Query psy10058
Match_columns 59
No_of_seqs 120 out of 1462
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 16:49:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10058.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10058hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ry2_A Acetyl-coenzyme A synth 98.9 3.5E-09 1.2E-13 65.5 6.3 51 6-56 379-429 (663)
2 1pg4_A Acetyl-COA synthetase; 98.9 3.2E-09 1.1E-13 65.5 6.0 51 6-56 373-423 (652)
3 3etc_A AMP-binding protein; ad 98.9 2.6E-09 8.8E-14 65.2 5.4 48 6-56 336-383 (580)
4 3t5a_A Long-chain-fatty-acid-- 98.8 8.7E-09 3E-13 60.9 5.3 52 6-57 306-360 (480)
5 3qov_A Phenylacetate-coenzyme 98.8 8.5E-09 2.9E-13 60.7 4.8 43 9-54 204-246 (436)
6 3ni2_A 4-coumarate:COA ligase; 98.8 8.7E-09 3E-13 62.1 4.9 48 6-55 292-339 (536)
7 3c5e_A Acyl-coenzyme A synthet 98.8 1.3E-08 4.3E-13 62.0 5.3 47 7-56 318-364 (570)
8 3rix_A Luciferase, luciferin 4 98.8 1.2E-08 4.1E-13 61.7 5.1 49 6-56 302-350 (550)
9 3fce_A D-alanine--poly(phospho 98.8 1.6E-08 5.3E-13 60.6 5.4 49 6-56 256-304 (512)
10 1v25_A Long-chain-fatty-acid-C 98.7 2.2E-08 7.6E-13 60.4 5.5 46 7-56 289-334 (541)
11 2d1s_A Luciferase, luciferin 4 98.7 1.8E-08 6.1E-13 61.0 5.1 48 7-56 305-352 (548)
12 4fuq_A Malonyl COA synthetase; 98.7 2.7E-08 9.1E-13 59.7 5.4 47 6-55 263-309 (503)
13 3e7w_A D-alanine--poly(phospho 98.7 3.3E-08 1.1E-12 59.2 5.4 49 6-56 255-303 (511)
14 3hgu_A EHPF; phenazine, antibi 98.7 7.1E-09 2.4E-13 59.9 2.2 45 9-55 229-274 (369)
15 3kxw_A Saframycin MX1 syntheta 98.7 4E-08 1.4E-12 59.5 5.5 51 6-56 284-337 (590)
16 4gs5_A Acyl-COA synthetase (AM 98.7 1.5E-08 5.3E-13 58.8 3.6 47 6-56 143-189 (358)
17 3gqw_A Fatty acid AMP ligase; 98.7 4.3E-08 1.5E-12 59.0 5.5 51 6-56 294-347 (576)
18 2y4o_A Phenylacetate-coenzyme 98.7 2.6E-08 8.9E-13 58.7 4.5 41 10-53 211-251 (443)
19 2y27_A Phenylacetate-coenzyme 98.7 2.7E-08 9.1E-13 58.6 4.5 41 10-53 209-249 (437)
20 3l8c_A D-alanine--poly(phospho 98.7 4.6E-08 1.6E-12 58.6 5.4 48 7-56 260-307 (521)
21 1mdb_A 2,3-dihydroxybenzoate-A 98.7 3.7E-08 1.3E-12 59.4 4.8 45 7-54 294-338 (539)
22 3ite_A SIDN siderophore synthe 98.6 1.4E-08 4.7E-13 61.4 2.8 46 7-55 290-335 (562)
23 1t5h_X 4-chlorobenzoyl COA lig 98.6 4.9E-08 1.7E-12 58.4 5.1 43 7-52 268-310 (504)
24 3tsy_A Fusion protein 4-coumar 98.6 5.7E-08 1.9E-12 62.0 4.4 49 6-56 339-387 (979)
25 3g7s_A Long-chain-fatty-acid-- 98.6 1.5E-07 5E-12 56.9 5.8 49 8-56 293-345 (549)
26 3r44_A Fatty acyl COA syntheta 98.6 8.7E-08 3E-12 57.6 4.7 45 7-55 280-324 (517)
27 3o83_A Peptide arylation enzym 98.6 5.1E-08 1.7E-12 58.9 3.7 45 8-55 304-348 (544)
28 2v7b_A Benzoate-coenzyme A lig 98.5 1.5E-07 5.2E-12 56.5 5.2 42 11-55 300-341 (529)
29 3rg2_A Enterobactin synthase c 98.5 1.7E-07 5.9E-12 57.4 5.2 45 8-55 299-343 (617)
30 4dg8_A PA1221; ANL superfamily 98.5 1.3E-07 4.5E-12 58.2 4.1 46 8-55 273-318 (620)
31 4gr5_A Non-ribosomal peptide s 98.5 1.5E-07 5.2E-12 57.1 4.3 46 8-55 323-368 (570)
32 3nyq_A Malonyl-COA ligase; A/B 98.5 1.1E-07 3.6E-12 57.2 3.4 45 9-56 270-314 (505)
33 3ipl_A 2-succinylbenzoate--COA 98.3 6.8E-07 2.3E-11 53.3 4.4 40 12-55 275-314 (501)
34 1amu_A GRSA, gramicidin synthe 98.3 3.5E-07 1.2E-11 55.7 2.9 44 7-55 289-332 (563)
35 2vsq_A Surfactin synthetase su 98.2 1.2E-06 4E-11 57.6 3.8 44 10-55 719-762 (1304)
36 3ivr_A Putative long-chain-fat 97.9 7.7E-06 2.6E-10 48.9 2.8 45 7-56 268-312 (509)
37 2v7s_A Probable conserved lipo 26.6 39 0.0013 18.9 1.8 36 13-53 117-152 (215)
38 2vd2_A ATP phosphoribosyltrans 23.5 73 0.0025 17.6 2.5 30 24-54 119-148 (214)
