Query psy1006
Match_columns 239
No_of_seqs 227 out of 2047
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 16:51:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 99.9 7.4E-28 1.6E-32 203.6 8.8 150 78-229 28-177 (423)
2 PHA03234 DNA packaging protein 99.9 7.9E-25 1.7E-29 188.8 17.0 141 83-227 30-172 (338)
3 KOG4220|consensus 99.9 2.6E-26 5.7E-31 194.2 1.8 145 83-227 28-172 (503)
4 PHA02834 chemokine receptor-li 99.9 1.4E-23 3E-28 180.2 16.6 137 86-226 29-165 (323)
5 PHA02638 CC chemokine receptor 99.9 4.7E-23 1E-27 182.4 17.3 141 84-227 97-237 (417)
6 PHA03087 G protein-coupled che 99.9 1.2E-22 2.6E-27 175.2 15.4 143 84-228 39-181 (335)
7 PHA03235 DNA packaging protein 99.9 3.2E-22 6.9E-27 176.5 17.1 138 83-223 30-169 (409)
8 PF00001 7tm_1: 7 transmembran 99.9 2.2E-22 4.8E-27 164.7 13.3 137 102-238 1-137 (257)
9 KOG2087|consensus 99.7 9.9E-17 2.1E-21 134.9 8.4 156 74-229 13-175 (363)
10 PF10320 7TM_GPCR_Srsx: Serpen 99.6 2.2E-15 4.9E-20 125.4 7.0 120 97-218 2-121 (257)
11 PF10328 7TM_GPCR_Srx: Serpent 99.4 7E-12 1.5E-16 105.3 12.0 132 95-226 3-135 (274)
12 PF10324 7TM_GPCR_Srw: Serpent 99.0 3.1E-09 6.6E-14 91.1 11.9 135 94-228 5-150 (318)
13 PF10323 7TM_GPCR_Srv: Serpent 98.5 4.3E-07 9.3E-12 76.7 6.8 129 97-225 6-143 (283)
14 PF05462 Dicty_CAR: Slime mold 98.4 8E-06 1.7E-10 69.4 14.3 129 87-223 8-136 (303)
15 PF11710 Git3: G protein-coupl 98.4 1.6E-05 3.4E-10 63.8 13.2 92 99-190 14-106 (201)
16 PF05296 TAS2R: Mammalian tast 98.3 4.4E-05 9.5E-10 65.1 16.2 130 85-214 6-142 (303)
17 PF10316 7TM_GPCR_Srbc: Serpen 98.0 0.00023 5.1E-09 59.6 13.0 121 86-206 6-129 (273)
18 PF10292 7TM_GPCR_Srab: Serpen 97.9 0.0015 3.3E-08 56.3 17.3 128 88-216 19-153 (324)
19 PF10321 7TM_GPCR_Srt: Serpent 97.8 0.00019 4.1E-09 61.4 10.6 119 86-209 33-157 (313)
20 PF10317 7TM_GPCR_Srd: Serpent 97.7 0.0012 2.6E-08 56.0 13.3 128 91-223 4-142 (292)
21 PF02118 Srg: Srg family chemo 97.4 0.0017 3.6E-08 54.4 10.3 128 94-222 6-144 (275)
22 PF03402 V1R: Vomeronasal orga 97.0 0.0013 2.8E-08 54.8 5.5 102 115-219 6-112 (265)
23 PF00002 7tm_2: 7 transmembran 96.9 0.00044 9.5E-09 56.8 1.9 126 94-224 9-134 (242)
24 PF02117 7TM_GPCR_Sra: Serpent 95.8 0.46 1E-05 41.0 14.0 107 86-193 21-136 (328)
25 PF10326 7TM_GPCR_Str: Serpent 95.2 0.0092 2E-07 50.8 1.6 110 94-204 7-127 (307)
26 PF02101 Ocular_alb: Ocular al 94.9 0.93 2E-05 39.6 12.8 95 121-221 68-173 (405)
27 PF03383 Serpentine_r_xa: Caen 94.3 0.074 1.6E-06 40.5 4.3 59 164-222 50-108 (153)
28 PF06681 DUF1182: Protein of u 93.6 0.74 1.6E-05 36.7 8.7 93 94-192 49-151 (226)
29 PF04789 DUF621: Protein of un 93.6 3.6 7.8E-05 34.5 13.0 120 102-222 31-154 (305)
30 KOG4193|consensus 93.3 1.1 2.3E-05 42.0 10.8 116 96-222 330-447 (610)
31 PF01534 Frizzled: Frizzled/Sm 93.3 5.1 0.00011 34.7 14.7 143 86-231 9-165 (328)
32 PF03125 Sre: C. elegans Sre G 92.3 7.3 0.00016 34.1 14.7 112 85-196 26-161 (365)
33 PF10327 7TM_GPCR_Sri: Serpent 92.2 3.2 7E-05 35.4 11.6 129 87-217 10-148 (303)
34 PF10318 7TM_GPCR_Srh: Serpent 91.9 3.9 8.5E-05 34.5 11.8 134 89-224 7-149 (302)
35 PF02175 7TM_GPCR_Srb: Serpent 90.8 8 0.00017 31.6 14.3 47 152-198 79-125 (236)
36 PF10319 7TM_GPCR_Srj: Serpent 81.6 33 0.00072 29.4 11.1 113 94-206 13-136 (310)
37 PF01102 Glycophorin_A: Glycop 54.5 16 0.00034 26.8 3.1 20 99-118 76-95 (122)
38 PF02076 STE3: Pheromone A rec 53.8 1.4E+02 0.003 25.3 10.7 116 99-222 4-124 (283)
39 PF09882 DUF2109: Predicted me 47.1 65 0.0014 21.5 4.7 48 96-143 4-51 (78)
40 KOG4564|consensus 47.1 2.3E+02 0.005 26.0 16.4 131 90-224 149-291 (473)
41 PF15383 TMEM237: Transmembran 46.5 1.7E+02 0.0037 24.3 8.4 45 177-221 153-197 (253)
42 PF10322 7TM_GPCR_Sru: Serpent 44.0 2.1E+02 0.0045 24.6 12.9 70 155-225 100-169 (307)
43 PF11446 DUF2897: Protein of u 33.2 58 0.0013 20.2 2.7 19 94-112 10-28 (55)
44 COG1230 CzcD Co/Zn/Cd efflux s 31.9 3.3E+02 0.0071 23.3 10.4 66 92-160 127-193 (296)
45 PF09726 Macoilin: Transmembra 31.1 1.3E+02 0.0029 29.0 6.0 51 121-172 77-134 (697)
46 KOG1292|consensus 28.2 4.8E+02 0.01 24.1 9.7 29 194-222 201-229 (510)
47 PF15330 SIT: SHP2-interacting 24.9 1.2E+02 0.0025 21.7 3.5 28 89-116 4-31 (107)
48 PF10873 DUF2668: Protein of u 24.5 50 0.0011 24.9 1.5 33 86-118 62-94 (155)
49 KOG3609|consensus 23.9 7E+02 0.015 24.6 9.3 78 141-221 326-404 (822)
No 1
>KOG4219|consensus
Probab=99.95 E-value=7.4e-28 Score=203.63 Aligned_cols=150 Identities=25% Similarity=0.505 Sum_probs=141.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhh
Q psy1006 78 SGYSLTHIVIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFW 157 (239)
Q Consensus 78 ~~~~~~~~~~~~~~~~~i~~~gv~gN~lvl~~~~~~~~l~~~~~~li~~La~~Dll~~~~~~p~~i~~~~~~~~~~~~~~ 157 (239)
...+.+.+.+.++++.++.+++++||++|++++..+|++|+.+|+|++|||+||++++++..++...+.....|.+|..+
T Consensus 28 f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~ 107 (423)
T KOG4219|consen 28 FVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFY 107 (423)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccce
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhHHHHhHHhhHHHHHHHHHHhhhcccccc
Q psy1006 158 CDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVERH 229 (239)
Q Consensus 158 C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~~~~~~~~~~~~~~ 229 (239)
|++..|+......+|++++++||+|||.||.||++.+ .++|..+++++.||++|+++++|..+..+.+..
T Consensus 108 C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~ 177 (423)
T KOG4219|consen 108 CRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQLLYSSVEEL 177 (423)
T ss_pred eeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccceeeeeeEEe
Confidence 9999999999999999999999999999999999844 889999999999999999999999887765543
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.93 E-value=7.9e-25 Score=188.80 Aligned_cols=141 Identities=21% Similarity=0.275 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHhH
Q psy1006 83 THIVIASIFVIILMIIVIVGNMLVIIAI--MTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDI 160 (239)
Q Consensus 83 ~~~~~~~~~~~~i~~~gv~gN~lvl~~~--~~~~~l~~~~~~li~~La~~Dll~~~~~~p~~i~~~~~~~~~~~~~~C~~ 160 (239)
..+.+...++.+++++|++||+++++++ .+++++|+++|+|++|||++|++.++ .+|+.+... .+.|.+|+..||+
T Consensus 30 ~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l-~lp~~~~~~-~~~w~fG~~lCk~ 107 (338)
T PHA03234 30 KAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHML-CVFFLTLNR-EALFNFNQAFCQC 107 (338)
T ss_pred HHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH-HHHHHHHHH-hCCccCchhHHHH
Confidence 3557778899999999999999999955 45667789999999999999999965 566666543 4579999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhHHHHhHHhhHHHHHHHHHHhhhcccc
Q psy1006 161 HSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVE 227 (239)
Q Consensus 161 ~~~~~~~~~~~s~~~l~~isidRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~~~~~~~~~~~~ 227 (239)
..++...+.++|++++++||+|||+||+||.+++. ++++....++++|+.+++.++|+++..+..
