Query psy10061
Match_columns 325
No_of_seqs 257 out of 2011
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 16:53:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10061.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10061hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14938 SNAP: Soluble NSF att 100.0 6.1E-37 1.3E-41 273.4 26.8 263 33-296 2-278 (282)
2 KOG1585|consensus 100.0 1.6E-33 3.5E-38 233.4 28.2 265 39-303 10-277 (308)
3 KOG1586|consensus 100.0 7.3E-33 1.6E-37 228.1 26.6 268 8-296 2-277 (288)
4 PF14938 SNAP: Soluble NSF att 99.9 7.7E-21 1.7E-25 169.7 25.1 248 8-262 1-279 (282)
5 KOG1130|consensus 99.9 1E-21 2.2E-26 174.3 14.3 244 28-278 30-300 (639)
6 KOG1130|consensus 99.9 1.8E-20 3.9E-25 166.4 18.3 267 6-277 32-339 (639)
7 KOG1840|consensus 99.8 2.9E-18 6.4E-23 161.3 30.4 248 28-278 212-475 (508)
8 KOG1840|consensus 99.8 3.7E-18 8E-23 160.7 26.3 239 4-245 212-476 (508)
9 KOG1586|consensus 99.8 6.7E-18 1.5E-22 139.9 24.0 237 21-265 18-281 (288)
10 KOG4626|consensus 99.8 3.6E-19 7.7E-24 165.0 15.0 209 27-275 230-478 (966)
11 KOG4626|consensus 99.7 1.3E-16 2.9E-21 148.2 19.2 215 7-245 234-482 (966)
12 PRK11788 tetratricopeptide rep 99.6 3.4E-12 7.3E-17 119.1 29.0 198 61-279 108-308 (389)
13 TIGR00990 3a0801s09 mitochondr 99.6 2.8E-13 6.1E-18 134.0 22.9 230 29-278 308-567 (615)
14 TIGR00990 3a0801s09 mitochondr 99.6 8.7E-13 1.9E-17 130.5 24.5 220 34-278 306-533 (615)
15 PRK11788 tetratricopeptide rep 99.6 1.6E-12 3.5E-17 121.2 25.0 226 27-278 47-274 (389)
16 KOG1585|consensus 99.5 2.1E-12 4.5E-17 108.2 21.0 230 6-244 8-252 (308)
17 TIGR02521 type_IV_pilW type IV 99.5 1.3E-11 2.7E-16 105.6 21.4 201 54-278 25-228 (234)
18 KOG1941|consensus 99.5 2E-11 4.3E-16 107.7 21.4 212 29-245 136-357 (518)
19 COG3063 PilF Tfp pilus assembl 99.4 2.9E-11 6.3E-16 100.9 20.0 201 54-278 29-232 (250)
20 KOG2003|consensus 99.4 3.1E-11 6.8E-16 109.2 21.2 237 24-284 465-728 (840)
21 PRK15174 Vi polysaccharide exp 99.4 7.4E-11 1.6E-15 117.2 25.1 107 158-278 269-377 (656)
22 PRK11447 cellulose synthase su 99.4 1.3E-10 2.9E-15 122.5 27.2 233 28-279 398-737 (1157)
23 PRK04841 transcriptional regul 99.4 5E-10 1.1E-14 115.7 30.9 245 27-278 464-756 (903)
24 TIGR02521 type_IV_pilW type IV 99.4 5.5E-11 1.2E-15 101.6 20.0 186 27-245 43-229 (234)
25 TIGR02917 PEP_TPR_lipo putativ 99.4 7E-11 1.5E-15 120.5 24.2 251 6-277 582-895 (899)
26 PRK11447 cellulose synthase su 99.4 8.2E-11 1.8E-15 124.1 24.5 225 29-278 283-554 (1157)
27 PRK15174 Vi polysaccharide exp 99.4 1.6E-10 3.5E-15 114.8 24.6 125 141-278 285-415 (656)
28 COG3063 PilF Tfp pilus assembl 99.4 3.6E-11 7.9E-16 100.3 15.9 163 95-278 30-198 (250)
29 TIGR03302 OM_YfiO outer membra 99.3 2.2E-10 4.7E-15 99.5 19.6 183 54-245 27-229 (235)
30 TIGR02917 PEP_TPR_lipo putativ 99.3 8.1E-10 1.7E-14 112.8 25.7 131 103-245 570-729 (899)
31 PRK09782 bacteriophage N4 rece 99.3 4E-10 8.7E-15 115.4 22.4 223 29-278 490-736 (987)
32 PRK12370 invasion protein regu 99.3 6.1E-10 1.3E-14 108.8 22.3 183 29-245 275-467 (553)
33 KOG1155|consensus 99.3 6.2E-10 1.3E-14 101.2 19.6 204 24-258 339-547 (559)
34 PRK04841 transcriptional regul 99.3 3.9E-09 8.4E-14 109.1 27.8 212 28-245 504-757 (903)
35 KOG1155|consensus 99.2 6.3E-10 1.4E-14 101.2 16.9 188 67-278 337-532 (559)
36 KOG1941|consensus 99.2 2.7E-09 5.9E-14 94.5 19.7 208 55-263 78-295 (518)
37 COG2956 Predicted N-acetylgluc 99.2 1.1E-08 2.4E-13 89.4 22.8 153 98-262 139-293 (389)
38 PRK09782 bacteriophage N4 rece 99.2 4.4E-09 9.5E-14 107.9 23.7 153 105-278 547-702 (987)
39 KOG2002|consensus 99.2 3.8E-09 8.2E-14 103.6 22.0 238 25-278 280-555 (1018)
40 PRK11189 lipoprotein NlpI; Pro 99.2 7.7E-09 1.7E-13 93.1 22.7 152 29-206 40-192 (296)
41 KOG1129|consensus 99.1 3.5E-09 7.6E-14 92.6 17.0 198 64-278 227-454 (478)
42 COG2956 Predicted N-acetylgluc 99.1 1.2E-07 2.6E-12 83.1 26.2 240 13-278 28-274 (389)
43 KOG1126|consensus 99.1 3.5E-10 7.7E-15 106.8 10.9 126 102-245 491-617 (638)
44 KOG1173|consensus 99.1 1.5E-09 3.3E-14 100.9 14.6 191 26-245 323-515 (611)
45 PF13429 TPR_15: Tetratricopep 99.1 1.9E-09 4.2E-14 96.2 14.5 183 71-278 88-273 (280)
46 TIGR03302 OM_YfiO outer membra 99.1 6E-09 1.3E-13 90.5 17.0 167 27-207 45-231 (235)
47 KOG0548|consensus 99.1 2.1E-08 4.5E-13 92.9 20.9 225 16-265 225-471 (539)
48 PF13424 TPR_12: Tetratricopep 99.1 2.2E-09 4.7E-14 76.5 11.3 74 58-131 3-77 (78)
49 PRK12370 invasion protein regu 99.1 1.2E-08 2.5E-13 99.8 19.8 182 29-245 318-499 (553)
50 PF13424 TPR_12: Tetratricopep 99.1 2.7E-09 5.9E-14 75.9 11.4 74 97-170 2-77 (78)
51 KOG1126|consensus 99.0 1.3E-09 2.7E-14 103.1 10.7 221 29-274 367-612 (638)
52 KOG2076|consensus 99.0 9.6E-08 2.1E-12 93.3 23.7 92 180-278 415-508 (895)
53 KOG2002|consensus 99.0 1.8E-08 3.8E-13 99.0 16.8 234 28-278 465-741 (1018)
54 PRK10049 pgaA outer membrane p 99.0 7.3E-08 1.6E-12 97.8 20.8 201 29-253 251-462 (765)
55 PRK11189 lipoprotein NlpI; Pro 98.9 9.9E-08 2.2E-12 85.9 18.9 183 28-245 77-262 (296)
56 PRK10049 pgaA outer membrane p 98.9 2.6E-07 5.7E-12 93.7 23.6 243 32-295 213-470 (765)
57 KOG0547|consensus 98.9 1.4E-07 3.1E-12 86.7 19.2 130 63-210 363-493 (606)
58 KOG1173|consensus 98.9 5.2E-08 1.1E-12 90.9 16.3 210 56-286 308-522 (611)
59 PF13429 TPR_15: Tetratricopep 98.9 4.3E-08 9.3E-13 87.5 15.6 218 6-245 23-274 (280)
60 cd05804 StaR_like StaR_like; a 98.9 1E-07 2.2E-12 87.8 17.5 192 29-245 20-212 (355)
61 PLN03218 maturation of RBCL 1; 98.9 7.4E-07 1.6E-11 92.4 24.8 247 6-278 487-779 (1060)
62 KOG1129|consensus 98.9 7.9E-09 1.7E-13 90.5 8.1 196 30-245 231-455 (478)
63 KOG2003|consensus 98.9 2.6E-07 5.5E-12 84.3 17.7 224 27-276 431-683 (840)
64 KOG1125|consensus 98.8 9.2E-08 2E-12 89.5 14.5 196 29-245 287-524 (579)
65 PF09976 TPR_21: Tetratricopep 98.8 8.6E-07 1.9E-11 71.1 18.3 135 57-205 9-144 (145)
66 PRK15179 Vi polysaccharide bio 98.8 5.1E-07 1.1E-11 89.6 20.2 168 60-248 49-218 (694)
67 PLN03218 maturation of RBCL 1; 98.8 2.9E-06 6.2E-11 88.1 25.1 221 5-245 521-780 (1060)
68 PRK15179 Vi polysaccharide bio 98.8 3.2E-07 6.8E-12 91.0 16.8 170 10-209 48-218 (694)
69 TIGR00540 hemY_coli hemY prote 98.8 3.1E-06 6.7E-11 79.8 22.4 234 27-278 96-395 (409)
70 KOG0547|consensus 98.7 1.9E-07 4.1E-12 85.9 13.0 204 24-245 335-563 (606)
71 KOG0548|consensus 98.7 2.9E-06 6.4E-11 79.0 20.3 174 59-245 223-418 (539)
72 CHL00033 ycf3 photosystem I as 98.7 5.5E-07 1.2E-11 74.0 14.2 115 95-212 30-146 (168)
73 PF09976 TPR_21: Tetratricopep 98.7 3.7E-06 8.1E-11 67.3 18.3 134 98-245 10-144 (145)
74 cd05804 StaR_like StaR_like; a 98.7 2.4E-06 5.3E-11 78.6 19.2 201 60-278 6-211 (355)
75 PRK15359 type III secretion sy 98.7 4.5E-07 9.8E-12 72.6 12.2 97 103-211 27-124 (144)
76 KOG2076|consensus 98.7 1.2E-05 2.6E-10 79.0 23.9 131 137-278 411-551 (895)
77 PRK10370 formate-dependent nit 98.7 1.8E-06 3.9E-11 72.9 15.8 133 113-263 52-190 (198)
78 PRK10747 putative protoheme IX 98.6 7.1E-06 1.5E-10 77.1 21.3 97 180-278 264-386 (398)
79 PLN03081 pentatricopeptide (PP 98.6 1.8E-06 4E-11 86.9 18.5 93 181-278 393-487 (697)
80 CHL00033 ycf3 photosystem I as 98.6 1.9E-06 4E-11 70.9 14.7 115 55-172 30-146 (168)
81 KOG0550|consensus 98.6 4.5E-06 9.7E-11 75.6 17.5 130 108-245 211-347 (486)
82 PRK15359 type III secretion sy 98.6 1.4E-06 3E-11 69.8 13.0 104 121-245 14-118 (144)
83 PRK02603 photosystem I assembl 98.6 5.1E-06 1.1E-10 68.6 16.5 110 93-211 28-145 (172)
84 PRK10747 putative protoheme IX 98.6 1.1E-05 2.4E-10 75.7 20.8 199 26-245 129-387 (398)
85 PLN03081 pentatricopeptide (PP 98.6 4.8E-06 1.1E-10 83.9 19.3 196 66-278 296-519 (697)
86 PRK10866 outer membrane biogen 98.6 1.9E-05 4.1E-10 68.9 20.4 175 59-243 32-236 (243)
87 PLN03077 Protein ECB2; Provisi 98.6 2E-05 4.3E-10 81.3 23.8 51 68-127 432-482 (857)
88 KOG3617|consensus 98.6 1.4E-05 3.1E-10 77.9 20.5 181 54-245 926-1171(1416)
89 PF13525 YfiO: Outer membrane 98.5 3.3E-05 7.1E-10 65.6 20.7 168 101-274 6-199 (203)
90 PRK10370 formate-dependent nit 98.5 1.4E-06 3.1E-11 73.6 12.1 122 73-212 52-177 (198)
91 PRK10866 outer membrane biogen 98.5 2.1E-05 4.5E-10 68.7 19.6 170 102-277 34-236 (243)
92 PLN03077 Protein ECB2; Provisi 98.5 2.9E-05 6.2E-10 80.2 23.4 224 7-245 370-651 (857)
93 PF13525 YfiO: Outer membrane 98.5 7.8E-05 1.7E-09 63.3 21.6 165 66-239 11-198 (203)
94 TIGR00540 hemY_coli hemY prote 98.5 2.4E-05 5.2E-10 73.8 19.4 134 100-245 263-396 (409)
95 KOG1125|consensus 98.4 1.5E-06 3.3E-11 81.5 10.6 101 100-212 430-531 (579)
96 COG5010 TadD Flp pilus assembl 98.4 1.6E-05 3.4E-10 68.1 15.4 156 104-278 70-227 (257)
97 TIGR02795 tol_pal_ybgF tol-pal 98.4 5.7E-06 1.2E-10 63.2 11.3 104 101-210 3-107 (119)
98 cd00189 TPR Tetratricopeptide 98.4 1.5E-06 3.1E-11 62.4 7.3 95 102-208 2-97 (100)
99 PRK15363 pathogenicity island 98.4 1.4E-05 3E-10 64.0 13.2 102 97-210 32-134 (157)
100 PRK14574 hmsH outer membrane p 98.4 2.3E-05 5E-10 79.4 17.7 182 28-245 47-229 (822)
101 PRK14574 hmsH outer membrane p 98.4 2.6E-05 5.6E-10 79.1 18.0 190 61-278 36-228 (822)
102 KOG0553|consensus 98.4 3.6E-05 7.8E-10 67.3 16.4 96 138-245 79-175 (304)
103 PLN02789 farnesyltranstransfer 98.3 0.0002 4.4E-09 64.9 21.3 174 67-265 78-266 (320)
104 PRK14720 transcript cleavage f 98.3 6.1E-05 1.3E-09 76.1 19.4 228 27-278 43-283 (906)
105 PRK02603 photosystem I assembl 98.3 2.8E-05 6E-10 64.2 14.3 95 134-237 29-124 (172)
106 TIGR02795 tol_pal_ybgF tol-pal 98.3 1.4E-05 3.1E-10 60.9 11.7 105 141-251 3-109 (119)
107 KOG1174|consensus 98.3 4.1E-05 8.8E-10 69.6 15.9 183 30-248 315-500 (564)
108 PRK15363 pathogenicity island 98.3 3E-05 6.4E-10 62.1 13.5 97 137-245 32-129 (157)
109 TIGR02552 LcrH_SycD type III s 98.3 2.7E-05 5.9E-10 61.1 13.3 99 100-210 17-116 (135)
110 cd00189 TPR Tetratricopeptide 98.3 4.6E-06 1E-10 59.6 8.0 92 142-245 2-94 (100)
111 PF12895 Apc3: Anaphase-promot 98.3 9.9E-06 2.1E-10 58.3 9.5 80 155-245 5-84 (84)
112 COG5010 TadD Flp pilus assembl 98.2 1.8E-05 4E-10 67.7 11.9 157 64-244 70-227 (257)
113 PLN03088 SGT1, suppressor of 98.2 2.5E-05 5.4E-10 72.1 13.8 85 149-245 12-96 (356)
114 PF13414 TPR_11: TPR repeat; P 98.2 7.5E-06 1.6E-10 56.5 8.0 63 140-208 3-67 (69)
115 KOG0553|consensus 98.2 1E-05 2.2E-10 70.6 10.1 121 97-235 78-199 (304)
116 TIGR02552 LcrH_SycD type III s 98.2 4.5E-05 9.8E-10 59.9 12.8 94 140-245 17-111 (135)
117 PRK10803 tol-pal system protei 98.2 3.8E-05 8.3E-10 67.6 13.5 100 152-257 156-256 (263)
118 KOG4162|consensus 98.2 0.00011 2.3E-09 71.4 17.2 124 104-245 654-780 (799)
119 PLN03088 SGT1, suppressor of 98.2 1.9E-05 4.2E-10 72.9 11.8 96 103-210 5-101 (356)
120 KOG0550|consensus 98.2 0.00016 3.5E-09 65.7 16.9 128 28-171 216-353 (486)
121 PF12895 Apc3: Anaphase-promot 98.2 3E-05 6.5E-10 55.8 9.9 82 113-205 2-84 (84)
122 PF13414 TPR_11: TPR repeat; P 98.1 1.2E-05 2.6E-10 55.4 7.4 64 60-129 3-67 (69)
123 PF12688 TPR_5: Tetratrico pep 98.1 8.9E-05 1.9E-09 57.1 12.6 101 101-207 2-103 (120)
124 PRK10803 tol-pal system protei 98.1 4.2E-05 9.2E-10 67.3 11.8 106 60-171 143-249 (263)
125 PF10345 Cohesin_load: Cohesin 98.1 0.0041 8.9E-08 61.7 27.0 229 32-278 8-250 (608)
126 PF12569 NARP1: NMDA receptor- 98.1 0.0025 5.5E-08 61.4 24.1 227 27-278 16-287 (517)
127 KOG1156|consensus 98.1 0.00043 9.2E-09 66.3 18.3 194 60-278 8-210 (700)
128 PF12688 TPR_5: Tetratrico pep 98.1 0.00011 2.5E-09 56.5 11.7 98 142-245 3-101 (120)
129 KOG0495|consensus 98.0 0.00044 9.6E-09 66.3 17.7 212 7-245 634-877 (913)
130 KOG3617|consensus 98.0 0.0012 2.5E-08 65.1 20.3 114 100-213 858-1007(1416)
131 PRK14720 transcript cleavage f 98.0 0.00069 1.5E-08 68.7 19.7 148 60-222 31-192 (906)
132 KOG1464|consensus 98.0 0.0028 6E-08 55.0 20.3 241 29-278 41-328 (440)
133 PLN02789 farnesyltranstransfer 98.0 0.00044 9.6E-09 62.7 16.5 166 53-245 33-209 (320)
134 KOG4162|consensus 98.0 0.00081 1.8E-08 65.6 18.9 166 68-248 365-543 (799)
135 KOG0543|consensus 98.0 0.00014 3.1E-09 66.1 12.9 108 98-211 206-323 (397)
136 PF10345 Cohesin_load: Cohesin 98.0 0.019 4E-07 57.1 28.5 235 8-245 8-251 (608)
137 KOG0624|consensus 98.0 0.0013 2.7E-08 58.8 17.8 192 29-245 169-367 (504)
138 KOG3060|consensus 97.9 0.0039 8.4E-08 53.5 19.9 200 18-245 14-217 (289)
139 KOG1127|consensus 97.9 0.00033 7.1E-09 70.0 14.5 155 73-245 471-656 (1238)
140 KOG1127|consensus 97.9 0.00064 1.4E-08 68.0 16.0 109 106-232 568-677 (1238)
141 COG3071 HemY Uncharacterized e 97.9 0.01 2.2E-07 54.0 22.2 233 29-280 98-388 (400)
142 KOG0543|consensus 97.8 0.00036 7.8E-09 63.5 12.6 139 59-209 207-356 (397)
143 KOG4555|consensus 97.8 0.0011 2.5E-08 51.0 13.0 96 142-245 45-141 (175)
144 KOG2300|consensus 97.8 0.037 8.1E-07 51.8 24.8 208 29-245 289-511 (629)
145 KOG1128|consensus 97.7 0.00035 7.6E-09 67.7 11.7 121 108-245 458-579 (777)
146 KOG2376|consensus 97.7 0.0068 1.5E-07 57.7 19.7 67 179-245 175-250 (652)
147 PF13432 TPR_16: Tetratricopep 97.7 0.00011 2.4E-09 49.9 6.0 56 184-245 2-57 (65)
148 PF12862 Apc5: Anaphase-promot 97.7 0.0013 2.8E-08 48.4 12.1 76 150-225 9-87 (94)
149 PF13432 TPR_16: Tetratricopep 97.7 0.00013 2.9E-09 49.5 6.4 59 145-209 2-61 (65)
150 COG2909 MalT ATP-dependent tra 97.7 0.018 3.8E-07 57.6 23.0 233 4-244 428-684 (894)
151 PF12862 Apc5: Anaphase-promot 97.7 0.001 2.2E-08 49.0 11.3 81 71-151 9-92 (94)
152 KOG3785|consensus 97.7 0.0052 1.1E-07 55.2 17.5 107 3-126 9-117 (557)
153 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0022 4.7E-08 59.7 15.2 123 106-249 175-298 (395)
154 KOG3616|consensus 97.6 0.0019 4.2E-08 62.8 14.7 65 100-165 661-732 (1636)
155 KOG4555|consensus 97.6 0.0018 3.9E-08 50.0 11.7 100 101-208 44-144 (175)
156 KOG3060|consensus 97.6 0.029 6.3E-07 48.3 20.1 126 67-210 93-222 (289)
157 PF13176 TPR_7: Tetratricopept 97.6 0.00021 4.6E-09 42.4 5.1 33 181-213 1-33 (36)
158 PF10602 RPN7: 26S proteasome 97.6 0.019 4.1E-07 47.5 18.3 126 121-249 17-144 (177)
159 PF04190 DUF410: Protein of un 97.6 0.037 8E-07 48.8 21.1 121 158-278 69-216 (260)
160 COG3071 HemY Uncharacterized e 97.6 0.038 8.3E-07 50.4 21.1 59 180-245 329-387 (400)