39 1z7m_E ATP phosphoribosyltrans 23.0 72 0.0025 17.5 2.4 30 24-54 117-146 (208)
40 1xg8_A Hypothetical protein SA 20.8 63 0.0021 16.1 1.7 15 21-35 25-39 (111)
41 4eql_A 4-substituted benzoates 20.5 92 0.0032 19.8 2.8 35 13-52 302-337 (581)
42 1o63_A ATP phosphoribosyltrans 20.4 88 0.003 17.4 2.5 30 24-54 110-139 (219)
43 3sb1_A Hydrogenase expression 20.0 1.1E+02 0.0038 16.1 2.9 31 21-51 74-105 (160)
No 1
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=98.91 E-value=3.5e-09 Score=65.52 Aligned_cols=51 Identities=57% Similarity=1.137 Sum_probs=43.2
Q ss_pred CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
..+++++||.+.++|+|+++++++++.+.++..++.+++.||+||++.+++
T Consensus 379 ~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~ 429 (663)
T 1ry2_A 379 ENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLV 429 (663)
T ss_dssp SSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSE
T ss_pred ccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeee
Confidence 456889999999999999999999999988622367999999999986544
No 2
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=98.91 E-value=3.2e-09 Score=65.47 Aligned_cols=51 Identities=65% Similarity=1.305 Sum_probs=43.3
Q ss_pred CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
..+++++||.+.++|+++++++++++.+.++..++.+++.||+||++.+++
T Consensus 373 ~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~ 423 (652)
T 1pg4_A 373 EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMI 423 (652)
T ss_dssp TTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSB
T ss_pred ccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCccccccee
Confidence 456889999999999999999999999988622367999999999986554
No 3
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=98.90 E-value=2.6e-09 Score=65.18 Aligned_cols=48 Identities=27% Similarity=0.465 Sum_probs=41.0
Q ss_pred CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
...++++||.+++||+++++++.+++.+.++ +.+++.||+||++.+++
T Consensus 336 ~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g---~~i~~~YG~TE~~~~~~ 383 (580)
T 3etc_A 336 SHYNFSTLKYAVVAGEPLNPEVFNRFLEFTG---IKLMEGFGQTETVVTIA 383 (580)
T ss_dssp ---CCTTCCEEEECSSCCCHHHHHHHHHHHS---CCCEEEECCTTSSCCEE
T ss_pred ccCCCccceEEEEccCCCCHHHHHHHHHHhC---CeEecccccccccceee
Confidence 4567889999999999999999999999988 88999999999976544
No 4
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=98.80 E-value=8.7e-09 Score=60.92 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=42.8
Q ss_pred CCCCCCccceeeecCCCCCHHHHHHHHHHhCC---CccceEeccccCcccceecc
Q psy10058 6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGG---GKCSIVDTFWQTETGGHVLT 57 (59)
Q Consensus 6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~---~~~~i~~~yG~TE~~~~~~~ 57 (59)
...++++||.+++||+++++++.+++.+.++. ..+.+.+.||+||++.+++.
T Consensus 306 ~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 360 (480)
T 3t5a_A 306 AGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVAT 360 (480)
T ss_dssp TTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEE
T ss_pred cccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEee
Confidence 45778999999999999999999999998741 01468999999999876543
No 5
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=98.79 E-value=8.5e-09 Score=60.70 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=39.0
Q ss_pred CCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058 9 DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH 54 (59)
Q Consensus 9 ~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~ 54 (59)
++++||.+++||+++++++.+++.+.++ +.+++.||+||+++.
