RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1006
(239 letters)
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 230 bits (587), Expect = 1e-73
Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 5/180 (2%)
Query: 65 LNNTYISFDTL--YPSGYSLTHIVIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNW 122
++++ S D S Y +V + L ++ I+GN+LV+++I + L+ + N+
Sbjct: 1 MDDSTDSSDNSLALTSPYKTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNY 60
Query: 123 FIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTASIINLCLISLD 182
F+ SLA AD IG+ M ++GYW G CD+ A+D ++ AS++NL +IS D
Sbjct: 61 FLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFD 120
Query: 183 RYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKV---ERHDHQQYPKCEF 239
RY+ +T+ + Y KRT A +MI W+LS ++ P +L W+ R +F
Sbjct: 121 RYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGECYIQF 180
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 228 bits (582), Expect = 1e-72
Identities = 65/200 (32%), Positives = 104/200 (52%), Gaps = 7/200 (3%)
Query: 46 YNYSILLNGLDNMTFNETLLNNTYISFDTLYPSGYSLTHIVIASIFVIILMIIVIVGNML 105
Y + N + N ++ D +V I + ++++ ++ GN+L
Sbjct: 2 YKDDDAMGQPGNGSAFLLAPNRSHAP-DHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVL 60
Query: 106 VIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMD 165
VI AI + L+ + N+FI SLA AD +GL ++PF A+ LM W FG+FWC+ +++D
Sbjct: 61 VITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSID 120
Query: 166 VLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPL-LGW 224
VL TASI LC+I++DRY++IT Y T +A V+I MVWI+S + P+ + W
Sbjct: 121 VLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHW 180
Query: 225 KVERHDHQ-----QYPKCEF 239
H + C+F
Sbjct: 181 YRATHQEAINCYAEETCCDF 200
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 221 bits (565), Expect = 1e-70
Identities = 47/165 (28%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 78 SGYSLTHIVIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLI 137
+ + ++ + + + ++ + N+LV+ A+ +E+ L + N +I SL+VAD +G +
Sbjct: 1 TTMASPQLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAV 60
Query: 138 IMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKR 197
+MP ++ LM W G C +MD + TASI ++ ++ +DRY S+ Q + YLK R
Sbjct: 61 VMPMNILYLLMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYR 120
Query: 198 TPGRAMVMITMVWILSAVICIPPLLGWKVERHDHQQYP---KCEF 239
T RA I W LS + IP L + + + +F
Sbjct: 121 TKTRASATILGAWFLSFLWVIPILGWNHFMQQTSVRREDKCETDF 165
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 211 bits (539), Expect = 2e-66
Identities = 53/187 (28%), Positives = 96/187 (51%), Gaps = 10/187 (5%)
Query: 57 NMTFNETLLNNTYISFDTLYPSGYSLTHIVIASIFVIILMIIVIVGNMLVIIAIMTEKSL 116
+++ + LN T + ++ ++ L++ ++ GN LV +A++ E++L
Sbjct: 12 SLSQLSSHLNYTCGAENS--TGASQARPHAYYALSYCALILAIVFGNGLVCMAVLKERAL 69
Query: 117 KNIQNWFIASLAVADFSIGLIIMPFSLANELMG-YWIFGSFWCDIHSAMDVLLCTASIIN 175
+ N+ + SLAVAD + ++MP+ + E+ G W F CD+ +DV++CTASI N
Sbjct: 70 QTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWN 129
Query: 176 LCLISLDRYWSITQAIDY---LKKRTPGRAMVMITMVWILSAVICIPPLLGWKVERHDHQ 232
LC IS+DRY ++ + Y + + R +MIT VW+L+ + P L G+ +
Sbjct: 130 LCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGF----NTTG 185
Query: 233 QYPKCEF 239
C
Sbjct: 186 DPTVCSI 192
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 211 bits (538), Expect = 4e-66
Identities = 43/158 (27%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