161 PF10602 RPN7: 26S proteasome 97.5 0.0056 1.2E-07 50.7 14.4 127 80-209 16-143 (177)
162 KOG1128|consensus 97.5 0.0027 6E-08 61.7 13.9 140 112-269 497-638 (777)
163 COG0457 NrfG FOG: TPR repeat [ 97.5 0.019 4.1E-07 47.3 17.9 123 109-245 139-262 (291)
164 KOG0495|consensus 97.5 0.01 2.3E-07 57.3 17.1 184 69-278 593-778 (913)
165 PF13176 TPR_7: Tetratricopept 97.5 0.00039 8.4E-09 41.3 5.1 34 102-135 1-34 (36)
166 KOG1174|consensus 97.5 0.004 8.8E-08 57.0 13.7 152 29-210 348-502 (564)
167 KOG0624|consensus 97.4 0.061 1.3E-06 48.4 20.2 158 67-245 79-249 (504)
168 PF13371 TPR_9: Tetratricopept 97.4 0.00073 1.6E-08 46.8 6.6 54 186-245 2-55 (73)
169 PF09986 DUF2225: Uncharacteri 97.4 0.0043 9.4E-08 52.9 12.4 95 114-208 91-194 (214)
170 COG2909 MalT ATP-dependent tra 97.4 0.12 2.5E-06 52.0 23.6 249 24-278 423-684 (894)
171 COG1729 Uncharacterized protei 97.4 0.0019 4.1E-08 56.1 10.2 107 143-255 145-252 (262)
172 KOG1156|consensus 97.4 0.022 4.9E-07 54.9 18.1 163 65-245 46-211 (700)
173 KOG1070|consensus 97.4 0.078 1.7E-06 55.5 22.8 241 5-274 1439-1692(1710)
174 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.001 2.2E-08 62.0 8.9 67 60-129 75-141 (453)
175 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.001 2.3E-08 61.9 9.0 68 98-168 73-141 (453)
176 PF13512 TPR_18: Tetratricopep 97.3 0.0045 9.8E-08 48.8 11.2 99 147-251 18-132 (142)
177 COG0457 NrfG FOG: TPR repeat [ 97.3 0.03 6.5E-07 46.1 17.0 200 60-278 59-261 (291)
178 PF04733 Coatomer_E: Coatomer 97.3 0.0015 3.2E-08 58.6 8.6 26 181-206 203-228 (290)
179 PF14559 TPR_19: Tetratricopep 97.2 0.00085 1.8E-08 45.8 5.6 50 190-245 2-51 (68)
180 PRK10153 DNA-binding transcrip 97.2 0.0081 1.8E-07 58.2 14.0 143 54-210 334-484 (517)
181 PF09295 ChAPs: ChAPs (Chs5p-A 97.2 0.0088 1.9E-07 55.7 13.4 116 67-203 176-292 (395)
182 COG2976 Uncharacterized protei 97.2 0.05 1.1E-06 45.1 16.0 116 131-256 80-197 (207)
183 KOG4340|consensus 97.2 0.003 6.5E-08 55.5 9.1 62 178-245 143-204 (459)
184 KOG2300|consensus 97.2 0.11 2.4E-06 48.8 19.5 204 29-244 337-552 (629)
185 KOG4234|consensus 97.1 0.007 1.5E-07 50.2 10.6 105 61-172 96-201 (271)
186 KOG3616|consensus 97.1 0.017 3.8E-07 56.5 14.7 184 61-245 662-908 (1636)
187 PRK15331 chaperone protein Sic 97.1 0.039 8.4E-07 44.6 14.6 93 141-245 38-131 (165)
188 PF12569 NARP1: NMDA receptor- 97.1 0.022 4.8E-07 55.0 15.7 134 96-245 190-331 (517)
189 KOG4340|consensus 97.1 0.084 1.8E-06 46.7 17.5 100 140-245 144-267 (459)
190 PRK10153 DNA-binding transcrip 97.1 0.019 4E-07 55.7 15.0 114 115-245 357-479 (517)
191 COG1729 Uncharacterized protei 97.1 0.0047 1E-07 53.7 9.5 105 61-172 143-248 (262)
192 PF00515 TPR_1: Tetratricopept 97.1 0.0011 2.3E-08 38.6 3.8 30 180-209 2-31 (34)
193 PF11817 Foie-gras_1: Foie gra 97.0 0.19 4.2E-06 43.9 22.4 88 155-242 154-241 (247)
194 PF13371 TPR_9: Tetratricopept 97.0 0.0027 5.9E-08 43.9 6.4 58 147-210 2-60 (73)
195 KOG2047|consensus 97.0 0.039 8.6E-07 53.3 15.8 221 29-264 361-595 (835)
196 KOG4234|consensus 97.0 0.0094 2E-07 49.5 10.2 104 100-210 95-199 (271)
197 PF09986 DUF2225: Uncharacteri 97.0 0.016 3.5E-07 49.4 12.3 98 75-172 92-198 (214)
198 KOG2581|consensus 97.0 0.16 3.5E-06 46.6 18.9 212 59-278 123-342 (493)
199 KOG2376|consensus 97.0 0.36 7.9E-06 46.4 23.7 115 54-168 93-253 (652)
200 COG4783 Putative Zn-dependent 96.9 0.041 8.9E-07 51.5 14.9 119 108-245 314-434 (484)
201 KOG2041|consensus 96.9 0.054 1.2E-06 52.9 16.0 80 54-144 748-833 (1189)
202 PF12968 DUF3856: Domain of Un 96.9 0.09 2E-06 40.0 13.9 113 99-211 6-132 (144)
203 PF07719 TPR_2: Tetratricopept 96.9 0.0016 3.5E-08 37.6 3.8 30 180-209 2-31 (34)
204 PF12968 DUF3856: Domain of Un 96.9 0.098 2.1E-06 39.8 13.9 115 58-172 5-133 (144)
205 COG4700 Uncharacterized protei 96.9 0.081 1.8E-06 43.6 14.4 127 102-244 91-218 (251)
206 PF00515 TPR_1: Tetratricopept 96.9 0.0031 6.8E-08 36.5 4.8 30 100-129 1-30 (34)
207 KOG4648|consensus 96.9 0.0025 5.5E-08 56.9 6.1 94 65-170 102-196 (536)
208 KOG1463|consensus 96.9 0.33 7.2E-06 43.7 21.9 248 29-278 18-274 (411)
209 KOG1464|consensus 96.8 0.045 9.8E-07 47.7 13.3 201 26-232 76-285 (440)
210 COG2976 Uncharacterized protei 96.8 0.22 4.9E-06 41.3 19.0 109 176-291 86-197 (207)
211 PF13374 TPR_10: Tetratricopep 96.8 0.0036 7.9E-08 37.9 5.0 34 179-212 2-35 (42)
212 COG4783 Putative Zn-dependent 96.8 0.05 1.1E-06 50.9 14.3 114 152-278 319-433 (484)
213 PF14559 TPR_19: Tetratricopep 96.8 0.0034 7.5E-08 42.7 5.3 50 154-209 6-55 (68)
214 COG4105 ComL DNA uptake lipopr 96.8 0.31 6.7E-06 42.3 18.6 177 33-245 33-230 (254)
215 COG4700 Uncharacterized protei 96.7 0.038 8.3E-07 45.5 11.5 92 145-245 94-186 (251)
216 KOG1839|consensus 96.7 0.098 2.1E-06 54.5 17.1 183 61-244 933-1124(1236)
217 PRK15331 chaperone protein Sic 96.7 0.028 6.1E-07 45.4 10.7 99 97-207 34-133 (165)
218 PF04733 Coatomer_E: Coatomer 96.7 0.035 7.6E-07 49.8 12.6 151 102-278 104-261 (290)
219 COG4105 ComL DNA uptake lipopr 96.7 0.35 7.6E-06 41.9 19.7 183 58-276 33-227 (254)
220 PF13374 TPR_10: Tetratricopep 96.6 0.0057 1.2E-07 37.0 5.0 34 100-133 2-35 (42)
221 KOG1463|consensus 96.6 0.5 1.1E-05 42.6 20.0 145 100-245 48-194 (411)
222 KOG2047|consensus 96.6 0.28 6.1E-06 47.7 17.7 188 56-245 244-451 (835)
223 PF13181 TPR_8: Tetratricopept 96.6 0.0062 1.3E-07 35.2 4.5 31 180-210 2-32 (34)
224 COG5159 RPN6 26S proteasome re 96.5 0.52 1.1E-05 41.5 21.5 216 29-248 17-236 (421)
225 PF07719 TPR_2: Tetratricopept 96.5 0.0085 1.8E-07 34.5 4.8 30 101-130 2-31 (34)
226 KOG2471|consensus 96.5 0.37 8.1E-06 45.5 17.5 255 64-323 287-691 (696)
227 PF03704 BTAD: Bacterial trans 96.4 0.086 1.9E-06 41.8 11.8 63 142-210 64-127 (146)
228 PF13512 TPR_18: Tetratricopep 96.4 0.031 6.7E-07 44.1 8.8 88 10-113 10-97 (142)
229 COG4235 Cytochrome c biogenesi 96.4 0.065 1.4E-06 47.3 11.5 100 100-211 156-259 (287)
230 PF03704 BTAD: Bacterial trans 96.4 0.065 1.4E-06 42.5 10.9 61 179-245 62-122 (146)
231 PF13181 TPR_8: Tetratricopept 96.3 0.012 2.5E-07 34.0 4.7 30 101-130 2-31 (34)
232 PF10300 DUF3808: Protein of u 96.3 0.14 3.1E-06 49.1 14.5 159 73-245 201-373 (468)
233 KOG0551|consensus 96.3 0.085 1.8E-06 47.2 11.8 151 6-171 31-185 (390)
234 PF11817 Foie-gras_1: Foie gra 96.3 0.11 2.4E-06 45.4 12.7 91 115-205 153-244 (247)
235 KOG1839|consensus 96.2 0.071 1.5E-06 55.5 12.6 180 29-212 946-1132(1236)
236 PF13431 TPR_17: Tetratricopep 96.2 0.0055 1.2E-07 35.7 2.8 33 161-199 1-33 (34)
237 KOG3081|consensus 96.1 0.15 3.3E-06 44.3 12.3 169 102-297 110-297 (299)
238 KOG0551|consensus 96.1 0.082 1.8E-06 47.3 10.7 117 87-211 68-185 (390)
239 PF04184 ST7: ST7 protein; In 96.0 0.67 1.5E-05 44.0 16.9 123 112-246 180-322 (539)
240 COG4235 Cytochrome c biogenesi 96.0 0.17 3.6E-06 44.8 12.1 28 181-208 158-185 (287)
241 KOG4648|consensus 96.0 0.022 4.8E-07 51.1 6.7 96 103-210 100-196 (536)
242 KOG1070|consensus 95.9 0.47 1E-05 50.1 16.7 185 71-278 1469-1659(1710)
243 KOG3081|consensus 95.9 0.48 1E-05 41.3 14.2 148 62-240 110-262 (299)
244 KOG0687|consensus 95.8 1.1 2.3E-05 40.3 16.4 130 79-211 83-213 (393)
245 COG5159 RPN6 26S proteasome re 95.8 1.2 2.6E-05 39.3 18.0 145 99-244 44-190 (421)
246 COG4785 NlpI Lipoprotein NlpI, 95.8 0.92 2E-05 38.5 15.0 69 54-129 60-128 (297)
247 KOG4642|consensus 95.7 0.052 1.1E-06 46.4 7.7 97 65-173 15-112 (284)
248 PF13174 TPR_6: Tetratricopept 95.7 0.012 2.7E-07 33.5 2.9 29 181-209 2-30 (33)
249 PF10300 DUF3808: Protein of u 95.7 2.1 4.6E-05 41.2 24.5 121 113-245 201-331 (468)
250 PF12739 TRAPPC-Trs85: ER-Golg 95.5 1.3 2.8E-05 41.9 17.1 165 26-213 219-404 (414)
251 KOG1538|consensus 95.5 0.75 1.6E-05 44.9 15.1 24 185-208 779-802 (1081)
252 PF08626 TRAPPC9-Trs120: Trans 95.4 2.5 5.3E-05 45.7 20.6 52 58-109 240-291 (1185)
253 KOG4642|consensus 95.4 0.12 2.6E-06 44.3 8.5 98 104-213 14-112 (284)
254 KOG2581|consensus 95.4 2.1 4.6E-05 39.6 16.9 223 59-300 168-392 (493)
255 KOG2796|consensus 95.3 1.8 3.8E-05 37.9 15.4 135 100-245 177-312 (366)
256 COG5187 RPN7 26S proteasome re 95.3 2 4.3E-05 38.1 16.0 133 77-212 92-225 (412)
257 PF10516 SHNi-TPR: SHNi-TPR; 95.3 0.045 9.8E-07 32.7 4.2 33 180-212 2-34 (38)
258 PF13428 TPR_14: Tetratricopep 95.2 0.035 7.5E-07 34.3 3.8 32 180-211 2-33 (44)
259 KOG2041|consensus 95.0 4.3 9.3E-05 40.3 21.2 32 56-87 792-823 (1189)
260 COG0790 FOG: TPR repeat, SEL1 94.9 2.6 5.7E-05 37.4 20.3 141 75-245 92-263 (292)
261 PRK11906 transcriptional regul 94.8 1.4 3E-05 41.6 14.8 99 155-265 320-419 (458)
262 COG4785 NlpI Lipoprotein NlpI, 94.8 0.12 2.6E-06 43.7 6.8 98 136-245 61-159 (297)
263 COG0790 FOG: TPR repeat, SEL1 94.7 3 6.5E-05 37.1 16.7 158 28-207 54-265 (292)
264 PF13174 TPR_6: Tetratricopept 94.7 0.051 1.1E-06 30.8 3.3 30 221-250 2-32 (33)
265 KOG2471|consensus 94.6 0.071 1.5E-06 50.1 5.7 84 143-232 286-382 (696)
266 PF04190 DUF410: Protein of un 94.6 2.9 6.4E-05 36.8 22.2 154 54-208 4-170 (260)
267 PF08631 SPO22: Meiosis protei 94.6 3.1 6.7E-05 37.0 19.1 59 72-130 5-66 (278)
268 PF10579 Rapsyn_N: Rapsyn N-te 94.4 0.63 1.4E-05 32.6 8.6 64 149-215 16-79 (80)
269 COG3898 Uncharacterized membra 94.2 4.6 0.0001 37.4 23.1 239 29-277 98-387 (531)
270 PF04184 ST7: ST7 protein; In 94.2 3.4 7.5E-05 39.4 15.7 123 70-204 178-320 (539)
271 PF02259 FAT: FAT domain; Int 94.1 2.9 6.3E-05 38.0 15.5 112 57-170 143-289 (352)
272 KOG3024|consensus 94.1 3.9 8.5E-05 36.1 21.1 205 53-278 19-258 (312)
273 KOG3785|consensus 94.1 0.53 1.1E-05 42.7 9.7 89 146-245 29-117 (557)
274 KOG2610|consensus 94.0 3.6 7.8E-05 37.3 14.6 129 68-207 145-275 (491)
275 PF10516 SHNi-TPR: SHNi-TPR; 94.0 0.14 3E-06 30.6 4.1 32 101-132 2-33 (38)
276 KOG4507|consensus 93.9 0.11 2.5E-06 49.8 5.6 89 146-245 613-702 (886)
277 KOG4322|consensus 93.9 3.9 8.5E-05 38.2 15.1 181 53-234 266-454 (482)
278 KOG4322|consensus 93.9 2.6 5.7E-05 39.3 14.0 148 60-207 313-470 (482)
279 PF13428 TPR_14: Tetratricopep 93.8 0.17 3.7E-06 31.1 4.6 28 102-129 3-30 (44)
280 KOG2796|consensus 93.7 4 8.6E-05 35.8 13.9 131 68-209 185-316 (366)
281 KOG0545|consensus 93.6 4.5 9.7E-05 35.1 14.3 109 98-245 176-290 (329)
282 PF06552 TOM20_plant: Plant sp 93.6 1.1 2.3E-05 36.9 9.9 85 155-245 7-99 (186)
283 smart00028 TPR Tetratricopepti 93.6 0.13 2.8E-06 27.9 3.5 29 180-208 2-30 (34)
284 KOG0545|consensus 93.5 1.3 2.7E-05 38.4 10.6 101 176-278 175-289 (329)
285 PF08626 TRAPPC9-Trs120: Trans 93.4 3.2 7E-05 44.8 16.1 203 97-299 239-573 (1185)
286 PF13431 TPR_17: Tetratricopep 93.3 0.087 1.9E-06 30.6 2.4 32 83-120 2-33 (34)
287 PF05843 Suf: Suppressor of fo 93.1 3.4 7.5E-05 36.7 13.6 128 103-245 4-133 (280)
288 PF04781 DUF627: Protein of un 92.8 1.3 2.8E-05 33.3 8.6 95 107-207 3-106 (111)
289 KOG4814|consensus 92.7 1 2.2E-05 43.9 9.8 97 182-278 357-453 (872)
290 KOG0686|consensus 92.5 9 0.00019 35.7 20.5 166 127-295 137-315 (466)
291 KOG1915|consensus 92.3 11 0.00023 36.0 23.3 58 181-245 406-463 (677)
292 smart00028 TPR Tetratricopepti 91.9 0.3 6.5E-06 26.3 3.5 28 102-129 3-30 (34)
293 PF08631 SPO22: Meiosis protei 91.6 9.4 0.0002 33.9 24.7 88 28-118 6-102 (278)
294 KOG1538|consensus 91.5 14 0.0003 36.6 15.8 132 110-245 680-830 (1081)
295 PF11207 DUF2989: Protein of u 91.3 0.84 1.8E-05 38.2 6.8 58 140-199 141-198 (203)
296 KOG4521|consensus 91.3 22 0.00047 37.6 18.5 234 67-320 927-1193(1480)
297 PF07721 TPR_4: Tetratricopept 91.3 0.33 7.1E-06 26.1 3.0 22 222-243 4-25 (26)
298 PF13281 DUF4071: Domain of un 90.8 14 0.0003 34.4 18.5 167 61-245 142-331 (374)
299 KOG1920|consensus 90.7 16 0.00035 38.5 16.4 40 3-42 863-907 (1265)
300 PF12739 TRAPPC-Trs85: ER-Golg 90.6 15 0.00034 34.6 19.5 171 61-245 209-396 (414)
301 PF05843 Suf: Suppressor of fo 90.4 2.9 6.3E-05 37.2 10.0 134 63-211 4-139 (280)
302 KOG1550|consensus 89.6 15 0.00033 36.1 15.1 119 73-208 262-393 (552)
303 KOG0687|consensus 89.4 16 0.00035 33.1 15.7 112 136-250 100-213 (393)
304 PF07721 TPR_4: Tetratricopept 89.1 0.72 1.6E-05 24.8 3.2 23 181-203 3-25 (26)
305 PF10579 Rapsyn_N: Rapsyn N-te 89.1 6.1 0.00013 27.8 8.7 62 72-136 18-79 (80)
306 PF11207 DUF2989: Protein of u 88.6 6.3 0.00014 33.1 9.8 58 179-239 141-198 (203)
307 KOG4507|consensus 88.4 0.52 1.1E-05 45.5 3.7 94 105-209 612-706 (886)
308 KOG3024|consensus 88.3 15 0.00032 32.6 12.2 133 93-245 19-153 (312)
309 PRK11906 transcriptional regul 88.2 24 0.00053 33.5 19.4 149 77-245 275-433 (458)
310 KOG1550|consensus 88.0 13 0.00027 36.7 13.3 118 29-168 263-393 (552)
311 PF13281 DUF4071: Domain of un 87.5 24 0.00052 32.8 14.5 125 72-208 194-334 (374)
312 KOG3783|consensus 87.1 30 0.00065 33.5 17.7 87 174-260 444-534 (546)
313 PF06552 TOM20_plant: Plant sp 87.1 1.5 3.2E-05 36.1 5.2 61 32-93 45-106 (186)
314 KOG4814|consensus 87.1 4.7 0.0001 39.6 9.2 97 143-245 358-454 (872)
315 KOG2114|consensus 86.4 20 0.00044 36.4 13.3 137 23-169 376-551 (933)
316 KOG0686|consensus 86.3 17 0.00037 33.9 11.9 110 88-205 138-255 (466)
317 PF04053 Coatomer_WDAD: Coatom 86.1 14 0.00031 35.2 12.1 102 70-200 328-436 (443)
318 PF14853 Fis1_TPR_C: Fis1 C-te 86.1 3.7 8.1E-05 26.5 5.7 29 180-208 2-30 (53)
319 COG3118 Thioredoxin domain-con 85.6 26 0.00057 31.3 15.6 114 149-269 144-290 (304)
320 PF14853 Fis1_TPR_C: Fis1 C-te 85.3 2.5 5.5E-05 27.3 4.6 43 221-263 3-46 (53)
321 KOG2053|consensus 85.0 50 0.0011 34.0 20.1 87 28-131 22-108 (932)
322 PRK10941 hypothetical protein; 83.9 13 0.00029 32.8 10.1 85 175-265 177-262 (269)
323 KOG2908|consensus 83.8 34 0.00074 31.2 18.9 179 110-296 85-277 (380)
324 PF10952 DUF2753: Protein of u 83.1 19 0.00041 27.7 9.2 67 64-130 5-80 (140)
325 PF04053 Coatomer_WDAD: Coatom 82.9 33 0.00072 32.8 13.0 108 63-202 298-412 (443)
326 KOG3364|consensus 82.3 16 0.00034 28.8 8.5 80 179-262 32-115 (149)
327 COG5187 RPN7 26S proteasome re 82.1 37 0.00081 30.4 15.2 128 119-249 94-223 (412)
328 PRK13184 pknD serine/threonine 82.0 3.2 7E-05 43.2 6.2 96 30-130 483-582 (932)
329 PF02259 FAT: FAT domain; Int 82.0 39 0.00085 30.5 21.9 114 96-211 142-290 (352)
330 PF10373 EST1_DNA_bind: Est1 D 81.7 4.3 9.4E-05 35.6 6.4 43 158-206 1-43 (278)