T Consensus 204 ~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~v~~~YG~TE~~~~ 246 (436)
T 3qov_A 204 RETTLKTLVIGAEPHTDEQRRKIERMLN---VKAYNSFGMTEMNGP 246 (436)
T ss_dssp TSSSCCEEEEESSCCCHHHHHHHHHHHT---SEEEEEEEEGGGTEE
T ss_pred ccCCccEEEEeCCcCCHHHHHHHHHHhC---ccEEecCcchhhcCC
Confidence 3678999999999999999999999998 899999999999544
No 6
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=98.78 E-value=8.7e-09 Score=62.10 Aligned_cols=48 Identities=29% Similarity=0.356 Sum_probs=42.1
Q ss_pred CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
...++++||.+++||+++++++.+++.+.+++ +.+++.||+||++.++
T Consensus 292 ~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~--~~l~~~YG~TE~~~~~ 339 (536)
T 3ni2_A 292 DKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQ--ARLGQGYGMTEAGPVL 339 (536)
T ss_dssp GGSCCTTCCEEEEESSCCCHHHHHHHHHHCTT--SEEEEEEECGGGSSEE
T ss_pred ccCCCccceEEEECCCCCCHHHHHHHHHHCCC--CCccccccccccchhh
Confidence 35678899999999999999999999999843 8899999999998654
No 7
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=98.77 E-value=1.3e-08 Score=62.01 Aligned_cols=47 Identities=28% Similarity=0.372 Sum_probs=41.6
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
..++++||.+++||+++++++.+++.+.++ +.+++.||+||++.+++
T Consensus 318 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~i~~~YG~TE~~~~~~ 364 (570)
T 3c5e_A 318 SYKFPHLQNCVTVGESLLPETLENWRAQTG---LDIRESYGQTETGLTCM 364 (570)
T ss_dssp TCCCTTCCEEEEESSCCCHHHHHHHHHHHS---CCCEEEEEETTTEEEEE
T ss_pred ccccccceEEEEcCCcCCHHHHHHHHHHhC---Cchhhccchhhccccee
Confidence 456789999999999999999999999887 88999999999986543
No 8
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=98.77 E-value=1.2e-08 Score=61.66 Aligned_cols=49 Identities=27% Similarity=0.257 Sum_probs=41.8
Q ss_pred CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
...++++||.+++||+++++++.+++.+.++. ..+.+.||+||++..++
T Consensus 302 ~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--~~v~~~YG~TE~~~~~~ 350 (550)
T 3rix_A 302 DKYDLSNLHEIASGGAPLSKEVGEAVAKRFHL--PGIRQGYGLTETTSAIL 350 (550)
T ss_dssp GGSCCTTCCEEEECSSCCCHHHHHHHHHHTTC--SCCEEEEECGGGSSEEE
T ss_pred cccCcccccEEEEecCCCCHHHHHHHHHHcCC--CccccccCcCcccccee
Confidence 35678899999999999999999999999872 34889999999986554
No 9
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=98.76 E-value=1.6e-08 Score=60.58 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=42.4
Q ss_pred CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
...++++||.++++|+++++++.+++.+.+++ +.+++.||+||++.+++
T Consensus 256 ~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~--~~i~~~YG~TE~~~~~~ 304 (512)
T 3fce_A 256 SESMLPNMKTFLFCGEVLPNEVARKLIERFPK--ATIMNTYGPTEATVAVT 304 (512)
T ss_dssp STTTSTTCCEEEECSSCCCHHHHHHHHHHCTT--CEEEEEECCGGGSSCSE
T ss_pred cchhCccccEEEEecCcCCHHHHHHHHHHCCC--CEEEeCcccChhhhhee
Confidence 34678899999999999999999999999853 88999999999986543
No 10
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=98.73 E-value=2.2e-08 Score=60.44 Aligned_cols=46 Identities=24% Similarity=0.288 Sum_probs=40.1
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
..++++||.+++||+++++++.+++ +.++ +.+++.||+||++.+++
T Consensus 289 ~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g---~~~~~~YG~TE~~~~~~ 334 (541)
T 1v25_A 289 GHRLKTLRRLVVGGSAAPRSLIARF-ERMG---VEVRQGYGLTETSPVVV 334 (541)
T ss_dssp TCCCSSCCEEEECSSCCCHHHHHHH-HHTT---CEEEEEEECGGGSSEEE
T ss_pred CCcchhccEEEECCCCCCHHHHHHH-HHhC---Cceeeccccccccccee
Confidence 3577899999999999999999999 6677 88999999999986554
No 11
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=98.73 E-value=1.8e-08 Score=60.98 Aligned_cols=48 Identities=23% Similarity=0.236 Sum_probs=41.8
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
..++++||.+++||+++++++.+++.+.++. +.+++.||+||++.+++
T Consensus 305 ~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--~~i~~~YG~TE~~~~~~ 352 (548)
T 2d1s_A 305 KYDLSNLVEIASGGAPLSKEVGEAVARRFNL--PGVRQGYGLTETTSAII 352 (548)
T ss_dssp GSCCTTCCEEEECSSCCCHHHHHHHHHHTTC--SCCEEEEECGGGSSEEE
T ss_pred cccccceeEEEEcCccCCHHHHHHHHHHcCC--Cceeeccccccccceee
Confidence 4578899999999999999999999999853 77999999999986554
No 12
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=98.71 E-value=2.7e-08 Score=59.67 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=41.4
Q ss_pred CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
...++++||.+++||+++++++.+++.+.++ ..+++.||+||++..+
T Consensus 263 ~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~ 309 (503)
