RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1006
(239 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 118 bits (298), Expect = 1e-32
Identities = 44/122 (36%), Positives = 69/122 (56%)
Query: 108 IAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVL 167
+ I+ K L+ N F+ +LAVAD L + P++L + G W FG C + + V+
Sbjct: 1 LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVV 60
Query: 168 LCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVE 227
ASI+ L IS+DRY +I + Y + RTP RA V+I +VW+L+ ++ +PPLL +
Sbjct: 61 NGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLR 120
Query: 228 RH 229
Sbjct: 121 TV 122
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 63.9 bits (155), Expect = 7e-12
Identities = 46/130 (35%), Positives = 76/130 (58%), Gaps = 3/130 (2%)
Query: 90 IFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMG 149
IF II+ I+ + GN +I+ I+ K +K I + +I +LA++D I +I PF + NE
Sbjct: 103 IFYIIIFILGLFGNAAIIM-ILFCKKIKTITDIYIFNLAISDL-IFVIDFPFIIYNEF-D 159
Query: 150 YWIFGSFWCDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMV 209
WIFG F C + SA + +++ + L+S+DRY++I I + K RT +++ +
Sbjct: 160 QWIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIIS 219
Query: 210 WILSAVICIP 219
WILS +I P
Sbjct: 220 WILSLIITSP 229
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 63.3 bits (154), Expect = 1e-11
Identities = 43/187 (22%), Positives = 89/187 (47%), Gaps = 8/187 (4%)
Query: 47 NYSILLNGLDNMTFNETLLNNTYISF---DTLYPSGYSLTHIVIASIFVIILMIIVIVGN 103
NY++ +N T + +TY D GY ++ ++ I +VGN
Sbjct: 2 NYTLTINTTIENTTDYY--YDTYYDEDYADCDLNIGYDTNSTILIVVYSTIF-FFGLVGN 58
Query: 104 MLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSA 163
++VI ++T+ +K + ++ +LAV+D + ++ +PF + ++ W FG F C I S
Sbjct: 59 IIVIY-VLTKTKIKTPMDIYLLNLAVSDL-LFVMTLPFQIYYYILFQWSFGEFACKIVSG 116
Query: 164 MDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLG 223
+ + S+ + ++S+DRY +I + K T ++ ++WI+S + P L
Sbjct: 117 LYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFV 176
Query: 224 WKVERHD 230
+ ++
Sbjct: 177 YTTKKDH 183
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 46.4 bits (110), Expect = 4e-06
Identities = 34/142 (23%), Positives = 81/142 (57%), Gaps = 4/142 (2%)
Query: 90 IFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMG 149
+F I+L I ++GN+LVI ++ ++ + + + ++ ++A++D + + PF + N+L
Sbjct: 33 VFYILLFIFGLIGNVLVIAVLIVKRFMFVV-DVYLFNIAMSDLML-VFSFPFIIHNDL-N 89
Query: 150 YWIFGSFWCDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMV 209
WIFG F C + + + +++ + LIS+DRY + A +K ++ ++++
Sbjct: 90 EWIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATK-IKNKSISLSVLLSVAA 148
Query: 210 WILSAVICIPPLLGWKVERHDH 231
W+ S ++ +P ++ + V+ D+
Sbjct: 149 WVCSVILSMPAMVLYYVDNTDN 170
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor
Srx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srx is part of the Srg
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 275
Score = 34.1 bits (79), Expect = 0.044
Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 1/131 (0%)
Query: 93 IILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWI 152
++ + I+ N L+ + SLKN A+ A+++ I I + + + L+
Sbjct: 1 FLISLFGIILNWLIFYIFLKLPSLKNSFGILCANKAISNAIICTIFLFYVVPMTLLDLSF 60
Query: 153 FGSFWCDIHSAMDVLLC-TASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWI 211
+ +L S + LISL+R+ ++ Y K + ++IT +WI
Sbjct: 61 LPELLNSHIGGLILLGLYEISPLTHLLISLNRFCAVFFPFKYKKIFSIKNTKIIITFIWI 120
Query: 212 LSAVICIPPLL 222
++ +I
Sbjct: 121 IAIIISTLFYF 131
>gnl|CDD|227412 COG5080, YIP1, Rab GTPase interacting factor, Golgi membrane
protein [Intracellular trafficking and secretion].
Length = 227
Score = 31.7 bits (72), Expect = 0.23
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 46 YNYSILLNGLDNMTFNETLLNNTYISF-DTLYPSGYSLTHIVIASIFVIILMIIVIVGNM 104
Y Y I L G ++ LL + ISF T+ GYSL +V S+ IIL I+I+G +
Sbjct: 120 YIYGISLFGTLSLHLLLRLLGHKNISFFSTISILGYSLLPLVFNSLVSIILGRILILGYV 179
Query: 105 LVIIAIM 111
+V + ++
Sbjct: 180 VVALFLI 186
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 29.5 bits (67), Expect = 1.5
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 96 MIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVAD 131
+I I GN+++II +K L++ ++ I +AD
Sbjct: 1 SVIGIFGNVIMIILTFKKKKLRSKCSYLICVQCLAD 36
>gnl|CDD|218827 pfam05960, DUF885, Bacterial protein of unknown function (DUF885).