331 PF12854 PPR_1: PPR repeat 81.5 3.3 7.1E-05 23.8 3.7 25 180-204 8-32 (34)
332 KOG1497|consensus 80.9 43 0.00094 30.3 19.6 100 176-278 100-206 (399)
333 TIGR03504 FimV_Cterm FimV C-te 80.6 3.6 7.7E-05 25.4 3.7 25 183-207 3-27 (44)
334 TIGR03504 FimV_Cterm FimV C-te 80.5 8.8 0.00019 23.7 5.5 37 104-144 3-39 (44)
335 cd02681 MIT_calpain7_1 MIT: do 78.8 20 0.00042 25.1 8.3 30 103-132 9-38 (76)
336 cd02680 MIT_calpain7_2 MIT: do 78.6 5.5 0.00012 27.8 4.6 35 31-71 3-37 (75)
337 KOG1920|consensus 78.5 68 0.0015 34.2 13.9 11 73-83 893-903 (1265)
338 KOG0985|consensus 78.4 62 0.0014 34.2 13.4 125 65-207 1109-1248(1666)
339 KOG0376|consensus 78.4 2.1 4.5E-05 40.5 3.2 80 154-245 19-98 (476)
340 cd02682 MIT_AAA_Arch MIT: doma 78.3 20 0.00044 25.0 7.6 33 101-133 7-39 (75)
341 PF01535 PPR: PPR repeat; Int 78.0 4 8.7E-05 22.1 3.3 26 181-206 2-27 (31)
342 PF04212 MIT: MIT (microtubule 77.9 7.5 0.00016 26.3 5.2 31 32-68 3-33 (69)
343 cd02679 MIT_spastin MIT: domai 77.5 8.8 0.00019 27.0 5.4 16 155-170 24-39 (79)
344 PF14561 TPR_20: Tetratricopep 77.4 16 0.00034 26.4 7.0 50 220-269 23-76 (90)
345 PF04212 MIT: MIT (microtubule 77.3 11 0.00024 25.5 5.9 27 105-131 10-36 (69)
346 PF09670 Cas_Cas02710: CRISPR- 77.1 64 0.0014 30.1 17.4 132 67-211 138-273 (379)
347 PHA02537 M terminase endonucle 76.8 36 0.00077 29.4 10.0 110 24-134 92-212 (230)
348 KOG2114|consensus 76.7 96 0.0021 31.9 14.2 50 36-89 348-397 (933)
349 PF02071 NSF: Aromatic-di-Alan 76.0 1.1 2.4E-05 19.5 0.4 9 61-69 3-11 (12)
350 KOG2610|consensus 76.0 64 0.0014 29.6 14.3 158 72-245 115-273 (491)
351 COG4649 Uncharacterized protei 75.7 45 0.00097 27.6 14.9 142 70-245 49-193 (221)
352 COG3118 Thioredoxin domain-con 75.4 24 0.00051 31.6 8.7 56 184-245 139-194 (304)
353 COG5091 SGT1 Suppressor of G2 75.2 20 0.00042 31.6 7.9 78 155-232 55-132 (368)
354 KOG0985|consensus 75.2 1.2E+02 0.0026 32.3 18.2 166 60-245 1061-1246(1666)
355 PF04910 Tcf25: Transcriptiona 75.2 70 0.0015 29.6 15.9 96 145-245 108-219 (360)
356 cd02682 MIT_AAA_Arch MIT: doma 75.1 23 0.00049 24.7 6.9 13 54-66 20-32 (75)
357 TIGR00756 PPR pentatricopeptid 74.9 7.2 0.00016 21.5 3.9 26 181-206 2-27 (35)
358 PRK13184 pknD serine/threonine 74.8 11 0.00024 39.4 7.6 88 155-245 491-578 (932)
359 cd02678 MIT_VPS4 MIT: domain c 74.1 10 0.00022 26.3 5.1 33 32-70 4-36 (75)
360 PF05053 Menin: Menin; InterP 74.0 45 0.00097 32.6 10.7 94 116-211 253-350 (618)
361 PF15015 NYD-SP12_N: Spermatog 73.5 32 0.00069 32.4 9.3 100 29-134 190-296 (569)
362 KOG0276|consensus 73.1 84 0.0018 31.2 12.2 80 162-245 653-747 (794)
363 PF12854 PPR_1: PPR repeat 73.1 9.1 0.0002 21.9 3.9 25 101-125 8-32 (34)
364 KOG3783|consensus 73.1 26 0.00057 33.8 8.9 76 54-129 443-520 (546)
365 KOG2062|consensus 72.8 1.1E+02 0.0023 31.2 13.1 160 66-245 65-236 (929)
366 PRK10941 hypothetical protein; 72.8 38 0.00082 30.0 9.5 75 131-211 172-247 (269)
367 PF07079 DUF1347: Protein of u 72.5 92 0.002 29.8 20.1 65 187-258 470-534 (549)
368 cd02681 MIT_calpain7_1 MIT: do 72.1 24 0.00052 24.6 6.5 32 33-70 5-36 (76)
369 smart00745 MIT Microtubule Int 72.0 12 0.00025 25.9 5.1 13 31-43 5-17 (77)
370 PF13041 PPR_2: PPR repeat fam 71.7 9.5 0.00021 23.7 4.2 28 180-207 4-31 (50)
371 cd02677 MIT_SNX15 MIT: domain 71.6 24 0.00051 24.6 6.4 13 31-43 22-34 (75)
372 KOG3364|consensus 71.6 42 0.00091 26.4 8.2 65 140-208 32-100 (149)
373 smart00745 MIT Microtubule Int 71.6 19 0.0004 24.9 6.0 25 108-132 16-40 (77)
374 PF04097 Nic96: Nup93/Nic96; 71.1 1.2E+02 0.0026 30.4 14.7 20 229-248 515-534 (613)
375 cd02683 MIT_1 MIT: domain cont 70.3 14 0.00029 25.9 5.0 29 33-67 5-33 (77)
376 cd02684 MIT_2 MIT: domain cont 70.2 14 0.0003 25.7 5.0 11 32-42 4-14 (75)
377 PF07720 TPR_3: Tetratricopept 69.2 20 0.00044 20.9 4.8 23 181-203 3-25 (36)
378 PF12309 KBP_C: KIF-1 binding 68.3 1E+02 0.0022 28.7 18.1 167 29-214 138-344 (371)
379 KOG1915|consensus 68.1 1.2E+02 0.0026 29.3 19.4 112 155-277 190-304 (677)
380 KOG1308|consensus 67.9 3.7 8.1E-05 37.2 2.1 84 113-208 127-211 (377)
381 cd02683 MIT_1 MIT: domain cont 67.7 19 0.00041 25.2 5.3 23 110-132 16-38 (77)
382 PF13812 PPR_3: Pentatricopept 67.6 16 0.00034 20.1 4.2 27 181-207 3-29 (34)
383 KOG1938|consensus 67.5 42 0.0009 34.8 9.4 56 132-187 308-364 (960)
384 KOG0292|consensus 65.6 63 0.0014 33.5 10.1 47 155-205 650-698 (1202)
385 KOG2908|consensus 65.5 1.1E+02 0.0024 28.0 20.3 83 68-150 83-166 (380)
386 cd02656 MIT MIT: domain contai 64.1 22 0.00047 24.5 5.1 10 55-64 21-30 (75)
387 cd02678 MIT_VPS4 MIT: domain c 63.9 32 0.00069 23.7 5.9 23 110-132 16-38 (75)
388 KOG3824|consensus 62.4 10 0.00022 34.1 3.7 67 98-171 115-182 (472)
389 cd02679 MIT_spastin MIT: domai 62.2 24 0.00052 24.8 4.9 17 193-209 22-38 (79)
390 COG5290 IkappaB kinase complex 62.1 1.3E+02 0.0028 31.0 11.4 21 134-154 936-956 (1243)
391 KOG1308|consensus 62.1 4 8.6E-05 37.1 1.2 55 71-131 125-179 (377)
392 KOG0890|consensus 61.7 3E+02 0.0066 32.0 15.1 108 57-172 1667-1788(2382)
393 cd02656 MIT MIT: domain contai 61.5 32 0.00068 23.6 5.5 25 108-132 14-38 (75)
394 PF10255 Paf67: RNA polymerase 61.4 26 0.00056 33.0 6.4 63 182-245 125-190 (404)
395 KOG0739|consensus 60.5 32 0.0007 31.0 6.4 34 30-69 6-39 (439)
396 COG3629 DnrI DNA-binding trans 60.1 42 0.00091 29.9 7.2 61 179-245 153-213 (280)
397 KOG1938|consensus 60.0 68 0.0015 33.4 9.4 142 100-245 237-381 (960)
398 PF15015 NYD-SP12_N: Spermatog 60.0 1.6E+02 0.0035 28.0 11.5 113 53-165 169-312 (569)
399 cd02680 MIT_calpain7_2 MIT: do 59.5 57 0.0012 22.7 7.3 38 55-93 2-39 (75)
400 KOG0376|consensus 59.2 21 0.00046 33.9 5.4 87 27-130 16-102 (476)
401 PF13041 PPR_2: PPR repeat fam 58.7 26 0.00057 21.6 4.4 27 101-127 4-30 (50)
402 PF10373 EST1_DNA_bind: Est1 D 58.5 23 0.00049 31.0 5.5 43 79-127 1-43 (278)
403 PF10952 DUF2753: Protein of u 58.3 85 0.0018 24.3 12.4 62 183-245 5-76 (140)
404 cd02684 MIT_2 MIT: domain cont 56.5 39 0.00084 23.4 5.2 34 57-91 4-37 (75)
405 cd02677 MIT_SNX15 MIT: domain 56.4 43 0.00094 23.2 5.4 18 114-131 20-37 (75)
406 TIGR02561 HrpB1_HrpK type III 56.3 1E+02 0.0022 24.7 11.2 108 181-296 12-120 (153)
407 COG4649 Uncharacterized protei 56.2 1.2E+02 0.0025 25.2 16.6 163 110-300 49-218 (221)
408 KOG0276|consensus 56.0 29 0.00063 34.2 5.8 26 63-88 669-694 (794)
409 cd09247 BRO1_Alix_like_2 Prote 55.4 1.7E+02 0.0037 26.9 12.2 25 221-245 255-279 (346)
410 cd09240 BRO1_Alix Protein-inte 54.9 1.7E+02 0.0038 26.8 13.1 37 96-132 115-160 (346)
411 COG3947 Response regulator con 54.3 1.7E+02 0.0036 26.5 10.3 60 180-245 280-339 (361)
412 COG1516 FliS Flagellin-specifi 53.6 99 0.0022 24.1 7.4 24 70-93 41-64 (132)
413 COG5091 SGT1 Suppressor of G2 53.2 51 0.0011 29.1 6.4 91 18-113 40-132 (368)
414 PF04097 Nic96: Nup93/Nic96; 52.6 2.2E+02 0.0049 28.5 11.8 100 98-204 412-530 (613)
415 PF04781 DUF627: Protein of un 51.8 1E+02 0.0022 23.3 10.2 96 70-168 6-107 (111)
416 COG2178 Predicted RNA-binding 51.8 1.4E+02 0.0031 25.0 11.5 63 183-245 33-95 (204)
417 PF10255 Paf67: RNA polymerase 51.7 2.2E+02 0.0047 27.0 13.6 33 179-211 164-196 (404)
418 KOG2053|consensus 51.4 2.1E+02 0.0046 29.8 11.1 51 180-237 78-128 (932)
419 PF03745 DUF309: Domain of unk 50.5 53 0.0012 21.8 4.9 54 188-241 8-61 (62)
420 KOG4014|consensus 50.4 83 0.0018 26.3 6.8 90 108-205 35-138 (248)
421 KOG4422|consensus 49.4 2.4E+02 0.0053 26.9 20.4 61 218-278 521-586 (625)
422 KOG1497|consensus 47.4 2.3E+02 0.0049 26.0 22.3 108 137-245 100-210 (399)
423 KOG4521|consensus 47.4 82 0.0018 33.7 7.7 123 106-237 926-1072(1480)
424 KOG3824|consensus 45.5 65 0.0014 29.2 5.9 67 138-210 115-181 (472)
425 KOG1997|consensus 45.0 4.3E+02 0.0094 29.3 12.6 35 55-89 1074-1108(1518)
426 smart00671 SEL1 Sel1-like repe 44.1 51 0.0011 18.2 3.7 13 115-127 20-32 (36)
427 PF09613 HrpB1_HrpK: Bacterial 43.9 1.7E+02 0.0038 23.6 11.4 60 180-245 11-70 (160)
428 cd07669 BAR_SNX33 The Bin/Amph 43.7 1.2E+02 0.0026 25.6 6.9 107 13-132 6-113 (207)
429 PF14561 TPR_20: Tetratricopep 43.4 1.2E+02 0.0026 21.7 7.0 31 180-210 23-53 (90)
430 cd07626 BAR_SNX9_like The Bin/ 42.8 1.3E+02 0.0028 25.3 7.2 75 30-115 15-90 (199)
431 cd07670 BAR_SNX18 The Bin/Amph 42.6 1.2E+02 0.0026 25.6 6.8 92 13-115 6-98 (207)
432 KOG1953|consensus 42.1 15 0.00032 38.1 1.7 54 179-232 245-298 (1235)
433 PF00244 14-3-3: 14-3-3 protei 42.1 2.3E+02 0.0049 24.5 20.8 51 195-245 142-195 (236)
434 PF09613 HrpB1_HrpK: Bacterial 41.5 1.9E+02 0.0041 23.4 9.6 86 140-237 10-96 (160)
435 PF03097 BRO1: BRO1-like domai 41.4 2.9E+02 0.0063 25.5 12.3 35 97-131 104-147 (377)
436 COG3629 DnrI DNA-binding trans 41.3 2.6E+02 0.0057 24.9 11.5 43 124-166 191-237 (280)
437 PF12309 KBP_C: KIF-1 binding 40.7 3.1E+02 0.0067 25.6 18.5 50 196-245 266-335 (371)
438 KOG4563|consensus 40.1 1.5E+02 0.0032 27.5 7.5 65 177-241 39-105 (400)
439 cd07668 BAR_SNX9 The Bin/Amphi 39.7 1.5E+02 0.0033 25.1 6.9 106 14-132 7-113 (210)
440 PF05053 Menin: Menin; InterP 39.6 3.9E+02 0.0084 26.5 11.6 96 55-172 252-351 (618)
441 KOG0591|consensus 39.3 2.3E+02 0.0051 25.6 8.3 43 223-265 95-138 (375)
442 COG4976 Predicted methyltransf 37.9 48 0.001 28.7 3.8 28 102-129 31-58 (287)
443 PF14689 SPOB_a: Sensor_kinase 37.6 1.2E+02 0.0026 20.0 5.4 27 184-210 28-54 (62)
444 cd09246 BRO1_Alix_like_1 Prote 36.0 3.5E+02 0.0076 24.9 13.8 37 96-132 107-152 (353)
445 COG4976 Predicted methyltransf 35.9 59 0.0013 28.2 4.1 29 140-168 29-58 (287)
446 cd09239 BRO1_HD-PTP_like Prote 34.7 3.8E+02 0.0082 24.9 11.8 37 96-132 110-155 (361)
447 PF04010 DUF357: Protein of un 34.1 97 0.0021 21.5 4.3 27 217-243 33-59 (75)
448 KOG1914|consensus 33.8 4.8E+02 0.01 25.8 19.2 80 154-245 381-461 (656)
449 PF08238 Sel1: Sel1 repeat; I 33.7 93 0.002 17.5 4.0 12 116-127 24-35 (39)
450 PF02064 MAS20: MAS20 protein 33.5 37 0.0008 26.1 2.3 29 183-211 67-95 (121)
451 TIGR02561 HrpB1_HrpK type III 33.3 77 0.0017 25.4 4.1 50 181-236 46-95 (153)
452 cd09242 BRO1_ScBro1_like Prote 33.1 3.9E+02 0.0085 24.6 13.8 35 97-131 104-147 (348)
453 KOG1998|consensus 31.6 3.4E+02 0.0074 30.3 9.6 125 100-229 1043-1168(1548)
454 PF00244 14-3-3: 14-3-3 protei 31.5 3.4E+02 0.0074 23.4 18.9 90 120-210 91-200 (236)
455 PF10475 DUF2450: Protein of u 30.9 3.8E+02 0.0083 23.8 15.1 106 187-298 135-242 (291)
456 COG1516 FliS Flagellin-specifi 29.7 2.7E+02 0.0059 21.7 7.9 37 31-73 28-64 (132)
457 PF03635 Vps35: Vacuolar prote 29.6 6.6E+02 0.014 26.1 16.9 107 119-225 611-731 (762)
458 COG4575 ElaB Uncharacterized c 29.6 1.8E+02 0.0039 21.6 5.2 40 6-47 13-52 (104)
459 KOG1811|consensus 29.0 2.2E+02 0.0048 28.4 7.0 63 202-267 572-635 (1141)
460 cd07645 I-BAR_IMD_BAIAP2L1 Inv 28.5 3.3E+02 0.0072 23.3 7.3 53 53-114 29-81 (226)
461 PF06160 EzrA: Septation ring 28.5 2.3E+02 0.005 28.0 7.5 38 53-90 509-546 (560)
462 COG1849 Uncharacterized protei 28.3 2.3E+02 0.005 20.4 5.9 28 218-245 40-67 (90)
463 PF11846 DUF3366: Domain of un 27.3 3.5E+02 0.0076 22.2 8.8 32 100-131 144-175 (193)
464 cd09247 BRO1_Alix_like_2 Prote 27.2 4.9E+02 0.011 23.9 9.6 18 29-46 134-151 (346)
465 PRK04778 septation ring format 27.0 2.3E+02 0.0049 28.2 7.2 57 29-90 493-549 (569)
466 smart00299 CLH Clathrin heavy 26.7 2.9E+02 0.0063 21.0 10.0 13 114-126 21-33 (140)
467 PF07219 HemY_N: HemY protein 26.3 2.7E+02 0.0059 20.6 7.4 28 218-245 58-85 (108)
468 TIGR02710 CRISPR-associated pr 26.1 5.5E+02 0.012 24.1 16.4 58 67-125 137-196 (380)
469 KOG1310|consensus 26.0 4.7E+02 0.01 25.9 8.5 83 30-126 389-471 (758)
470 KOG2709|consensus 25.6 1.1E+02 0.0024 28.8 4.3 34 99-132 21-54 (560)
471 KOG0013|consensus 25.6 2.5E+02 0.0054 23.9 5.9 39 240-278 50-89 (231)
472 cd09241 BRO1_ScRim20-like Prot 25.3 5.4E+02 0.012 23.7 10.4 17 76-92 131-147 (355)
473 COG3947 Response regulator con 24.9 4E+02 0.0087 24.1 7.4 28 102-129 281-308 (361)
474 KOG1498|consensus 24.3 6.1E+02 0.013 23.9 21.8 45 28-77 25-69 (439)
475 PF09205 DUF1955: Domain of un 24.0 3.7E+02 0.008 21.3 8.7 30 99-128 119-148 (161)
476 cd09245 BRO1_UmRIM23-like Prot 24.0 3.8E+02 0.0083 25.4 7.8 31 179-209 296-326 (413)
477 PF03635 Vps35: Vacuolar prote 23.8 8.3E+02 0.018 25.3 25.2 31 233-263 699-734 (762)
478 KOG4563|consensus 23.1 4E+02 0.0087 24.8 7.2 62 57-118 38-101 (400)
479 smart00299 CLH Clathrin heavy 22.9 3.5E+02 0.0075 20.6 11.5 46 72-124 19-64 (140)
480 KOG1914|consensus 22.4 7.7E+02 0.017 24.4 16.7 80 155-245 347-427 (656)
481 cd09034 BRO1_Alix_like Protein 22.4 5.9E+02 0.013 23.1 12.6 15 157-171 211-225 (345)
482 cd09246 BRO1_Alix_like_1 Prote 22.3 6.2E+02 0.013 23.3 15.3 26 220-245 248-273 (353)
483 cd07644 I-BAR_IMD_BAIAP2L2 Inv 22.2 4.9E+02 0.011 22.1 7.5 52 53-113 29-80 (215)
484 cd09245 BRO1_UmRIM23-like Prot 22.0 6.8E+02 0.015 23.7 9.4 17 155-171 312-328 (413)
485 TIGR00985 3a0801s04tom mitocho 21.9 1E+02 0.0022 24.6 3.0 29 183-211 94-123 (148)
486 KOG0890|consensus 21.8 1.4E+03 0.03 27.2 15.4 128 76-211 1645-1787(2382)
487 PHA02537 M terminase endonucle 21.7 5.3E+02 0.011 22.3 11.0 121 54-175 65-214 (230)
488 cd09241 BRO1_ScRim20-like Prot 21.7 6.4E+02 0.014 23.2 13.2 36 97-132 103-147 (355)
489 KOG0739|consensus 21.0 1.4E+02 0.0031 27.0 4.0 42 1-47 1-42 (439)
490 cd09034 BRO1_Alix_like Protein 21.0 5.7E+02 0.012 23.2 8.3 18 29-46 135-152 (345)
491 cd09243 BRO1_Brox_like Protein 20.9 4.8E+02 0.01 24.2 7.6 18 29-46 135-152 (353)
492 COG3014 Uncharacterized protei 20.5 6.9E+02 0.015 23.2 16.3 38 55-92 53-90 (449)
493 KOG3807|consensus 20.3 6.9E+02 0.015 23.1 12.5 179 58-242 234-425 (556)
No 1
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=100.00 E-value=6.1e-37 Score=273.38 Aligned_cols=263 Identities=31% Similarity=0.426 Sum_probs=225.7
Q ss_pred HHHHHHHHHHhhhccc--cc----CCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061 33 EGMEYVKSAEKHLKTS--LL----KWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA 106 (325)
Q Consensus 33 eA~~l~~~A~~~~~~~--~~----~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~ 106 (325)
+|.+++++|++.++++ +| .|+++|++|+++|.+||++|+..++|++|.++|.++++++.+.++...++.+|.++