T 4fuq_A 263 TKETTGHMRLFISGSAPLLADTHREWSAKTG---HAVLERYGMTETNMNT 309 (503)
T ss_dssp STTTTTTCCEEEECSSCCCHHHHHHHHHHHS---CCEEECCEETTTEECB
T ss_pred cccchhhcEEEEECCCCCCHHHHHHHHHHhC---CCccceEcccccCccc
Confidence 3456788999999999999999999999988 7899999999997554
No 13
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=98.69 E-value=3.3e-08 Score=59.23 Aligned_cols=49 Identities=16% Similarity=0.075 Sum_probs=42.1
Q ss_pred CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
...+++++|.+.++|+++++++.+++.+.+++ +.+++.||+||++..++
T Consensus 255 ~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~--~~i~~~YG~TE~~~~~~ 303 (511)
T 3e7w_A 255 SQDLLPHADTFMFCGEVLPVSVAKALLERFPK--AKIFNTYGPTEATVAVT 303 (511)
T ss_dssp STTTCTTCCEEEECSSCCCHHHHHHHHHHCTT--CEEEECCCCGGGSSCSE
T ss_pred ccccCCcccEEEEecCCCCHHHHHHHHHHCCC--cEEEeCcccchheeeee
Confidence 34567899999999999999999999999853 88999999999976543
No 14
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=98.68 E-value=7.1e-09 Score=59.93 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=39.2
Q ss_pred CCCccceeeecCCCCCHHHHHHHH-HHhCCCccceEeccccCccccee
Q psy10058 9 DLNSLRVLGSVGEPINPEAWQWYY-HSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 9 ~~~~lr~~~~~g~~~~~~~~~~~~-~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
++++||.+++||+++++++.+++. +.+++ +.+++.||+||+++++
T Consensus 229 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~--~~v~~~YG~TE~~~~~ 274 (369)
T 3hgu_A 229 MKQSLAQITLGGTELNLDEIKFIASEILPD--CEFSASYGSTSALGVS 274 (369)
T ss_dssp HHHHCSEEEEESSCCCHHHHHHHHHHTCTT--SEEEEEEEEGGGTEEE
T ss_pred ccCCeeEEEECCccCCHHHHHHHHHHhCCC--cEEEcccCchhhhcce
Confidence 457899999999999999999999 88832 8899999999987654
No 15
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=98.68 E-value=4e-08 Score=59.48 Aligned_cols=51 Identities=20% Similarity=0.198 Sum_probs=42.1
Q ss_pred CCCCCCccceeeecCCCCCHHHHHHHHHHhCC---CccceEeccccCcccceec
Q psy10058 6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGG---GKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~---~~~~i~~~yG~TE~~~~~~ 56 (59)
...++++||.+++||+++++++.+++.+.++. .+..+++.||+||++.+++
T Consensus 284 ~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~ 337 (590)
T 3kxw_A 284 EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVT 337 (590)
T ss_dssp TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEE
T ss_pred cCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceee
Confidence 35678999999999999999999999998741 0146899999999987655
No 16
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=98.68 E-value=1.5e-08 Score=58.80 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=39.8
Q ss_pred CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
...++++||.+++||+++++++.+++.+ ++ +.+++.||+||++..++
T Consensus 143 ~~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~---~~~~~~YG~TEt~~~~~ 189 (358)
T 4gs5_A 143 TSGQVDRLGKVLLGGAPVNHALAMQISD-LA---MPVYQSYGMTETVSHVA 189 (358)
T ss_dssp TGGGGGGGCSEEECSSCCCHHHHHHHHT-CS---SCEEEEEECGGGSSEEE
T ss_pred ccccCCcceEEEEcccCCCchheecccc-cC---ceEEeccccccccceee
Confidence 3456889999999999999999998865 46 78999999999986554
No 17
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=98.67 E-value=4.3e-08 Score=59.03 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=41.9
Q ss_pred CCCCCCccceeeecCCCCCHHHHHHHHHHhCC---CccceEeccccCcccceec
Q psy10058 6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGG---GKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~---~~~~i~~~yG~TE~~~~~~ 56 (59)
...++++||.+.+||+++++++.+++.+.++. .+..+++.||+||++.+++
T Consensus 294 ~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 347 (576)
T 3gqw_A 294 AELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVS 347 (576)
T ss_dssp TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEE
T ss_pred ccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceee
Confidence 34678899999999999999999999988730 0167999999999986654
No 18
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=98.67 E-value=2.6e-08 Score=58.74 Aligned_cols=41 Identities=20% Similarity=0.136 Sum_probs=37.3
Q ss_pred CCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccc
Q psy10058 10 LNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGG 53 (59)
Q Consensus 10 ~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~ 53 (59)
+++||.+++||+++++++.+++++.++ +.+++.||+||+++
T Consensus 211 ~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~v~~~YG~TE~~g 251 (443)
