RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1006
         (239 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 68.8 bits (167), Expect = 3e-14
 Identities = 37/189 (19%), Positives = 80/189 (42%), Gaps = 4/189 (2%)

Query: 52  LNGLDNMTFNETLLNNTYISFDTLYPSGYSLT---HIVIASIFVIILMIIVIVGNMLVII 108
           +NG +   F     N T +         Y L       + + ++ +L+++    N L + 
Sbjct: 1   MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLY 60

Query: 109 AIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLL 168
             +  K L+   N+ + +LAVAD  +       +L   L GY++FG   C++      L 
Sbjct: 61  VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 120

Query: 169 CTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVER 228
              ++ +L +++++RY  + + +    +     A++ +   W+++     PPL+GW    
Sbjct: 121 GEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGVAFTWVMALACAAPPLVGWSRYI 179

Query: 229 HDHQQYPKC 237
            +  Q    
Sbjct: 180 PEGMQCSCG 188


>d1sxra_ d.118.1.1 (A:) Peptidoglycan-recognition protein-SA
           (Cg11709) {Fruit fly (Drosophila melanogaster) [TaxId:
           7227]}
          Length = 173

 Score = 26.2 bits (57), Expect = 2.8
 Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 1/82 (1%)

Query: 116 LKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTASIIN 175
           L+N+Q +    L   D S   +I    +  E  G+ + G+     ++ +   +       
Sbjct: 48  LQNMQAYHQNELDFNDISYNFLIGNDGIVYEGTGWGLRGAHTYGYNA-IGTGIAFIGNFV 106

Query: 176 LCLISLDRYWSITQAIDYLKKR 197
             L S     +    +    ++
Sbjct: 107 DKLPSDAALQAAKDLLACGVQQ 128


>d1vkoa1 c.2.1.3 (A:11-314,A:429-521) Myo-inositol 1-phosphate
           synthase {Caenorhabditis elegans [TaxId: 6239]}
          Length = 397

 Score = 26.3 bits (58), Expect = 4.1
 Identities = 8/46 (17%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 10  YNETGALSASGTDVHRTANDILNYL-NDNPSLSNSSLYNYSILLNG 54
              T   +     ++ TA++I+  +  +   +S S+++  + +L G
Sbjct: 226 TANTERYTDVRQGLNATADEIMESIRVNEDEVSPSNIFAVASILEG 271


>d2f2lx1 d.118.1.1 (X:335-499) Peptidoglycan-recognition protein-LC
           {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
          Length = 165

 Score = 25.1 bits (54), Expect = 6.6
 Identities = 12/87 (13%), Positives = 26/87 (29%), Gaps = 2/87 (2%)

Query: 116 LKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDV--LLCTASI 173
           +  +Q++ + S          ++       E  G+   G+     +        + T + 
Sbjct: 47  VNVVQSFHMDSWGWDHIGYNFLVGGDGRVYEGRGWDYVGAHTKGYNRGSIGISFIGTFTT 106

Query: 174 INLCLISLDRYWSITQAIDYLKKRTPG 200
                  L+    + Q    LKK T  
Sbjct: 107 RKPNERQLEACQLLLQEGVRLKKLTTN 133


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 884,810
Number of extensions: 38243
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 17
Length of query: 239
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 156
Effective length of database: 1,268,006
Effective search space: 197808936
Effective search space used: 197808936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.1 bits)