T Consensus 2 ~a~~l~~~Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~A 81 (282)
T PF14938_consen 2 EAEELIKEAEKKLKKSSGFFSFFGSKKPDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEA 81 (282)
T ss_dssp HHHHHHHHHHHHCS---TCCCHH--SCHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccccchhhhcCCCCCCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555555555432 21 23579999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C-HHHHHHHHHHHHHHHhcCCChhhHHHHHHH
Q psy10061 107 IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL-K-SDAALTLYSRAADVAHGEDNYKQAAEYISR 184 (325)
Q Consensus 107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~-~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~ 184 (325)
+.+|.+. ++++|+++|++|+++|...|++..++.++.++|.+|+.. + +++|+++|++|+++++..+.......++.+
T Consensus 82 a~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~ 160 (282)
T PF14938_consen 82 ANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLK 160 (282)
T ss_dssp HHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHH
Confidence 9999986 999999999999999999999999999999999999998 5 999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----cccCCChHHHHHHH
Q psy10061 185 AARMCVRVKEFDKAADLIRQEIGYHQESE-HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW----GNCCEAPEVQTLEK 259 (325)
Q Consensus 185 lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~~~~~e~~~l~~ 259 (325)
+|.++.++|+|++|++.|++....+.+.+ ........++..++|++..||+..|.+.|+++ +.|.+++|++++.+
T Consensus 161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~ 240 (282)
T PF14938_consen 161 AADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLED 240 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Confidence 99999999999999999999887654433 24456667889999999999999999999997 78999999999999
Q ss_pred HHHHHhcCCHHHHHHHhcC-hhhhcccHHHHHHhhcCC
Q psy10061 260 LLQAFDEEDPEGARQALND-PFIKHMDVEYSRLARDLP 296 (325)
Q Consensus 260 L~~a~~~gd~~~~~~~~~~-~~~~~l~~~~~~~~~~l~ 296 (325)
|+++++.||++.+.+++.. +.+..||+|.+.|+.+++
T Consensus 241 l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~~~k 278 (282)
T PF14938_consen 241 LLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLLKIK 278 (282)
T ss_dssp HHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999998764
No 2
>KOG1585|consensus
Probab=100.00 E-value=1.6e-33 Score=233.35 Aligned_cols=265 Identities=37% Similarity=0.567 Sum_probs=247.7
Q ss_pred HHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH
Q psy10061 39 KSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTD 118 (325)
Q Consensus 39 ~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~e 118 (325)
.++.+........|++||+.|+..|.+++.+|++.++|++|..++.+|.+.++....++.+|.+|+.++.+..++..+.|
T Consensus 10 ~ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsE 89 (308)
T KOG1585|consen 10 SEADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSE 89 (308)
T ss_pred HHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33333333333448999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHH
Q psy10061 119 VENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKA 198 (325)
Q Consensus 119 A~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 198 (325)
++.+|++|..+|.+.|.++.++.++.+.|.+.+..+++.|+.+|++++.+++..+....+.+.+..++.++++..++.+|
T Consensus 90 vvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 90 VVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred HHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh---cccCCChHHHHHHHHHHHHhcCCHHHHHHH
Q psy10061 199 ADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW---GNCCEAPEVQTLEKLLQAFDEEDPEGARQA 275 (325)
Q Consensus 199 ~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~---~~~~~~~e~~~l~~L~~a~~~gd~~~~~~~ 275 (325)
...+.+-..+..+...+......+...+++|+...||..|..+++.+ +.|..+++++.+.+|+.+|+.||++.+...
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~~kv 249 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEIKKV 249 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHHHHH
Confidence 99999988888888777778888899999999999999999999995 999999999999999999999999999999
Q ss_pred hcChhhhcccHHHHHHhhcCCCCCCCCC
Q psy10061 276 LNDPFIKHMDVEYSRLARDLPLPSATCA 303 (325)
Q Consensus 276 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 303 (325)
+..+.++.||+++.++-++|++|+++--
T Consensus 250 l~sp~~r~MDneya~l~kdl~~P~gn~~ 277 (308)
T KOG1585|consen 250 LSSPTVRNMDNEYAHLNKDLSNPNGNYV 277 (308)
T ss_pred HcChHhhhhhHHHHHHhhccCCCCCCcc
Confidence 9999999999999999999999999643
No 3
>KOG1586|consensus
Probab=100.00 E-value=7.3e-33 Score=228.08 Aligned_cols=268 Identities=22% Similarity=0.269 Sum_probs=234.4
Q ss_pred hhhhHHHHHHhhchhccccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy10061 8 EEGMEYVKSAEKHSLSTMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAA 87 (325)
Q Consensus 8 ~~~~~~~~~ae~~~~~~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~ 87 (325)
+++.+|+++|||.++++..+. +|.++..+++|+++|.+++++|+..++|+.|..+|.+++
T Consensus 2 ~~a~~l~k~AEkK~~~s~gF~--------------------lfgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA 61 (288)
T KOG1586|consen 2 SDAVQLMKKAEKKLNGSGGFL--------------------LFGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAA 61 (288)
T ss_pred ccHHHHHHHHHHhcccCCccc--------------------ccCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 466777777777777543321 122356788888888889999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C-HHHHHHHHHHH
Q psy10061 88 NCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL-K-SDAALTLYSRA 165 (325)
Q Consensus 88 ~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~-~-~~~A~~~y~~A 165 (325)
+++.+.++...++.+|..++++|.+ +++.+|+.+++++++||...|.+..+++.+..+|.+|+.. . +++||.+|++|
T Consensus 62 ~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~A 140 (288)
T KOG1586|consen 62 DLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQA 140 (288)
T ss_pred HHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 5999999999999999999999999999999999999976 4 99999999999
Q ss_pred HHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHh
Q psy10061 166 ADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE-HLLAIGRLAVALVLVQLARGDTVAAEKAFKE 244 (325)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~ 244 (325)
.+.|........+..++.+.+..-..+++|.+|++.|++...-....+ ..+..-..++..|+||+...|...+...+++
T Consensus 141 ae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALek 220 (288)
T KOG1586|consen 141 AEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEK 220 (288)
T ss_pred HHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHH
Confidence 999998888888899999999999999999999999999876433332 2344556788999999999998888888887
Q ss_pred h----cccCCChHHHHHHHHHHHHhcCCHHHHHHHhcC-hhhhcccHHHHHHhhcCC
Q psy10061 245 W----GNCCEAPEVQTLEKLLQAFDEEDPEGARQALND-PFIKHMDVEYSRLARDLP 296 (325)
Q Consensus 245 ~----~~~~~~~e~~~l~~L~~a~~~gd~~~~~~~~~~-~~~~~l~~~~~~~~~~l~ 296 (325)
+ |.|.+++|+++|..|.++++.+|.+.+.++++. +.+.+||.|.+.|+.+++
T Consensus 221 y~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vkefDsisrLD~W~ttiLlkiK 277 (288)
T KOG1586|consen 221 YQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEFDSISRLDQWKTTILLKIK 277 (288)
T ss_pred HHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 6 899999999999999999999999999999999 999999999999998876
No 4
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.89 E-value=7.7e-21 Score=169.72 Aligned_cols=248 Identities=22% Similarity=0.252 Sum_probs=179.7
Q ss_pred hhhhHHHHHHhhchhc---cc---cc-cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcC------
Q psy10061 8 EEGMEYVKSAEKHSLS---TM---TS-DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAK------ 74 (325)
Q Consensus 8 ~~~~~~~~~ae~~~~~---~~---~~-~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g------ 74 (325)
++|++|+++|||.+++ || .+ ++++++|.++|.+|.+.++. .++|++|+++|.+++.++...+
T Consensus 1 ~~a~~l~~~Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~Aa~~fk~-----~~~~~~A~~ay~kAa~~~~~~~~~~~Aa 75 (282)
T PF14938_consen 1 QEAEELIKEAEKKLKKSSGFFSFFGSKKPDYEEAADLYEKAANCFKL-----AKDWEKAAEAYEKAADCYEKLGDKFEAA 75 (282)
T ss_dssp -HHHHHHHHHHHHCS---TCCCHH--SCHHHHHHHHHHHHHHHHHHH-----TT-CHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CCHHHHHHHHHHHhccccchhhhcCCCCCCHHHHHHHHHHHHHHHHH-----HhccchhHHHHHHHHHHHHHcCCHHHHH
Confidence 5899999999999994 33 22 35999999999999999987 4666777777766665544333
Q ss_pred -------------CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10061 75 -------------SFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKEL-NDLTDVENLAKQAATLFLEQGNREAAS 140 (325)
Q Consensus 75 -------------~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~-g~~~eA~~~~~~A~~~~~~~g~~~~aa 140 (325)
++++|+++|.+|++++...|++..++.++.++|.+|... |++++|+++|++|+++|...|+...+.
T Consensus 76 ~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~ 155 (282)
T PF14938_consen 76 KAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAA 155 (282)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHH
Confidence 678888888888888999999999999999999999998 999999999999999999999999999
Q ss_pred HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHH
Q psy10061 141 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGED-NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI 218 (325)
Q Consensus 141 ~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 218 (325)
.++.++|.++...+ |++|+..|++.+......+ ........+...+.++...|++..|...+++.....+...+ ...
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~-s~E 234 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS-SRE 234 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT-SHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-cHH
Confidence 99999999999988 9999999999988665443 23455667788999999999999999888887665443322 233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHH--HHHHHHHH
Q psy10061 219 GRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEV--QTLEKLLQ 262 (325)
Q Consensus 219 ~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~--~~l~~L~~ 262 (325)
..+...|..++-. ||.+.-.+...+++.+...+.+ .+|..+-+
T Consensus 235 ~~~~~~l~~A~~~-~D~e~f~~av~~~d~~~~ld~w~~~~l~~~k~ 279 (282)
T PF14938_consen 235 YKFLEDLLEAYEE-GDVEAFTEAVAEYDSISRLDNWKTKMLLKIKK 279 (282)
T ss_dssp HHHHHHHHHHHHT-T-CCCHHHHCHHHTTSS---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHHHHHcccCccHHHHHHHHHHHHh
Confidence 4455555555543 3433333333334444444444 34544443
No 5
>KOG1130|consensus
Probab=99.87 E-value=1e-21 Score=174.34 Aligned_cols=244 Identities=14% Similarity=0.071 Sum_probs=216.2
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI 107 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~ 107 (325)
.+++.....+|+.|.+.- ..|+.--...|.++|++|..+++|.+|+++...=+.+.+.+|+..+.|.+.-|+|
T Consensus 30 ~gdcraGv~ff~aA~qvG-------TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 30 MGDCRAGVDFFKAALQVG-------TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred ccchhhhHHHHHHHHHhc-------chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 357888899998887754 3677888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--------------------C-HHHHHHHHHHHH
Q psy10061 108 MMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL--------------------K-SDAALTLYSRAA 166 (325)
Q Consensus 108 ~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~--------------------~-~~~A~~~y~~Al 166 (325)
+++..+|.|++|+.+..+-+++.+++||....+++|.++|.+|... . ++.|.++|.+-+
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999763 1 466778888888
Q ss_pred HHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-
Q psy10061 167 DVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW- 245 (325)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~- 245 (325)
++.+..++......++.++|..|+-+|+|+.|+...+.-|+|.++.|++....+++.+||.||...|+++.|.++|...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 8888888888888899999999999999999999999999999999999888889999999999999999999999984
Q ss_pred ----cccCCChHHHHHHHHHHHHh-cCCHHHHHHHhcC
Q psy10061 246 ----GNCCEAPEVQTLEKLLQAFD-EEDPEGARQALND 278 (325)
Q Consensus 246 ----~~~~~~~e~~~l~~L~~a~~-~gd~~~~~~~~~~ 278 (325)
..-....|+.....|+++|. ..+.+.+.+...+
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34456778888888888875 6677777776665
No 6
>KOG1130|consensus
Probab=99.86 E-value=1.8e-20 Score=166.38 Aligned_cols=267 Identities=11% Similarity=0.028 Sum_probs=225.8
Q ss_pred hhhhhhHHHHHHhhchhc-------c-------ccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHH
Q psy10061 6 KKEEGMEYVKSAEKHSLS-------T-------MTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFK 71 (325)
Q Consensus 6 ~~~~~~~~~~~ae~~~~~-------~-------~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~ 71 (325)
+|..+-.|++.|-...-- + ++.-++|.+|+++..-=+.+.+. -+|-..-+..--++|+.++
T Consensus 32 dcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~-----lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 32 DCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARL-----LGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred chhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHH-----hcchhccccccccccchhh
Confidence 456667777776553320 1 11224788888888877666654 2455555566668899999
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHH
Q psy10061 72 GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELND--------------------LTDVENLAKQAATLFL 131 (325)
Q Consensus 72 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~--------------------~~eA~~~~~~A~~~~~ 131 (325)
..|.|++|+.|..+-+++.+++||....++++.|+|++|...|+ ++.|+++|..=+++.+
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987654 4567778888888888
Q ss_pred HcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 132 EQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 132 ~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 210 (325)
+.||.....+++.++|+.|.-.+ |++|+.+-+.-+.|.++-|+......++.++|.+|+-+|+++.|+++|+.++.++.
