BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10061
(325 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CWZ7|SNAG_MOUSE Gamma-soluble NSF attachment protein OS=Mus musculus GN=Napg PE=1
SV=1
Length = 312
Score = 199 bits (507), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/284 (38%), Positives = 169/284 (59%), Gaps = 3/284 (1%)
Query: 29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAAN 88
+K EG+E++ AEK+LKT LKWKPDYDSAA +Y KAA FK AK F+Q K+ L+ A
Sbjct: 4 QKINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLREAV 63
Query: 89 CYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAK 148
+E N++ +HAAK EQA MM KE+ L + L ++A+ ++LE G + A+ LE+ K
Sbjct: 64 AHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGK 123
Query: 149 SLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 208
+E + + A+ LY + A+V E+ +QA E + +A+R+ VR + FD+AA I++E
Sbjct: 124 LIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKEKNI 183
Query: 209 HQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE---WGNCCEAPEVQTLEKLLQAFD 265
++E E+ + +A VLV L R D VAAE+ +E + + LE+LL+ +D
Sbjct: 184 YKEIENYPTCYKKTIAQVLVHLHRNDYVAAERCVRESYSIPGFNGSEDCAALEQLLEGYD 243
Query: 266 EEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPAS 309
++D + + N P K+MD +Y++L L +P PA+
Sbjct: 244 QQDQDQVSEVCNSPLFKYMDNDYAKLGLSLVVPGGGIKKKSPAT 287
>sp|P81127|SNAG_BOVIN Gamma-soluble NSF attachment protein OS=Bos taurus GN=NAPG PE=1
SV=3
Length = 312
Score = 197 bits (501), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 107/275 (38%), Positives = 166/275 (60%), Gaps = 3/275 (1%)
Query: 29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAAN 88
+K EG+E++ AEK+LKT LKWKPDYDSAA +Y KAA FK AK F+Q K+ LK A
Sbjct: 4 QKINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLKEAV 63
Query: 89 CYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAK 148
+E N++ +HAAK EQA MM KE+ L + L ++A+ ++LE G + A+ LE+ K
Sbjct: 64 AHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGK 123
Query: 149 SLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 208
+E + + A+ LY + A+V E+ +QA E + +A+R+ VR + FD+AA I++E
Sbjct: 124 LIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAAISIQKEKNI 183
Query: 209 HQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE---WGNCCEAPEVQTLEKLLQAFD 265
++E E+ + +A VLV L R D VAAE+ +E + + LE+LL+ +D
Sbjct: 184 YKEIENYPTCYKKTIAQVLVHLHRNDYVAAERCVRESYSIPGFNGSEDCAALEQLLEGYD 243
Query: 266 EEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSA 300
++D + + N P K+MD +Y++L L +P
Sbjct: 244 QQDQDQVAEVCNSPLFKYMDNDYAKLGLSLVVPGG 278
>sp|Q99747|SNAG_HUMAN Gamma-soluble NSF attachment protein OS=Homo sapiens GN=NAPG PE=1
SV=1
Length = 312
Score = 190 bits (482), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/284 (38%), Positives = 168/284 (59%), Gaps = 3/284 (1%)
Query: 29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAAN 88
+K EG+E++ AEK+LKT LKWKPDYDSAA +Y KAA FK AK F+Q K+ L+ A
Sbjct: 4 QKINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLREAV 63