T Consensus 108 ~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~ 172 (338)
T PHA03234 108 VLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK--KNNHIGRNIGILFLASAMCAIPAALFVKTE 172 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhh--hhhhHHHHHHHHHHHHHHHHhhHhHeeeee
Confidence 99999999999999999999999999999988643 334444556667999999999998765433
No 3
>KOG4220|consensus
Probab=99.92 E-value=2.6e-26 Score=194.25 Aligned_cols=145 Identities=38% Similarity=0.692 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHhHHH
Q psy1006 83 THIVIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHS 162 (239)
Q Consensus 83 ~~~~~~~~~~~~i~~~gv~gN~lvl~~~~~~~~l~~~~~~li~~La~~Dll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~ 162 (239)
++-+.++++...+.++.++||++|++.+.-.|++++..|+|+.+||+|||+.|.+.+|+...+.+.++|+.|...|.+..
T Consensus 28 ~q~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWL 107 (503)
T KOG4220|consen 28 WQVVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWL 107 (503)
T ss_pred eEEEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHH
Confidence 34456677778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhHHHHhHHhhHHHHHHHHHHhhhcccc
Q psy1006 163 AMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVE 227 (239)
Q Consensus 163 ~~~~~~~~~s~~~l~~isidRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~~~~~~~~~~~~ 227 (239)
.+.+....+|++.+..|++|||..|.+|++|+..+|.+|+.++|++.|++++++..|-+..|+..
T Consensus 108 alDYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~Wqyi 172 (503)
T KOG4220|consen 108 ALDYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYI 172 (503)
T ss_pred HHHHHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 99999999999999999999999999999999999999999999999999999998888777644
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.91 E-value=1.4e-23 Score=180.24 Aligned_cols=137 Identities=23% Similarity=0.549 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHhHHHHHH
Q psy1006 86 VIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMD 165 (239)
Q Consensus 86 ~~~~~~~~~i~~~gv~gN~lvl~~~~~~~~l~~~~~~li~~La~~Dll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~~~~ 165 (239)
.+..+++.+++++|++||+++++++.++|++ ++.|++++|||++|++. .+.+|+.+... .++|.+|+..|++..++.
T Consensus 29 ~~~~~~~~li~v~~~~gN~lVi~vi~~~~~~-~~~n~~i~nLAiaDll~-~~~lP~~i~~~-~~~w~~g~~~C~~~~~~~ 105 (323)
T PHA02834 29 YFVIVFYILLFIFGLIGNVLVIAVLIVKRFM-FVVDVYLFNIAMSDLML-VFSFPFIIHND-LNEWIFGEFMCKLVLGVY 105 (323)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHhcccc-chhhhhhHHHHHHHHHH-HHHHHHHHHHH-cCCcCCcchHHHhHHHHH
Confidence 5667888899999999999999988876654 57899999999999986 66788876654 457999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhHHHHhHHhhHHHHHHHHHHhhhccc
Q psy1006 166 VLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKV 226 (239)
Q Consensus 166 ~~~~~~s~~~l~~isidRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~~~~~~~~~~~ 226 (239)
..+..+|++++++||+|||.+|++|+++++ .+.++++..++++|+++++.++|+++++..
T Consensus 106 ~~~~~~Si~tL~~IsidRY~aI~~P~~~~~-~~~~~~~~~i~~iWi~s~l~~~P~~~~~~~ 165 (323)
T PHA02834 106 FVGFFSNMFFVTLISIDRYILVVNATKIKN-KSISLSVLLSVAAWVCSVILSMPAMVLYYV 165 (323)
T ss_pred HHHHHHHHHHHHHHHHHHhhheeCchhccC-CccchHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 999999999999999999999999998644 455777788899999999999999876543
No 5
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.91 E-value=4.7e-23 Score=182.35 Aligned_cols=141 Identities=31% Similarity=0.588 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHhHHHH
Q psy1006 84 HIVIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSA 163 (239)
Q Consensus 84 ~~~~~~~~~~~i~~~gv~gN~lvl~~~~~~~~l~~~~~~li~~La~~Dll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~~ 163 (239)
.......++.+++++|++||.++++++.+ |++|+++|+++.|||++|++. ++..|+.+... .++|.+|+..|++..+
T Consensus 97 ~~~~l~~~y~lvfvlgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~-~l~lPf~i~~~-~~~W~fg~~~Ck~~~~ 173 (417)
T PHA02638 97 ISEYIKIFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIF-VIDFPFIIYNE-FDQWIFGDFMCKVISA 173 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHH-HHHHHHHHHHH-hccccccccchhhHHH
Confidence 44566777889999999999999987654 778999999999999999988 56788887654 4679999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhHHHHhHHhhHHHHHHHHHHhhhcccc
Q psy1006 164 MDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVE 227 (239)
Q Consensus 164 ~~~~~~~~s~~~l~~isidRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~~~~~~~~~~~~ 227 (239)
+...+.+++++.++++++|||+||+||.++++..+++++++.++++|++++++++|++++++..
T Consensus 174 l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~ 237 (417)
T PHA02638 174 SYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEAS 237 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999988888888888889999999999999999876543
No 6
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.90 E-value=1.2e-22 Score=175.16 Aligned_cols=143 Identities=23% Similarity=0.438 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHhHHHH
Q psy1006 84 HIVIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSA 163 (239)
Q Consensus 84 ~~~~~~~~~~~i~~~gv~gN~lvl~~~~~~~~l~~~~~~li~~La~~Dll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~~ 163 (239)
...+...++.+++++|++||.++++++.++ ++|++.++++.|||++|++.++ ..|..+.....+.|..++..|++..+
T Consensus 39 ~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~-~~~~~~~~~~~~~~~~~~~~C~~~~~ 116 (335)
T PHA03087 39 NSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFGEFACKIVSG 116 (335)
T ss_pred hhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHH-hHHHHHHHHhCCCCCCCcHHHHHHHH
Confidence 345677788889999999999999998888 8899999999999999998754 57777666667789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhHHHHhHHhhHHHHHHHHHHhhhccccc
Q psy1006 164 MDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVER 228 (239)
Q Consensus 164 ~~~~~~~~s~~~l~~isidRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~~~~~~~~~~~~~ 228 (239)
+...+..+|++++++||+|||++|++|++|++..+++++..+++++|+.+++.++|++..+....
T Consensus 117 ~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~ 181 (335)
T PHA03087 117 LYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKK 181 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhheeeeec
Confidence 99999999999999999999999999999999999999999999999999999999888765443
No 7
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.89 E-value=3.2e-22 Score=176.47 Aligned_cols=138 Identities=15% Similarity=0.267 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHhH
Q psy1006 83 THIVIASIFVIILMIIVIVGNMLVIIAIMT-EKS-LKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDI 160 (239)
Q Consensus 83 ~~~~~~~~~~~~i~~~gv~gN~lvl~~~~~-~~~-l~~~~~~li~~La~~Dll~~~~~~p~~i~~~~~~~~~~~~~~C~~ 160 (239)
..+.+..+++.+++++|++||+++++++.+ +|+ .++.+++|+.|||++|++. ++.+|+.+... ...|..|+..|++
T Consensus 30 ~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~~~-~~~~~~g~~~Ck~ 107 (409)
T PHA03235 30 AARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIMLSN-QGLLSGSVAGCKF 107 (409)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHHhc-CccccCCCCeehh
Confidence 345678888899999999999999987643 333 2456689999999999987 56788776432 1223345689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhHHHHhHHhhHHHHHHHHHHhhh
Q psy1006 161 HSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLG 223 (239)
Q Consensus 161 ~~~~~~~~~~~s~~~l~~isidRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~~~~~~~~ 223 (239)
..++...+..+|++++++||+|||.+|++|.++++ .+++++...++++|++++++++|+++.
T Consensus 108 ~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~-~~~~~a~~ii~~iWi~sll~s~P~~~~ 169 (409)
T PHA03235 108 ASLLYYASCTVGFATVALIAADRYRVIHQRTRARS-SAYRSTYKILGLTWFASLICSGPAPVY 169 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHeechhhccC-cccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999986543 468889999999999999999997654
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.89 E-value=2.2e-22 Score=164.68 Aligned_cols=137 Identities=36% Similarity=0.616 Sum_probs=123.3
Q ss_pred HHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1006 102 GNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTASIINLCLISL 181 (239)
Q Consensus 102 gN~lvl~~~~~~~~l~~~~~~li~~La~~Dll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isi 181 (239)
||+++++++.++|++|++.+++++|||++|++.++...|..+.....+.|..++..|++..++...+..++.++++++++
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~ 80 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISI 80 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999999988888877777889999999999999999999999999999999
Q ss_pred HHHHhhhhccccccccchhhHHHHhHHhhHHHHHHHHHHhhhccccccCCCCCCCcc
Q psy1006 182 DRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVERHDHQQYPKCE 238 (239)
Q Consensus 182 dRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~~~~~~~~~~~~~~~~~~~~~C~ 238 (239)
|||++|++|++|++..++++++..++++|+.+++.++|+.++.+.......+...|.