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 89999999999999999999988 99999999999999999999888888999999999999999999999999999999
Q ss_pred HcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-----cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhc
Q psy10061 211 ESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-----GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALN 277 (325)
Q Consensus 211 ~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-----~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~ 277 (325)
+++++...+..-+.+|..|....++.+|+.++++- ..-+...|.+..-.|+.++ ..|..+.+.-...
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999888889999999999999999999999994 3346778899999999998 5888887665543
No 7
>KOG1840|consensus
Probab=99.85 E-value=2.9e-18 Score=161.31 Aligned_cols=248 Identities=14% Similarity=0.149 Sum_probs=213.5
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN--KSAYHAAKHLEQ 105 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~~~ 105 (325)
.++|++|+.+++.|.....+.. +-+......+-..+|.+|..++++.+|+..|.+|+.+.+.. .+....+..+.+
T Consensus 212 ~g~~e~A~~l~k~Al~~l~k~~---G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~n 288 (508)
T KOG1840|consen 212 QGRLEKAEPLCKQALRILEKTS---GLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNN 288 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHcc---CccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4689999999999999886643 35667777778889999999999999999999999999965 477889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC-C-ChhhHHH
Q psy10061 106 AIMMCKELNDLTDVENLAKQAATLFLEQ--GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE-D-NYKQAAE 180 (325)
Q Consensus 106 ~~~~y~~~g~~~eA~~~~~~A~~~~~~~--g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~-~-~~~~~~~ 180 (325)
++.+|.+.|++++|..++++|++|+.+. -+...++..+.+++.++...+ +++|+.+|+++++++... + +....+.
T Consensus 289 La~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~ 368 (508)
T KOG1840|consen 289 LAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAK 368 (508)
T ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHH
Confidence 9999999999999999999999999883 457788899999999999887 999999999999999843 2 3447788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----ccc--CCCh
Q psy10061 181 YISRAARMCVRVKEFDKAADLIRQEIGYHQESEH--LLAIGRLAVALVLVQLARGDTVAAEKAFKEW----GNC--CEAP 252 (325)
Q Consensus 181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~--~~~~ 252 (325)
++.++|.+|..+|+|.+|.++|++++.+.++.+. ....+..+..+|..|...+.+.+|...|.++ ..| +..+
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 9999999999999999999999999999988753 4566778899999999999999999999996 233 2333
Q ss_pred HHHHHHHHHHHHh-cCCHHHHHHHhcC
Q psy10061 253 EVQTLEKLLQAFD-EEDPEGARQALND 278 (325)
Q Consensus 253 e~~~l~~L~~a~~-~gd~~~~~~~~~~ 278 (325)
--..+.+|+-+|+ .|..+++.+....
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~ 475 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEAAEELEEK 475 (508)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 4457778999995 9999998887554
No 8
>KOG1840|consensus
Probab=99.83 E-value=3.7e-18 Score=160.65 Aligned_cols=239 Identities=16% Similarity=0.182 Sum_probs=208.1
Q ss_pred cchhhhhhHHHHHHhhchh-c-----------------cccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHH
Q psy10061 4 DRKKEEGMEYVKSAEKHSL-S-----------------TMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSK 65 (325)
Q Consensus 4 ~~~~~~~~~~~~~ae~~~~-~-----------------~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~ 65 (325)
+.+.++|.++++.|-..+. . ++...++|.+|+.+|++|++.....+ +++.+..+..+.+
T Consensus 212 ~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~---G~~h~~va~~l~n 288 (508)
T KOG1840|consen 212 QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF---GEDHPAVAATLNN 288 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc---CCCCHHHHHHHHH
Confidence 3457888899988877742 1 12334799999999999999998753 6889999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCHH-HHHH
Q psy10061 66 AATCFKGAKSFQQCKEYLLKAANCYETN--KSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ-GNRE-AAST 141 (325)
Q Consensus 66 a~~~y~~~g~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~-g~~~-~aa~ 141 (325)
++.+|...|+|++|..++.+|.+|+++. .+....+..+.+++.++..++++++|..++++++.++... |... ..+.
T Consensus 289 La~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~ 368 (508)
T KOG1840|consen 289 LAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAK 368 (508)
T ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHH
Confidence 9999999999999999999999999983 3677889999999999999999999999999999999853 5444 7889
Q ss_pred HHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc-HHH
Q psy10061 142 VLEKGAKSLEELK-SDAALTLYSRAADVAHGEDN--YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH-LLA 217 (325)
Q Consensus 142 ~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~ 217 (325)
.+.++|.+|...+ +.+|.++|++|+.+.++.+. .......+.++|..|.+.+++.+|..+|.+++.|.+..|. ...
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 9999999999998 99999999999999987643 5666789999999999999999999999999999976663 334
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 218 IGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 218 ~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
....+.+|+.+|..+|+++.|.++.+..
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 5567899999999999999999998885
No 9
>KOG1586|consensus
Probab=99.83 E-value=6.7e-18 Score=139.88 Aligned_cols=237 Identities=19% Similarity=0.190 Sum_probs=164.8
Q ss_pred hhccc--cccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHH
Q psy10061 21 SLSTM--TSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYH 98 (325)
Q Consensus 21 ~~~~~--~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 98 (325)
..||+ .++++|++|.++|.+|.+.++. .++|..|..+|-+++.++.+.|+-++|...|..|..+|++. ++..
T Consensus 18 s~gF~lfgg~~k~eeAadl~~~Aan~ykl-----aK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~e 91 (288)
T KOG1586|consen 18 SGGFLLFGGSNKYEEAAELYERAANMYKL-----AKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEE 91 (288)
T ss_pred CCcccccCCCcchHHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHH
Confidence 35553 3346999999999999999987 58999999999999999999999999999999999999988 8999
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChh
Q psy10061 99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ-GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYK 176 (325)
Q Consensus 99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~-g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~ 176 (325)
++.++.++.++|.++|+|..|..++....++|+.. .|+.+++.+|...|.+|.... ...|-+|+.++..+....+.+.
T Consensus 92 Av~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~ 171 (288)
T KOG1586|consen 92 AVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYS 171 (288)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887 899999999999999998764 4444444444433333333333
Q ss_pred hHHH---------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCH
Q psy10061 177 QAAE---------------------YISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDT 235 (325)
Q Consensus 177 ~~~~---------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~ 235 (325)
.++. .+...|.++.-..+.-.+-..+++-.++.+...+ ......+-.|... ...+|.
T Consensus 172 ~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d-sREckflk~L~~a-ieE~d~ 249 (288)
T KOG1586|consen 172 KAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD-SRECKFLKDLLDA-IEEQDI 249 (288)
T ss_pred HHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc-cHHHHHHHHHHHH-HhhhhH
Confidence 3333 3444555555544444433333332222222211 1222232222222 334455
Q ss_pred HHHHHHHHhhcccCCChHHH--HHHHHHHHHh
Q psy10061 236 VAAEKAFKEWGNCCEAPEVQ--TLEKLLQAFD 265 (325)
Q Consensus 236 ~~A~~~~~~~~~~~~~~e~~--~l~~L~~a~~ 265 (325)
+.--+...+++.+.+.+.+. +|..+...+.
T Consensus 250 e~fte~vkefDsisrLD~W~ttiLlkiK~siq 281 (288)
T KOG1586|consen 250 EKFTEVVKEFDSISRLDQWKTTILLKIKKSIQ 281 (288)
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHHh
Confidence 55555555557777666664 5556666654
No 10
>KOG4626|consensus
Probab=99.81 E-value=3.6e-19 Score=165.05 Aligned_cols=209 Identities=15% Similarity=0.137 Sum_probs=139.7
Q ss_pred ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------
Q psy10061 27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAAN------------------ 88 (325)
Q Consensus 27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~------------------ 88 (325)
..|+...|+.+|.+|.++-. +|. ++|.++|++|+..+.|++|+.+|.+|+.
T Consensus 230 ~~Gei~~aiq~y~eAvkldP--------~f~---dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYye 298 (966)
T KOG4626|consen 230 AQGEIWLAIQHYEEAVKLDP--------NFL---DAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYE 298 (966)
T ss_pred hcchHHHHHHHHHHhhcCCC--------cch---HHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEec
Confidence 34678888888888876542 222 3344555555555555555555555543
Q ss_pred ----------------HHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q psy10061 89 ----------------CYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEE 152 (325)
Q Consensus 89 ----------------~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~ 152 (325)
+..... .+|+|+++...+.|+..+|+++|.+|+.+.-.. +.+++++|.+|..
T Consensus 299 qG~ldlAI~~Ykral~~~P~F~------~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h------adam~NLgni~~E 366 (966)
T KOG4626|consen 299 QGLLDLAIDTYKRALELQPNFP------DAYNNLANALKDKGSVTEAVDCYNKALRLCPNH------ADAMNNLGNIYRE 366 (966)
T ss_pred cccHHHHHHHHHHHHhcCCCch------HHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHH
Confidence 333221 245555555555555555555555555442211 2246678999988
Q ss_pred cC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q psy10061 153 LK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLA 231 (325)
Q Consensus 153 ~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~ 231 (325)
.+ ++.|..+|.+|++++... +.+.+++|.+|.++|++++|+.+|+++|.|.+ .-+.++.++|..|-.
T Consensus 367 ~~~~e~A~~ly~~al~v~p~~------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P------~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALEVFPEF------AAAHNNLASIYKQQGNLDDAIMCYKEALRIKP------TFADALSNMGNTYKE 434 (966)
T ss_pred hccchHHHHHHHHHHhhChhh------hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc------hHHHHHHhcchHHHH
Confidence 87 899999999999887653 56788999999999999999999999988742 234577888888888
Q ss_pred cCCHHHHHHHHHhh----cccCCChHHHHHHHHHHHH-hcCCHHHHHHH
Q psy10061 232 RGDTVAAEKAFKEW----GNCCEAPEVQTLEKLLQAF-DEEDPEGARQA 275 (325)
Q Consensus 232 ~gd~~~A~~~~~~~----~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~ 275 (325)
+||...|+.+|.++ +.| +.+-.+|+.++ +.|+...+.+.
T Consensus 435 ~g~v~~A~q~y~rAI~~nPt~-----AeAhsNLasi~kDsGni~~AI~s 478 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQINPTF-----AEAHSNLASIYKDSGNIPEAIQS 478 (966)
T ss_pred hhhHHHHHHHHHHHHhcCcHH-----HHHHhhHHHHhhccCCcHHHHHH
Confidence 88888888888886 444 34566777777 47776655443
No 11
>KOG4626|consensus
Probab=99.74 E-value=1.3e-16 Score=148.20 Aligned_cols=215 Identities=14% Similarity=0.120 Sum_probs=172.8
Q ss_pred hhhhhHHHHHHhhchh----cccccc------ccHHHHHHHHHHHHhhhccc---------ccCCCCCHHHHHHHHHHH-
Q psy10061 7 KEEGMEYVKSAEKHSL----STMTSD------RKKEEGMEYVKSAEKHLKTS---------LLKWKPDYDSAADDYSKA- 66 (325)
Q Consensus 7 ~~~~~~~~~~ae~~~~----~~~~~~------~~~~eA~~l~~~A~~~~~~~---------~~~~~~~~~~A~~~y~~a- 66 (325)
.-.|.+.+.||-|.=- -|...+ ..|++|...|.+|+.+.... +..-.+..+-|+++|.++
T Consensus 234 i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral 313 (966)
T KOG4626|consen 234 IWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL 313 (966)
T ss_pred HHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHH
Confidence 3455666666655322 143322 46888888888887765431 111146777777776665
Q ss_pred -------------HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 67 -------------ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ 133 (325)
Q Consensus 67 -------------~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~ 133 (325)
++..+..|+..+|.++|.+++.+.... +++++|+|++|.++|.+++|..+|.+|++++
T Consensus 314 ~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h------adam~NLgni~~E~~~~e~A~~ly~~al~v~--- 384 (966)
T KOG4626|consen 314 ELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH------ADAMNNLGNIYREQGKIEEATRLYLKALEVF--- 384 (966)
T ss_pred hcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhccchHHHHHHHHHHhhC---
Confidence 678889999999999999999887543 6799999999999999999999999999984
Q ss_pred CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 134 GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES 212 (325)
Q Consensus 134 g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 212 (325)
..-+...+++|.+|.+++ +++|+.+|++|+.|... .+++++++|.+|-.+|+.+.|+..|.+++.+-+
T Consensus 385 ---p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~------fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP-- 453 (966)
T KOG4626|consen 385 ---PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT------FADALSNMGNTYKEMGDVSAAIQCYTRAIQINP-- 453 (966)
T ss_pred ---hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch------HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc--
Confidence 455668999999999998 99999999999988543 367999999999999999999999999998632
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 213 EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 213 ~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.-+.++.+++.+|-..|+...|+..|+.+
T Consensus 454 ----t~AeAhsNLasi~kDsGni~~AI~sY~~a 482 (966)
T KOG4626|consen 454 ----TFAEAHSNLASIYKDSGNIPEAIQSYRTA 482 (966)
T ss_pred ----HHHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence 34567889999999999999999999997
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.59 E-value=3.4e-12 Score=119.10 Aligned_cols=198 Identities=15% Similarity=0.100 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10061 61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAAS 140 (325)
Q Consensus 61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa 140 (325)
..+..+|.+|...|++++|..+|.++.+.. .....++..++.+|...|++++|++.+++++....... ....+
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~ 180 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEG------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSL-RVEIA 180 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCC------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcc-hHHHH
Confidence 345566788888888998888888876541 12345778888899999999999999888776532221 12334
Q ss_pred HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHH
Q psy10061 141 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIG 219 (325)
Q Consensus 141 ~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 219 (325)
..+..+|.++...+ +++|+.+|++++++.+.. ..++..+|.+|...|++++|+.+|++++... +....
T Consensus 181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~ 249 (389)
T PRK11788 181 HFYCELAQQALARGDLDAARALLKKALAADPQC------VRASILLGDLALAQGDYAAAIEALERVEEQD-----PEYLS 249 (389)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----hhhHH
Confidence 56778888887776 999999999999875432 3467789999999999999999999998752 22233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcCh
Q psy10061 220 RLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALNDP 279 (325)
Q Consensus 220 ~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~~ 279 (325)
..+..++.+|...|++++|...++++ ....+. .....++..+ ..|+.+.+...+.+.
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~---~~~~~la~~~~~~g~~~~A~~~l~~~ 308 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEEYPGA---DLLLALAQLLEEQEGPEAAQALLREQ 308 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45678999999999999999999997 222222 2335677776 689999999988873
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.59 E-value=2.8e-13 Score=133.97 Aligned_cols=230 Identities=12% Similarity=0.028 Sum_probs=158.1
Q ss_pred ccHHHHHHHHHHHHhhhc--c---------ccc-CCCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHH
Q psy10061 29 RKKEEGMEYVKSAEKHLK--T---------SLL-KWKPDYDSAADDYSKA--------------ATCFKGAKSFQQCKEY 82 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~--~---------~~~-~~~~~~~~A~~~y~~a--------------~~~y~~~g~~~~A~~~ 82 (325)
++|++|++.|.++.+... . +.+ ...+++++|...|+++ |.++...|++++|..+
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 678888888888876421 0 101 0146666666666654 4566777888888888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHH
Q psy10061 83 LLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTL 161 (325)
Q Consensus 83 ~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~ 161 (325)
|.+++++... + ..++..+|.+|...|++++|+.+|++++++... -...+.++|.++...+ +++|+..
T Consensus 388 ~~~al~~~p~--~----~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~------~~~~~~~la~~~~~~g~~~eA~~~ 455 (615)
T TIGR00990 388 FDKALKLNSE--D----PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD------FIFSHIQLGVTQYKEGSIASSMAT 455 (615)
T ss_pred HHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc------CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888765322 1 357778888888888888888888888776332 1235678888888877 9999999
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHH-HHHHHHHHHHHHHHhcCCHHHHHH
Q psy10061 162 YSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLL-AIGRLAVALVLVQLARGDTVAAEK 240 (325)
Q Consensus 162 y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~lg~~~~~~gd~~~A~~ 240 (325)
|++++.+++.. ..++..+|.++..+|++++|+..|++++.+.+...... .....+...+.++...|++++|..
T Consensus 456 ~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~ 529 (615)
T TIGR00990 456 FRRCKKNFPEA------PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAEN 529 (615)
T ss_pred HHHHHHhCCCC------hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99988876543 35778889999999999999999999988765432211 111122333344445789999999
Q ss_pred HHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 241 AFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 241 ~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
.++++ ..-... ..++..|++++ ..|+.+.+...+.+
T Consensus 530 ~~~kAl~l~p~~--~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 530 LCEKALIIDPEC--DIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHHHhcCCCc--HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99987 222222 23566788887 68999988887766
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.57 E-value=8.7e-13 Score=130.47 Aligned_cols=220 Identities=13% Similarity=-0.028 Sum_probs=166.1
Q ss_pred HHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc
Q psy10061 34 GMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKEL 113 (325)
Q Consensus 34 A~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~ 113 (325)
+.+.|.+|.+.+.+.+-. ....+..+..+...|.++...|++++|+..|.+++.+... ...++..+|.++..+
T Consensus 306 ~~~~y~~A~~~~~~al~~-~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~------~~~~~~~la~~~~~~ 378 (615)
T TIGR00990 306 ADESYEEAARAFEKALDL-GKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR------VTQSYIKRASMNLEL 378 (615)
T ss_pred hhhhHHHHHHHHHHHHhc-CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHC
Confidence 345677888877764421 1223455677888899999999999999999999887543 245788999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHc
Q psy10061 114 NDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRV 192 (325)
Q Consensus 114 g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~ 192 (325)
|++++|+.++++++++.. .+ ..++..+|.++...+ +++|+.+|++++++.... ...+.++|.++.++
T Consensus 379 g~~~eA~~~~~~al~~~p--~~----~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~------~~~~~~la~~~~~~ 446 (615)
T TIGR00990 379 GDPDKAEEDFDKALKLNS--ED----PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF------IFSHIQLGVTQYKE 446 (615)
T ss_pred CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC------HHHHHHHHHHHHHC
Confidence 999999999999987622 12 347889999999887 999999999999876542 35678999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----cccCCCh-H-HHHHHHHHHHHh-
Q psy10061 193 KEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW----GNCCEAP-E-VQTLEKLLQAFD- 265 (325)
Q Consensus 193 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~~~~~-e-~~~l~~L~~a~~- 265 (325)
|++++|+..|++++.+.+.. ..+++.+|.++...|++++|++.|+++ +...... . ...+...+..+.
