BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10061
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IFU|A Chain A, Crystal Structure Of A Gamma-Snap From Danio Rerio
pdb|2IFU|B Chain B, Crystal Structure Of A Gamma-Snap From Danio Rerio
pdb|2IFU|C Chain C, Crystal Structure Of A Gamma-Snap From Danio Rerio
pdb|2IFU|D Chain D, Crystal Structure Of A Gamma-Snap From Danio Rerio
Length = 307
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 144/284 (50%), Gaps = 3/284 (1%)
Query: 29 RKKEEGMEYVKSAEKHLKTSLLKWKPXXXXXXXXXXXXXTCFKGAKSFQQCKEYLLKAAN 88
+K E E++ AEK+LKTS KWKP FK AK +Q K+ L+ A
Sbjct: 5 QKISEAHEHIAKAEKYLKTSFXKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAE 64
Query: 89 CYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAK 148
+ N+S +HAAK EQA K+L + ++A+ ++E G + A+ L++ K
Sbjct: 65 AHANNRSLFHAAKAFEQAGXXLKDLQRXPEAVQYIEKASVXYVENGTPDTAAXALDRAGK 124
Query: 149 SLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 208
E L A+ LY +AA V E+ +QAAE I +A+R+ VR ++FD+AA +++E
Sbjct: 125 LXEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSX 184
Query: 209 HQESEHLLAIGRXXXXXXXXXXXRGDTVAAEKAFKEWGNC---CEAPEVQTLEKLLQAFD 265
++E E+ + R D VAA+K +E + + + LE LLQA+D
Sbjct: 185 YKEXENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYD 244
Query: 266 EEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPAS 309
E+D E + P + + D +Y++LA L +P +P++
Sbjct: 245 EQDEEQLLRVCRSPLVTYXDNDYAKLAISLKVPGGGGGKKKPSA 288
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 244 EWGNCCEAPEVQTLEKLLQAFDEEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCA 303
EW N E + ++++LQ FD + A+QAL P+IK M S+ + LPS A
Sbjct: 260 EWKNVSEGAK-DLIKQMLQ-FDSQRRISAQQALEHPWIKEM---CSKKESGIELPSLANA 314
Query: 304 T 304
Sbjct: 315 I 315
>pdb|3U0K|A Chain A, Crystal Structure Of The Genetically Encoded Calcium
Indicator Rcamp
Length = 440
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 104 EQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYS 163
E IMM +++ D TD E ++A +F + GN ++ L +L E +D +
Sbjct: 359 EFLIMMARKMKD-TDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 417
Query: 164 RAADV-AHGEDNYKQAAEYIS 183
R AD+ G+ NY++ + ++
Sbjct: 418 READIDGDGQVNYEEFVQMMT 438
>pdb|3BU8|A Chain A, Crystal Structure Of Trf2 Trfh Domain And Tin2 Peptide
Complex
pdb|3BU8|B Chain B, Crystal Structure Of Trf2 Trfh Domain And Tin2 Peptide
Complex
Length = 235
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 137 EAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFD 196
EA T LE LE +K++ LT A V K+AA I C++ KEF+
Sbjct: 82 EAELTPLESAINVLEMIKTEFTLT----EAVVESSRKLVKEAAVII------CIKNKEFE 131
Query: 197 KAADLIRQEIG 207
KA+ ++++ +
Sbjct: 132 KASKILKKHMS 142
>pdb|3VLU|A Chain A, Crystal Structure Of Sphingomonas Sp. A1 Alginate-Binding
Protein Algq1 In Complex With Saturated Trimannuronate
pdb|3VLV|A Chain A, Crystal Structure Of Sphingomonas Sp. A1 Alginate-Binding
Ptotein Algq1 In Complex With Unsaturated Triguluronate
pdb|3VLW|A Chain A, Crystal Structure Of Sphingomonas Sp. A1 Alginate-Binding
Protein Algq1 In Complex With Mannuronate-Guluronate
Disaccharide
pdb|3VLW|B Chain B, Crystal Structure Of Sphingomonas Sp. A1 Alginate-Binding
Protein Algq1 In Complex With Mannuronate-Guluronate
Disaccharide
Length = 502
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 254 VQTLEKLLQAFDEEDPEGARQALNDPFIKHMDVEYSRLA 292
V L +L+AF E+DP G +A PFI E RL
Sbjct: 157 VDELYTVLKAFKEKDPNGNGKADEIPFINRDPEEVFRLV 195
>pdb|1Y3N|A Chain A, Structure Of Algq1, Alginate-binding Protein, Complexed
With An Alginate Disaccharide
pdb|1Y3P|A Chain A, Structure Of Algq1, Alginate-Binding Protein, Complexed
With An Alginate Tetrasaccharide
pdb|1Y3Q|A Chain A, Structure Of Algq1, Alginate-Binding Protein
pdb|3A09|A Chain A, Crystal Structure Of Sphingomonas Sp. A1 Alginate-Binding
Protein Algq1 In Complex With Unsaturated Trimannuronate
Length = 490
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 254 VQTLEKLLQAFDEEDPEGARQALNDPFIKHMDVEYSRLA 292
V L +L+AF E+DP G +A PFI E RL
Sbjct: 157 VDELYTVLKAFKEKDPNGNGKADEIPFINRDPEEVFRLV 195
>pdb|1H6P|A Chain A, Dimeristion Domain From Human Trf2
pdb|1H6P|B Chain B, Dimeristion Domain From Human Trf2
Length = 203
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 137 EAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFD 196
EA T LE LE +K++ LT A V K+AA I C++ KEF+
Sbjct: 81 EAELTPLESAINVLEMIKTEFTLT----EAVVESSRKLVKEAAVII------CIKNKEFE 130
Query: 197 KAADLIRQEIG 207
KA+ ++++ +
Sbjct: 131 KASKILKKHMS 141
>pdb|3BUA|A Chain A, Crystal Structure Of Trf2 Trfh Domain And Apollo Peptide
Complex
pdb|3BUA|B Chain B, Crystal Structure Of Trf2 Trfh Domain And Apollo Peptide
Complex
pdb|3BUA|C Chain C, Crystal Structure Of Trf2 Trfh Domain And Apollo Peptide
Complex
pdb|3BUA|D Chain D, Crystal Structure Of Trf2 Trfh Domain And Apollo Peptide
Complex
Length = 204
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 137 EAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFD 196
EA T LE LE +K++ LT A V K+AA I C++ KEF+
Sbjct: 82 EAELTPLESAINVLEMIKTEFTLT----EAVVESSRKLVKEAAVII------CIKNKEFE 131
Query: 197 KAADLIRQEIG 207
KA+ ++++ +
Sbjct: 132 KASKILKKHMS 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.126 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,189,813
Number of Sequences: 62578
Number of extensions: 290055
Number of successful extensions: 892
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 882
Number of HSP's gapped (non-prelim): 51
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)