T Consensus 81 dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~ 137 (257)
T PF00001_consen 81 DRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCF 137 (257)
T ss_dssp HHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999988666554433234553
No 9
>KOG2087|consensus
Probab=99.68 E-value=9.9e-17 Score=134.90 Aligned_cols=156 Identities=22% Similarity=0.351 Sum_probs=130.9
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----
Q psy1006 74 TLYPSGYSLTHIVIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELM----- 148 (239)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~i~~~gv~gN~lvl~~~~~~~~l~~~~~~li~~La~~Dll~~~~~~p~~i~~~~~----- 148 (239)
+...+.+.....++..+..+++.++.++||.+|+......+...++..+++.|||++|+++++....+..++...
T Consensus 13 da~~pcEdllg~~~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~ 92 (363)
T KOG2087|consen 13 DAFNPCEDLLGYWILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYY 92 (363)
T ss_pred CCCCcHHHhhccceeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHH
Confidence 333444445556677778889999999999999998888887778889999999999999988766655554432
Q ss_pred --ccccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhHHHHhHHhhHHHHHHHHHHhhhccc
Q psy1006 149 --GYWIFGSFWCDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKV 226 (239)
Q Consensus 149 --~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~~~~~~~~~~~ 226 (239)
+.|+.+...|++.+|+..++...|++.++.+++||++.|++|+|-++....|..+.+++..|+.+++.++.|+++.+.
T Consensus 93 ~~ai~W~tg~gC~~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~ 172 (363)
T KOG2087|consen 93 KHAIDWQTGLGCPVAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISS 172 (363)
T ss_pred HHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 236667889999999999999999999999999999999999997777777779999999999999999999999666
Q ss_pred ccc
Q psy1006 227 ERH 229 (239)
Q Consensus 227 ~~~ 229 (239)
|..
T Consensus 173 Y~~ 175 (363)
T KOG2087|consen 173 YGA 175 (363)
T ss_pred Ccc
Confidence 654
No 10
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.59 E-value=2.2e-15 Score=125.36 Aligned_cols=120 Identities=23% Similarity=0.281 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHhHHHHHHHHHHHHHHHHH
Q psy1006 97 IIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTASIINL 176 (239)
Q Consensus 97 ~~gv~gN~lvl~~~~~~~~l~~~~~~li~~La~~Dll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l 176 (239)
++|++||..+++++.++|++|+|.++++..+|++|++..+..+|..... .+........|-...+...++...+...+
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~--~~~~~i~~~~Cf~~~~~~~f~~~~qs~~~ 79 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFL--FRDHQITRSECFWQIFFYIFFQCAQSVIM 79 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHH--HhheeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999988877766633 23334567789999999999999999999
Q ss_pred HHHHHHHHHhhhhccccccccchhhHHHHhHHhhHHHHHHHH
Q psy1006 177 CLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICI 218 (239)
Q Consensus 177 ~~isidRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~~~ 218 (239)
++|++||++||+.|++|++..+++..........+.+.....
T Consensus 80 l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~~ 121 (257)
T PF10320_consen 80 LAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFFTV 121 (257)
T ss_pred HHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHHHh
Confidence 999999999999999999998887655555555555555443
No 11
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.37 E-value=7e-12 Score=105.34 Aligned_cols=132 Identities=25% Similarity=0.311 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhH-hHHHHHHHHHHHHHH
Q psy1006 95 LMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWC-DIHSAMDVLLCTASI 173 (239)
Q Consensus 95 i~~~gv~gN~lvl~~~~~~~~l~~~~~~li~~La~~Dll~~~~~~p~~i~~~~~~~~~~~~~~C-~~~~~~~~~~~~~s~ 173 (239)
+.++|++.|.++++.+.|.+++|++.+++..+.|++|.+.++...-........+......... .+.+.....+...+.
T Consensus 3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~~ 82 (274)
T PF10328_consen 3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGMFCYFIGP 82 (274)
T ss_pred eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999999999999999775543333333333333333333 444777888888999
Q ss_pred HHHHHHHHHHHHhhhhccccccccchhhHHHHhHHhhHHHHHHHHHHhhhccc
Q psy1006 174 INLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKV 226 (239)
Q Consensus 174 ~~l~~isidRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~~~~~~~~~~~ 226 (239)
++-++||++|+.||..|.+|++..+.+.++.+++++|++++....+..+.-++
T Consensus 83 ~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C 135 (274)
T PF10328_consen 83 LSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGC 135 (274)
T ss_pred HHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCC
Confidence 99999999999999999999999999999999999999999777666654333
No 12
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.03 E-value=3.1e-09 Score=91.10 Aligned_cols=135 Identities=23% Similarity=0.295 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---c------ccchhhhHhHHHHH
Q psy1006 94 ILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMG---Y------WIFGSFWCDIHSAM 164 (239)
Q Consensus 94 ~i~~~gv~gN~lvl~~~~~~~~l~~~~~~li~~La~~Dll~~~~~~p~~i~~~~~~---~------~~~~~~~C~~~~~~ 164 (239)
++.++|+++|.+-++++.|+.-+.++.|.++..+|++|++..+..++..+...... + .........+...+
T Consensus 5 ~~~~~g~~~N~~h~~VLtrk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l 84 (318)
T PF10324_consen 5 ILSIFGLFINIFHLIVLTRKSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESL 84 (318)
T ss_pred EEeHHHHHHHHHHhhhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHH
Confidence 35678999999999877554443358999999999999999888887776544432 1 11111233455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccc--ccccchhhHHHHhHHhhHHHHHHHHHHhhhccccc
Q psy1006 165 DVLLCTASIINLCLISLDRYWSITQAIDY--LKKRTPGRAMVMITMVWILSAVICIPPLLGWKVER 228 (239)
Q Consensus 165 ~~~~~~~s~~~l~~isidRy~ai~~P~~y--~~~~t~~~~~~~i~~iWl~s~~~~~~~~~~~~~~~ 228 (239)
...+...|.|..++||+.|++++.+|++. ++..+++.+...+.++++.+.++..+.++..+...
T Consensus 85 ~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~ 150 (318)
T PF10324_consen 85 SDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVE 150 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEe
Confidence 78889999999999999999999999875 34667888888999999999999999887666553
No 13
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=98.45 E-value=4.3e-07 Score=76.71 Aligned_cols=129 Identities=16% Similarity=0.300 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHhhccCC----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcc--ccchhhhHhHHHHHHHHH
Q psy1006 97 IIVIVGNMLVIIAIMTEKS----LKNIQNWFIASLAVADFSIGLIIMPFSLANEL--MGY--WIFGSFWCDIHSAMDVLL 168 (239)
Q Consensus 97 ~~gv~gN~lvl~~~~~~~~----l~~~~~~li~~La~~Dll~~~~~~p~~i~~~~--~~~--~~~~~~~C~~~~~~~~~~ 168 (239)
++.++--..+++.+.+.|+ ++++.+-++.+-+++|++..+........... ..+ ...++..-++........
T Consensus 6 ~~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~ 85 (283)
T PF10323_consen 6 IVTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYYF 85 (283)
T ss_pred eehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3444555666666666544 45888999999999999987665443332222 111 112333456666667777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc-ccccccchhhHHHHhHHhhHHHHHHHHHHhhhcc
Q psy1006 169 CTASIINLCLISLDRYWSITQAI-DYLKKRTPGRAMVMITMVWILSAVICIPPLLGWK 225 (239)
Q Consensus 169 ~~~s~~~l~~isidRy~ai~~P~-~y~~~~t~~~~~~~i~~iWl~s~~~~~~~~~~~~ 225 (239)
.+......+.+|++||.||++|. ++++..++.+.+.++++-|+.+.+.++|.++..+
T Consensus 86 ~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~ 143 (283)
T PF10323_consen 86 LYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTD 143 (283)
T ss_pred HHHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeeeccCc
Confidence 88889999999999999999999 7888888899999999999999999999555433
No 14
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=98.45 E-value=8e-06 Score=69.40 Aligned_cols=129 Identities=18% Similarity=0.275 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHhHHHHHHH
Q psy1006 87 IASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDV 166 (239)
Q Consensus 87 ~~~~~~~~i~~~gv~gN~lvl~~~~~~~~l~~~~~~li~~La~~Dll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~~~~~ 166 (239)
....+..+..+++++|-+++++.+.+.|++|++.+-++.-++++|++..+...... .......++..|.+++++..
T Consensus 8 ~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~----~~~~~~~~s~lC~~Qafliq 83 (303)
T PF05462_consen 8 TLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMT----LSPSAGENSFLCQFQAFLIQ 83 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH----hcccCCCCCcchhhHhHHHH
Confidence 44455567789999999999999999999999999999999999998765543221 11223345778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccccchhhHHHHhHHhhHHHHHHHHHHhhh
Q psy1006 167 LLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLG 223 (239)
Q Consensus 167 ~~~~~s~~~l~~isidRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~~~~~~~~ 223 (239)
++..++.+-.++||++=|..+++... ..+|.-+.-.+++|.+.++.++.++..