T 2y4o_A 211 ESSLKIGIFGAEPWTQALRNEVETRVG---IDALDIYGLSEVMG 251 (443)
T ss_dssp GSSCCEEEEESSCCCHHHHHHHHHHHT---CEEEEEEEETTTTE
T ss_pred cCCceEEEECCCcCCHHHHHHHHHHhC---cCEEeccCchhhcC
Confidence 478999999999999999999999887 88999999999743
No 19
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=98.67 E-value=2.7e-08 Score=58.61 Aligned_cols=41 Identities=24% Similarity=0.194 Sum_probs=37.3
Q ss_pred CCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccc
Q psy10058 10 LNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGG 53 (59)
Q Consensus 10 ~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~ 53 (59)
+++||.+++||+++++++.+++++.++ +.+++.||+||+++
T Consensus 209 ~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~v~~~YG~TE~~g 249 (437)
T 2y27_A 209 QSSLRIGIFGAEPWTNDMRVAIEQRMG---IDAVDIYGLSEVMG 249 (437)
T ss_dssp GSSCCEEEEESSCCCHHHHHHHHHHHT---SEEEEEEEETTTTE
T ss_pred cCCeeEEEEcCccCCHHHHHHHHHHHC---cCEEecCCchhhcC
Confidence 478999999999999999999999888 88999999999843
No 20
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=98.66 E-value=4.6e-08 Score=58.60 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=41.6
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
..++++||.+.++|+++++++.+++.+.+++ +.+++.||+||++.+++
T Consensus 260 ~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~--~~i~~~YG~TE~~~~~~ 307 (521)
T 3l8c_A 260 QAKMPALTHFYFDGEELTVSTARKLFERFPS--AKIINAYGPTEATVALS 307 (521)
T ss_dssp TTTCTTCCEEEECSSCCCHHHHHHHHHHCTT--CEEEEEECCGGGSSCSE
T ss_pred cccCccceEEEEecccCCHHHHHHHHHHCCC--ceEEeCcCccHHhhhhc
Confidence 4567899999999999999999999999842 88999999999976543
No 21
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=98.65 E-value=3.7e-08 Score=59.44 Aligned_cols=45 Identities=29% Similarity=0.367 Sum_probs=40.2
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH 54 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~ 54 (59)
..++++||.+++||+++++++.+++.+.++ +.+++.||+||++..
T Consensus 294 ~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~ 338 (539)
T 1mdb_A 294 RDDLSSLQVLQVGGAKFSAEAARRVKAVFG---CTLQQVFGMAEGLVN 338 (539)
T ss_dssp CCCCTTCCEEEEESSCCCHHHHTTHHHHTC---SEEEEEEECTTSCEE
T ss_pred CCCccceeEEEEcCCCCCHHHHHHHHHHhC---CcEEEEEcCCCCccc
Confidence 457889999999999999999999999888 889999999997543
No 22
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=98.64 E-value=1.4e-08 Score=61.40 Aligned_cols=46 Identities=26% Similarity=0.275 Sum_probs=40.0
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..++++||.+.+||+++++++.+++.+.++ +.+++.||+||++..+
T Consensus 290 ~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~ 335 (562)
T 3ite_A 290 PEDAPHLVYLGVGGEKMTPRTQQIWSSSDR---VALVNVYGPTEVTIGC 335 (562)
T ss_dssp GGGSTTCCEEEEESSCCCHHHHHHHTTCSS---CEEEEEECCGGGCSCS
T ss_pred ccccCceEEEEEecCCCCHHHHHHHhhCCC---cEEEEeeccchheeee
Confidence 356789999999999999999999988766 8899999999997544
No 23
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=98.64 E-value=4.9e-08 Score=58.42 Aligned_cols=43 Identities=19% Similarity=0.167 Sum_probs=39.1
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccc
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETG 52 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~ 52 (59)
..++++||.+++||+++++++.+++.+.++ ..+++.||+||++
T Consensus 268 ~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~ 310 (504)
T 1t5h_X 268 SLKLDSLRHVTFAGATMPDAVLETVHQHLP---GEKVNIYGTTEAM 310 (504)
T ss_dssp CCCCTTCCEEEECCTTCCHHHHHHHHHHCC---SEEEEEEEETTTE
T ss_pred cccCccccEEEEcCCcCCHHHHHHHHHhcC---cceeeeecccccc
Confidence 456889999999999999999999999987 7899999999993
No 24
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=98.58 E-value=5.7e-08 Score=62.03 Aligned_cols=49 Identities=24% Similarity=0.260 Sum_probs=42.4
Q ss_pred CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
...++++||.+++||+++++++.+++.+.+++ +.+++.||+||++.+++
T Consensus 339 ~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~--~~l~~~YG~TE~~~~~~ 387 (979)
T 3tsy_A 339 EKYDLSSIRVVKSGAAPLGKELEDAVNAKFPN--AKLGQGYGMTEAGPVLA 387 (979)
T ss_dssp GTSCCTTCCEEEESSCCCCSSHHHHHHHHCTT--CEEEECEECGGGCSEEE
T ss_pred cCCCccceEEEEEcCCCCCHHHHHHHHHHCCC--CeEEeeechhhhhHHHH
Confidence 34578899999999999999999999999853 88999999999986543
No 25
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=98.57 E-value=1.5e-07 Score=56.91 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=40.8
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHH----hCCCccceEeccccCcccceec