T Consensus 447 g~~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 447 GSIASSMATFRRCKKNFPEA------PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 99999999999999864322 246678999999999999999999997 2221111 1 111222222333
Q ss_pred cCCHHHHHHHhcC
Q psy10061 266 EEDPEGARQALND 278 (325)
Q Consensus 266 ~gd~~~~~~~~~~ 278 (325)
.|+.+.+...+++
T Consensus 521 ~~~~~eA~~~~~k 533 (615)
T TIGR00990 521 KQDFIEAENLCEK 533 (615)
T ss_pred hhhHHHHHHHHHH
Confidence 5888888888776
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.57 E-value=1.6e-12 Score=121.23 Aligned_cols=226 Identities=14% Similarity=0.113 Sum_probs=172.3
Q ss_pred ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061 27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA 106 (325)
Q Consensus 27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~ 106 (325)
..+++++|+.+|.++.+.. ++ -.+.+..++.++...|++++|...+.+++..- ..........+..+
T Consensus 47 ~~~~~~~A~~~~~~al~~~--------p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~L 113 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD--------PE---TVELHLALGNLFRRRGEVDRAIRIHQNLLSRP--DLTREQRLLALQEL 113 (389)
T ss_pred hcCChHHHHHHHHHHHhcC--------cc---cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC--CCCHHHHHHHHHHH
Confidence 3478999999999988753 21 24677889999999999999999998876521 11223345688999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy10061 107 IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA 185 (325)
Q Consensus 107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l 185 (325)
|.+|...|++++|+.+++++++. . .....++..++.++...+ +++|+..+++++........ ......+..+
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~---~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~l 186 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDE---G---DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR-VEIAHFYCEL 186 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcC---C---cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcch-HHHHHHHHHH
Confidence 99999999999999999998764 1 123456888999998887 99999999998876543222 2234467789
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHH-
Q psy10061 186 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAF- 264 (325)
Q Consensus 186 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~- 264 (325)
|.++..+|++++|+.+|++++.+.+.. ..++..+|.++...|++++|.+.|+++....+.....++..|+.++
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~ 260 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAADPQC------VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQ 260 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHCcCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH
Confidence 999999999999999999998864321 2356779999999999999999999982222222234566778887
Q ss_pred hcCCHHHHHHHhcC
Q psy10061 265 DEEDPEGARQALND 278 (325)
Q Consensus 265 ~~gd~~~~~~~~~~ 278 (325)
..|+.+.+...+++
T Consensus 261 ~~g~~~~A~~~l~~ 274 (389)
T PRK11788 261 ALGDEAEGLEFLRR 274 (389)
T ss_pred HcCCHHHHHHHHHH
Confidence 68999999888776
No 16
>KOG1585|consensus
Probab=99.55 E-value=2.1e-12 Score=108.20 Aligned_cols=230 Identities=19% Similarity=0.132 Sum_probs=168.6
Q ss_pred hhhhhhHHHHHHhhchh-cc-------------ccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHH
Q psy10061 6 KKEEGMEYVKSAEKHSL-ST-------------MTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFK 71 (325)
Q Consensus 6 ~~~~~~~~~~~ae~~~~-~~-------------~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~ 71 (325)
|.+++.+++++.++--+ -| |+...+|++|...+.+|.+.... +..+-+|+..|++++.+.+
T Consensus 8 ki~ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEn-----nrslfhAAKayEqaamLak 82 (308)
T KOG1585|consen 8 KISEADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN-----NRSLFHAAKAYEQAAMLAK 82 (308)
T ss_pred HHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHHHHHH
Confidence 47888888888887422 11 12234566666666666555544 4677888899999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q psy10061 72 GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLE 151 (325)
Q Consensus 72 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~ 151 (325)
....+.++.++|++|..+|.+.|.+..++.++..++.+... .++++|+..|++++.++...+....+...+..++.++.
T Consensus 83 e~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~len-v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 83 ELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALEN-VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV 161 (308)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence 99999999999999999999999999999999999988665 68999999999999999999999999999999999999
Q ss_pred ccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q psy10061 152 ELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQL 230 (325)
Q Consensus 152 ~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~ 230 (325)
..+ +++|...+.+-..+.............+.....+|.-..+|..|..+|+..-.+-.-. .....+.+.++... +
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~--~sed~r~lenLL~a-y 238 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL--KSEDSRSLENLLTA-Y 238 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc--ChHHHHHHHHHHHH-h
Confidence 887 8888888877777766655555555556555566666779999998887643321111 12233444444444 4
Q ss_pred hcCCHHHHHHHHHh
Q psy10061 231 ARGDTVAAEKAFKE 244 (325)
Q Consensus 231 ~~gd~~~A~~~~~~ 244 (325)
..||.++..+.+..
T Consensus 239 d~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 239 DEGDIEEIKKVLSS 252 (308)
T ss_pred ccCCHHHHHHHHcC
Confidence 56777777666544
No 17
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.48 E-value=1.3e-11 Score=105.57 Aligned_cols=201 Identities=17% Similarity=0.165 Sum_probs=156.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 54 PDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ 133 (325)
Q Consensus 54 ~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~ 133 (325)
.+.+..+..+..++.++...|++++|...+.+++..... ...++..+|.+|...|++++|+.++++++++....
T Consensus 25 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 98 (234)
T TIGR02521 25 TDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD------DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN 98 (234)
T ss_pred ccCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 455667888999999999999999999999999766422 24678889999999999999999999998764322
Q ss_pred CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 134 GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES 212 (325)
Q Consensus 134 g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 212 (325)
...+.++|.++...+ +++|+.+|++++.... .......+..+|.++...|++++|..+|.+++...+..
T Consensus 99 ------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 168 (234)
T TIGR02521 99 ------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168 (234)
T ss_pred ------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 246788899998887 9999999999987422 12223567789999999999999999999998864321
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 213 EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 213 ~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
...+..++.++...|++++|...++++ ..... ....+..++..+ ..|+.+.+...++.
T Consensus 169 ------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 169 ------PESLLELAELYYLRGQYKDARAYLERYQQTYNQ--TAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred ------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 235678999999999999999999998 33222 233344455555 58888888776543
No 18
>KOG1941|consensus
Probab=99.46 E-value=2e-11 Score=107.71 Aligned_cols=212 Identities=15% Similarity=0.093 Sum_probs=184.6
Q ss_pred ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC--ChH--HHHHHHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNK--SAY--HAAKHLE 104 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~--~~~--~aa~~~~ 104 (325)
+-++++++.|++|.++... .+|..--...|.-+|.+|..++++++|+.+..+|+++.+..+ ++. --+-++.
T Consensus 136 s~fq~~Lesfe~A~~~A~~-----~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ly 210 (518)
T KOG1941|consen 136 SVFQKALESFEKALRYAHN-----NDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLY 210 (518)
T ss_pred HHHHHHHHHHHHHHHHhhc-----cCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHH
Confidence 3589999999999998875 355555567888999999999999999999999999999775 332 2345667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHH
Q psy10061 105 QAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYIS 183 (325)
Q Consensus 105 ~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~ 183 (325)
.++..++.+|+...|.++.++|..+..+.||....+.++.-+|.||...+ .+.|..-|++|..+....||.....+++.
T Consensus 211 hmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~ 290 (518)
T KOG1941|consen 211 HMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALD 290 (518)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 78888999999999999999999999999999999999999999999887 99999999999999999999998888998
Q ss_pred HHHHHHHHcCCHHH-----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 184 RAARMCVRVKEFDK-----AADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 184 ~lg~~~~~~g~~~~-----A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..+.......-..+ |++.-++.++++.++|....+-+.+..++.+|..+|+-++-...+.++
T Consensus 291 g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra 357 (518)
T KOG1941|consen 291 GAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRA 357 (518)
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 88887766654444 999999999999999988888889999999999999888877777764
No 19
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.44 E-value=2.9e-11 Score=100.85 Aligned_cols=201 Identities=15% Similarity=0.173 Sum_probs=164.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 54 PDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ 133 (325)
Q Consensus 54 ~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~ 133 (325)
.+...+++...++|.-|...|++..|..-+++|++.-.+. ..++.-++.+|...|+.+.|-+.|++|+.+-...
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~------~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~ 102 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY------YLAHLVRAHYYQKLGENDLADESYRKALSLAPNN 102 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc
Confidence 5678999999999999999999999999999999876543 4578888999999999999999999999998888
Q ss_pred CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 134 GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES 212 (325)
Q Consensus 134 g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 212 (325)
|+ +++|-|..+=..+ |++|..++++|+. ...+...+.++.|+|.+..++|+.+.|..+|+++|++.++.
T Consensus 103 Gd------VLNNYG~FLC~qg~~~eA~q~F~~Al~----~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~ 172 (250)
T COG3063 103 GD------VLNNYGAFLCAQGRPEEAMQQFERALA----DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF 172 (250)
T ss_pred cc------hhhhhhHHHHhCCChHHHHHHHHHHHh----CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC
Confidence 88 6899999888777 9999999999985 23444556799999999999999999999999999986554
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 213 EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 213 ~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
.. ....+...++..||+..|.-+++++ .... -.+..|--.++.- ..||.+.+...-.+
T Consensus 173 ~~------~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~--~~A~sL~L~iriak~~gd~~~a~~Y~~q 232 (250)
T COG3063 173 PP------ALLELARLHYKAGDYAPARLYLERYQQRGG--AQAESLLLGIRIAKRLGDRAAAQRYQAQ 232 (250)
T ss_pred Ch------HHHHHHHHHHhcccchHHHHHHHHHHhccc--ccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 32 3356788899999999999999998 3332 2233343334433 58888887776544
No 20
>KOG2003|consensus
Probab=99.43 E-value=3.1e-11 Score=109.25 Aligned_cols=237 Identities=16% Similarity=0.114 Sum_probs=174.1
Q ss_pred cccccccHHHHHHHHHHHHhhhc--------ccc-cCCCCCHHHHHHHHHHHH--------------HHHHhcCCHHHHH
Q psy10061 24 TMTSDRKKEEGMEYVKSAEKHLK--------TSL-LKWKPDYDSAADDYSKAA--------------TCFKGAKSFQQCK 80 (325)
Q Consensus 24 ~~~~~~~~~eA~~l~~~A~~~~~--------~~~-~~~~~~~~~A~~~y~~a~--------------~~y~~~g~~~~A~ 80 (325)
|+-++.++.+|.++-..|...-+ ++- -.-.+|++.|++.|..+. ..+..+|+.++|+
T Consensus 465 flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeal 544 (840)
T KOG2003|consen 465 FLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEAL 544 (840)
T ss_pred HHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHH
Confidence 55556678888888888765432 111 111588888888888763 4567889999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHH
Q psy10061 81 EYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAAL 159 (325)
Q Consensus 81 ~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~ 159 (325)
++|.+.-.+... -+.++.+++++|..+.++.+|++++-++..+.. .|+ ..+.++|.+|.+.+ -.+|.
T Consensus 545 d~f~klh~il~n------n~evl~qianiye~led~aqaie~~~q~~slip--~dp----~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 545 DCFLKLHAILLN------NAEVLVQIANIYELLEDPAQAIELLMQANSLIP--NDP----AILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HHHHHHHHHHHh------hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCC--CCH----HHHHHHHHHhhcccchhhhh
Confidence 999887777654 367899999999999999999999999876533 233 36899999999987 89999
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy10061 160 TLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAE 239 (325)
Q Consensus 160 ~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~ 239 (325)
+|+-.....|.-. .++..++|..|+...-+++|+.+|+++.-+-+ ... .-.+-++.|+...|+|.+|.
T Consensus 613 q~~ydsyryfp~n------ie~iewl~ayyidtqf~ekai~y~ekaaliqp-----~~~-kwqlmiasc~rrsgnyqka~ 680 (840)
T KOG2003|consen 613 QCHYDSYRYFPCN------IETIEWLAAYYIDTQFSEKAINYFEKAALIQP-----NQS-KWQLMIASCFRRSGNYQKAF 680 (840)
T ss_pred hhhhhcccccCcc------hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc-----cHH-HHHHHHHHHHHhcccHHHHH
Confidence 9998777766543 56888999999999999999999999865422 111 12245889999999999999
Q ss_pred HHHHhh-cccCCChHH-HHHHHHHHHHhcCCHHHHHHHhcC-hhhhcc
Q psy10061 240 KAFKEW-GNCCEAPEV-QTLEKLLQAFDEEDPEGARQALND-PFIKHM 284 (325)
Q Consensus 240 ~~~~~~-~~~~~~~e~-~~l~~L~~a~~~gd~~~~~~~~~~-~~~~~l 284 (325)
+.|++. ..|...-+| ++|.+|+.-+...|..+..+-+++ ..++.+
T Consensus 681 d~yk~~hrkfpedldclkflvri~~dlgl~d~key~~klek~eki~ei 728 (840)
T KOG2003|consen 681 DLYKDIHRKFPEDLDCLKFLVRIAGDLGLKDAKEYADKLEKAEKIKEI 728 (840)
T ss_pred HHHHHHHHhCccchHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Confidence 999998 777655555 566555554445555555555554 334433
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.42 E-value=7.4e-11 Score=117.23 Aligned_cols=107 Identities=14% Similarity=0.122 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHH
Q psy10061 158 ALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVA 237 (325)
Q Consensus 158 A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~ 237 (325)
|+.+|++++.+.... ..++..+|.++..+|++++|+.++++++.+.+.. ..++..+|.++...|++++
T Consensus 269 A~~~~~~Al~l~P~~------~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~------~~a~~~La~~l~~~G~~~e 336 (656)
T PRK15174 269 AAEHWRHALQFNSDN------VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL------PYVRAMYARALRQVGQYTA 336 (656)
T ss_pred HHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHH
Confidence 455555555543321 2466666777777777777777777666543221 1234556777777777777
Q ss_pred HHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 238 AEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 238 A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
|...|++. ...... ......++.++ ..|+.+++...+++
T Consensus 337 A~~~l~~al~~~P~~--~~~~~~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 337 ASDEFVQLAREKGVT--SKWNRYAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred HHHHHHHHHHhCccc--hHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777775 221111 12233344554 47777777777665
No 22
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.41 E-value=1.3e-10 Score=122.53 Aligned_cols=233 Identities=14% Similarity=0.098 Sum_probs=152.4
Q ss_pred cccHHHHHHHHHHHHhhhccc------c---cCCCCCHHHHHHHH-----------------------HHHHHHHHhcCC
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTS------L---LKWKPDYDSAADDY-----------------------SKAATCFKGAKS 75 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~------~---~~~~~~~~~A~~~y-----------------------~~a~~~y~~~g~ 75 (325)
.+++++|+++|+++.+..... + +. ..++++|...+ ...+.++...|+
T Consensus 398 ~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~ 476 (1157)
T PRK11447 398 RKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGK 476 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCC
Confidence 468999999999988764321 0 11 23444444333 234566777888
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------------------
Q psy10061 76 FQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATL-------------------------- 129 (325)
Q Consensus 76 ~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~-------------------------- 129 (325)
+++|+.+|.+++.+... + ..++..++.+|...|++++|+..+++++..
T Consensus 477 ~~eA~~~~~~Al~~~P~--~----~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~ 550 (1157)
T PRK11447 477 WAQAAELQRQRLALDPG--S----VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALA 550 (1157)
T ss_pred HHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 88998888888776543 1 235667777777778888877777776542
Q ss_pred --------------------------------HHHcCCHHHHHH----------HHHHHHHHHhccC-HHHHHHHHHHHH
Q psy10061 130 --------------------------------FLEQGNREAAST----------VLEKGAKSLEELK-SDAALTLYSRAA 166 (325)
Q Consensus 130 --------------------------------~~~~g~~~~aa~----------~l~~lg~~~~~~~-~~~A~~~y~~Al 166 (325)
+...|++..+.. .+..+|.++...+ +++|+.+|++++
T Consensus 551 ~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al 630 (1157)
T PRK11447 551 HLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVL 630 (1157)
T ss_pred HHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111222222222 2334666776666 888888888888
Q ss_pred HHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-
Q psy10061 167 DVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW- 245 (325)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~- 245 (325)
.+.... ..++..++.+|...|++++|+..|++++...+. ...++..+|.++...|++++|...|+++
T Consensus 631 ~~~P~~------~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~al 698 (1157)
T PRK11447 631 TREPGN------ADARLGLIEVDIAQGDLAAARAQLAKLPATAND------SLNTQRRVALAWAALGDTAAAQRTFNRLI 698 (1157)
T ss_pred HhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 764432 356778888888888888888888876653211 1134566888888999999999999987
Q ss_pred cccC---C-ChHHHHHHHHHHHH-hcCCHHHHHHHhcCh
Q psy10061 246 GNCC---E-APEVQTLEKLLQAF-DEEDPEGARQALNDP 279 (325)
Q Consensus 246 ~~~~---~-~~e~~~l~~L~~a~-~~gd~~~~~~~~~~~ 279 (325)
.... . .....++..+++.+ ..|+++.+...+++.
T Consensus 699 ~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 699 PQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred hhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2221 1 12345566777777 589999888887763
No 23
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.40 E-value=5e-10 Score=115.73 Aligned_cols=245 Identities=15% Similarity=0.043 Sum_probs=190.3
Q ss_pred ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061 27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA 106 (325)
Q Consensus 27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~ 106 (325)
..+++++|..++.+|...... .+...........+.++...|++++|...+.++....+..++....+.++.++
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~------~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPL------TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCC------ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 356899999999999875432 23333444566788889999999999999999999999999988888899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHH
Q psy10061 107 IMMCKELNDLTDVENLAKQAATLFLEQGNR--EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYIS 183 (325)
Q Consensus 107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~--~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~ 183 (325)
+.++...|++++|..++++++.+....+.. ...+..+..+|.++...+ +++|..++++++.+....+.. ....++.
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~-~~~~~~~ 616 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ-QQLQCLA 616 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch-HHHHHHH
Confidence 999999999999999999999998887642 222344566788777777 999999999999998765532 3445777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHH---------------------------------------HHHHHHHH
Q psy10061 184 RAARMCVRVKEFDKAADLIRQEIGYHQESEHLL---------------------------------------AIGRLAVA 224 (325)
Q Consensus 184 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------------------~~~~~~~~ 224 (325)
.+|.++...|++++|...+.+++.+....+... .....+..
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 696 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence 899999999999999999999987654322100 00011356
Q ss_pred HHHHHHhcCCHHHHHHHHHhh-c---cc-CCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 225 LVLVQLARGDTVAAEKAFKEW-G---NC-CEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 225 lg~~~~~~gd~~~A~~~~~~~-~---~~-~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
++.++...|++.+|...++++ . .. ......+++..++.++ ..|+.+++..++.+
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888899999999999999996 2 22 2334566777788887 69999999888876
No 24
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=5.5e-11 Score=101.59 Aligned_cols=186 Identities=15% Similarity=0.075 Sum_probs=147.3
Q ss_pred ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061 27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA 106 (325)
Q Consensus 27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~ 106 (325)
..+++++|++.+.++.+... + ....+...+.++...|++++|...|.+++...... ...+.++
T Consensus 43 ~~~~~~~A~~~~~~~l~~~p--------~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~ 105 (234)
T TIGR02521 43 EQGDLEVAKENLDKALEHDP--------D---DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN------GDVLNNY 105 (234)
T ss_pred HCCCHHHHHHHHHHHHHhCc--------c---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHH
Confidence 35689999999999876532 1 13567778999999999999999999998875432 2478889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy10061 107 IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA 185 (325)
Q Consensus 107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l 185 (325)
+.+|...|++++|+.++++++.... .......+..+|.++...+ +++|..++.+++...... ...+..+
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l 175 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPL----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR------PESLLEL 175 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------hHHHHHH
Confidence 9999999999999999999986421 2233456788899998887 999999999999875432 3467789
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 186 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 186 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
|.++...|++++|+.++++++.+.+ .. ...+..++.++...|+.+.|..+.+..