T Consensus 84 ~f~~as~lWt~~iA~nly~~~~~~~~----~~~k~e~~Y~l~~wGiPli~a~i~l~~ 136 (303)
T PF05462_consen 84 FFMLASFLWTLCIAFNLYLTFVKRYD----ELEKLEKYYHLVCWGIPLIPAVIPLIG 136 (303)
T ss_pred HhhHHHHHHHHHHHHHhhheeEEcCc----cHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999887532 234555667788999999988877653
No 15
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=98.36 E-value=1.6e-05 Score=63.77 Aligned_cols=92 Identities=15% Similarity=0.164 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhhc-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHhHHHHHHHHHHHHHHHHHH
Q psy1006 99 VIVGNMLVIIAIMT-EKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTASIINLC 177 (239)
Q Consensus 99 gv~gN~lvl~~~~~-~~~l~~~~~~li~~La~~Dll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~ 177 (239)
++++=+.+++.+.. .+++|.-.+-++.||.++|++.++..+...+.+...+.-..+...|...+++...+-.++-+...
T Consensus 14 Slls~~~~l~~~~~~~~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~il 93 (201)
T PF11710_consen 14 SLLSSLAVLYLFFFITYRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLWIL 93 (201)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHHHH
Confidence 33333333433333 24445666779999999999998877665555555444555678999999999999999999999
Q ss_pred HHHHHHHHhhhhc
Q psy1006 178 LISLDRYWSITQA 190 (239)
Q Consensus 178 ~isidRy~ai~~P 190 (239)
+||+.-|+.|.+|
T Consensus 94 aIAihT~l~v~~~ 106 (201)
T PF11710_consen 94 AIAIHTFLIVFRP 106 (201)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999999
No 16
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=98.33 E-value=4.4e-05 Score=65.14 Aligned_cols=130 Identities=14% Similarity=0.100 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHhHH
Q psy1006 85 IVIASIFVIILMIIVIVGNMLVIIAIMT---EKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIH 161 (239)
Q Consensus 85 ~~~~~~~~~~i~~~gv~gN~lvl~~~~~---~~~l~~~~~~li~~La~~Dll~~~~~~p~~i~~~~~~~~~~~~~~C~~~ 161 (239)
+.+..++..+.+++|++||..++.+-.+ +++.-+|.+..+.+||+++++...+.................+..++..
T Consensus 6 ~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (303)
T PF05296_consen 6 EIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKII 85 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHH
Confidence 3556777788899999999999876643 4444579999999999999998766555555555555555567789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc-ccc---hhhHHHHhHHhhHHHH
Q psy1006 162 SAMDVLLCTASIINLCLISLDRYWSITQAIDYLK-KRT---PGRAMVMITMVWILSA 214 (239)
Q Consensus 162 ~~~~~~~~~~s~~~l~~isidRy~ai~~P~~y~~-~~t---~~~~~~~i~~iWl~s~ 214 (239)
.++..+....|.|..+++++--++-|+..-+.-- +.. .+....++...++.++
T Consensus 86 ~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~ 142 (303)
T PF05296_consen 86 DFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISF 142 (303)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888877543211 111 1222234556666777
No 17
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=97.97 E-value=0.00023 Score=59.61 Aligned_cols=121 Identities=20% Similarity=0.172 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cc-hhhhHhHHH
Q psy1006 86 VIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYW--IF-GSFWCDIHS 162 (239)
Q Consensus 86 ~~~~~~~~~i~~~gv~gN~lvl~~~~~~~~l~~~~~~li~~La~~Dll~~~~~~p~~i~~~~~~~~--~~-~~~~C~~~~ 162 (239)
.+...+.++...+....|...++.+..+|+.|++-..++--..+.|.+.++...+........... .. .+..=-...
T Consensus 6 ~iv~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~ 85 (273)
T PF10316_consen 6 IIVSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYIG 85 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeehh
Confidence 444555667788889999999998887666556666666678899999988877665554432211 10 111111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhHHHHh
Q psy1006 163 AMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMI 206 (239)
Q Consensus 163 ~~~~~~~~~s~~~l~~isidRy~ai~~P~~y~~~~t~~~~~~~i 206 (239)
......+.........||+||.+|+..|..|++.+++-.....+
T Consensus 86 ~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~k~~~~~I~ 129 (273)
T PF10316_consen 86 WPSSNLGSIRSILALIIALDRVFAVYFPIFYHNYRKKIPNFIII 129 (273)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCccccHHHHH
Confidence 33344556778888999999999999999988776654433333
No 18
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=97.90 E-value=0.0015 Score=56.27 Aligned_cols=128 Identities=13% Similarity=0.041 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH---HHHhhcc----ccchhhhHhH
Q psy1006 88 ASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSL---ANELMGY----WIFGSFWCDI 160 (239)
Q Consensus 88 ~~~~~~~i~~~gv~gN~lvl~~~~~~~~l~~~~~~li~~La~~Dll~~~~~~p~~i---~~~~~~~----~~~~~~~C~~ 160 (239)
...+-.++.++|++.++..++...+++..|.-.-+++....++.++.++..+-... +.+.... ...+...|..
T Consensus 19 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C~~ 98 (324)
T PF10292_consen 19 SLIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRCFI 98 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHHHH
Confidence 34445677888888888888888888888888889999999999988765444332 2222211 2335567988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhHHHHhHHhhHHHHHH
Q psy1006 161 HSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVI 216 (239)
Q Consensus 161 ~~~~~~~~~~~s~~~l~~isidRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~ 216 (239)
......++.....++.+++.+||++|.++.-+|.+. ++.-...+..+.|++++..
T Consensus 99 lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~-~~~~Gi~l~~~qi~is~~~ 153 (324)
T PF10292_consen 99 LRIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKS-GKWLGILLAFFQILISLLI 153 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCC-CccHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999888654 3333334444445555443
No 19
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=97.84 E-value=0.00019 Score=61.38 Aligned_cols=119 Identities=20% Similarity=0.243 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHh------
Q psy1006 86 VIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCD------ 159 (239)
Q Consensus 86 ~~~~~~~~~i~~~gv~gN~lvl~~~~~~~~l~~~~~~li~~La~~Dll~~~~~~p~~i~~~~~~~~~~~~~~C~------ 159 (239)
.+.++.+.+.+++-.+-...+++++.+++..|.+.+-++.-|++.|++.........-.... .|...|.
T Consensus 33 p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i-----~G~vfC~~P~~~~ 107 (313)
T PF10321_consen 33 PILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAI-----FGAVFCSYPRFIY 107 (313)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHh-----cCccccCCchHhh
Confidence 56677777888888888999999999888888999999999999999885443221111111 2444554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhHHHHhHHh
Q psy1006 160 IHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMV 209 (239)
Q Consensus 160 ~~~~~~~~~~~~s~~~l~~isidRy~ai~~P~~y~~~~t~~~~~~~i~~i 209 (239)
+.+.....+-.++......++++|..-+.+|......+..++....+.+.
T Consensus 108 i~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~ 157 (313)
T PF10321_consen 108 IMGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLP 157 (313)
T ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhH
Confidence 33344555677888899999999999999988766676766665544443
No 20
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=97.71 E-value=0.0012 Score=56.04 Aligned_cols=128 Identities=16% Similarity=0.193 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------ccchhhhHh
Q psy1006 91 FVIILMIIVIVGNMLVIIAIMTEK-SLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGY----------WIFGSFWCD 159 (239)
Q Consensus 91 ~~~~i~~~gv~gN~lvl~~~~~~~-~l~~~~~~li~~La~~Dll~~~~~~p~~i~~~~~~~----------~~~~~~~C~ 159 (239)
+..+.+.+|++.|.+.++.+.++. +.-+.-.+++.|-|+.|++.++...-...-..-.+. ..+|...|.
T Consensus 4 ~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q~R~i~~~~~~~~~~~GpC~~~~~~~C~ 83 (292)
T PF10317_consen 4 YHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQPRIIPNGTSIAVISYGPCRYFGPWFCF 83 (292)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEeeecceecCcHHHH
Confidence 345778999999999998776644 434677899999999999997654432221111111 234677898
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhHHHHhHHhhHHHHHHHHHHhhh
Q psy1006 160 IHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLG 223 (239)
Q Consensus 160 ~~~~~~~~~~~~s~~~l~~isidRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~~~~~~~~ 223 (239)
....+...+...+.+.+.+--..||..+.++-. ++++....+.+.+..++...+..++.
T Consensus 84 ~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~-----~~~~~i~~~~l~~~p~~~~~i~~~~~ 142 (292)
T PF10317_consen 84 FCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP-----SRKRIIFICILIYIPSFSMLIFFFFS 142 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888889999999999999999999987632 56677777778888877776655543
No 21
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=97.41 E-value=0.0017 Score=54.37 Aligned_cols=128 Identities=16% Similarity=0.167 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCC--C-CchhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcc-------ccchhhhHhHHH
Q psy1006 94 ILMIIVIVGNMLVIIAIMTEKS--L-KNIQNWFIASLAVADFSIGLIIMPF-SLANELMGY-------WIFGSFWCDIHS 162 (239)
Q Consensus 94 ~i~~~gv~gN~lvl~~~~~~~~--l-~~~~~~li~~La~~Dll~~~~~~p~-~i~~~~~~~-------~~~~~~~C~~~~ 162 (239)
+-++.+++-+..+++++.++|+ . +++.+.+...-++.|+++-+...+. .+....... ....+...++..
T Consensus 6 ~Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (275)
T PF02118_consen 6 IYGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIFY 85 (275)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHHH
Confidence 3466777888888888888777 4 6777888777777787774444332 222220000 122344577777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhHHHHhHHhhHHHHHHHHHHhh
Q psy1006 163 AMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLL 222 (239)
Q Consensus 163 ~~~~~~~~~s~~~l~~isidRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~~~~~~~ 222 (239)
++...+..+.......++++|+-++..|.++.+.-++ ..+..++++.++.+....+.+.