Query: 80 YSLTHIVIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIM 139
+ V ++ + I ++ I+GN+LV A+ +L+N+ N+F+ SLA AD ++G++ +
Sbjct: 17 PIMGSSVYITVELAI-AVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAI 75
Query: 140 PFSLANELMGYWIFGSFWCDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTP 199
PF++ + + C + ++L +SI +L I++DRY +I + Y T
Sbjct: 76 PFAIT--ISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTG 133
Query: 200 GRAMVMITMVWILSAVICIPPLLGWKVERHDHQQYPKC 237
RA +I + W+LS I + P+LGW +
Sbjct: 134 TRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHS 171
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 210 bits (537), Expect = 1e-65
Identities = 63/203 (31%), Positives = 100/203 (49%), Gaps = 11/203 (5%)
Query: 48 YSILLNGLDNMTFNETLLNNTYISFDTLY-----PSGYSLTHIVIASIFVIILMIIVIVG 102
+ L + N T +V I + ++++ ++ G
Sbjct: 140 WDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYAADEVWVVGMGIVMSLIVLAIVFG 199
Query: 103 NMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHS 162
N+LVI AI + L+ + N+FI SLA AD +GL ++PF A+ L W FG+FWC+ +
Sbjct: 200 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWT 259
Query: 163 AMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPL- 221
++DVL TASI LC+I++DRY++IT Y T +A V+I MVWI+S + P+
Sbjct: 260 SIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQ 319
Query: 222 LGWKVERHDHQ-----QYPKCEF 239
+ W H + C+F
Sbjct: 320 MHWYRATHQEAINCYAEETCCDF 342
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 208 bits (530), Expect = 2e-65
Identities = 41/184 (22%), Positives = 85/184 (46%), Gaps = 2/184 (1%)
Query: 55 LDNMTFNETLLNNTYISFDTLYPSGYSLTHIVIASIFVIILMIIVIVGNMLVIIAIMTEK 114
+ + + + + + + + + ++ I+GN+LV A+
Sbjct: 1 MKTIIALSYIFCLVFADYKDDDDGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNS 60
Query: 115 SLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTASII 174
+L+N+ N+F+ SLA AD ++G++ +PF++ + + C + ++L +SI
Sbjct: 61 NLQNVTNYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVLTQSSIF 118
Query: 175 NLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVERHDHQQY 234
+L I++DRY +I + Y T RA +I + W+LS I + P+LGW +
Sbjct: 119 SLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGK 178
Query: 235 PKCE 238
+
Sbjct: 179 NHSQ 182
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 194 bits (496), Expect = 1e-61
Identities = 56/164 (34%), Positives = 95/164 (57%), Gaps = 2/164 (1%)
Query: 77 PSGYSLTHIVIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGL 136
S S+ + +++++++ GN+LVI AI + + L+ + N FI SLA AD +GL
Sbjct: 3 AELLSQQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGL 62
Query: 137 IIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKK 196
+++PF + G W++GSF C++ +++DVL TASI LC+I++DRY +IT Y
Sbjct: 63 LVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSL 122
Query: 197 RTPGRAMVMITMVWILSAVICIPPLL--GWKVERHDHQQYPKCE 238
T RA V+I VW +SA++ P++ W+ E + +
Sbjct: 123 MTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDP 166
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 170 bits (432), Expect = 3e-50
Identities = 35/195 (17%), Positives = 77/195 (39%), Gaps = 6/195 (3%)
Query: 31 LNYLNDNPSLSNSSLYNYSILLNGLDNMTFNETLLNNTYISFDTLYPSGYSLTHIVIASI 90
L + S + + ++ N N T L S I + S+
Sbjct: 13 LVFAGAPGPTSVPLVKAHRSSVSDYVNYDIIVRHYNYT----GKLNISADKENSIKLTSV 68
Query: 91 FVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGY 150
I++ +I+ N+ V++ I K +FI +LA++D G+ L +