Query: 89 CYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAK 148
+E N++ +HAAK EQA MM KE+ L + L ++A+ ++LE G + A+ LE+ K
Sbjct: 64 AHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGK 123
Query: 149 SLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 208
+E + + A+ LY + A+V E+ +QA E + +A+R+ VR + FD+AA I++E
Sbjct: 124 LIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKEKNI 183
Query: 209 HQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE---WGNCCEAPEVQTLEKLLQAFD 265
++E E+ + +A VLV L R D VAAE+ +E + + LE+LL+ +D
Sbjct: 184 YKEIENYPTCYKKTIAQVLVHLHRNDYVAAERCVRESYSIPGFNGSEDCAALEQLLEGYD 243
Query: 266 EEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPAS 309
++D + N P K+MD +Y++L L +P PA+
Sbjct: 244 QQDQDQVSDVCNSPLFKYMDNDYAKLGLSLVVPGGGIKKKSPAT 287
>sp|Q9U9R7|SNAG_DICDI Gamma-soluble NSF attachment protein OS=Dictyostelium discoideum
GN=snpC PE=1 SV=1
Length = 324
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 144/289 (49%), Gaps = 13/289 (4%)
Query: 29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAAN 88
KK EG ++K +K KT++ +WK D+DSAA Y KAA F+ AK + K L+ +
Sbjct: 8 NKKLEGETFMKEGDKLSKTNIFRWKADWDSAALAYEKAANAFRSAKIYDSAKYCFLRLSL 67
Query: 89 CYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAK 148
C Y AAK +E A M KEL + + NL ++ L+ GN A+ + K AK
Sbjct: 68 CQTHMDVYYLAAKSMENASAMAKELKETQECANLLLESCKLYRTNGNSFQAADTMTKAAK 127
Query: 149 SLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADL--IRQEI 206
LE++ + + L + A ++ +D + + + M ++ K++ +A DL ++ +
Sbjct: 128 LLEDIDLNQTIKLLTDACELFELDDKDHFSGDTFKQTISMLLKHKKYTEAVDLMILQNRV 187
Query: 207 GYHQESEHLLAIGRLAVALVLVQLARGDTVAAEK---AFKEWGNCCEAPEVQTLEKLLQA 263
E H L L+V + + LA D VA++K F ++ + + E T ++L+ A
Sbjct: 188 FVKLEQNHDLHKSCLSV--ITISLATDDIVASKKYYEQFLDYPSFIHSQEGTTAQELITA 245
Query: 264 FDEEDPEGARQALNDPFIKHMDVEYSRLARDLPL------PSATCATPR 306
FD D +G ++ ++ +D + +++A++L + P+ P+
Sbjct: 246 FDNHDVDGVKKIVSRHIFNFLDNQVAKIAKNLSISKDSLNPTINSTAPQ 294
>sp|Q9SPE5|SNAG_ARATH Gamma-soluble NSF attachment protein OS=Arabidopsis thaliana
GN=GSNAP PE=2 SV=1
Length = 291
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 144/281 (51%), Gaps = 10/281 (3%)
Query: 25 MTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLL 84
M+SD K + A+K K +L +W D+ A + Y +AA F+ + +++ K L
Sbjct: 1 MSSDPDK-----MMSKADKMTKLTLTRWSADWRGATELYEQAANGFRASNKYEKAKVALE 55
Query: 85 KAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLE 144
KA+ E S + AAKH+E A + ++L+ +V + ++A+ L++E G + AS L
Sbjct: 56 KASKGQEMQASPWDAAKHMESAAALAQKLSIWNEVADFYRKASELYVECGRAQPASDALG 115
Query: 145 KGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRA-ARMCVRVKEFDKAADLIR 203
K A++LE++K D A+ LY+ A ++ ED Q A + RA A + +++++F AA
Sbjct: 116 KAARALEDVKPDDAIQLYTDACEILE-EDGRDQMAFDLYRACANVYIKLEKFTDAATFFL 174
Query: 204 QEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNC---CEAPEVQTLEKL 260
+ + + + + ++ +++ L D AEK + + ++ + ++ +L
Sbjct: 175 RLGVAADKCDATNSQCKAYLSAIILYLYAHDLQQAEKCYNDCSQIDAFLKSDQSRSASRL 234
Query: 261 LQAFDEEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSAT 301