T Consensus 86 ~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~-~~~~~i~~i~~~p~~~~~~~~~ 144 (275)
T PF02118_consen 86 FLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKR-YYWIIIIIIFLLPFSFTWNIFI 144 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHh-hhhhheeeeeehhHHHHHHHHc
Confidence 7888889999999999999999999999998776664 3344555555555554444343
No 22
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=97.04 E-value=0.0013 Score=54.84 Aligned_cols=102 Identities=23% Similarity=0.274 Sum_probs=72.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcccc
Q psy1006 115 SLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTASIINLCLISLDRYWSIT-QAIDY 193 (239)
Q Consensus 115 ~l~~~~~~li~~La~~Dll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~-~P~~y 193 (239)
++.+|.+..+.+||++|.++.+.-....... ..+...+++..||+..|++..+...|+.+.+.+|+ |+||. -|-..
T Consensus 6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~-~~~~~~~~d~gCK~v~Y~~RV~RglSictTCLLSv--fQAItISP~~s 82 (265)
T PF03402_consen 6 HRLKPIDLILIHLALANILVLLSRGIPQTMA-FFGWKFFDDIGCKIVFYIYRVARGLSICTTCLLSV--FQAITISPSNS 82 (265)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhHHHHHH-HhhcccCCCceeeeeeeehHHhchhhHHhhhHHHH--HhhEEEecCCc
Confidence 4457999999999999999976533333322 22223468999999999999999999999999999 55555 23221
Q ss_pred ----ccccchhhHHHHhHHhhHHHHHHHHH
Q psy1006 194 ----LKKRTPGRAMVMITMVWILSAVICIP 219 (239)
Q Consensus 194 ----~~~~t~~~~~~~i~~iWl~s~~~~~~ 219 (239)
-+...++.....+...|++..++...
T Consensus 83 ~w~~lK~k~pk~i~~~~~~~Wilnlli~~~ 112 (265)
T PF03402_consen 83 RWAELKVKAPKYIGPSCLFCWILNLLININ 112 (265)
T ss_pred hhhhhhhhcCCccccHHHHHHHHHHhhhcc
Confidence 12233445555677789998887654
No 23
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=96.93 E-value=0.00044 Score=56.77 Aligned_cols=126 Identities=13% Similarity=0.134 Sum_probs=1.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHhHHHHHHHHHHHHHH
Q psy1006 94 ILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTASI 173 (239)
Q Consensus 94 ~i~~~gv~gN~lvl~~~~~~~~l~~~~~~li~~La~~Dll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~ 173 (239)
+-+.+++++-.+.+..+...|++|+..+....||++++++..+..+.. ......+.....+..|+....+...+..++.
T Consensus 9 vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~-~~~~~~~~~~~~~~~C~~~a~~~hy~~la~f 87 (242)
T PF00002_consen 9 VGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIG-ISQTFSPISTTNHCLCRAIAILLHYFFLASF 87 (242)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHhee-hhhccccccccccccchhhhhHhHHHHHHHH
Confidence 445555666666666666667888877888899999998876543321 1111111111112359999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccccccccchhhHHHHhHHhhHHHHHHHHHHhhhc
Q psy1006 174 INLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGW 224 (239)
Q Consensus 174 ~~l~~isidRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~~~~~~~~~ 224 (239)
.-+.+.+++-|..++++.. ..+++.+...++.|...++.........
T Consensus 88 ~Wm~~~~~~l~~~~~~~~~----~~~~~~~~~~~~gwg~P~~iv~i~~~~~ 134 (242)
T PF00002_consen 88 FWMLVEAFYLYRLLVKVFN----SSRRRFWWYYLIGWGIPALIVVISVAVN 134 (242)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHhheeEEEeec----ccchhhheeeeeeecCcceeeeeeeeec
Confidence 9999999999999988733 1244556667788998888777655543
No 24
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=95.79 E-value=0.46 Score=41.04 Aligned_cols=107 Identities=17% Similarity=0.206 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchh-HHHHHHHHHHHHHHHHHHHHHHHH---HHhh-c----cccchhh
Q psy1006 86 VIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQ-NWFIASLAVADFSIGLIIMPFSLA---NELM-G----YWIFGSF 156 (239)
Q Consensus 86 ~~~~~~~~~i~~~gv~gN~lvl~~~~~~~~l~~~~-~~li~~La~~Dll~~~~~~p~~i~---~~~~-~----~~~~~~~ 156 (239)
.+..++..++.++++++....+-.++++.-..+.+ .+++.+|..+++--..... ..+. ..+. . +..+...
T Consensus 21 ~~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~y~~-~~~~~lyrsf~~~~dpC~i~f~~~ 99 (328)
T PF02117_consen 21 RINQIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQISYAI-IQIWSLYRSFFYSDDPCSILFTSS 99 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCeeeEeecC
Confidence 44455556677778888888887777777666544 6667788888775533322 1111 1111 1 2445666
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q psy1006 157 WCDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDY 193 (239)
Q Consensus 157 ~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~P~~y 193 (239)
.|........++....++.-.++.+||.+|...|-.+
T Consensus 100 eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~ 136 (328)
T PF02117_consen 100 ECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYY 136 (328)
T ss_pred ceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhh
Confidence 7999999999999999999999999999999888544
No 25
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=95.24 E-value=0.0092 Score=50.82 Aligned_cols=110 Identities=14% Similarity=0.182 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------ccccchhhhHhHHH
Q psy1006 94 ILMIIVIVGNMLVIIAIMTEKSLK-NIQNWFIASLAVADFSIGLIIMPFSLANELM----------GYWIFGSFWCDIHS 162 (239)
Q Consensus 94 ~i~~~gv~gN~lvl~~~~~~~~l~-~~~~~li~~La~~Dll~~~~~~p~~i~~~~~----------~~~~~~~~~C~~~~ 162 (239)
+.++++++.|.+.++.+.++.+.+ ..-.+++...|+.|++.+++-....-..+.. +.+..+....+...
T Consensus 7 ~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (307)
T PF10326_consen 7 IGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQILL 86 (307)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheeehh
Confidence 457889999999999887654433 2334566678888888766544322221111 12233444555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhHHH
Q psy1006 163 AMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMV 204 (239)
Q Consensus 163 ~~~~~~~~~s~~~l~~isidRy~ai~~P~~y~~~~t~~~~~~ 204 (239)
.....+...+...++.--+.||.++++|-+. +..+.++...
T Consensus 87 ~~y~~~f~~~~~llaihFiYRY~av~~~~~l-~~f~~~~~~~ 127 (307)
T PF10326_consen 87 AIYCGCFGMSFSLLAIHFIYRYWAVCRPKKL-RYFSGWRFII 127 (307)
T ss_pred hhhhhhHHHHHHHHHhHhhhheeeeccchhh-ccccccceee
Confidence 6666677778888888889999999999764 3334444433
No 26
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=94.95 E-value=0.93 Score=39.59 Aligned_cols=95 Identities=22% Similarity=0.222 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----------chhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1006 121 NWFIASLAVADFSIGLIIMPFSLANELMGYWI-----------FGSFWCDIHSAMDVLLCTASIINLCLISLDRYWSITQ 189 (239)
Q Consensus 121 ~~li~~La~~Dll~~~~~~p~~i~~~~~~~~~-----------~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~ 189 (239)
.-.+..|+++|++.++..+.-..++....+.. .+..+|........+++.++.+-+.+-|+|-|+.+.+
T Consensus 68 ~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~ 147 (405)
T PF02101_consen 68 RRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRR 147 (405)
T ss_pred chhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeec
Confidence 45788999999999777666565555433211 1346899888888889999999999999999988854
Q ss_pred ccccccccchhhHHHHhHHhhHHHHHHHHHHh
Q psy1006 190 AIDYLKKRTPGRAMVMITMVWILSAVICIPPL 221 (239)
Q Consensus 190 P~~y~~~~t~~~~~~~i~~iWl~s~~~~~~~~ 221 (239)
-- .+.+.+.--.++|..+.+++.--+
T Consensus 148 ~a------g~~~~~lYH~~aWgl~~lL~~~Gl 173 (405)
T PF02101_consen 148 SA------GRSTIWLYHMMAWGLPALLCAEGL 173 (405)
T ss_pred cC------CCcchhHHHHHHHHHHHHHHHhcc
Confidence 21 122334455677888888775433
No 27
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=94.33 E-value=0.074 Score=40.48 Aligned_cols=59 Identities=10% Similarity=0.147 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhHHHHhHHhhHHHHHHHHHHhh
Q psy1006 164 MDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLL 222 (239)
Q Consensus 164 ~~~~~~~~s~~~l~~isidRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~~~~~~~ 222 (239)
+..++.....+..++|+++|-.+|.+|++...+++.+|.+.-+..+.++.+..-+.|.+
T Consensus 50 ~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~ 108 (153)
T PF03383_consen 50 FGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYF 108 (153)
T ss_pred eehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcC
Confidence 45566777888889999999999999999666899999999888888777776666665
No 28
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=93.61 E-value=0.74 Score=36.73 Aligned_cols=93 Identities=16% Similarity=0.211 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHhh------c-cccchhhhHhHHHH
Q psy1006 94 ILMIIVIVGNMLVIIAIMTEKSLK---NIQNWFIASLAVADFSIGLIIMPFSLANELM------G-YWIFGSFWCDIHSA 163 (239)
Q Consensus 94 ~i~~~gv~gN~lvl~~~~~~~~l~---~~~~~li~~La~~Dll~~~~~~p~~i~~~~~------~-~~~~~~~~C~~~~~ 163 (239)
++-..+.+.+.+.++.+.++|++. +++-+| +-+..-++.+|+.+...+. + +...+-..|.+..-
T Consensus 49 ~v~~~s~~~s~~L~ifi~~rk~l~~~~ksTIvF------aT~g~fvLtlP~~lf~~wl~~~l~~~~ep~ytI~vCSflk~ 122 (226)
T PF06681_consen 49 IVNTVSWLFSYFLCIFIWRRKNLIRSYKSTIVF------ATFGQFVLTLPLYLFQTWLVFFLWFGHEPQYTIFVCSFLKN 122 (226)
T ss_pred HHHhHHHHHHHHHHHHHhhhHHHHHhhcCeEEE------eeHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeehHHHh
Confidence 345556666776666666665531 222111 1122223445544433322 2 23335567988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q psy1006 164 MDVLLCTASIINLCLISLDRYWSITQAID 192 (239)
Q Consensus 164 ~~~~~~~~s~~~l~~isidRy~ai~~P~~ 192 (239)
+......+.-...+++|++||..|+.-.|
T Consensus 123 f~S~t~s~~~vip~aVAIyRy~~VV~k~r 151 (226)
T PF06681_consen 123 FTSSTTSCAQVIPVAVAIYRYLIVVLKKR 151 (226)
T ss_pred HHHHHhhhhccchhhhhhhhhheeeeccc
Confidence 76666666666667899999999997544
No 29
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=93.57 E-value=3.6 Score=34.49 Aligned_cols=120 Identities=18% Similarity=0.196 Sum_probs=74.2
Q ss_pred HHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHH----HHHHHHHHhhccccchhhhHhHHHHHHHHHHHHHHHHHH
Q psy1006 102 GNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLII----MPFSLANELMGYWIFGSFWCDIHSAMDVLLCTASIINLC 177 (239)
Q Consensus 102 gN~lvl~~~~~~~~l~~~~~~li~~La~~Dll~~~~~----~p~~i~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~ 177 (239)
|-.+++.++..++-++-+...|+..|.++-.+....- .|-.+......+... ...-.+..+...++.++-.+.=.