Sbjct: 69 VFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSGATT- 127
Query: 151 WIFGSFWCDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVW 210
+ + + +AS+ +L I+++RY ++ + + R ++I+ W
Sbjct: 128 YKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITMLK-MKLHNGSNNFRLFLLISACW 186
Query: 211 ILSAVICIPPLLGWK 225
++S ++ P++GW
Sbjct: 187 VISLILGGLPIMGWN 201
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 134 bits (339), Expect = 3e-37
Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 2/150 (1%)
Query: 76 YPSGYSLTHIVIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIG 135
+ + + IF+ I II GN +VI KSL+ N FI +LA +DF+
Sbjct: 26 FDQVPDAVYYSLG-IFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFS 84
Query: 136 LII-MPFSLANELMGYWIFGSFWCDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYL 194
L+ P + + WIFG C ++ + + SI+ + +IS+DRY I + +
Sbjct: 85 LVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAAS 144
Query: 195 KKRTPGRAMVMITMVWILSAVICIPPLLGW 224
KK + RA +MI VW+ S + I P+ GW
Sbjct: 145 KKMSHRRAFIMIIFVWLWSVLWAIGPIFGW 174
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 126 bits (318), Expect = 6e-35
Identities = 36/177 (20%), Positives = 78/177 (44%), Gaps = 6/177 (3%)
Query: 52 LNGLDNMTFNETLLNNTYISFDTL----YPSGYSLTHIVIASIFVIILMIIVIVGNMLVI 107
+NG + F N T + Y ++A ++ +L+++ N L +
Sbjct: 2 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLA-AYMFLLIMLGFPINFLTL 60
Query: 108 IAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVL 167
+ K L+ N+ + +LAVAD + +L L GY++FG C++ L
Sbjct: 61 YVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATL 120
Query: 168 LCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGW 224
++ +L +++++RY + + + + A++ + W+++ PPL+GW
Sbjct: 121 GGEIALWSLVVLAIERYVVVCKPMSNFRFGEN-HAIMGVAFTWVMALACAAPPLVGW 176
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 128 bits (322), Expect = 8e-35
Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 2/163 (1%)
Query: 77 PSGYSLTHIVIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGL 136
S +T I I +++ I+ ++ + GN LV+ I+ +K N +I +LA+AD +
Sbjct: 10 GSPSMVTAITIMALYSIV-CVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADA-LAT 67
Query: 137 IIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKK 196
+PF N LMG W FG+ C I ++D SI LC +S+DRY ++ + L
Sbjct: 68 STLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDF 127
Query: 197 RTPGRAMVMITMVWILSAVICIPPLLGWKVERHDHQQYPKCEF 239
RTP A ++ WILS+ I +P + + F
Sbjct: 128 RTPRNAKIVNVCNWILSSAIGLPVMFMATTKYRQGSIDCTLTF 170
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 123 bits (311), Expect = 8e-34
Identities = 33/181 (18%), Positives = 81/181 (44%), Gaps = 3/181 (1%)
Query: 55 LDNMTFNETLLNNTYISFDTLYPSGYSLTHIVIASIFVIILMIIV-IVGNMLVIIAIMTE 113
+DN+ ++ L+ + + ++ ++++ +VGN++V+ I+
Sbjct: 1 MDNVLPVDSDLSPNISTNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAH 60
Query: 114 KSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTASI 173
K ++ + N+F+ +LA A+ S+ + + W +G F+C H+ + ASI
Sbjct: 61 KRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASI 120
Query: 174 INLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVERHDHQQ 233
++ ++ DRY +I + + + V+I ++W+L+ ++ P E +
Sbjct: 121 YSMTAVAFDRYMAIIHPLQ--PRLSATATKVVICVIWVLALLLAFPQGYYSTTETMPSRV 178
Query: 234 Y 234
Sbjct: 179 V 179
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 121 bits (306), Expect = 1e-32
Identities = 51/223 (22%), Positives = 94/223 (42%), Gaps = 9/223 (4%)