L A++E D E ++ + + ++D +LAR LP T
Sbjct: 235 LTAYNEGDIEEIKKVASASTVSNLDHMIIKLARKLPTGDVT 275
>sp|P93798|SNAA_VITVI Alpha-soluble NSF attachment protein OS=Vitis vinifera PE=2 SV=1
Length = 289
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 103/220 (46%), Gaps = 9/220 (4%)
Query: 56 YDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELND 115
Y+ AAD Y KAA CFK AKS+ + +K + +++ S + AA+ A C +
Sbjct: 29 YEDAADFYDKAANCFKLAKSWDRAGSTYVKLSTVIQSSDSKHEAAQAYADA-GHCYKKTS 87
Query: 116 LTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLE-ELKSDAALTLYSRAADVAHGEDN 174
+ + +QAA LFL+ G A ++ A+ E E + A+ + +AAD+ E+
Sbjct: 88 AKEAISCLEQAAYLFLDNGRFNMAGKYYKEIAELYELEQNFEQAIIYFEKAADIYQSEEA 147
Query: 175 YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVAL--VLVQLAR 232
A + ++ A+ +++++ KA I ++IG + +LL G L + QL +
Sbjct: 148 TTAANQCNAKVAQFAAQLEQYQKAIQ-IYEDIGRPSLNNNLLKYGVKGHLLNAGICQLCK 206
Query: 233 GDTVAAEKAFKEWG----NCCEAPEVQTLEKLLQAFDEED 268
GD VA A + E + L L A DEED
Sbjct: 207 GDVVAITNALDRYQEMDPTFSGTREYKLLVDLAAAVDEED 246
>sp|Q9M5P8|SNAA_SOLTU Alpha-soluble NSF attachment protein OS=Solanum tuberosum PE=2 SV=1
Length = 288
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 105/241 (43%), Gaps = 9/241 (3%)
Query: 34 GMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN 93
G ++ AEK L L + Y+ AAD + KA CFK AKS+ + +K ANC+
Sbjct: 8 GEDFENKAEKKLGGWAL-FGSKYEDAADLFDKAGNCFKLAKSWDKAGAVYVKLANCHLKL 66
Query: 94 KSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL 153
S H A + C + +++ + + +QA FL+ G ++ ++ A+ E+
Sbjct: 67 DSK-HEAANAYADAAHCYKKSNIKEAVSCLEQAVNFFLDIGRLNMSARYYKEIAELYEQE 125
Query: 154 KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE 213
++ Y+ ED + + + A+ + +++ KA + I +EI H +
Sbjct: 126 QNLDQAIRYAVYEINPGSEDVSAPPNQCLKKIAQFSAQNEKYPKAIE-IFEEIARHSVNN 184
Query: 214 HLLAIGRLAVALV--LVQLARGDTVAAEKAFKEWG----NCCEAPEVQTLEKLLQAFDEE 267
+LL G L + QL +GD V A + + E + L L A DEE
Sbjct: 185 NLLKYGVREHLLNAGICQLCKGDVVPINNALERYQELDPTFSGTRECKLLVDLAAAIDEE 244
Query: 268 D 268
D
Sbjct: 245 D 245
>sp|Q9SPE6|SNAA2_ARATH Alpha-soluble NSF attachment protein 2 OS=Arabidopsis thaliana
GN=ASNAP2 PE=1 SV=1
Length = 289
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 102/220 (46%), Gaps = 9/220 (4%)
Query: 56 YDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELND 115
Y+ AAD KAA +K AKS+ Q + LK A+C+ + S H A + C + D
Sbjct: 29 YEDAADLLEKAANSYKLAKSWDQAGKAYLKLADCHLKSDSK-HDAANAYAEAAKCYKKVD 87
Query: 116 LTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLE-ELKSDAALTLYSRAADVAHGEDN 174
+ + ++A +F E G A+ ++ A+ E + K + A+ + +AA+ E+
Sbjct: 88 TNEAASCLERAVNIFCEIGRLNMAARYYKEIAEYYESDQKFEQAIAYFEKAAEFFQNEEV 147
Query: 175 YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALV--LVQLAR 232
A + + A+ ++++++KA I ++I H + +LL G L + L +
Sbjct: 148 TTSANQCNLKVAQYAAQLEQYEKAIK-IYEDIARHSLNNNLLKYGVKGHLLTAGMCHLCK 206
Query: 233 GDTVAAEKAFKEWGNC----CEAPEVQTLEKLLQAFDEED 268
D V+ A +++ + E + L L A DEED
Sbjct: 207 ADVVSITNALEKYQDLDPTFTGTRECKFLADLASAIDEED 246
>sp|Q54NP6|SNAA_DICDI Alpha-soluble NSF attachment protein OS=Dictyostelium discoideum
