BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1006
(239 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 80/130 (61%), Gaps = 3/130 (2%)
Query: 109 AIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLL 168
AI + L+ + N+FI SLA AD +GL ++PF A+ LM W FG+FWC+ +++DVL
Sbjct: 65 AIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLC 124
Query: 169 CTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPL-LGWKVE 227
TASI LC+I++DRY++IT Y T +A V+I MVWI+S + P+ + W
Sbjct: 125 VTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWY-- 182
Query: 228 RHDHQQYPKC 237
R HQ+ C
Sbjct: 183 RATHQEAINC 192
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 80/130 (61%), Gaps = 3/130 (2%)
Query: 109 AIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLL 168
AI + L+ + N+FI SLA AD +GL ++PF A+ LM W FG+FWC+ +++DVL
Sbjct: 64 AIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLC 123
Query: 169 CTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPL-LGWKVE 227
TASI LC+I++DRY++IT Y T +A V+I MVWI+S + P+ + W
Sbjct: 124 VTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWY-- 181
Query: 228 RHDHQQYPKC 237
R HQ+ C
Sbjct: 182 RATHQEAINC 191
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 80/130 (61%), Gaps = 3/130 (2%)
Query: 109 AIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLL 168
AI + L+ + N+FI SLA AD +GL ++PF A+ LM W FG+FWC+ +++DVL
Sbjct: 34 AIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLC 93
Query: 169 CTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPL-LGWKVE 227
TASI LC+I++DRY++IT Y T +A V+I MVWI+S + P+ + W
Sbjct: 94 VTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWY-- 151
Query: 228 RHDHQQYPKC 237
R HQ+ C
Sbjct: 152 RATHQEAINC 161
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 80/130 (61%), Gaps = 3/130 (2%)
Query: 109 AIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLL 168
AI + L+ + N+FI SLA AD +GL ++PF A+ LM W FG+FWC+ +++DVL
Sbjct: 57 AIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLC 116
Query: 169 CTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPL-LGWKVE 227
TASI LC+I++DRY++IT Y T +A V+I MVWI+S + P+ + W
Sbjct: 117 VTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWY-- 174
Query: 228 RHDHQQYPKC 237
R HQ+ C
Sbjct: 175 RATHQEAINC 184
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 80/130 (61%), Gaps = 3/130 (2%)
Query: 109 AIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLL 168
AI + L+ + N+FI SLA AD +GL ++PF A+ LM W FG+FWC+ +++DVL
Sbjct: 58 AIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLC 117
Query: 169 CTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPL-LGWKVE 227
TASI LC+I++DRY++IT Y T +A V+I MVWI+S + P+ + W
Sbjct: 118 VTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWY-- 175
Query: 228 RHDHQQYPKC 237
R HQ+ C
Sbjct: 176 RATHQEAINC 185
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 80/130 (61%), Gaps = 3/130 (2%)
Query: 109 AIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLL 168
AI + L+ + N+FI SLA AD +GL ++PF A+ LM W FG+FWC+ +++DVL
Sbjct: 65 AIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLC 124
Query: 169 CTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPL-LGWKVE 227
TASI LC+I++DRY++IT Y T +A V+I MVWI+S + P+ + W
Sbjct: 125 VTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHW--Y 182
Query: 228 RHDHQQYPKC 237
R HQ+ C
Sbjct: 183 RATHQEAINC 192
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 103 bits (258), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 79/130 (60%), Gaps = 3/130 (2%)
Query: 109 AIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLL 168
AI + L+ + N+FI SLA AD +GL ++PF A LM W FG+FWC+ +++DVL
Sbjct: 33 AIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILMKMWTFGNFWCEFWTSIDVLC 92
Query: 169 CTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPL-LGWKVE 227
TASI LC+I++DRY++IT Y T +A V+I MVWI+S + P+ + W
Sbjct: 93 VTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHW--Y 150
Query: 228 RHDHQQYPKC 237
R HQ+ C
Sbjct: 151 RATHQEAINC 160
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 103 bits (257), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 79/130 (60%), Gaps = 3/130 (2%)
Query: 109 AIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLL 168
