPEAWQWYYHSIG 36 (59)
Q Consensus 22 ~~~~~~~~~~~~~~~ 36 (59)
|+|..+...++..+|
T Consensus 1 PLp~~~r~~~e~~~G 15 (79)
T PF13699_consen 1 PLPESIRSRLERAFG 15 (79)
T ss_pred CCCHHHHHHHHHHhC
Confidence 688888999998887
No 142
>PF11922 DUF3440: Domain of unknown function (DUF3440); InterPro: IPR021845 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 53 to 190 amino acids in length. This domain is found associated with PF01507 from PFAM. This domain has a conserved KND sequence motif.
Probab=26.11 E-value=82 Score=17.87 Aligned_cols=28 Identities=18% Similarity=0.385 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHhCCCccceEeccccCcc
Q psy10058 22 PINPEAWQWYYHSIGGGKCSIVDTFWQTET 51 (59)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~ 51 (59)
.+.|+++.++.....+ +.+...||.|-.
T Consensus 26 vlEPetW~k~v~RV~G--anfg~iY~~t~~ 53 (181)
T PF11922_consen 26 VLEPETWGKMVGRVNG--ANFGAIYGGTSA 53 (181)
T ss_pred hcCHHHHHHHHHHHcc--ccccccccCcch
Confidence 4689999999888753 778889987754
No 143
>PF04530 Viral_Beta_CD: Viral Beta C/D like family; InterPro: IPR007617 This is a family of ssRNA positive-strand viral proteins. Conserved region is found in the Beta C and Beta D transcripts.
Probab=24.70 E-value=1.2e+02 Score=16.07 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=17.5
Q ss_pred CCCccceeeecCCCCCHHHHHHHHHH
Q psy10058 9 DLNSLRVLGSVGEPINPEAWQWYYHS 34 (59)
Q Consensus 9 ~~~~lr~~~~~g~~~~~~~~~~~~~~ 34 (59)
||.++.. -.|..|++|++++++...
T Consensus 87 DLNsVei-k~~~~PIDP~VIaAIHHw 111 (122)
T PF04530_consen 87 DLNSVEI-KLAPVPIDPEVIAAIHHW 111 (122)
T ss_pred eccceEE-ecCCCCCCHHHHHHHHHH
Confidence 5555553 234489999999998754
No 144
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=24.63 E-value=28 Score=17.30 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=9.0
Q ss_pred CccceeeecCCCCCHHHH
Q psy10058 11 NSLRVLGSVGEPINPEAW 28 (59)
Q Consensus 11 ~~lr~~~~~g~~~~~~~~ 28 (59)
...|.++.+|+|+.+++.
T Consensus 61 ~~a~~lll~GePl~Epi~ 78 (104)
T PF05726_consen 61 EGARFLLLGGEPLNEPIV 78 (104)
T ss_dssp SSEEEEEEEE----S--E
T ss_pred CCcEEEEEEccCCCCCEE
Confidence 457889999999876543
No 145
>PRK01686 hisG ATP phosphoribosyltransferase catalytic subunit; Reviewed
Probab=24.58 E-value=1.1e+02 Score=17.69 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058 24 NPEAWQWYYHSIGGGKCSIVDTFWQTETGGH 54 (59)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~ 54 (59)
.|.+.+++.+..|- ++.++..+|.+|..+.
T Consensus 122 Yp~it~~yf~~~gv-~~~iv~l~GsvE~aP~ 151 (215)
T PRK01686 122 YPNIARRYFAEKGE-QVEIIKLYGSVELAPL 151 (215)
T ss_pred CHHHHHHHHHHcCC-eEEEEECcCceeeccc
Confidence 46677777666663 2668899999999654
No 146
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=21.59 E-value=1.3e+02 Score=17.76 Aligned_cols=29 Identities=7% Similarity=0.070 Sum_probs=19.7
Q ss_pred cceeeecCCCCCHHHHHHHHHHhCCCccceEec
Q psy10058 13 LRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDT 45 (59)
Q Consensus 13 lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~ 45 (59)
-..+..|.+.|+ .+.+++++.+| ++++.+
T Consensus 175 AeaIiLGCAGms-~la~~Lq~~~g---vPVIDg 203 (230)
T COG4126 175 AEAIILGCAGMS-DLADQLQKAFG---VPVIDG 203 (230)
T ss_pred CCEEEEcCccHH-HHHHHHHHHhC---CCcccc
Confidence 345677777774 55778888887 776643
No 147
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=21.01 E-value=65 Score=17.15 Aligned_cols=10 Identities=30% Similarity=0.444 Sum_probs=8.4
Q ss_pred eeeecCCCCC
Q psy10058 15 VLGSVGEPIN 24 (59)
Q Consensus 15 ~~~~~g~~~~ 24 (59)
..++||+|+-
T Consensus 67 Vt~sGGEPll 76 (154)
T TIGR02491 67 LTLSGGDPLY 76 (154)
T ss_pred EEEeChhhCC
Confidence 6779999996
No 148
>COG0040 HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=20.61 E-value=1.3e+02 Score=18.36 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058 24 NPEAWQWYYHSIGGGKCSIVDTFWQTETGGH 54 (59)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~ 54 (59)
.+.+.+++.+..|. .+.++..+|.+|..+.