GN=snpA PE=1 SV=1
Length = 291
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 108/241 (44%), Gaps = 16/241 (6%)
Query: 36 EYVKSAEKHLKT-SLLKW----KPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCY 90
E++ +A+K L+ + K YD AA DY+KAA FK +K + Q KAA C+
Sbjct: 9 EFLDAADKRLRGGNFFKMFGGGSSRYDDAASDYTKAANLFKMSKKWDQAGAAFQKAAECF 68
Query: 91 ETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSL 150
S + AA A C + ++ D K A + ++G R A S +K L
Sbjct: 69 LKGSSKHDAASSYVLA-AGCYKKGNVIDAITCLKAAIEYYTDEG-RFAISAKHQKEIAEL 126
Query: 151 EELKS--DAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 208
E + D A+ Y A+D GE++ + + + + A +++ ++K+ + I +++
Sbjct: 127 YEAEGDFDQAIASYQIASDYFDGENSTVSSHQCLLKIALFSAQLERYEKSIE-IYEQVAA 185
Query: 209 HQESEHLLAIG--RLAVALVLVQLARGDTVAAEKAFKEW----GNCCEAPEVQTLEKLLQ 262
+L G + L LA D V AE+A + + + E + L+ ++Q
Sbjct: 186 ASLDNNLTQWGCKEYFLRACLCYLAADDVVGAERALQRYKDMQASFNSTRECRLLDGIIQ 245
Query: 263 A 263
A
Sbjct: 246 A 246
>sp|P45943|RAPE_BACSU Response regulator aspartate phosphatase E OS=Bacillus subtilis
(strain 168) GN=rapE PE=3 SV=2
Length = 375
Score = 38.9 bits (89), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 83 LLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQ-AATLFLEQGNREAAST 141
NCY + AA+++EQA++ +++N +DV A A ++ +QG +E A
Sbjct: 222 FFNLGNCYHKMDNLNKAARYIEQALVQYRKIN--SDVLPQAYHDLALIYFKQGKKEQAMD 279
Query: 142 VLEKGAKSLEELKSDAALTLYSRAADVAH 170
KG +S + K + + L+ A DV +
Sbjct: 280 CFRKGIRSAVDFKDELFMNLFE-ALDVLY 307
>sp|A4IIL4|BROX_XENTR BRO1 domain-containing protein BROX OS=Xenopus tropicalis GN=brox
PE=2 SV=1
Length = 411
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%)
Query: 54 PDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKEL 113
P Y + Y++ CF A S+ + LL A C E +S A K +A +CKE
Sbjct: 232 PVYIAKWRSYTQLKMCFYMAYSYCYHGQTLLSADKCGEAIRSLQEAEKFYGKAEALCKEY 291
Query: 114 NDLTDVENLAKQAATLFLEQ 133
+ AK + LF +
Sbjct: 292 GETKGPGTTAKPSGHLFFRK 311
>sp|Q7W7H8|ASSY_BORPA Argininosuccinate synthase OS=Bordetella parapertussis (strain
12822 / ATCC BAA-587 / NCTC 13253) GN=argG PE=3 SV=1
Length = 445
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 12/167 (7%)
Query: 142 VLEKGAKSLEELKSDAALTL-YSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAAD 200
++E ++ + E A L + Y R H ED +Q E + R+ + + FD A
Sbjct: 283 IIEAKSRGIYEAPGLALLFIAYERLVTGIHNEDTIEQYRENGRKLGRLLYQGRWFDPQAI 342
Query: 201 LIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKL 260
++R + ++ +A R V ++L RG+ + E N APE ++EK+
Sbjct: 343 MLR------ETAQRWVA--RAITGEVTLELRRGNDYSLLNT--ESANLTYAPERLSMEKV 392
Query: 261 LQA-FDEEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPR 306
A F D G N + + ++ + L PSA A P+
Sbjct: 393 ENAPFTPADRIGQLTMRNLDIVDTREKLFTYVKTGLLAPSAGSALPQ 439
>sp|Q7WKW7|ASSY_BORBR Argininosuccinate synthase OS=Bordetella bronchiseptica (strain
ATCC BAA-588 / NCTC 13252 / RB50) GN=argG PE=3 SV=1
Length = 445
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 12/167 (7%)
Query: 142 VLEKGAKSLEELKSDAALTL-YSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAAD 200