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHS----IGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~----~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
.++++||.+.+||+++++++.+++.+. ++..++.+++.||+||++.+++
T Consensus 293 ~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 345 (549)
T 3g7s_A 293 YDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVT 345 (549)
T ss_dssp CCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEE
T ss_pred CCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhh
Confidence 578899999999999999999999887 5421257889999999987654
No 26
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=98.57 E-value=8.7e-08 Score=57.61 Aligned_cols=45 Identities=20% Similarity=0.252 Sum_probs=39.2
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..++++||.+++||+++++++.+++.+. + +.+++.||+||++..+
T Consensus 280 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~---~~~~~~YG~TE~~~~~ 324 (517)
T 3r44_A 280 ELDAPDFRYFITGGAPMPEALIKIYAAK-N---IEVVQGYALTESCGGG 324 (517)
T ss_dssp HCCCTTCCEEEECSSCCCHHHHHHHHHT-T---CEEEEEEECGGGTTCE
T ss_pred cCCCCcccEEEECCCCCCHHHHHHHHhc-C---CcEEEeecccccccce
Confidence 3567899999999999999999999776 6 8899999999997644
No 27
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=98.56 E-value=5.1e-08 Score=58.92 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=40.0
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
.++++||.+++||+++++++.+++.+.++ +.+++.||+||++..+
T Consensus 304 ~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~ 348 (544)
T 3o83_A 304 DQIQSLKLLQVGGASFPESLARQVPEVLN---CKLQQVFGMAEGLVNY 348 (544)
T ss_dssp HHHTTCCEEEEESSCCCHHHHTHHHHHHC---SEEEEEEECTTSCEEE
T ss_pred ccCCcceEEEEcCCCCCHHHHHHHHHHhC---CcEEeeecccccccee
Confidence 35678999999999999999999999998 8999999999987543
No 28
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=98.53 E-value=1.5e-07 Score=56.50 Aligned_cols=42 Identities=26% Similarity=0.361 Sum_probs=37.9
Q ss_pred CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
.+||.+++||+++++++.+++.+.++ +.+++.||+||++.++
T Consensus 300 ~~lr~~~~gGe~l~~~~~~~~~~~~g---~~i~~~YG~TE~~~~~ 341 (529)
T 2v7b_A 300 VAIRICTSAGEALPREIGERFTAHFG---CEILDGIGSTEMLHIF 341 (529)
T ss_dssp CCCCEEEECSSCCCHHHHHHHHHHHS---CCEEEEEECTTTSSEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhC---CceeeeEchhhcCcee
Confidence 37999999999999999999999888 8899999999996554
No 29
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=98.52 E-value=1.7e-07 Score=57.37 Aligned_cols=45 Identities=22% Similarity=0.252 Sum_probs=40.4
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
.++++||.+++||+++++++.+++.+.++ +.+++.||+||++..+
T Consensus 299 ~~l~~lr~i~~gGe~l~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~ 343 (617)
T 3rg2_A 299 AQLASLKLLQVGGARLSATLAARIPAEIG---CQLQQVFGMAEGLVNY 343 (617)
T ss_dssp TTTTTCCEEEEESSCCCHHHHHHHHHHTC---SEEEEEEEETTEEEEE
T ss_pred ccCCCccEEEEcCCcCCHHHHHHHHHHhC---CcEEEEeccCcceeec
Confidence 46889999999999999999999999987 8999999999987544
No 30
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=98.49 E-value=1.3e-07 Score=58.25 Aligned_cols=46 Identities=17% Similarity=0.099 Sum_probs=39.0
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
.++++||.+++||++++++..+++.+.+++ +.+++.||+||++.++
T Consensus 273 ~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~--~~l~n~YG~TE~~~~~ 318 (620)
T 4dg8_A 273 DCLGGLRQLLTGGDILSVPHVRRALLRHPR--LHLVNGYGPTENTTFT 318 (620)
T ss_dssp GGGTTCSEEEEESSCCCHHHHHHHHHHCTT--CEEEEEECCGGGCSCS
T ss_pred hhCCCccEEEEEeCcCCHHHHHHHHHhCCC--eEEEeeEchhhhhhhe
Confidence 457889999999999999888888877642 7899999999997654
No 31
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=98.48 E-value=1.5e-07 Score=57.13 Aligned_cols=46 Identities=13% Similarity=0.090 Sum_probs=39.6
Q ss_pred CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
.++++||.+++||++++++..+++.+.+++ +.+++.||+||+++++
T Consensus 323 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~--~~l~~~YG~TE~~~~~ 368 (570)
T 4gr5_A 323 EAFEGVRYAITGGEPASVPHVAKARRDHPA--LRLGNGYGPAESMGFT 368 (570)
T ss_dssp GGGTTCSEEEEESSCCCHHHHHHHHHHCTT--CEEEEEECCGGGCSCS
T ss_pred hhCCCceEEEEecccCCHHHHHHHHHhCCC--cEEEEeechhhheeee
Confidence 357889999999999999999999888753 7899999999987554
No 32
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=98.47 E-value=1.1e-07 Score=57.15 Aligned_cols=45 Identities=18% Similarity=0.139 Sum_probs=39.5