T Consensus 176 a~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 176 AELYYLRGQYKDARAYLERYQQTYN--QT----AESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999999988621 11 233456788999999999999887764
No 25
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.40 E-value=7e-11 Score=120.52 Aligned_cols=251 Identities=15% Similarity=0.117 Sum_probs=135.5
Q ss_pred hhhhhhHHHHHHhhchh----ccc------cccccHHHHHHHHHHHHhhhcccc---------cCCCCCHHHHHHHHHHH
Q psy10061 6 KKEEGMEYVKSAEKHSL----STM------TSDRKKEEGMEYVKSAEKHLKTSL---------LKWKPDYDSAADDYSKA 66 (325)
Q Consensus 6 ~~~~~~~~~~~ae~~~~----~~~------~~~~~~~eA~~l~~~A~~~~~~~~---------~~~~~~~~~A~~~y~~a 66 (325)
++.++.+++.++-+... .|+ ...+++++|++.|.++.+...... ....+++++|...|.++
T Consensus 582 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (899)
T TIGR02917 582 QLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRA 661 (899)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45666666666544322 132 233577777777777765443210 11146667776666654
Q ss_pred --------------HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---
Q psy10061 67 --------------ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATL--- 129 (325)
Q Consensus 67 --------------~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~--- 129 (325)
+.++...|++++|...+......... ....+..+|.+|...|++++|+..|++++..
T Consensus 662 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 735 (899)
T TIGR02917 662 LELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK------AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS 735 (899)
T ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC------ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence 34556667777777666655433211 1234555666666666666666666665543
Q ss_pred ----------HHHcCCHHHHH--------------HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHH
Q psy10061 130 ----------FLEQGNREAAS--------------TVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISR 184 (325)
Q Consensus 130 ----------~~~~g~~~~aa--------------~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~ 184 (325)
+...|++..+. .++..+|.+|...+ +++|+.+|+++++..... ..++..
T Consensus 736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~ 809 (899)
T TIGR02917 736 SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN------AVVLNN 809 (899)
T ss_pred chHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC------HHHHHH
Confidence 12222222222 23444555555554 666666666666543321 235556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHH
Q psy10061 185 AARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQA 263 (325)
Q Consensus 185 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a 263 (325)
+|.++...|+ ++|+.++++++.+.+. + ..++..+|.++...|++++|.++|+++ ..... ...+...++.+
T Consensus 810 l~~~~~~~~~-~~A~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~ 880 (899)
T TIGR02917 810 LAWLYLELKD-PRALEYAEKALKLAPN--I----PAILDTLGWLLVEKGEADRALPLLRKAVNIAPE--AAAIRYHLALA 880 (899)
T ss_pred HHHHHHhcCc-HHHHHHHHHHHhhCCC--C----cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHH
Confidence 6666666666 6666666666654221 1 123445666677777777777777776 22211 23445556666
Q ss_pred H-hcCCHHHHHHHhc
Q psy10061 264 F-DEEDPEGARQALN 277 (325)
Q Consensus 264 ~-~~gd~~~~~~~~~ 277 (325)
+ ..|+.+.+...++
T Consensus 881 ~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 881 LLATGRKAEARKELD 895 (899)
T ss_pred HHHcCCHHHHHHHHH
Confidence 5 4677666666554
No 26
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.39 E-value=8.2e-11 Score=124.10 Aligned_cols=225 Identities=16% Similarity=0.096 Sum_probs=154.3
Q ss_pred ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHH--------HH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYH--------AA 100 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~--------aa 100 (325)
+++++|+.+|+++.+.. ++. .+.+..+|.+|...|++++|+.+|.+++++......... ..
T Consensus 283 g~~~~A~~~l~~aL~~~--------P~~---~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 283 GQGGKAIPELQQAVRAN--------PKD---SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred CCHHHHHHHHHHHHHhC--------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 56677777777666543 211 245566788999999999999999999987664432110 11
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChh-h-
Q psy10061 101 KHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYK-Q- 177 (325)
Q Consensus 101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~-~- 177 (325)
......+.++...|++++|+.+|++++.+.. .+ ..++..+|.++...+ +++|+.+|++++.+........ .
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P--~~----~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L 425 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVDN--TD----SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGL 425 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 2334568888999999999999999988732 12 246778899988887 9999999999987654421100 0
Q ss_pred ----------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Q psy10061 178 ----------------------------------AAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAV 223 (325)
Q Consensus 178 ----------------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 223 (325)
....+..+|.++...|++++|+.+|++++.+.+.. ..+++
T Consensus 426 ~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~------~~~~~ 499 (1157)
T PRK11447 426 ANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS------VWLTY 499 (1157)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHH
Confidence 01234456777888899999999999988764321 23567
Q ss_pred HHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 224 ALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 224 ~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
.++.+|...|++++|...|+++ .......+. ...++..+ ..++.+++...+++
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~--~~a~al~l~~~~~~~~Al~~l~~ 554 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQKPNDPEQ--VYAYGLYLSGSDRDRAALAHLNT 554 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHhCCCHHHHHHHHHh
Confidence 8999999999999999999997 333333332 33333333 47778877777654
No 27
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.38 E-value=1.6e-10 Score=114.79 Aligned_cols=125 Identities=16% Similarity=0.083 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHH
Q psy10061 141 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIG 219 (325)
Q Consensus 141 ~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 219 (325)
.++..+|.++...+ +++|+.++++++.+.... ..++..+|.++...|++++|+..|++++...+. . .
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~------~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-----~-~ 352 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLATHPDL------PYVRAMYARALRQVGQYTAASDEFVQLAREKGV-----T-S 352 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-----c-h
Confidence 35667788888777 999999999998875432 246677899999999999999999888775321 1 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh----cccCCChHHHHHHHHHHHHh-cCCHHHHHHHhcC
Q psy10061 220 RLAVALVLVQLARGDTVAAEKAFKEW----GNCCEAPEVQTLEKLLQAFD-EEDPEGARQALND 278 (325)
Q Consensus 220 ~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~~~~~e~~~l~~L~~a~~-~gd~~~~~~~~~~ 278 (325)
..+..+|.++...|++++|...|+++ +......-..+...+.+++. .+.+ .-+..|..
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~-~~~~~W~~ 415 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLP-PERLDWAW 415 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCc-cchhhHHH
Confidence 23455688888999999999999986 33222223346667777775 4433 33334555
No 28
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.37 E-value=3.6e-11 Score=100.26 Aligned_cols=163 Identities=17% Similarity=0.068 Sum_probs=132.8
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCC
Q psy10061 95 SAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGED 173 (325)
Q Consensus 95 ~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~ 173 (325)
+...++.+...+|.-|...|++..|...+++|+++-.. -..++.-++.+|+..+ .+.|-+.|++|+.+....|
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G 103 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS------YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG 103 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc
Confidence 56788999999999999999999999999999876332 2336788999999998 9999999999999988876
Q ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----cccC
Q psy10061 174 NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW----GNCC 249 (325)
Q Consensus 174 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~~ 249 (325)
++++|.|..++.+|+|++|..+|++|+.. ..+...+..+.|+|.|-+.+|++++|.++|++. +.+.
T Consensus 104 ------dVLNNYG~FLC~qg~~~eA~q~F~~Al~~----P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~ 173 (250)
T COG3063 104 ------DVLNNYGAFLCAQGRPEEAMQQFERALAD----PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP 173 (250)
T ss_pred ------chhhhhhHHHHhCCChHHHHHHHHHHHhC----CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence 48999999999999999999999999873 334456678899999999999999999999997 4443
Q ss_pred CChHHHHHHHHHHH-HhcCCHHHHHHHhcC
Q psy10061 250 EAPEVQTLEKLLQA-FDEEDPEGARQALND 278 (325)
Q Consensus 250 ~~~e~~~l~~L~~a-~~~gd~~~~~~~~~~ 278 (325)
. .+..+.+. ++.||-..++..+.+
T Consensus 174 ~-----~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 174 P-----ALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred h-----HHHHHHHHHHhcccchHHHHHHHH
Confidence 2 23344444 356766666665543
No 29
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.33 E-value=2.2e-10 Score=99.54 Aligned_cols=183 Identities=12% Similarity=0.035 Sum_probs=142.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 54 PDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ 133 (325)
Q Consensus 54 ~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~ 133 (325)
+..+...+.+...|..+...|++++|...|.+++..+... .....++..+|.+|...|++++|+..|+++++.+...
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~ 103 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS---PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH 103 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence 3556777788888999999999999999999987766432 2345678899999999999999999999999876644
Q ss_pred CCHHHHHHHHHHHHHHHhcc--------C-HHHHHHHHHHHHHHHhcCCChhhHH-----------HHHHHHHHHHHHcC
Q psy10061 134 GNREAASTVLEKGAKSLEEL--------K-SDAALTLYSRAADVAHGEDNYKQAA-----------EYISRAARMCVRVK 193 (325)
Q Consensus 134 g~~~~aa~~l~~lg~~~~~~--------~-~~~A~~~y~~Al~~~~~~~~~~~~~-----------~~~~~lg~~~~~~g 193 (325)
... ..++..+|.++... + +++|++.|++++..++.......+. .....+|.+|...|
T Consensus 104 ~~~---~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g 180 (235)
T TIGR03302 104 PDA---DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG 180 (235)
T ss_pred Cch---HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 432 34577778877653 4 8999999999998877653321111 12246788999999
Q ss_pred CHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 194 EFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 194 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
++.+|+..|++++..++... ....++..+|.++...|++.+|..+++..
T Consensus 181 ~~~~A~~~~~~al~~~p~~~---~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 181 AYVAAINRFETVVENYPDTP---ATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred ChHHHHHHHHHHHHHCCCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999988754421 23457789999999999999999998876
No 30
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.31 E-value=8.1e-10 Score=112.76 Aligned_cols=131 Identities=11% Similarity=0.014 Sum_probs=68.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHH
Q psy10061 103 LEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEY 181 (325)
Q Consensus 103 ~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~ 181 (325)
+..++.+|...|++++|+.++++++..... -...+..+|.++...+ +++|+.+|+++++..... ..+
T Consensus 570 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~ 637 (899)
T TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAADAAPD------SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS------ALA 637 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHH
Confidence 344455555555555555555554322100 0123445555665555 677777777666543221 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc--------------c--------------HHHHHHHHHHHHHHHHhcC
Q psy10061 182 ISRAARMCVRVKEFDKAADLIRQEIGYHQESE--------------H--------------LLAIGRLAVALVLVQLARG 233 (325)
Q Consensus 182 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--------------~--------------~~~~~~~~~~lg~~~~~~g 233 (325)
+..+|.++...|++++|+.+|++++.+.+... + .......+..+|.++...|
T Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 717 (899)
T TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQK 717 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCC
Confidence 55666666666666666666666655422100 0 0001223445666667777
Q ss_pred CHHHHHHHHHhh
Q psy10061 234 DTVAAEKAFKEW 245 (325)
Q Consensus 234 d~~~A~~~~~~~ 245 (325)
++++|...|+++
T Consensus 718 ~~~~A~~~~~~~ 729 (899)
T TIGR02917 718 DYPAAIQAYRKA 729 (899)
T ss_pred CHHHHHHHHHHH
Confidence 777777777665
No 31
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.30 E-value=4e-10 Score=115.40 Aligned_cols=223 Identities=9% Similarity=-0.030 Sum_probs=151.7
Q ss_pred ccHHHHHHHHHHHHhhhccc-----c---cCCCCCHHHHHHHHHHH-------------HHHHHhcCCHHHHHHHHHHHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTS-----L---LKWKPDYDSAADDYSKA-------------ATCFKGAKSFQQCKEYLLKAA 87 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~-----~---~~~~~~~~~A~~~y~~a-------------~~~y~~~g~~~~A~~~~~~a~ 87 (325)
+++.+|+..+.++....... + ..-.+++++|...|.++ |.++...|++++|..+|.+++
T Consensus 490 ~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL 569 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAE 569 (987)
T ss_pred CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46666777666665443221 0 00135556665555543 345667788888888888877
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHH
Q psy10061 88 NCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAA 166 (325)
Q Consensus 88 ~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al 166 (325)
..... . ...+..++.....+|++++|+.+|++++.+.. + ...+.++|.++...+ +++|+.+|++++
T Consensus 570 ~l~P~--~----~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P---~----~~a~~~LA~~l~~lG~~deA~~~l~~AL 636 (987)
T PRK09782 570 QRGLG--D----NALYWWLHAQRYIPGQPELALNDLTRSLNIAP---S----ANAYVARATIYRQRHNVPAAVSDLRAAL 636 (987)
T ss_pred hcCCc--c----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---C----HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 54311 1 12333445555566999999999999886633 1 356889999999888 999999999999
Q ss_pred HHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-
Q psy10061 167 DVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW- 245 (325)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~- 245 (325)
.+.+.. ..++.++|.++...|++++|+.+|++++.+.+. ...++.++|.++...|+++.|+.+|+++
T Consensus 637 ~l~Pd~------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~------~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 637 ELEPNN------SNYQAALGYALWDSGDIAQSREMLERAHKGLPD------DPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 886543 358889999999999999999999999887432 1246789999999999999999999997
Q ss_pred cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 246 GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 246 ~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
..-. +.+.+....+... ...+.+.+.+..++
T Consensus 705 ~l~P--~~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 705 DDID--NQALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred hcCC--CCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 2211 1133444455554 35556666665554
No 32
>PRK12370 invasion protein regulator; Provisional
Probab=99.29 E-value=6.1e-10 Score=108.78 Aligned_cols=183 Identities=16% Similarity=0.059 Sum_probs=134.3
Q ss_pred ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHHhcCChHHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKG---------AKSFQQCKEYLLKAANCYETNKSAYHA 99 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~---------~g~~~~A~~~~~~a~~~~~~~~~~~~a 99 (325)
+.+++|+.+|++|.+.- +++. ..|..++.+|.. .+++++|..++.+++++....
T Consensus 275 ~~~~~A~~~~~~Al~ld--------P~~a---~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~------ 337 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS--------PNSI---APYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN------ 337 (553)
T ss_pred HHHHHHHHHHHHHHhcC--------CccH---HHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC------
Confidence 45778888888876544 3332 234455555442 345789999999988775432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061 100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA 178 (325)
Q Consensus 100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~ 178 (325)
+.++..+|.++...|++++|+.+|++|+++.-. -+.++..+|.++...+ +++|+.++++++++.....
T Consensus 338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~----- 406 (553)
T PRK12370 338 PQALGLLGLINTIHSEYIVGSLLFKQANLLSPI------SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA----- 406 (553)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-----
Confidence 356788899999999999999999999877321 1336788899999887 9999999999998865531
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.+...++.++...|++++|+..+++++.... + .....+..+|.++...|++++|...+++.
T Consensus 407 -~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~----p-~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 407 -AAGITKLWITYYHTGIDDAIRLGDELRSQHL----Q-DNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred -hhHHHHHHHHHhccCHHHHHHHHHHHHHhcc----c-cCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 1233455567778999999999999876421 1 11235677999999999999999999986
No 33
>KOG1155|consensus
Probab=99.28 E-value=6.2e-10 Score=101.22 Aligned_cols=204 Identities=16% Similarity=0.078 Sum_probs=157.0
Q ss_pred cccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q psy10061 24 TMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHL 103 (325)
Q Consensus 24 ~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~ 103 (325)
|++..+..++|..+|+.|+++.++ +.. +..-.|.-|...++.+.|+++|++|+++... | -+++
T Consensus 339 YYSlr~eHEKAv~YFkRALkLNp~--------~~~---aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~--D----yRAW 401 (559)
T KOG1155|consen 339 YYSLRSEHEKAVMYFKRALKLNPK--------YLS---AWTLMGHEYVEMKNTHAAIESYRRAVDINPR--D----YRAW 401 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCcc--------hhH---HHHHhhHHHHHhcccHHHHHHHHHHHhcCch--h----HHHH
Confidence 345556789999999999988754 232 3446788899999999999999999998764 2 2478
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHH
Q psy10061 104 EQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYI 182 (325)
Q Consensus 104 ~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~ 182 (325)
..+|..|.-++.+-=|+-+|++|..+ +-.|. +.+.-+|.+|+..+ .++|++||.+|+..-... ..++
T Consensus 402 YGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDs----Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dte------~~~l 469 (559)
T KOG1155|consen 402 YGLGQAYEIMKMHFYALYYFQKALEL--KPNDS----RLWVALGECYEKLNRLEEAIKCYKRAILLGDTE------GSAL 469 (559)
T ss_pred hhhhHHHHHhcchHHHHHHHHHHHhc--CCCch----HHHHHHHHHHHHhccHHHHHHHHHHHHhccccc------hHHH
Confidence 88999999999999999999999865 22332 36889999999988 999999999998765432 3588
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccC-CChHHHHHH
Q psy10061 183 SRAARMCVRVKEFDKAADLIRQEIGYHQESE---HLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCC-EAPEVQTLE 258 (325)
Q Consensus 183 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~-~~~e~~~l~ 258 (325)
..||.+|-+++++.+|..+|++-++.....| +....+.+ -++.-+...+|+++|..+..+...+. .-+|++.|.
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~--fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~Ll 547 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARL--FLAEYFKKMKDFDEASYYATLVLKGETECEEAKALL 547 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHH--HHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHH
Confidence 9999999999999999999999998664333 22333333 37788888999999999888874443 334555443
No 34
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.26 E-value=3.9e-09 Score=109.14 Aligned_cols=212 Identities=14% Similarity=0.061 Sum_probs=169.4
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCh--HHHHHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSA--YHAAKHLEQ 105 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~--~~aa~~~~~ 105 (325)
.|++++|..++.++...... .++.......+..++.++...|++++|..++.++..+....+.. ...+..+..
T Consensus 504 ~G~~~~A~~~~~~al~~~~~-----~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 578 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQ-----HDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI 578 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhh-----hcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 47899999999999988765 24444555577888999999999999999999999998876532 223445667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChh--------
Q psy10061 106 AIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYK-------- 176 (325)
Q Consensus 106 ~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~-------- 176 (325)
++.++...|++++|..++++++.+....+.. ..+..+..+|.++...+ +++|...+.++..+....+...
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 657 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQ-QQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK 657 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH
Confidence 8899999999999999999999998876643 34567778888888777 9999999999887755432110
Q ss_pred -------------------------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q psy10061 177 -------------------------------QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVAL 225 (325)
Q Consensus 177 -------------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 225 (325)
.....+..++.++...|++++|..++++++...+..+.......++..+
T Consensus 658 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~l 737 (903)
T PRK04841 658 VRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILL 737 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 0011135688899999999999999999999988887766677788899
Q ss_pred HHHHHhcCCHHHHHHHHHhh
Q psy10061 226 VLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 226 g~~~~~~gd~~~A~~~~~~~ 245 (325)
|.++...|++.+|...+.++
T Consensus 738 a~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 738 NQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999997
No 35
>KOG1155|consensus
Probab=99.23 E-value=6.3e-10 Score=101.16 Aligned_cols=188 Identities=11% Similarity=0.070 Sum_probs=151.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061 67 ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKG 146 (325)
Q Consensus 67 ~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~l 146 (325)
|+-|...++.++|+.+|.+|+.+..+. ..++.-+|-=|.++.+...|++.|+.|+++.... + +++.-+
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~~------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D--y----RAWYGL 404 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPKY------LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD--Y----RAWYGL 404 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcch------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh--H----HHHhhh
Confidence 566778888999999999999887654 4578889999999999999999999999986543 2 268899
Q ss_pred HHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q psy10061 147 AKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVAL 225 (325)
Q Consensus 147 g~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 225 (325)
|+.|.-++ +.=|+-+|++|..+-+.+ ...+..+|.+|.++++.++|+++|.+++..- +. .+.++..+
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~kPnD------sRlw~aLG~CY~kl~~~~eAiKCykrai~~~----dt--e~~~l~~L 472 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALELKPND------SRLWVALGECYEKLNRLEEAIKCYKRAILLG----DT--EGSALVRL 472 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhcCCCc------hHHHHHHHHHHHHhccHHHHHHHHHHHHhcc----cc--chHHHHHH
Confidence 99999999 888999999999875532 2478889999999999999999999998752 22 34578899
Q ss_pred HHHHHhcCCHHHHHHHHHhh-c-c-c---CCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 226 VLVQLARGDTVAAEKAFKEW-G-N-C---CEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 226 g~~~~~~gd~~~A~~~~~~~-~-~-~---~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
|.+|-..+|..+|..+|+++ . . . ....-.++..-|.+-. ..+|.+.+......