T Consensus 31 ~~Flv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~~~-s~~f~~~Sy~idf~h~siLfsNl 109 (305)
T PF04789_consen 31 GAFLVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEFVQ-SELFIFMSYLIDFCHYSILFSNL 109 (305)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHHhc-cchhhHHHHHHHHHHHHHHHHHH
Confidence 3334444443333334567788888888877665442 444443333333222 22334556677788899999999
Q ss_pred HHHHHHHHhhhhccccccccchhhHHHHhHHhhHHHHHHHHHHhh
Q psy1006 178 LISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLL 222 (239)
Q Consensus 178 ~isidRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~~~~~~~ 222 (239)
++|++|.....+--+..+.+...-..+-+..+|++++.......-
T Consensus 110 viaIqR~fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~ 154 (305)
T PF04789_consen 110 VIAIQRFFVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMS 154 (305)
T ss_pred HHHHhhheeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999877664323334555667777788899999887765443
No 30
>KOG4193|consensus
Probab=93.31 E-value=1.1 Score=42.05 Aligned_cols=116 Identities=18% Similarity=0.212 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchh-h-hHhHHHHHHHHHHHHHH
Q psy1006 96 MIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGS-F-WCDIHSAMDVLLCTASI 173 (239)
Q Consensus 96 ~~~gv~gN~lvl~~~~~~~~l~~~~~~li~~La~~Dll~~~~~~p~~i~~~~~~~~~~~~-~-~C~~~~~~~~~~~~~s~ 173 (239)
+.+++++=.+.+++..--|++++-.+....||+++=++. -+ . .+.+.|..+. . .|+...++.+++..+..
T Consensus 330 ~~iSlvcL~lti~ty~~~~~l~~~~~~i~~~l~~~L~l~-~l---~----fL~~~~~~~~~~~~C~~~a~llhff~LaaF 401 (610)
T KOG4193|consen 330 CIISLVCLLLTIATYLLFRKLQNDRTKIHINLCLCLFLA-EL---L----FLLGIDRTSTSVVLCIAAAILLHFFFLAAF 401 (610)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-HH---H----HhcccccccCcccccHHHHHHHHHHHHHHH
Confidence 344444444445444444444444467777777772211 11 1 1222333222 2 79999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccccccccchhhHHHHhHHhhHHHHHHHHHHhh
Q psy1006 174 INLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLL 222 (239)
Q Consensus 174 ~~l~~isidRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~~~~~~~ 222 (239)
+-+..+++.=|..++.-++ ...+++......+.|...+++......
T Consensus 402 ~Wm~leg~hl~~~~v~vf~---~~~~~~~l~~~~~gwg~Pavvv~Isa~ 447 (610)
T KOG4193|consen 402 FWMLLEGFHLYLLLVEVFR---SRPRRRKLLYSLYGWGVPAVVVGVSAL 447 (610)
T ss_pred HHHHHHHHHHHHHHHHHhc---cccchHHHHHHHHHhhhhHHHHhheeE
Confidence 9999999999986655433 334455555546889988877665444
No 31
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=93.25 E-value=5.1 Score=34.68 Aligned_cols=143 Identities=13% Similarity=0.166 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHH--h-hc----------cc
Q psy1006 86 VIASIFVIILMIIVIVGNMLVIIAIMTEKS-LKNIQNWFIASLAVADFSIGLIIMPFSLANE--L-MG----------YW 151 (239)
Q Consensus 86 ~~~~~~~~~i~~~gv~gN~lvl~~~~~~~~-l~~~~~~li~~La~~Dll~~~~~~p~~i~~~--~-~~----------~~ 151 (239)
...-....+...+..+.+++.+.++..+++ .|.| ..-+.-+++.-.+.++..+.-.+... . .. ..
T Consensus 9 ~~~~~wi~~~s~ic~~~t~ftv~Tf~id~~rf~yP-erpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~~~~~~~~ 87 (328)
T PF01534_consen 9 EFARIWIGVWSVICFISTLFTVLTFLIDRSRFRYP-ERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGTERILVQD 87 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCc-cchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCCceeEeec
Confidence 333444445566666667776666655444 3333 33344445444444433332222200 0 00 01
Q ss_pred cchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhHHHHhHHhhHHHHHHHHHHhhhccccccCC
Q psy1006 152 IFGSFWCDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVERHDH 231 (239)
Q Consensus 152 ~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~~~~~~~~~~~~~~~~ 231 (239)
..+...|.+...+.+.+..++..=-+.+++.-|++..+.-.+... .++....-+++|.+.++..+..+...+.++++-
T Consensus 88 ~~~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e~i--~~~s~yfH~~aW~iP~~~ti~vL~~~~VdgD~l 165 (328)
T PF01534_consen 88 GLENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSEAI--EKKSSYFHLVAWGIPAVLTIAVLALRKVDGDEL 165 (328)
T ss_pred CCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcchh--hhhcchhhhHHhhhhHHHHHHHHHhcccccccc
Confidence 224567999998888888888888888899999988765543332 355667788999999999998887666666553
No 32
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=92.30 E-value=7.3 Score=34.12 Aligned_cols=112 Identities=21% Similarity=0.244 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHH---HHHHHHHHHHHHHHHhhc--------c-cc
Q psy1006 85 IVIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVAD---FSIGLIIMPFSLANELMG--------Y-WI 152 (239)
Q Consensus 85 ~~~~~~~~~~i~~~gv~gN~lvl~~~~~~~~l~~~~~~li~~La~~D---ll~~~~~~p~~i~~~~~~--------~-~~ 152 (239)
..+..++-.++.+++..-....+.++.+.|..|.-.+++....-..- ++.-+...|........+ . |.
T Consensus 26 ~~~~~i~e~~l~~~~~~~~~~~~~i~~~~r~FH~N~~~l~~~~~~~w~e~~i~k~~i~~y~~~~~~~~~~~~~~~~~~~t 105 (365)
T PF03125_consen 26 YIILLIFELILYIICFYFTFKSCYIILKIRQFHRNLNILFIFILLQWFELIIGKILIIPYQIGIITLGDISIGTYIQWWT 105 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeecCccchhhhhhhc
Confidence 34445555566666666666667777888888876666655543333 333333444443222111 0 11
Q ss_pred c------------hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q psy1006 153 F------------GSFWCDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKK 196 (239)
Q Consensus 153 ~------------~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~P~~y~~~ 196 (239)
. +...-.+.+++....+....+.+.++++||.+|-..--.|.+.
T Consensus 106 ~~~~~m~~v~~~~~~~~l~~~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~ 161 (365)
T PF03125_consen 106 DDPSEMIPVNSFNDSWPLFIGGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEKK 161 (365)
T ss_pred cCcccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1 1112233445555566777899999999999999998888665
No 33
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=92.18 E-value=3.2 Score=35.39 Aligned_cols=129 Identities=16% Similarity=0.193 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCchhHHHHH---HHHHHHHHHHHHHHHHHHHHHhhccccch------hh
Q psy1006 87 IASIFVIILMIIVIVGNMLVIIAIMT-EKSLKNIQNWFIA---SLAVADFSIGLIIMPFSLANELMGYWIFG------SF 156 (239)
Q Consensus 87 ~~~~~~~~i~~~gv~gN~lvl~~~~~-~~~l~~~~~~li~---~La~~Dll~~~~~~p~~i~~~~~~~~~~~------~~ 156 (239)
.....+=++++++++-|.+.++.+.. .+++.+=.++++. ...++|+-.++++-|..+.....|.- .| +.