Query: 17 SASGTDVHRTANDILNYLNDNPSLSNSSLYNYSILLNGLDNMTFNETLLNNTYISFDTLY 76
S D + ++ ++D L+N + T N +
Sbjct: 65 SPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYL----GAFL 120
Query: 77 PSGYSLTHIVIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGL 136
P G + I +++ + + ++GN LV+ I+ +K N +I +LA+AD + L
Sbjct: 121 PLGL---KVTIVGLYLAV-CVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLV-L 175
Query: 137 IIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKK 196
+ +PF + L+G+W FG+ C A+D S L +S+DRY +I I L
Sbjct: 176 LTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDV 235
Query: 197 RTPGRAMVMITMVWILSAVICIPPLLGWKVERHDHQQYPKCEF 239
RT +A + +W L++V+ +P + + D + E
Sbjct: 236 RTSSKAQAVNVAIWALASVVGVPVAIMGSAQVEDEEIECLVEI 278
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 113 bits (283), Expect = 4e-29
Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 8/203 (3%)
Query: 32 NYLNDNPSLSNSSLYNYSILLNGLDNMTFNETLLNNTYISFDTLYPSGYSLTHIVIASIF 91
+Y +D+ + + + Y+ DN T + + + I + +I+
Sbjct: 1 DYKDDDDAGAPEGISIYT-----SDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPTIY 55
Query: 92 VIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYW 151
II + IVGN LVI+ + +K L+++ + + L+VAD +I +PF + + W
Sbjct: 56 SII-FLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLPFWAVDAVAN-W 112
Query: 152 IFGSFWCDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWI 211
FG+F C + + +S+ L ISLDRY +I A + + R V+ VWI
Sbjct: 113 YFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWI 172
Query: 212 LSAVICIPPLLGWKVERHDHQQY 234
+ ++ IP + V D +
Sbjct: 173 PALLLTIPDFIFANVSEADDRYI 195
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein;
NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Length = 32
Score = 61.7 bits (150), Expect = 2e-13
Identities = 24/32 (75%), Positives = 28/32 (87%)
Query: 170 TASIINLCLISLDRYWSITQAIDYLKKRTPGR 201
T+SI++LC ISLDRYWSITQAI+Y KRTP R
Sbjct: 1 TSSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 1e-04
Identities = 43/290 (14%), Positives = 70/290 (24%), Gaps = 124/290 (42%)
Query: 12 ETGALSASGTDVHRTANDILNYLNDNPSLSNSSLYNY----------------SILLN-- 53
E L G D+H A +L + + + NY S L
Sbjct: 92 ENCYLE--GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 54 --------------GLDNMTFNETLLNNTYISFDTLYPSGYSLTHIVIASIFVIILMIIV 99
G + F E L + Y T Y V L I
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEE--LRDLY---QT-YHV------------LVGDL--IK 189
Query: 100 IVGNMLVIIAIMTEKSLK------NIQNW-----------FIASLAVADFS---IGLIIM 139
L + T + K NI W ++ S+ + S IG+I
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI---SCPLIGVI-- 244
Query: 140 PFSLANELMGYWIF--------GSFWCDIHSAMDVLLCTASIINLCLISLDRYWS--ITQ 189
LA+ Y + G + A + ++ I+ W
Sbjct: 245 --QLAH----YVVTAKLLGFTPGELRSYLKGA---TGHSQGLVTAVAIAETDSWESFFVS 295
Query: 190 AIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVERHDHQQYPKCEF 239
+ + +I G + ++ YP
Sbjct: 296 VRKAIT-----------VLFFI-----------GVRC----YEAYPNTSL 319
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 1.00
Identities = 28/214 (13%), Positives = 60/214 (28%), Gaps = 83/214 (38%)
Query: 46 YNYSILLNGLDNMTFNETLLNNTYISF-DTLYPSGYSLT--HIVIASIFVII---LM--- 96
NY L++ + +++ YI D LY ++ ++ + L+
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 97 ---IIVIVGNMLVIIAIM--TEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYW 151
++I G + + K+ W +A + + M F + +W
Sbjct: 149 PAKNVLIDG--------VLGSGKT------W-VALDVCLSYKV-QCKMDFKI------FW 186