Q ss_pred CCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 9 DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 9 ~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
+++++|.+++||+++++++.+++.+.++ +.+++.||+||++..++
T Consensus 270 ~l~~lr~i~~gg~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~ 314 (505)
T 3nyq_A 270 ALAGARLLVSGSAALPVHDHERIAAATG---RRVIERYGMTETLMNTS 314 (505)
T ss_dssp HHHHCSEEEECSSCCCHHHHHHHHHHHS---CCCEEEEEETTTEEEEE
T ss_pred ccccceEEEECCCCCCHHHHHHHHHhcC---Ceeecccchhhcccccc
Confidence 4567899999999999999999999988 88999999999976543
No 33
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=98.33 E-value=6.8e-07 Score=53.33 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=35.5
Q ss_pred ccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 12 SLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 12 ~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
+||.+.+||+++++++.+++.+ ++ +.+++.||+||++..+
T Consensus 275 ~lr~i~~gG~~l~~~~~~~~~~-~~---~~~~~~YG~TE~~~~~ 314 (501)
T 3ipl_A 275 NLQKILLGGAKLSATMIETALQ-YN---LPIYNSFGMTETCSQF 314 (501)
T ss_dssp TCCEEEECSSCCCHHHHHHHHH-TT---CCEEEEEEEGGGTEEE
T ss_pred cccEEEEeCCCCCHHHHHHHHH-hC---CCEeccccccccccce
Confidence 7999999999999999998876 46 8899999999997644
No 34
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=98.31 E-value=3.5e-07 Score=55.67 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=36.5
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
..++++||.+++||+++++++.+++.+. +.+++.||+||++.++
T Consensus 289 ~~~~~~lr~~~~gG~~l~~~~~~~~~~~-----~~~~~~YG~TE~~~~~ 332 (563)
T 1amu_A 289 PERILSIQTLITAGSATSPSLVNKWKEK-----VTYINAYGPTETTICA 332 (563)
T ss_dssp TTTCCSCSEEEEESSCCCHHHHHHHTTT-----SEEEEEECCGGGSSCS
T ss_pred hcccccccEEEEEEecCCHHHHHHHHhC-----CeEEEEECcCHHhHhh
Confidence 3457889999999999999998887553 5789999999997554
No 35
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=98.20 E-value=1.2e-06 Score=57.59 Aligned_cols=44 Identities=16% Similarity=0.139 Sum_probs=38.4
Q ss_pred CCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058 10 LNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55 (59)
Q Consensus 10 ~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~ 55 (59)
+++||.+++||++++++..+++.+.++. ..+++.||+||++..+
T Consensus 719 ~~~lr~~~~gGe~l~~~~~~~~~~~~~~--~~l~n~YG~TE~~~~~ 762 (1304)
T 2vsq_A 719 MKGLRCILFGGERASVPHVRKALRIMGP--GKLINCYGPTEGTVFA 762 (1304)
T ss_dssp HHTCSEEEEESSCCCHHHHHHHHHHHCT--TCEEEEECCGGGSSCS
T ss_pred CCCccEEEEecCCCCHHHHHHHHHhCCC--CEEEEeEChhHHhHHh
Confidence 5679999999999999999999988863 6899999999997654
No 36
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=97.88 E-value=7.7e-06 Score=48.95 Aligned_cols=45 Identities=27% Similarity=0.347 Sum_probs=36.4
Q ss_pred CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058 7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56 (59)
Q Consensus 7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 56 (59)
..++++||.+..+|++ +..+++.+.+++ +.+++.||+||++.+++
T Consensus 268 ~~~l~~lr~~~~~g~~---~~~~~~~~~~~~--~~~~~~YG~TE~~~~~~ 312 (509)
T 3ivr_A 268 PAQLASLRAVTGLDTP---ETIERFEATCPN--ATFWATFGQSETSGLST 312 (509)
T ss_dssp GGGGTTCCEEEEECCH---HHHHHHHHHCTT--CEEEEEEEEGGGTEEEE
T ss_pred ccchhhhheecccCCh---HHHHHHHHhcCC--CeEEcccCccccccccc
Confidence 4567889999999876 778888888842 88999999999986543
No 37
>2v7s_A Probable conserved lipoprotein LPPA; unknown function, putative lipoprotein; 1.96A {Mycobacterium tuberculosis}
Probab=26.55 E-value=39 Score=18.86 Aligned_cols=36 Identities=6% Similarity=-0.019 Sum_probs=24.0
Q ss_pred cceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccc
Q psy10058 13 LRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGG 53 (59)
Q Consensus 13 lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~ 53 (59)
++.+... .+++++.+..+..... .....||+|+...
T Consensus 117 ~~~vlf~-gpIpe~~Wp~A~aiVR----e~AA~~GaT~~~~ 152 (215)
T 2v7s_A 117 ANSVMFG-ATFSAEDFKIAANIVR----EEAAKYGATTESS 152 (215)
T ss_dssp CCCEEES-SCCCHHHHHHHHHHHH----HHHHTTTCCEEEC
T ss_pred hhhhhcc-CCCCHHHHHHHHHHHH----HHHHHcCCccccc
Confidence 4444444 4789999888776642 3457788887654
No 38
>2vd2_A ATP phosphoribosyltransferase; HISG, glycosyltransferase, histidine biosynthes amino-acid biosynthesis; 2.85A {Bacillus subtilis}
Probab=23.48 E-value=73 Score=17.59 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058 24 NPEAWQWYYHSIGGGKCSIVDTFWQTETGGH 54 (59)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~ 54 (59)
.+.+.+++.+..|- ++.++..||.+|..+.