++E ++ + E A L + Y R H ED +Q E + R+ + + FD A
Sbjct: 283 IIEAKSRGIYEAPGLALLFIAYERLVTGIHNEDTIEQYRENGRKLGRLLYQGRWFDPQAI 342
Query: 201 LIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKL 260
++R + ++ +A R V ++L RG+ + E N APE ++EK+
Sbjct: 343 MLR------ETAQRWVA--RAITGEVTLELRRGNDYSLLNT--ESANLTYAPERLSMEKV 392
Query: 261 LQA-FDEEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPR 306
A F D G N + + ++ + L PSA A P+
Sbjct: 393 ENAPFTPADRIGQLTMRNLDIVDTREKLFTYVKTGLLAPSAGSALPQ 439
>sp|A6UNR2|CH60_METVS 60 kDa chaperonin OS=Methanococcus vannielii (strain SB / ATCC
35089 / DSM 1224) GN=groL PE=3 SV=1
Length = 536
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 268 DPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPASI 310
DPE L+DP+I D + S + LP+ AT + RP I
Sbjct: 205 DPERMTAELDDPYILITDKKISNMKEILPVLEATARSSRPLLI 247
>sp|Q7VTJ9|ASSY_BORPE Argininosuccinate synthase OS=Bordetella pertussis (strain Tohama I
/ ATCC BAA-589 / NCTC 13251) GN=argG PE=3 SV=1
Length = 445
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 12/167 (7%)
Query: 142 VLEKGAKSLEELKSDAALTL-YSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAAD 200
++E ++ + E A L + Y R H ED +Q E + R+ + + FD A
Sbjct: 283 IIEAKSRGIYEAPGLALLFIAYERLVTGIHNEDTIEQYRENGRKLGRLLYQGRWFDPQAI 342
Query: 201 LIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKL 260
++R + ++ +A R V ++L RG+ + E N APE ++EK+
Sbjct: 343 MLR------ETAQRWVA--RAITGEVTLELRRGNDYSLLNT--ESANLTYAPERLSMEKV 392
Query: 261 LQA-FDEEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPR 306
A F D G N + + ++ + L PSA A P+
Sbjct: 393 ENAPFTPADRIGQLTMRNLDIVDTREKLFTYVKTGLLAPSAGSALPQ 439
>sp|P81126|SNAB_BOVIN Beta-soluble NSF attachment protein OS=Bos taurus GN=NAPB PE=1 SV=1
Length = 298
Score = 32.0 bits (71), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 120/270 (44%), Gaps = 21/270 (7%)
Query: 25 MTSDRKKEEGMEYVKSAEKHLKTS------LLKWKPDYDSAADDYSKAATCFKGAKSFQQ 78
M + K+ E ++ + AEK +K S L + A + Y++AA FK AK++
Sbjct: 1 MDNAGKEREAVQLMAEAEKRVKASHSFLRGLFGGNTRIEEACEMYTRAANMFKMAKNWSA 60
Query: 79 CKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREA 138
+AA + +S + +A A K+ D + N A ++ + G
Sbjct: 61 AGNAFCQAAKLHMQLQSKHDSATSFVDAGNAYKKA-DPQEAINCLNAAIDIYTDMGRFTI 119
Query: 139 AS----TVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE 194
A+ T+ E L +++ A+ Y ++AD GE++ A + + + A ++++
Sbjct: 120 AAKHHITIAEIYETELVDIEK--AIAHYEQSADYYKGEESNSSANKCLLKVAAYAAQLEQ 177
Query: 195 FDKAADLIRQEIGYHQESEHLLA------IGRLAVALVLVQLARGDTVAAEKAFKEWGNC 248
+ KA ++ Q IG + LL + A+ +V +A EK + +
Sbjct: 178 YQKAIEIFEQ-IGANTMDNPLLKYSAKDYFFKAALCHFIVDELNA-KLALEKYEEMFPAF 235
Query: 249 CEAPEVQTLEKLLQAFDEEDPEGARQALND 278
++ E + L+KLL+A +E++ E +A+ +
Sbjct: 236 TDSRECKLLKKLLEAHEEQNSEAYTEAVKE 265
>sp|Q9L7Q5|GYRA_STRP1 DNA gyrase subunit A OS=Streptococcus pyogenes serotype M1 GN=gyrA
PE=3 SV=1
Length = 828
Score = 31.6 bits (70), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 7/123 (5%)