AI + L+ + N+FI SLA AD +GL ++PF A+ L W FG+FWC+ +++DVL
Sbjct: 206 AIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLC 265
Query: 169 CTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPL-LGWKVE 227
TASI LC+I++DRY++IT Y T +A V+I MVWI+S + P+ + W
Sbjct: 266 VTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWY-- 323
Query: 228 RHDHQQYPKC 237
R HQ+ C
Sbjct: 324 RATHQEAINC 333
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 79/130 (60%), Gaps = 3/130 (2%)
Query: 109 AIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLL 168
AI + L+ + N+FI SLA AD +GL ++PF A+ L W FG+FWC+ +++DVL
Sbjct: 29 AIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLC 88
Query: 169 CTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPL-LGWKVE 227
TASI LC+I++DRY++IT Y T +A V+I MVWI+S + P+ + W
Sbjct: 89 VTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWY-- 146
Query: 228 RHDHQQYPKC 237
R HQ+ C
Sbjct: 147 RATHQEAINC 156
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 80/130 (61%), Gaps = 3/130 (2%)
Query: 109 AIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLL 168
AI + + L+ + N FI SLA AD +GL+++PF + G W++GSF C++ +++DVL
Sbjct: 35 AIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLC 94
Query: 169 CTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVIC-IPPLLGWKVE 227
TASI LC+I++DRY +IT Y T RA V+I VW +SA++ +P ++ W
Sbjct: 95 VTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHW--W 152
Query: 228 RHDHQQYPKC 237
R + Q KC
Sbjct: 153 RDEDPQALKC 162
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 80/130 (61%), Gaps = 3/130 (2%)
Query: 109 AIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLL 168
AI + + L+ + N FI SLA AD +GL+++PF + G W++GSF C++ +++DVL
Sbjct: 35 AIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLC 94
Query: 169 CTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVIC-IPPLLGWKVE 227
TASI LC+I++DRY +IT Y T RA V+I VW +SA++ +P ++ W
Sbjct: 95 VTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHW--W 152
Query: 228 RHDHQQYPKC 237
R + Q KC
Sbjct: 153 RDEDPQALKC 162
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 70/117 (59%)
Query: 109 AIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLL 168
A K LK + N+F+ SLA AD IG+I M +M W G+ CD+ ++D +
Sbjct: 36 AFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWALGNLACDLWLSIDYVA 95
Query: 169 CTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWK 225
AS++NL +IS DRY+SIT+ + Y KRT RA VMI + W++S V+ P +L W+
Sbjct: 96 SNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAWVISFVLWAPAILFWQ 152
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 72/120 (60%), Gaps = 4/120 (3%)
Query: 109 AIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMG-YWIFGSFWCDIHSAMDVL 167
A++ E++L+ N+ + SLAVAD + ++MP+ + E+ G W F CD+ +DV+
Sbjct: 62 AVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVM 121
Query: 168 LCTASIINLCLISLDRYWSITQAIDY---LKKRTPGRAMVMITMVWILSAVICIPPLLGW 224
+CTASI NLC IS+DRY ++ + Y + + R +MIT VW+L+ + P L G+
Sbjct: 122 MCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGF 181
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 69/117 (58%)
Query: 109 AIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLL 168
+I + L+ + N+F+ SLA AD IG+ M ++GYW G CD+ A+D ++
Sbjct: 47 SIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVV 106
Query: 169 CTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWK 225
AS++NL +IS DRY+ +T+ + Y KRT A +MI W+LS ++ P +L W+
Sbjct: 107 SNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQ 163
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 75/132 (56%), Gaps = 3/132 (2%)
Query: 109 AIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLL 168
A+ +E+ L + N +I SL+VAD +G ++MP ++ LM W G C +MD +
Sbjct: 32 AVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSMDYVA 91
Query: 169 CTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWK--V 226
TASI ++ ++ +DRY S+ Q + YLK RT RA I W LS + I P+LGW +
Sbjct: 92 STASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVI-PILGWNHFM 150
Query: 227 ERHDHQQYPKCE 238
++ ++ KCE
Sbjct: 151 QQTSVRREDKCE 162
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 110 IMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLC 169
I+ +K N +I +LA+AD ++ +PF N LMG W FG+ C I ++D
