RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10058
         (59 letters)



>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
           [TaxId: 28901]}
          Length = 643

 Score = 64.7 bits (157), Expect = 6e-15
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query: 5   PQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTPR 59
            +  D +SLR+LGSVGEPINPEAW+WY+  IG  KC +VDT+WQTETGG ++TP 
Sbjct: 368 IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL 422


>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 640

 Score = 54.9 bits (131), Expect = 1e-11
 Identities = 33/57 (57%), Positives = 40/57 (70%)

Query: 3   SYPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTPR 59
           SY + H L SLR LGSVGEPI  E W+WY   IG  +  IVDT+WQTE+G H++TP 
Sbjct: 353 SYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPL 409


>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
           {Thermus thermophilus [TaxId: 274]}
          Length = 534

 Score = 30.2 bits (67), Expect = 0.007
 Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 4/56 (7%)

Query: 4   YPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTPR 59
               H L +LR L   G    P +    +  +G     +   +  TET   V+   
Sbjct: 279 ESTGHRLKTLRRLVVGGSAA-PRSLIARFERMG---VEVRQGYGLTETSPVVVQNF 330


>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
           sp. [TaxId: 512]}
          Length = 503

 Score = 29.2 bits (64), Expect = 0.016
 Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 3/55 (5%)

Query: 5   PQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTPR 59
                L+SLR +   G  +     +  +  +       V+ +  TE    +   +
Sbjct: 266 GSSLKLDSLRHVTFAGATMPDAVLETVHQHLP---GEKVNIYGTTEAMNSLYMRQ 317


>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain,
          C-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 150

 Score = 25.2 bits (55), Expect = 0.48
 Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 6  QKHDLNSLRVLGSVGEPINPEAWQWYYHSI---GGGKCS 41
           + +LN + + G++G  +N          I    GG+ +
Sbjct: 8  AQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPA 46


>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 233

 Score = 22.6 bits (48), Expect = 4.1
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 3  SYPQKHDLNSLRVLGSVGEPI 23
          SYP K   N + ++   G  I
Sbjct: 1  SYPNKTHPNYISIINEDGNEI 21


>d1qbaa2 b.2.2.3 (A:28-200) Bacterial chitobiase, n-terminal
          domain {Serratia marcescens [TaxId: 615]}
          Length = 173

 Score = 22.6 bits (48), Expect = 4.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 15 VLGSVGEPINPEAWQWYYHSI 35
           L + G+ I+ + W  Y+HS 
Sbjct: 45 TLSNDGQAIDGKDWVIYFHSP 65


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.137    0.469 

Gapped
Lambda     K      H
   0.267   0.0419    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 253,289
Number of extensions: 8696
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 9
Length of query: 59
Length of database: 2,407,596
Length adjustment: 29
Effective length of query: 30
Effective length of database: 2,009,426
Effective search space: 60282780
Effective search space used: 60282780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)