Query: 77 QQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKE--LNDLTDVENLAKQAATLFLEQG 134
Q +E ++ Y NK+ H E + + +E L +T V + + + F+ +
Sbjct: 250 QTGRERIVVTEFPYGVNKTKVH-----EHIVRLAQEKRLEGITAVRDESSREGVRFVIEI 304
Query: 135 NREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE 194
REA++TV+ L L+++ + + + V + YIS + +R
Sbjct: 305 RREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIRRTR 364
Query: 195 FDK 197
FDK
Sbjct: 365 FDK 367
>sp|P0DG03|GYRA_STRPQ DNA gyrase subunit A OS=Streptococcus pyogenes serotype M3 (strain
SSI-1) GN=gyrA PE=3 SV=1
Length = 828
Score = 31.6 bits (70), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 7/123 (5%)
Query: 77 QQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKE--LNDLTDVENLAKQAATLFLEQG 134
Q +E ++ Y NK+ H E + + +E L +T V + + + F+ +
Sbjct: 250 QTGRERIVVTEFPYGVNKTKVH-----EHIVRLAQEKRLEGITAVRDESSREGVRFVIEI 304
Query: 135 NREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE 194
REA++TV+ L L+++ + + + V + YIS + +R
Sbjct: 305 RREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIRRTR 364
Query: 195 FDK 197
FDK
Sbjct: 365 FDK 367
>sp|Q5XC58|GYRA_STRP6 DNA gyrase subunit A OS=Streptococcus pyogenes serotype M6 (strain
ATCC BAA-946 / MGAS10394) GN=gyrA PE=3 SV=1
Length = 828
Score = 31.6 bits (70), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 7/123 (5%)
Query: 77 QQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKE--LNDLTDVENLAKQAATLFLEQG 134
Q +E ++ Y NK+ H E + + +E L +T V + + + F+ +
Sbjct: 250 QTGRERIVVTEFPYGVNKTKVH-----EHIVRLAQEKRLEGITAVRDESSREGVRFVIEI 304
Query: 135 NREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE 194
REA++TV+ L L+++ + + + V + YIS + +R
Sbjct: 305 RREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIRRTR 364
Query: 195 FDK 197
FDK
Sbjct: 365 FDK 367
>sp|P0DG02|GYRA_STRP3 DNA gyrase subunit A OS=Streptococcus pyogenes serotype M3 (strain
ATCC BAA-595 / MGAS315) GN=gyrA PE=3 SV=1
Length = 828
Score = 31.6 bits (70), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 7/123 (5%)
Query: 77 QQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKE--LNDLTDVENLAKQAATLFLEQG 134
Q +E ++ Y NK+ H E + + +E L +T V + + + F+ +
Sbjct: 250 QTGRERIVVTEFPYGVNKTKVH-----EHIVRLAQEKRLEGITAVRDESSREGVRFVIEI 304
Query: 135 NREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE 194
REA++TV+ L L+++ + + + V + YIS + +R
Sbjct: 305 RREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIRRTR 364
Query: 195 FDK 197
FDK
Sbjct: 365 FDK 367
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.126 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,170,850
Number of Sequences: 539616
Number of extensions: 4338157
Number of successful extensions: 12461
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 12392
Number of HSP's gapped (non-prelim): 92
length of query: 325
length of database: 191,569,459
effective HSP length: 118
effective length of query: 207
effective length of database: 127,894,771
effective search space: 26474217597
effective search space used: 26474217597
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)