T Consensus 10 ~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~agy~-~G~l~~~f~i 88 (303)
T PF10327_consen 10 WLINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAGYC-VGFLARYFGI 88 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEEEE-EeehhhcCCC
Confidence 33455568899999999999987654 4555554444443 46679999988888877766554431 11 12
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhHHHHhHHhhHHHHHHH
Q psy1006 157 WCDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVIC 217 (239)
Q Consensus 157 ~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~~ 217 (239)
.+.....+..+......-.++.--+-|+.+|.+..+.++ ..+.......+...+......
T Consensus 89 ~~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~~-l~~~~~~~~~~~~~~~p~~~~ 148 (303)
T PF10327_consen 89 SSHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKHV-LPKWFYIFFYFFCILFPFFIF 148 (303)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-CcHHHHHHHhhHHHHHHHHHH
Confidence 233344445555555666666777889999999876433 333333344444444444433
No 34
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=91.86 E-value=3.9 Score=34.53 Aligned_cols=134 Identities=18% Similarity=0.254 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC-CCCchhHHHHH----HHHHHHHHHHHHHHHHHHHHHhhcc----ccchhhhHh
Q psy1006 89 SIFVIILMIIVIVGNMLVIIAIMTEK-SLKNIQNWFIA----SLAVADFSIGLIIMPFSLANELMGY----WIFGSFWCD 159 (239)
Q Consensus 89 ~~~~~~i~~~gv~gN~lvl~~~~~~~-~l~~~~~~li~----~La~~Dll~~~~~~p~~i~~~~~~~----~~~~~~~C~ 159 (239)
....=++.+++++-|.+..+.+.++. +..+.....+. ...+.|+..+.+..|........+. ...-+.-..
T Consensus 7 ~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~~~ 86 (302)
T PF10318_consen 7 SIVLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVPTP 86 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhcccChH
Confidence 33444677888888998888776643 22223222222 3456788888877775544333222 111123466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhHHHHhHHhhHHHHHHHHHHhhhc
Q psy1006 160 IHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGW 224 (239)
Q Consensus 160 ~~~~~~~~~~~~s~~~l~~isidRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~~~~~~~~~ 224 (239)
+..++..........+.+.+--.||.++...-+ +...++.-....+..++.+.....|..+..
T Consensus 87 ~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~--~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~ 149 (302)
T PF10318_consen 87 IQFYIGVTLLAFVGVSILSLFENRYQIIIRNRS--RSLWKKIRIIFIIFNYIIAFLFFIPIYLSI 149 (302)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccc--cccchhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 667777777777888888889999999986644 122222223344555666666776766643
No 35
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=90.81 E-value=8 Score=31.65 Aligned_cols=47 Identities=17% Similarity=0.243 Sum_probs=40.2
Q ss_pred cchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q psy1006 152 IFGSFWCDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRT 198 (239)
Q Consensus 152 ~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~P~~y~~~~t 198 (239)
..+...+|.......+.+..+.+.-..+++||++|..+.-+|.+.++
T Consensus 79 iI~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~r~ 125 (236)
T PF02175_consen 79 IIDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENTRT 125 (236)
T ss_pred EEchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccCce
Confidence 34566788888999999999999999999999999999888866543
No 36
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=81.58 E-value=33 Score=29.42 Aligned_cols=113 Identities=16% Similarity=0.116 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCC-chhHHHHHHHHHHHHHHHHHHH--HHHHHHHh-------hccccchhh-hHhHHH
Q psy1006 94 ILMIIVIVGNMLVIIAIMTEKSLK-NIQNWFIASLAVADFSIGLIIM--PFSLANEL-------MGYWIFGSF-WCDIHS 162 (239)
Q Consensus 94 ~i~~~gv~gN~lvl~~~~~~~~l~-~~~~~li~~La~~Dll~~~~~~--p~~i~~~~-------~~~~~~~~~-~C~~~~ 162 (239)
+.++++.+.|-+-++.+..+|+.+ -.-.+++..-|+-|++.++.-+ |..+..+- .++|-.... .=....
T Consensus 13 ~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG~F~~~s~l~~~~l 92 (310)
T PF10319_consen 13 IFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDGPFFEKSELGQHLL 92 (310)
T ss_pred HHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCCcCcCcchHHHHHH
Confidence 457888899999999888877765 3446788889999999877643 32222211 111111111 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhHHHHh
Q psy1006 163 AMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMI 206 (239)
Q Consensus 163 ~~~~~~~~~s~~~l~~isidRy~ai~~P~~y~~~~t~~~~~~~i 206 (239)
.....+..+|--.|..==+.||+++++|-.-++.+.+......+
T Consensus 93 s~RCsfIs~sYaIL~~HFvYRYl~l~~~~~~~~~F~p~gl~~s~ 136 (310)
T PF10319_consen 93 SIRCSFISGSYAILHIHFVYRYLVLFNSKFINKYFMPYGLIGSI 136 (310)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhCcHHHHHhhhhHHHHHHH
Confidence 22222333444556666789999999996655555444443333
No 37
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=54.55 E-value=16 Score=26.77 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhhccCCCCc
Q psy1006 99 VIVGNMLVIIAIMTEKSLKN 118 (239)
Q Consensus 99 gv~gN~lvl~~~~~~~~l~~ 118 (239)
|++|=++.++.++|++++|+
T Consensus 76 GvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 76 GVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 44444444444444333343
No 38
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=53.77 E-value=1.4e+02 Score=25.30 Aligned_cols=116 Identities=11% Similarity=0.085 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhhc-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccchhhhHhHHHHHHHHHHHHHHHHH
Q psy1006 99 VIVGNMLVIIAIMT-EKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELM-GYWIFGSFWCDIHSAMDVLLCTASIINL 176 (239)
Q Consensus 99 gv~gN~lvl~~~~~-~~~l~~~~~~li~~La~~Dll~~~~~~p~~i~~~~~-~~~~~~~~~C~~~~~~~~~~~~~s~~~l 176 (239)
+++|.++.+.-+.- -|....++-.++..+.+.++...+=. +++.-. ..|.. ..|.+...+......+-....
T Consensus 4 s~i~~~l~i~Pl~wH~ra~N~~~~~li~Wl~l~nl~~~INa----iIW~~n~~~~~~--~wCDI~~kl~~~~~~g~~~a~ 77 (283)
T PF02076_consen 4 SFIAFVLLIVPLPWHWRARNIGTCSLIFWLFLSNLIYFINA----IIWRDNDINWWP--VWCDISTKLIIGSSVGIPAAS 77 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhh----hhcCCCCCccCc--eeeeehHHHHHHHHHHHHHHH
Confidence 33444444443322 23334688889999999998774322 222111 12222 789888777766665544444
Q ss_pred HHHHHHHHHh-hhhccccc--cccchhhHHHHhHHhhHHHHHHHHHHhh
Q psy1006 177 CLISLDRYWS-ITQAIDYL--KKRTPGRAMVMITMVWILSAVICIPPLL 222 (239)
Q Consensus 177 ~~isidRy~a-i~~P~~y~--~~~t~~~~~~~i~~iWl~s~~~~~~~~~ 222 (239)
. ++-|.++ |..+-+.. +..++|+..+=.++++.+.++......+
T Consensus 78 l--cI~r~L~~I~s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yi 124 (283)
T PF02076_consen 78 L--CIMRRLYRIASARAVSLSRSEKRRRIIIDLLICFGIPILQMALHYI 124 (283)
T ss_pred H--HHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4444433 33332211 1112455555566677777665555444
No 39
>PF09882 DUF2109: Predicted membrane protein (DUF2109); InterPro: IPR019214 This entry is found in various hypothetical archaeal proteins and has no known function.
Probab=47.15 E-value=65 Score=21.46 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1006 96 MIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSL 143 (239)
Q Consensus 96 ~~~gv~gN~lvl~~~~~~~~l~~~~~~li~~La~~Dll~~~~~~p~~i 143 (239)
.+.|+++=...+.++..+.+.++-.++=.+|-|++-++....--|+..
T Consensus 4 ~i~g~Iai~~~iR~~~~~~r~~KL~yLnv~~F~iaalIaL~i~~P~g~ 51 (78)
T PF09882_consen 4 IIIGIIAILMAIRIFLTKSRARKLLYLNVINFAIAALIALYIKSPMGA 51 (78)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHhhhHHHHHHHHHHHHHHHHhCCcHHH
Confidence 455666666777777777777888888888999999888655444433
No 40
>KOG4564|consensus
Probab=47.14 E-value=2.3e+02 Score=25.97 Aligned_cols=131 Identities=12% Similarity=0.059 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------------ccchhhh
Q psy1006 90 IFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGY------------WIFGSFW 157 (239)
Q Consensus 90 ~~~~~i~~~gv~gN~lvl~~~~~~~~l~~~~~~li~~La~~Dll~~~~~~p~~i~~~~~~~------------~~~~~~~ 157 (239)
+++.+-..++++.=++.+.++..-|++|=..|++=.||-++=++-++..+.........+. -..+...