Query: 152 I-FGSFWCDIHSAMDVL-----LCTASIINL----------------------------- 176
+ + C +S VL L N
Sbjct: 187 LNLKN--C--NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 177 ---CLISLDRYWSITQAIDYLKKRTPGRAMVMIT 207
CL+ L + +A + +++T
Sbjct: 243 YENCLLVLLNVQN-AKAWNAFN----LSCKILLT 271
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.1
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 12/34 (35%)
Query: 113 EK-SLKNIQNWFIASLAV-ADFSIGLIIMPFSLA 144
EK +LK +Q ASL + AD S P +LA
Sbjct: 18 EKQALKKLQ----ASLKLYADDS-----AP-ALA 41
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+
transporter, structural GE PSI-2, protein structure
initiative; 2.41A {Shewanella oneidensis mr-1}
Length = 205
Score = 27.1 bits (61), Expect = 4.1
Identities = 3/22 (13%), Positives = 10/22 (45%)
Query: 178 LISLDRYWSITQAIDYLKKRTP 199
++ L ++ QA + ++
Sbjct: 64 MLVLSDKATVAQAQRFFRRIEL 85
>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain,
anti parallel coiled coil, SMC proteins; 2.0A
{Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A
Length = 186
Score = 27.2 bits (61), Expect = 4.2
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 188 TQAIDYLKKRTPGRA 202
+++LK+ GR
Sbjct: 70 KAIVEFLKQNEAGRV 84
>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain,
anti parallel coiled coil, SMC proteins; 3.0A
{Thermotoga maritima} SCOP: d.215.1.1
Length = 213
Score = 26.8 bits (60), Expect = 5.0
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 188 TQAIDYLKKRTPGRA 202
+++LK+ GR
Sbjct: 82 KAIVEFLKQNEAGRV 96
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 27.5 bits (61), Expect = 5.7
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 171 ASIINLCLISLDR---YWSITQAIDYLKKRTPGRAMVMITMV 209
+S +N+ LIS ++ YW Q++ LK P ++ M
Sbjct: 605 SSFLNIELIS-EKTAAYW--CQSVTELKADFPDNIVIASIMC 643
>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge
domai dimerization, DNA binding, cell cycle; 1.70A
{Pyrococcus furiosus}
Length = 189
Score = 26.4 bits (59), Expect = 7.1
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 188 TQAIDYLKKRTPGRA 202
+AI YLK+ GR
Sbjct: 75 EKAIKYLKEHKLGRL 89
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2,
X-RAY, structure, structural genomics, PSI-2; 2.40A
{Bifidobacterium longum NCC2705}
Length = 343
Score = 26.4 bits (59), Expect = 8.6
Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 99 VIVGNMLVIIAIMT--EKSLKNIQNWFIASLAVADFSI--GLI 137
V+ G +V ++ ++ K I S ++ + G++
Sbjct: 291 VVGGGAVVWSRVLARVSEAAKADHGEAIDSFVASEHGLLDGIV 333
>3l51_B Structural maintenance of chromosomes protein 4; structural
maintenance of chromosomes (SMC), hinge domain, C cycle,
cell division, cytoplasm; 1.51A {Mus musculus}
Length = 166
Score = 26.0 bits (58), Expect = 9.5
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 189 QAIDYLKKRTPGRA 202
+ +++LKK G A
Sbjct: 57 ECVNFLKKHNIGIA 70
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.138 0.426
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,613,242
Number of extensions: 206448
Number of successful extensions: 600
Number of sequences better than 10.0: 1
Number of HSP's gapped: 585
Number of HSP's successfully gapped: 38
Length of query: 239
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 148
Effective length of database: 4,160,982
Effective search space: 615825336
Effective search space used: 615825336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.8 bits)