Sbjct: 42 IVRYTKMKTATNIYIFNLALAD-ALATSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNM 100
Query: 170 TASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIP 219
SI LC +S+DRY ++ + L RTP A ++ WILS+ I +P
Sbjct: 101 FTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLP 150
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
Query: 114 KSLKNIQNWFIASLAVADFSIGLI-IMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTAS 172
KSL+ N FI +LA +DF+ L+ P + + WIFG C ++ + + S
Sbjct: 63 KSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMS 122
Query: 173 IINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGW 224
I+ + +IS+DRY I + + KK + RA +MI VW+ S + I P+ GW
Sbjct: 123 IMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGW 174
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
Query: 114 KSLKNIQNWFIASLAVADFSIGLI-IMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTAS 172
KSL+ N FI +LA +DF+ L+ P + + WIFG C ++ + + S
Sbjct: 62 KSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMS 121
Query: 173 IINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGW 224
I+ + +IS+DRY I + + KK + RA +MI VW+ S + I P+ GW
Sbjct: 122 IMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGW 173
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 7/130 (5%)
Query: 109 AIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLL 168
A+ +L+N+ N+F+ SLA AD ++G++ +PF++ + + C + ++L
Sbjct: 45 AVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVL 102
Query: 169 CTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWK--- 225
+SI +L I++DRY +I + Y T RA +I + W+LS I + P+LGW
Sbjct: 103 TQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCG 162
Query: 226 --VERHDHQQ 233
E +H Q
Sbjct: 163 QPKEGKNHSQ 172
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 7/130 (5%)
Query: 109 AIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLL 168
A+ +L+N+ N+F+ SLA AD ++G++ +PF++ + + C + ++L
Sbjct: 55 AVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVL 112
Query: 169 CTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWK--- 225
+SI +L I++DRY +I + Y T RA +I + W+LS I + P+LGW
Sbjct: 113 TQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCG 172
Query: 226 --VERHDHQQ 233
E +H Q
Sbjct: 173 QPKEGKNHSQ 182
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 7/130 (5%)
Query: 109 AIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLL 168
A+ +L+N+ N+F+ SLA AD ++G++ +PF++ + + C + ++L
Sbjct: 30 AVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAI--TISTGFCAACHGCLFIACFVLVL 87
Query: 169 CTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWK--- 225
+SI +L I++DRY +I + Y T RA +I + W+LS I + P+LGW
Sbjct: 88 TQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCG 147
Query: 226 --VERHDHQQ 233
E H Q
Sbjct: 148 QPKEGKQHSQ 157
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 1/123 (0%)
Query: 110 IMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLC 169
I+ +K N +I +LA+AD ++ L+ +PF + L+G+W FG+ C A+D
Sbjct: 150 ILRHTKMKTATNIYIFNLALAD-TLVLLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNM 208
Query: 170 TASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVERH 229
S L +S+DRY +I I L RT +A + +W L++V+ +P + +
Sbjct: 209 FTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAIMGSAQVE 268
Query: 230 DHQ 232
D +
Sbjct: 269 DEE 271
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 7/130 (5%)
Query: 109 AIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLL 168
A+ +L+N+ N+F+ SLA AD +G++ +PF++ + + C + ++L
Sbjct: 30 AVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFAI--TISTGFCAACHGCLFIACFVLVL 87
Query: 169 CTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWK--- 225
+SI +L I++DRY +I + Y T RA +I + W+LS I + P+LGW
Sbjct: 88 AQSSIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLSFAIGLTPMLGWNNCG 147
Query: 226 --VERHDHQQ 233
E +H Q
Sbjct: 148 QPKEGKNHSQ 157
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Query: 109 AIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLL 168
A+ +L+N+ N+F+ S A AD +G++ +PF++A + + C + ++L
Sbjct: 30 AVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIA--ISTGFCAACHGCLFIACFVLVL 87
Query: 169 CTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGW 224