This family consists of several hypothetical bacterial
proteins several of which are putative membrane
proteins.
Length = 539
Score = 29.6 bits (67), Expect = 1.7
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 185 WSITQAIDYLKKRT---PGRAMVMIT--MVW 210
W+ QAIDYL + T G A + +VW
Sbjct: 452 WTREQAIDYLVENTGLSEGEAEAEVDRYIVW 482
>gnl|CDD|222372 pfam13777, DUF4173, Domain of unknown function (DUF4173). This
domain of unknown function contains multiple predicted
transmembrane domains.
Length = 188
Score = 27.9 bits (63), Expect = 3.6
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 75 LYPSGYSLTHIVIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVA 130
LY Y LT+ I V+ M+++ +G +LV+ I KS + + +A+ V
Sbjct: 90 LYIDAYGLTY---LRILVLAFMLLLAIGLLLVLAKIFRGKSNRWLLRRNLAAGVVV 142
>gnl|CDD|137485 PRK09713, focB, putative formate transporter; Provisional.
Length = 282
Score = 28.1 bits (62), Expect = 3.6
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 69 YISFDTLYPSGYSLTHIVIASIFVIILMIIVIVGNMLVIIAIMT----EKSLKNIQNWFI 124
Y+S PS +LTH+V F + +++ + G L ++MT + + + + W I
Sbjct: 52 YLSVIADAPSSQALTHLVGGLCFTLGFILLAVCGTSLFTSSVMTVMAKSRGVISWRTWLI 111
Query: 125 ASLAVA 130
+L VA
Sbjct: 112 NALLVA 117
>gnl|CDD|217102 pfam02554, CstA, Carbon starvation protein CstA. This family
consists of Carbon starvation protein CstA a predicted
membrane protein. It has been suggested that CstA is
involved in peptide utilisation.
Length = 382
Score = 28.3 bits (64), Expect = 4.3
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 22/92 (23%)
Query: 86 VIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLAN 145
V+ IF++ ++I+V+ LV++ N AS F++ + I P ++
Sbjct: 130 VLFLIFILFILILVLAVFALVVV------------NALAASPWGV-FTVAMTI-PIAI-- 173
Query: 146 ELMGYWIF---GSFWCDIHSAMDVLLCTASII 174
LMG + + G S + V+L +I+
Sbjct: 174 -LMGIYRYKRPGRVL--EASVIGVVLLLLAIV 202
>gnl|CDD|216374 pfam01226, Form_Nir_trans, Formate/nitrite transporter.
Length = 249
Score = 27.5 bits (62), Expect = 6.7
Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 75 LYPSGYSLTHIVIASIFVIILMIIVIVG-------NMLVIIAIMTEK-SLKN-IQNWFI 124
L +G L ++ +F + L+++V+ G + + +A++ +K SL + ++NW +
Sbjct: 48 LPDAGPGLAKLLGGLVFPLGLILVVLGGAELFTGNTLTLTLAVLRKKISLGDLLRNWGV 106
>gnl|CDD|107329 cd06334, PBP1_ABC_ligand_binding_like_1, Type I periplasmic
ligand-binding domain of uncharacterized ABC (ATPase
Binding Cassette)-type active transport systems that
are predicted to be involved in transport of amino
acids, peptides, or inorganic ions. This subgroup
includes the type I periplasmic ligand-binding domain
of uncharacterized ABC (ATPase Binding Cassette)-type
active transport systems that are predicted to be
involved in transport of amino acids, peptides, or
inorganic ions. Members of this group are
sequence-similar to members of the family of ABC-type
hydrophobic amino acid transporters, such as
leucine-isoleucine-valine-binding protein (LIVBP);
however their ligand specificity has not been
determined experimentally.
Length = 351
Score = 27.2 bits (61), Expect = 7.2
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 13 TGALSASGTDVHRTANDILNYLNDN 37
TG + G D Y+N++
Sbjct: 9 TGPTAFVGIPYAAGFADYFKYINED 33
>gnl|CDD|224877 COG1966, CstA, Carbon starvation protein, predicted membrane
protein [Signal transduction mechanisms].
Length = 575
Score = 27.3 bits (61), Expect = 8.1
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 86 VIASIFVIILMIIVIVGNMLVIIAIMTE 113
V + +IL+I+V VI ++
Sbjct: 130 VFFLLLALILLILVGAVFAAVIAKLLAN 157
>gnl|CDD|225598 COG3056, COG3056, Uncharacterized lipoprotein [Cell envelope
biogenesis, outer membrane].
Length = 204
Score = 26.7 bits (59), Expect = 8.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 10 YNETGALSASGTDVHRTANDILN 32
YN GA SAS ++ N +LN
Sbjct: 161 YNVEGAFSASNDEIADVLNSVLN 183
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.138 0.426
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,112,210
Number of extensions: 1165980
Number of successful extensions: 2955
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2861
Number of HSP's successfully gapped: 255
Length of query: 239
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 145
Effective length of database: 6,768,326
Effective search space: 981407270
Effective search space used: 981407270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.8 bits)