T Consensus 149 ~lytvGyslSl~sL~vAl~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 228 (473)
T KOG4564|consen 149 ILYTVGYSLSLVSLLVALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVG 228 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchh
Confidence 3444555556666566666777788999889999999999888776665544433222211 1245678
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhHHHHhHHhhHHHHHHHHHHhhhc
Q psy1006 158 CDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGW 224 (239)
Q Consensus 158 C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~~~~~~~~~ 224 (239)
||....+...+..+..+-+.+=.+.=|-.++-.... .+++.+.-+++-|-+.++...+-.+..
T Consensus 229 Ck~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~s----er~~~~~y~~iGWG~P~v~v~~Wai~r 291 (473)
T KOG4564|consen 229 CKLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFFS----ERRYFWLYLLIGWGVPAVFVVVWAIVR 291 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeecc----CccHHHHHHHHhhCCcHHHhhhHHhHh
Confidence 999988887787777777777777666555543321 145556667777888888777755544
No 41
>PF15383 TMEM237: Transmembrane protein 237
Probab=46.52 E-value=1.7e+02 Score=24.34 Aligned_cols=45 Identities=11% Similarity=0.159 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhhhccccccccchhhHHHHhHHhhHHHHHHHHHHh
Q psy1006 177 CLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPL 221 (239)
Q Consensus 177 ~~isidRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~~~~~~ 221 (239)
++-++|||-.-.....+.+...+..--.+.+++|+.++++++...
T Consensus 153 ~VSafDr~dl~~~~~~~~r~~~~~~~~~lai~ly~~~lvlsls~~ 197 (253)
T PF15383_consen 153 TVSAFDRYDLAHFSMAHLRGFLKLDPGALAILLYFIALVLSLSCQ 197 (253)
T ss_pred HHhhhhhHHhhcccHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Confidence 445678885443333323333444444566778998888877543
No 42
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=44.00 E-value=2.1e+02 Score=24.56 Aligned_cols=70 Identities=13% Similarity=0.090 Sum_probs=53.5
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhHHHHhHHhhHHHHHHHHHHhhhcc
Q psy1006 155 SFWCDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWK 225 (239)
Q Consensus 155 ~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~~~~~~~~~~ 225 (239)
+..=++..++...+.+.+.+.-+..++-|.+.+..|-++++. .++-.+..+-++.+++++.++|.+...+
T Consensus 100 n~~Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~i-~~~i~~~~~P~i~i~p~~~~f~~~pa~G 169 (307)
T PF10322_consen 100 NHFLKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKKI-CRKIFRIWIPFIFIYPFCFTFPMFPALG 169 (307)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhHH-HHhHHHHHHHHHHHHHHHHHHHccCCcE
Confidence 445567778888899999999999999999999999876444 3344456667778888888887766544
No 43
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=33.17 E-value=58 Score=20.22 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q psy1006 94 ILMIIVIVGNMLVIIAIMT 112 (239)
Q Consensus 94 ~i~~~gv~gN~lvl~~~~~ 112 (239)
++.+--++||++++--..+
T Consensus 10 viVlgvIigNia~LK~sAk 28 (55)
T PF11446_consen 10 VIVLGVIIGNIAALKYSAK 28 (55)
T ss_pred HHHHHHHHhHHHHHHHhcc
Confidence 4445557899998865543
No 44
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=31.87 E-value=3.3e+02 Score=23.30 Aligned_cols=66 Identities=18% Similarity=0.196 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccccchhhhHhH
Q psy1006 92 VIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAV-ADFSIGLIIMPFSLANELMGYWIFGSFWCDI 160 (239)
Q Consensus 92 ~~~i~~~gv~gN~lvl~~~~~~~~l~~~~~~li~~La~-~Dll~~~~~~p~~i~~~~~~~~~~~~~~C~~ 160 (239)
++.+.++|++.|.+..+.+.+.++ +..|.=-+.|-+ +|++..+..+.-.+...+.+ |..-+..+.+
T Consensus 127 ml~va~~GL~vN~~~a~ll~~~~~--~~lN~r~a~LHvl~D~Lgsv~vIia~i~i~~~~-w~~~Dpi~si 193 (296)
T COG1230 127 MLVVAIIGLVVNLVSALLLHKGHE--ENLNMRGAYLHVLGDALGSVGVIIAAIVIRFTG-WSWLDPILSI 193 (296)
T ss_pred hHHHHHHHHHHHHHHHHHhhCCCc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccchHHHH
Confidence 456788899999999998877622 234444444544 78888766665555555554 3334444433
No 45
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=31.06 E-value=1.3e+02 Score=28.97 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-------ccccchhhhHhHHHHHHHHHHHHH
Q psy1006 121 NWFIASLAVADFSIGLIIMPFSLANELM-------GYWIFGSFWCDIHSAMDVLLCTAS 172 (239)
Q Consensus 121 ~~li~~La~~Dll~~~~~~p~~i~~~~~-------~~~~~~~~~C~~~~~~~~~~~~~s 172 (239)
-+|++--+.+|+++ ++++|..+..+.. -.|.-....|.....+..++.|..
T Consensus 77 ~~~~~~~~~~d~~~-~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~e 134 (697)
T PF09726_consen 77 VFFVCIAFTSDLIC-LFFIPVHWLFFAASTYVWVQYVWHTDRGICLPTVSLWILFVYVE 134 (697)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHhhhccCCccHHHHHHHHHHHHHH
Confidence 34455555588877 7778876654432 125555667776666666555543
No 46
>KOG1292|consensus
Probab=28.16 E-value=4.8e+02 Score=24.06 Aligned_cols=29 Identities=14% Similarity=0.340 Sum_probs=22.0
Q ss_pred ccccchhhHHHHhHHhhHHHHHHHHHHhh
Q psy1006 194 LKKRTPGRAMVMITMVWILSAVICIPPLL 222 (239)
Q Consensus 194 ~~~~t~~~~~~~i~~iWl~s~~~~~~~~~ 222 (239)
++.+.+-...+.+.++|+++.++..--..
T Consensus 201 ~~if~~f~vll~i~ivW~~~~iLT~tgay 229 (510)
T KOG1292|consen 201 IQIFSRFPVLLAIAIVWLYCFILTITGAY 229 (510)
T ss_pred cchHhhccHHHHHHHHHHHHHHHHhcccc
Confidence 45666777778889999999998865443
No 47
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=24.86 E-value=1.2e+02 Score=21.69 Aligned_cols=28 Identities=11% Similarity=0.197 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCC
Q psy1006 89 SIFVIILMIIVIVGNMLVIIAIMTEKSL 116 (239)
Q Consensus 89 ~~~~~~i~~~gv~gN~lvl~~~~~~~~l 116 (239)
..++.++.++.++.|++......|+++.
T Consensus 4 l~il~llLll~l~asl~~wr~~~rq~k~ 31 (107)
T PF15330_consen 4 LGILALLLLLSLAASLLAWRMKQRQKKA 31 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3445566677788888887766555544
No 48
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=24.48 E-value=50 Score=24.89 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCc
Q psy1006 86 VIASIFVIILMIIVIVGNMLVIIAIMTEKSLKN 118 (239)
Q Consensus 86 ~~~~~~~~~i~~~gv~gN~lvl~~~~~~~~l~~ 118 (239)
.+.++++.+++++|+++-+.+.+..+.++...+
T Consensus 62 AIaGIVfgiVfimgvva~i~icvCmc~kn~rgs 94 (155)
T PF10873_consen 62 AIAGIVFGIVFIMGVVAGIAICVCMCMKNSRGS 94 (155)
T ss_pred eeeeeehhhHHHHHHHHHHHHHHhhhhhcCCCc
Confidence 456677788899999998888887776665433
No 49
>KOG3609|consensus
Probab=23.86 E-value=7e+02 Score=24.62 Aligned_cols=78 Identities=12% Similarity=-0.004 Sum_probs=42.6
Q ss_pred HHHHHHhhccccchhhhHhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhHHHHhHHhhHHHHHHHHH
Q psy1006 141 FSLANELMGYWIFGSFWCDI-HSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIP 219 (239)
Q Consensus 141 ~~i~~~~~~~~~~~~~~C~~-~~~~~~~~~~~s~~~l~~isidRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~~~~ 219 (239)
+.+++.+......|..+|+- ..|+.+...+...+.++.++.-|..- .+....+-.+ ....=..++.|++++++.=.
T Consensus 326 ~~l~yllap~S~~G~~~r~PfmKFi~H~~Sy~~FL~LL~l~s~~~~~--~~~~~~~g~~-p~~vE~li~~wV~G~iw~E~ 402 (822)
T KOG3609|consen 326 PSLVYLLAPMSRKGTTMRKPFMKFIAHITSYLVFLILLILASLIGFY--FAWTDSRGVT-PQALEILIYLWVMGLIWEEI 402 (822)
T ss_pred HHHHHHhCCCCcccchhhchHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhhcccCCC-CcHHHHHHHHHHHHHHHHHH
Confidence 44455555556667777764 44666666666666655555544332 2221122222 23333567789988887644
Q ss_pred Hh
Q psy1006 220 PL 221 (239)
Q Consensus 220 ~~ 221 (239)
.-
T Consensus 403 k~ 404 (822)
T KOG3609|consen 403 KE 404 (822)
T ss_pred HH
Confidence 33
Done!