+SI +L I++DRY +I + Y T RA +I + W+LS I + P+LGW
Sbjct: 88 TASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGW 143
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 109 AIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLL 168
I+ LK N +I +LA+AD ++ +PF A LM W FG C ++D
Sbjct: 38 GIVRYTKLKTATNIYIFNLALAD-ALATSTLPFQSAKYLMETWPFGELLCKAVLSIDYYN 96
Query: 169 CTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIP 219
SI L ++S+DRY ++ + L RTP +A ++ +W+L++ + +P
Sbjct: 97 MFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGVP 147
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 110 IMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLC 169
I+ +K N +I +LA+AD ++ MPF LM W FG C I ++D
Sbjct: 47 IIRYTKMKTATNIYIFNLALAD-ALVTTTMPFQSTVYLMNSWPFGDVLCKIVLSIDYYNM 105
Query: 170 TASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPL-LGWKVER 228
SI L ++S+DRY ++ + L RTP +A ++ +W+LS+ + I + LG R
Sbjct: 106 FTSIFTLTMMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLLSSSVGISAIVLGGTKVR 165
Query: 229 HD 230
D
Sbjct: 166 ED 167
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 110 IMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLC 169
I+ K ++ + N+F+ +LA A+ S+ + + W +G F+C H+ +
Sbjct: 57 ILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAV 116
Query: 170 TASIINLCLISLDRYWSITQAIDYLKKRTPGRAM-VMITMVWILSAVICIP 219
ASI ++ ++ DRY +I I L+ R A V+I ++W+L+ ++ P
Sbjct: 117 FASIYSMTAVAFDRYMAI---IHPLQPRLSATATKVVICVIWVLALLLAFP 164
>pdb|1HLL|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The
Alpha- 2a Adrenergic Receptor
Length = 32
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/32 (75%), Positives = 28/32 (87%)
Query: 170 TASIINLCLISLDRYWSITQAIDYLKKRTPGR 201
T+SI++LC ISLDRYWSITQAI+Y KRTP R
Sbjct: 1 TSSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32
>pdb|1HOF|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The
Alpha- 2a Adrenergic Receptor
Length = 32
Score = 50.8 bits (120), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/31 (74%), Positives = 27/31 (87%)
Query: 171 ASIINLCLISLDRYWSITQAIDYLKKRTPGR 201
+SI++LC ISLDRYWSITQAI+Y KRTP R
Sbjct: 2 SSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 113 EKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTAS 172
K L+ N+ + +LAVAD + +L L GY++FG C++ L +
Sbjct: 66 HKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIA 125
Query: 173 IINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGW 224
+ +L +++++RY + + + + A++ + W+++ PPL+GW
Sbjct: 126 LWSLVVLAIERYVVVCKPMSNFRFGE-NHAIMGVAFTWVMALACAAPPLVGW 176
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 113 EKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTAS 172
K L+ N+ + +LAVAD + +L L GY++FG C++ L +
Sbjct: 65 HKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIA 124
Query: 173 IINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGW 224
+ +L +++++RY + + + + A++ + W+++ PPL+GW
Sbjct: 125 LWSLVVLAIERYVVVCKPMSNFRFGE-NHAIMGVAFTWVMALACAAPPLVGW 175
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 113 EKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTAS 172
K L+ N+ + +LAVAD + +L L GY++FG C++ L +
Sbjct: 66 HKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLQGFFATLGGEIA 125
Query: 173 IINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGW 224
+ +L +++++RY + + + + A++ + W+++ PPL+GW
Sbjct: 126 LWSLVVLAIERYVVVCKPMSNFRFGE-NHAIMGVAFTWVMALACAAPPLVGW 176
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 113 EKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTAS 172
+K L+++ + + L+VAD + +I +PF A + + W FG+F C + + +S
Sbjct: 76 QKKLRSMTDKYRLHLSVADL-LFVITLPF-WAVDAVANWYFGNFLCKAVHVIYTVNLYSS 133
Query: 173 IINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVERHDHQ 232
+ L ISLDRY +I A + + R V+ VWI + ++ IP + V D +
Sbjct: 134 VWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDR 193
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 113 EKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTAS 172
K L+ N+ + +LAVAD + +L L GY++FG C++ L +
Sbjct: 66 HKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIA 125
Query: 173 IINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGW 224
+ +L +++++RY + + + + A++ + W+++ PPL+GW
Sbjct: 126 LWSLVVLAIERYVVVCKPMSNFRFGE-NHAIMGVAFTWVMALACAAPPLVGW 176