T Consensus 123 Yp~l~~~yf~~~g~-~~~Ii~l~GsvE~aP~ 152 (290)
T COG0040 123 YPNLARKYFAEKGI-DVEIIKLSGSVELAPA 152 (290)
T ss_pred cHHHHHHHHHHcCc-eEEEEEccCcEeeccc
Confidence 35555666555452 2678999999998754
No 149
>TIGR00070 hisG ATP phosphoribosyltransferase. Members of this family from B. subtilis, Aquifex aeolicus, and Synechocystis PCC6803 (and related taxa) lack the C-terminal third of the sequence. The sole homolog from Archaeoglobus fulgidus lacks the N-terminal 50 residues (as reported) and is otherwise atypical of the rest of the family. This model excludes the C-terminal extension.
Probab=20.20 E-value=1.6e+02 Score=16.59 Aligned_cols=30 Identities=17% Similarity=0.169 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058 24 NPEAWQWYYHSIGGGKCSIVDTFWQTETGGH 54 (59)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~ 54 (59)
.|.+.+++.+..|- ++.++..+|..|..+.
T Consensus 116 yp~i~~~~f~~~Gi-~v~ii~l~GsvE~aP~ 145 (182)
T TIGR00070 116 YPNLARRYFEKKGI-DVEIIKLNGSVELAPL 145 (182)
T ss_pred CHHHHHHHHHHcCC-eEEEEECcceeecccC
Confidence 46666777676663 3668999999998653
No 150
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=20.17 E-value=1.1e+02 Score=17.42 Aligned_cols=12 Identities=33% Similarity=0.321 Sum_probs=9.1
Q ss_pred ceeeecCCCCCH
Q psy10058 14 RVLGSVGEPINP 25 (59)
Q Consensus 14 r~~~~~g~~~~~ 25 (59)
-.+++||+|+-.
T Consensus 74 ~V~lTGGEP~~~ 85 (212)
T COG0602 74 GVSLTGGEPLLQ 85 (212)
T ss_pred eEEEeCCcCCCc
Confidence 367899999654
No 151
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=20.08 E-value=1.1e+02 Score=15.18 Aligned_cols=35 Identities=14% Similarity=0.207 Sum_probs=19.8
Q ss_pred eeecCCCCCHHHHHHHHHHhCCCccceEeccccCcc
Q psy10058 16 LGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTET 51 (59)
Q Consensus 16 ~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~ 51 (59)
+-..-+|.+.+....+.+.++.. -.++-.|-.|.+
T Consensus 51 in~sFaPspDe~vg~L~~~f~~~-~~Liv~Ys~t~A 85 (87)
T PF04110_consen 51 INNSFAPSPDETVGDLYRCFGTN-GELIVSYSKTPA 85 (87)
T ss_dssp EEEEE---TTSBHHHHHHHH-BT-TBEEEEEESSS-
T ss_pred EcCccCCCchhHHHHHHHHhCCC-CEEEEEEecccc
Confidence 33455788888888888888521 345667766654
No 152
>PF05414 DUF1717: Viral domain of unknown function (DUF1717); InterPro: IPR008745 The domain is found towards the N terminus of the polyprotein of Apple stem grooving virus (strain P-209) (ASGV), Citrus tatter leaf virus and from Apple stem grooving virus (strain Korea) (ASGV) (Pear black necrotic leaf spot virus). Its function is unknown [, ].
Probab=20.07 E-value=1.4e+02 Score=14.95 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=20.3
Q ss_pred CCCCCHHHHHHHHHHhCCCccceEeccccC
Q psy10058 20 GEPINPEAWQWYYHSIGGGKCSIVDTFWQT 49 (59)
Q Consensus 20 g~~~~~~~~~~~~~~~~~~~~~i~~~yG~T 49 (59)
-.|++..+.+-....+| ..+...||.+
T Consensus 24 D~piSskllE~cc~flg---yrVhiyyGdS 50 (101)
T PF05414_consen 24 DNPISSKLLEICCKFLG---YRVHIYYGDS 50 (101)
T ss_pred cCCccHHHHHHHHhhcc---cEEEEEecce
Confidence 35778888887777777 6777888876
No 153
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=20.03 E-value=1.3e+02 Score=18.82 Aligned_cols=24 Identities=17% Similarity=0.032 Sum_probs=19.2
Q ss_pred cceeeecCCCCCHHHHHHHHHHhC
Q psy10058 13 LRVLGSVGEPINPEAWQWYYHSIG 36 (59)
Q Consensus 13 lr~~~~~g~~~~~~~~~~~~~~~~ 36 (59)
-+.+++||..-++.+.+++++.++
T Consensus 286 ~~v~v~GGGa~N~~L~~~L~~~l~ 309 (364)
T PF03702_consen 286 DEVYVCGGGARNPFLMERLQERLP 309 (364)
T ss_dssp EEEEEESGGGG-HHHHHHHHHH-T
T ss_pred ceEEEECCCcCCHHHHHHHHhhCC
Confidence 357888999999999999999986
Done!