T Consensus 119 yp~l~~~yf~~~gi-~~~ii~l~GsvE~aP~ 148 (214)
T 2vd2_A 119 YPNVASSYFREQGE-QVEIIKLNGSIELAPL 148 (214)
T ss_dssp CHHHHHHHHHHHCC-CCEEEECCSCTTHHHH
T ss_pred cHHHHHHHHHHcCC-cEEEEECCCceeeccC
Confidence 47777777766552 2568899999998753
No 39
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: c.94.1.1 PDB: 1z7n_E*
Probab=23.02 E-value=72 Score=17.50 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058 24 NPEAWQWYYHSIGGGKCSIVDTFWQTETGGH 54 (59)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~ 54 (59)
.|.+.+++.+..|- .+.++..||.+|..+.
T Consensus 117 yp~l~~~yf~~~gi-~~~ii~l~GsvE~ap~ 146 (208)
T 1z7m_E 117 YPRVTKKYFAQKQE-DIEIIKLEGSVELGPV 146 (208)
T ss_dssp CHHHHHHHHHHTTC-CEEEEECSSCTTHHHH
T ss_pred chHHHHHHHHHcCC-ceEEEECCCceeeccC
Confidence 57777777766552 2568899999998753
No 40
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=20.80 E-value=63 Score=16.11 Aligned_cols=15 Identities=13% Similarity=0.585 Sum_probs=12.3
Q ss_pred CCCCHHHHHHHHHHh
Q psy10058 21 EPINPEAWQWYYHSI 35 (59)
Q Consensus 21 ~~~~~~~~~~~~~~~ 35 (59)
.|.+.++.+|++..+
T Consensus 25 aPSSkeTyEWLqAal 39 (111)
T 1xg8_A 25 APTSKDIYDWLQPLL 39 (111)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHH
Confidence 588899999988665
No 41
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=20.48 E-value=92 Score=19.78 Aligned_cols=35 Identities=11% Similarity=0.019 Sum_probs=21.4
Q ss_pred cceeeecCCCCCHHHHHHHHHHhCCCccceE-eccccCccc
Q psy10058 13 LRVLGSVGEPINPEAWQWYYHSIGGGKCSIV-DTFWQTETG 52 (59)
Q Consensus 13 lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~-~~yG~TE~~ 52 (59)
+..+.+|+. ..=.++++..+|+ .++. ..|+.||..
T Consensus 302 l~~~~~G~~---~~Y~~~l~~~~g~--~p~~~~~Y~ASEg~ 337 (581)
T 4eql_A 302 IETVVTGSM---GQYVPMLNYYCND--LPLVSTTYGSSETT 337 (581)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTT--CCEECCEEECSSCE
T ss_pred EEEEcCCCh---HHHHHHHHHHcCC--CccccCccccccce
Confidence 555666663 3333445555553 6666 999999964
No 42
>1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A {Thermotoga maritima} SCOP: c.94.1.1 PDB: 1o64_A 1usy_E* 1usy_H*
Probab=20.45 E-value=88 Score=17.40 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058 24 NPEAWQWYYHSIGGGKCSIVDTFWQTETGGH 54 (59)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~ 54 (59)
-|.+.+++.+..|- ++.++..+|.+|..+.
T Consensus 110 yp~l~r~yf~~~Gi-~~~Ii~l~GsvE~aP~ 139 (219)
T 1o63_A 110 FPNVTQRYCESKGW-HCRIIPLKGSVELAPI 139 (219)
T ss_dssp CHHHHHHHHHHHTC-CEEEEECSSCTTHHHH
T ss_pred cHHHHHHHHHHCCC-ceEEEECCCceeeccC
Confidence 46777777666552 2568899999998753
No 43
>3sb1_A Hydrogenase expression protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, HUPH, unkno function; HET: PGE; 1.67A {Thiobacillus denitrificans}
Probab=20.03 E-value=1.1e+02 Score=16.15 Aligned_cols=31 Identities=23% Similarity=0.546 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHHhCCCccce-EeccccCcc
Q psy10058 21 EPINPEAWQWYYHSIGGGKCSI-VDTFWQTET 51 (59)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~i-~~~yG~TE~ 51 (59)
=|++++....+.+.+|.+-+.+ +.+||-++.
T Consensus 74 LPls~~D~~~L~~~LGeGEVsi~~~g~g~~rI 105 (160)
T 3sb1_A 74 LPLTPGDLEWLRAELGGGEVSVTLHADGASTL 105 (160)
T ss_dssp SCCCHHHHHHHHHHHCCCSEEEEEC-CCEEEE
T ss_pred CCCCHHHHHHHHHHhCCCceEEEEcCCCcEEE
Confidence 3789999999999987533333 456776543
Done!