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 113 EKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTAS 172
+K L+++ + + L+VAD + +I +PF A + + W FG+F C + + +S
Sbjct: 76 QKKLRSMTDKYRLHLSVADL-LFVITLPF-WAVDAVANWYFGNFLCKAVHVIYTVNLYSS 133
Query: 173 IINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVERHDHQ 232
+ L ISLDRY +I A + + R V+ VWI + ++ IP + V D +
Sbjct: 134 VWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDR 193
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 113 EKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTAS 172
K L+ N+ + +LAVAD + +L L GY++FG C++ L +
Sbjct: 65 HKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIA 124
Query: 173 IINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGW 224
+ +L +++++RY + + + + A++ + W+++ PPL+GW
Sbjct: 125 LWSLVVLAIERYVVVCKPMSNFRFGE-NHAIMGVAFTWVMALACAAPPLVGW 175
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 113 EKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTAS 172
K L+ N+ + +LAVAD + +L L GY++FG C++ L +
Sbjct: 66 HKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIA 125
Query: 173 IINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGW 224
+ +L +++++RY + + + + A++ + W+++ PPL+GW
Sbjct: 126 LWSLVVLAIERYVVVCKPMSNFRFGE-NHAIMGVAFTWVMALACAAPPLVGW 176
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 113 EKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTAS 172
+K L+++ + + L+VAD + +I +PF A + + W FG+F C + + +S
Sbjct: 76 QKKLRSMTDKYRLHLSVADL-LFVITLPF-WAVDAVANWYFGNFLCKAVHVIYTVNLYSS 133
Query: 173 IINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVERHDHQ 232
+ L ISLDRY +I A + + R V+ VWI + ++ IP + V D +
Sbjct: 134 VWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDR 193
>pdb|1HO9|A Chain A, Best 20 Nmr Conformers Of D130i Mutant T3-I2, A 32 Residue
Peptide From The Alpha 2a Adrenergic Receptor
pdb|1HOD|A Chain A, Nmr Structure Of D130i Mutant T3-I2, A 32 Residue Peptide
From The Alpha 2a Adrenergic Receptor
Length = 32
Score = 46.6 bits (109), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 171 ASIINLCLISLDRYWSITQAIDYLKKRTPGR 201
+SI++LC ISL RYWSITQAI+Y KRTP R
Sbjct: 2 SSIVHLCAISLIRYWSITQAIEYNLKRTPRR 32
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 127 LAVADFSIGLIIMPFSLANELMGY-WIFGSFWCDIHSAMDVLLCTASIINLCLISLDRYW 185
LA AD + + ++PF ++ G W FGS C +A ASI+ + +IS+DR+
Sbjct: 62 LATADV-LFVSVLPFKISYYFSGSDWQFGSELCRFVTAAFYCNMYASILLMTVISIDRFL 120
Query: 186 SITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLL 222
++ + L RT GRA +W L+ +P LL
Sbjct: 121 AVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPLLL 157
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 151 WIFGSFWCDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMV- 209
WIFG+F C + S + + + I+ L IS+DRY +I A L ++ R +V +
Sbjct: 75 WIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQK---RHLVKFVCLG 131
Query: 210 -WILSAVICIPPLLGWKVERHDHQQYPKC 237
W LS + +P L ++ H + P C
Sbjct: 132 CWGLSMNLSLPFFL-FRQAYHPNNSSPVC 159
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 113 EKSLKNIQ---NWFIASLAVADFSIGLIIMPFSLANELMGY--WIFGSFWCDIHSAMDVL 167
+KSL+++Q ++ + SLA++D I L+ MP L N + + W FG C + +
Sbjct: 60 KKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAGCRGYYFLRDA 119
Query: 168 LCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLL 222
A+ +N+ +S+ RY +I + R I+ +W+ SA++ IP L
Sbjct: 120 CTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLF 174
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 122 WFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTASIINLCLISL 181
+FI +LA++D G+ L + Y + + W +M V L +AS+ +L I++
Sbjct: 100 YFIGNLALSDLLAGVAYTANLLLSGATTYKLTPAQWFLREGSMFVAL-SASVFSLLAIAI 158
Query: 182 DRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGW 224
+RY ++ + + R ++I+ W++S ++ P++GW
Sbjct: 159 ERYITMLK-MKLHNGSNNFRLFLLISACWVISLILGGLPIMGW 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.136 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,364,638
Number of Sequences: 62578
Number of extensions: 147224
Number of successful extensions: 391
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 339
Number of HSP's gapped (non-prelim): 43
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)