T Consensus 473 akLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 99999999999999999997 2 1 1 1111223444466665 58899999987766
No 36
>KOG1941|consensus
Probab=99.21 E-value=2.7e-09 Score=94.45 Aligned_cols=208 Identities=13% Similarity=0.061 Sum_probs=158.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q psy10061 55 DYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQG 134 (325)
Q Consensus 55 ~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g 134 (325)
|-.--.+.|-+++..+...-++.+++.+-.-.+.+= .......-......+++.+..++.|+++++++++|+.+....+
T Consensus 78 ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp-gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~ 156 (518)
T KOG1941|consen 78 DSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLP-GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNND 156 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC-CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC
Confidence 334444556666666666666666555433322211 1111112234556688999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCC--Ch--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 135 NREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGED--NY--KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH 209 (325)
Q Consensus 135 ~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~--~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 209 (325)
|..-..+++..+|.+|.... +++|+-+..+|+++....+ +. -....++..++..+..+|+...|.++++++..+.
T Consensus 157 D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 157 DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 99999999999999999886 9999999999999988765 22 2224567789999999999999999999999999
Q ss_pred HHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-----cccCCChHHHHHHHHHHH
Q psy10061 210 QESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-----GNCCEAPEVQTLEKLLQA 263 (325)
Q Consensus 210 ~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-----~~~~~~~e~~~l~~L~~a 263 (325)
-+.|++...+..+..++.||...||.+.|..-|+++ ...+...+..++......
T Consensus 237 l~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc 295 (518)
T KOG1941|consen 237 LQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKC 295 (518)
T ss_pred HHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 999998888899999999999999999999999996 222344455555555544
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=1.1e-08 Score=89.43 Aligned_cols=153 Identities=12% Similarity=0.069 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChh
Q psy10061 98 HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYK 176 (325)
Q Consensus 98 ~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~ 176 (325)
.+-.++..+..+|....+|.+|++.-++...+-.+ ......|..|-.++.-+...+ .+.|+..+.+|++.-+..
T Consensus 139 fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q-~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c---- 213 (389)
T COG2956 139 FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ-TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKC---- 213 (389)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc-cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc----
Confidence 33444555555555555555555544443322111 112344455555555555443 666777777766543322
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHH
Q psy10061 177 QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQ 255 (325)
Q Consensus 177 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~ 255 (325)
..+-..+|.++...|+|++|++.++.+++- ++.-.+.+...+-.||...|+..+....+.++ ..+.+.+---
T Consensus 214 --vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-----n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l 286 (389)
T COG2956 214 --VRASIILGRVELAKGDYQKAVEALERVLEQ-----NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAEL 286 (389)
T ss_pred --eehhhhhhHHHHhccchHHHHHHHHHHHHh-----ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHH
Confidence 112234677777777777777777666552 23334445566667777777777777777776 4444433333
Q ss_pred HHHHHHH
Q psy10061 256 TLEKLLQ 262 (325)
Q Consensus 256 ~l~~L~~ 262 (325)
++.+++.
T Consensus 287 ~l~~lie 293 (389)
T COG2956 287 MLADLIE 293 (389)
T ss_pred HHHHHHH
Confidence 4444433
No 38
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.20 E-value=4.4e-09 Score=107.89 Aligned_cols=153 Identities=11% Similarity=0.021 Sum_probs=107.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHH
Q psy10061 105 QAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYIS 183 (325)
Q Consensus 105 ~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~ 183 (325)
.+|.++...|++++|+.++++++... .+. ...+..++......+ +++|+.+|++++++.+. ...+.
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l~---P~~---~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-------~~a~~ 613 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQRG---LGD---NALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-------ANAYV 613 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC---Ccc---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-------HHHHH
Confidence 34444444555555555555544321 000 111222333333335 99999999999987652 35788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHH
Q psy10061 184 RAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQ 262 (325)
Q Consensus 184 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~ 262 (325)
++|.++.++|++++|+..|++++.+.+.. ..++.++|.++...|++++|+..|+++ ...... ..+...|+.
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~l~Pd~------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~--~~a~~nLA~ 685 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALELEPNN------SNYQAALGYALWDSGDIAQSREMLERAHKGLPDD--PALIRQLAY 685 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHH
Confidence 99999999999999999999999874331 246789999999999999999999998 333322 457788999
Q ss_pred HH-hcCCHHHHHHHhcC
Q psy10061 263 AF-DEEDPEGARQALND 278 (325)
Q Consensus 263 a~-~~gd~~~~~~~~~~ 278 (325)
++ ..||.+.+..++++
T Consensus 686 al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 686 VNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 87 59999999988876
No 39
>KOG2002|consensus
Probab=99.20 E-value=3.8e-09 Score=103.59 Aligned_cols=238 Identities=17% Similarity=0.159 Sum_probs=160.6
Q ss_pred ccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy10061 25 MTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLE 104 (325)
Q Consensus 25 ~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~ 104 (325)
|+..++|..+..+..-|.+.... -..-++.|.+.|.+|..+|+|++|..+|.++..+.... -.-.+.
T Consensus 280 fyfK~dy~~v~~la~~ai~~t~~--------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-----~~l~~~ 346 (1018)
T KOG2002|consen 280 FYFKKDYERVWHLAEHAIKNTEN--------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-----FVLPLV 346 (1018)
T ss_pred HhhcccHHHHHHHHHHHHHhhhh--------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-----cccccc
Confidence 44444666666666655544321 12234556677888889999999999999887665432 223466
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH--------------HHcC----CHHH--------------HHHHHHHHHHHHhc
Q psy10061 105 QAIMMCKELNDLTDVENLAKQAATLF--------------LEQG----NREA--------------ASTVLEKGAKSLEE 152 (325)
Q Consensus 105 ~~~~~y~~~g~~~eA~~~~~~A~~~~--------------~~~g----~~~~--------------aa~~l~~lg~~~~~ 152 (325)
.+|.+|...|++..++-++++.+..+ ...+ ..+. -.+++..++.+|+.
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 77888888888888888887765432 1111 0011 12356677888888
Q ss_pred cCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHH----HHHHHHHHHHHH
Q psy10061 153 LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLL----AIGRLAVALVLV 228 (325)
Q Consensus 153 ~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~lg~~ 228 (325)
.+.-.++..|.+|++++...+.. --.+.++++|..++..|++.+|..+|.+|+..+.+..+.. ..-...++++.|
T Consensus 427 ~d~~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 TDPWASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 88555699999999999888765 4468999999999999999999999999999865332111 112346789999
Q ss_pred HHhcCCHHHHHHHHHhh-cccCCChHHHHHHHH-HHHHhcCCHHHHHHHhcC
Q psy10061 229 QLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKL-LQAFDEEDPEGARQALND 278 (325)
Q Consensus 229 ~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L-~~a~~~gd~~~~~~~~~~ 278 (325)
.-..+++..|.+.|... ..+.+.-.+.+ +| +-+...+....+...++.
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp~YId~yl--Rl~~ma~~k~~~~ea~~~lk~ 555 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHPGYIDAYL--RLGCMARDKNNLYEASLLLKD 555 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCchhHHHHH--HhhHHHHhccCcHHHHHHHHH
Confidence 99999999999999997 33333333332 23 334445555555555554
No 40
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.20 E-value=7.7e-09 Score=93.10 Aligned_cols=152 Identities=6% Similarity=-0.104 Sum_probs=111.3
Q ss_pred ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIM 108 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~ 108 (325)
...+.++..+.+.+..... +.+.-+..|...|.+|...|++++|...|.+++.+.... ..++.++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~-------~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~ 106 (296)
T PRK11189 40 LQQEVILARLNQILASRDL-------TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM------ADAYNYLGI 106 (296)
T ss_pred hHHHHHHHHHHHHHccccC-------CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHH
Confidence 3567777777776654322 224546778888999999999999999999998875432 568899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy10061 109 MCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAAR 187 (325)
Q Consensus 109 ~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~ 187 (325)
+|...|++++|+..|++++++.... ..++.++|.++...+ +++|++.+++++.+..... . ...+ ..
T Consensus 107 ~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~--~--~~~~---~~ 173 (296)
T PRK11189 107 YLTQAGNFDAAYEAFDSVLELDPTY------NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP--Y--RALW---LY 173 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--H--HHHH---HH
Confidence 9999999999999999998763221 236788999888777 9999999999998765432 1 0111 12
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q psy10061 188 MCVRVKEFDKAADLIRQEI 206 (325)
Q Consensus 188 ~~~~~g~~~~A~~~~~~al 206 (325)
+....+++++|+..|.+++
T Consensus 174 l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 174 LAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHccCCHHHHHHHHHHHH
Confidence 3344567888888886654
No 41
>KOG1129|consensus
Probab=99.15 E-value=3.5e-09 Score=92.64 Aligned_cols=198 Identities=14% Similarity=0.134 Sum_probs=145.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------H
Q psy10061 64 SKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAAT--------------L 129 (325)
Q Consensus 64 ~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~--------------~ 129 (325)
+++|.||..+|-+.+|...+..++.-+... +.|.-++.+|.+..++..|+..+.+.++ |
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~-------dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHP-------DTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCch-------hHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHH
Confidence 367888888888888888887776655432 3566666777777777777666665443 4
Q ss_pred HHHcCCHHHHHHHHHHHHHH--------------HhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCC
Q psy10061 130 FLEQGNREAASTVLEKGAKS--------------LEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE 194 (325)
Q Consensus 130 ~~~~g~~~~aa~~l~~lg~~--------------~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 194 (325)
++.+++.+.+++.|...... |.-.+ ++-|+.+|++.+.+-... .+.+.+||.+..-.++
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s------peLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS------PELFCNIGLCCLYAQQ 373 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC------hHHHhhHHHHHHhhcc
Confidence 55556666666655554333 22223 888999998888765443 3688999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHHHH-HhcCCHHHHH
Q psy10061 195 FDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQA-FDEEDPEGAR 273 (325)
Q Consensus 195 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a-~~~gd~~~~~ 273 (325)
++-++..|++++....+ +...+..|+|+|.+....||+.-|..+|+-+-. .+...+..+.+|+-. +..||.+.++
T Consensus 374 ~D~~L~sf~RAlstat~---~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~-~d~~h~ealnNLavL~~r~G~i~~Ar 449 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQ---PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT-SDAQHGEALNNLAVLAARSGDILGAR 449 (478)
T ss_pred hhhhHHHHHHHHhhccC---cchhhhhhhccceeEEeccchHHHHHHHHHHhc-cCcchHHHHHhHHHHHhhcCchHHHH
Confidence 99999999999987643 344667899999999999999999999998711 223345678888764 5799999999
Q ss_pred HHhcC
Q psy10061 274 QALND 278 (325)
Q Consensus 274 ~~~~~ 278 (325)
..++.
T Consensus 450 sll~~ 454 (478)
T KOG1129|consen 450 SLLNA 454 (478)
T ss_pred HHHHH
Confidence 99876
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.14 E-value=1.2e-07 Score=83.07 Aligned_cols=240 Identities=13% Similarity=0.120 Sum_probs=186.8
Q ss_pred HHHHHhhchhcccc-----ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy10061 13 YVKSAEKHSLSTMT-----SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAA 87 (325)
Q Consensus 13 ~~~~ae~~~~~~~~-----~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~ 87 (325)
.-++|.+...+|+. .+++.++|.++|.+-.+.- .+-.+..--+|++|+..|..+.|+..++...
T Consensus 28 ~~~qa~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d-----------~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~ 96 (389)
T COG2956 28 KQDQANRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQED-----------PETFEAHLTLGNLFRSRGEVDRAIRIHQTLL 96 (389)
T ss_pred HHHHHhhccHHHHhHHHHHhhcCcchHHHHHHHHHhcC-----------chhhHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 44677777776643 3568899999999876633 2334566689999999999999999988754
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHH
Q psy10061 88 NCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAA 166 (325)
Q Consensus 88 ~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al 166 (325)
+--.- -...-..+...+|.=|...|-+|.|...|....+. .+-+-.++..+-.+|+... .++|++.-++-.
T Consensus 97 ~spdl--T~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~ 168 (389)
T COG2956 97 ESPDL--TFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE------GEFAEGALQQLLNIYQATREWEKAIDVAERLV 168 (389)
T ss_pred cCCCC--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 32211 12445678899999999999999999999887643 4455668899999999887 999999999888
Q ss_pred HHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q psy10061 167 DVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWG 246 (325)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~ 246 (325)
.+-.+. .....+..+..++..+....+.+.|+..+.+++...+.. . ++-..+|.+++..|+|++|.+.++...
T Consensus 169 k~~~q~-~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c----v--RAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 169 KLGGQT-YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKC----V--RASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred HcCCcc-chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc----e--ehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 876654 445567889999999999999999999999998863321 1 233468999999999999999999972
Q ss_pred ccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 247 NCCEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 247 ~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
.-+..--..++..|..+| ..|+++.+...+++
T Consensus 242 eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 242 EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 222222356888999998 59999999998887
No 43
>KOG1126|consensus
Probab=99.13 E-value=3.5e-10 Score=106.80 Aligned_cols=126 Identities=16% Similarity=0.055 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHH
Q psy10061 102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAE 180 (325)
Q Consensus 102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~ 180 (325)
++..+|.+|.++++++.|.-++++|++|--.. ...+.-+|.++...+ .|+|+.+|++|+.+-... .-
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn------~l 558 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN------SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN------PL 558 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCccc------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC------ch
Confidence 44445555555555555555555554442111 112333444444444 455555555554433221 12
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 181 YISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
+....|.++..+++|++|+..+++.-++.++ .+..+..+|.+|-..|+...|+..|-=+
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~------es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQ------ESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcc------hHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 3334444455555555555544444333221 1123334455555555555554444443
No 44
>KOG1173|consensus
Probab=99.12 E-value=1.5e-09 Score=100.85 Aligned_cols=191 Identities=16% Similarity=0.107 Sum_probs=148.8
Q ss_pred cccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy10061 26 TSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQ 105 (325)
Q Consensus 26 ~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~ 105 (325)
.+.+++.+|..+|-||-.+-.+ |.. .+--.|..|...+.-++|+.+|..|.+++.....| +.=
T Consensus 323 l~i~k~seARry~SKat~lD~~--------fgp---aWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP------~LY 385 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPT--------FGP---AWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP------SLY 385 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCcc--------ccH---HHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch------HHH
Confidence 3447889999999988655433 222 23345777888888899999999999988766443 234
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChh-hHHHHHH
Q psy10061 106 AIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYK-QAAEYIS 183 (325)
Q Consensus 106 ~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~-~~~~~~~ 183 (325)
+|.=|...+++.-|..++.+|..|....- -+++.+|.+....+ |.+|+.+++.++...+...+.. .-.-++.
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dp------lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPSDP------LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcc------hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 57777888899999999999988755332 26888999887665 9999999999997777665432 2334789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 184 RAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 184 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
+||.++.++++|.+|+.+|+++|.+.++. ..++..+|.||..+|+++.|.++|.++
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~------~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLLSPKD------ASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHcCCCc------hhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 99999999999999999999999875442 235678999999999999999999997
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.11 E-value=1.9e-09 Score=96.18 Aligned_cols=183 Identities=15% Similarity=0.121 Sum_probs=101.7
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 71 KGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSL 150 (325)
Q Consensus 71 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~ 150 (325)
...+++++|...+.++.+-. ++ ...+..++.++...++++++...++++.. ......-..++..+|.++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~---~~----~~~l~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~a~~~ 156 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERD---GD----PRYLLSALQLYYRLGDYDEAEELLEKLEE----LPAAPDSARFWLALAEIY 156 (280)
T ss_dssp -------------------------------------H-HHHTT-HHHHHHHHHHHHH-----T---T-HHHHHHHHHHH
T ss_pred cccccccccccccccccccc---cc----cchhhHHHHHHHHHhHHHHHHHHHHHHHh----ccCCCCCHHHHHHHHHHH
Confidence 46677778777776654322 22 24556677788899999999999888763 232334566889999999
Q ss_pred hccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q psy10061 151 EELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQ 229 (325)
Q Consensus 151 ~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~ 229 (325)
...| +++|+++|++|+++.+.. ..+...++.+++..|+++++...+.......+... .++..+|.++
T Consensus 157 ~~~G~~~~A~~~~~~al~~~P~~------~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~------~~~~~la~~~ 224 (280)
T PF13429_consen 157 EQLGDPDKALRDYRKALELDPDD------PDARNALAWLLIDMGDYDEAREALKRLLKAAPDDP------DLWDALAAAY 224 (280)
T ss_dssp HHCCHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC------CHCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH------HHHHHHHHHh
Confidence 9998 999999999999988764 24677899999999999998888777665442222 2445689999
Q ss_pred HhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 230 LARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 230 ~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
+..|++++|+..|++. ... .....++..+++++ ..|+.+.+....++
T Consensus 225 ~~lg~~~~Al~~~~~~~~~~--p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 225 LQLGRYEEALEYLEKALKLN--PDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHT--------------
T ss_pred cccccccccccccccccccc--ccccccccccccccccccccccccccccc
Confidence 9999999999999997 322 23355677889998 59999988887665
No 46
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.10 E-value=6e-09 Score=90.45 Aligned_cols=167 Identities=9% Similarity=-0.027 Sum_probs=127.5
Q ss_pred ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061 27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA 106 (325)
Q Consensus 27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~ 106 (325)
..+++++|+..+.++.+.... .....+.+...|.+|...|++++|...|.++++.+.... ....++..+
T Consensus 45 ~~~~~~~A~~~~~~~~~~~p~--------~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~a~~~~ 113 (235)
T TIGR03302 45 DSGDYTEAIKYFEALESRYPF--------SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP---DADYAYYLR 113 (235)
T ss_pred HcCCHHHHHHHHHHHHHhCCC--------chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC---chHHHHHHH
Confidence 346899999999998776633 244556677889999999999999999999998776433 234467788
Q ss_pred HHHHHHc--------CCHHHHHHHHHHHHHHHHHcCCHHHHH-----------HHHHHHHHHHhccC-HHHHHHHHHHHH
Q psy10061 107 IMMCKEL--------NDLTDVENLAKQAATLFLEQGNREAAS-----------TVLEKGAKSLEELK-SDAALTLYSRAA 166 (325)
Q Consensus 107 ~~~y~~~--------g~~~eA~~~~~~A~~~~~~~g~~~~aa-----------~~l~~lg~~~~~~~-~~~A~~~y~~Al 166 (325)
|.++... |++++|+..+++++..+........+. .....+|.+|...+ +.+|+..|++++
T Consensus 114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 193 (235)
T TIGR03302 114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVV 193 (235)
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 8888765 789999999999987765554333221 11235677777777 999999999999
Q ss_pred HHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061 167 DVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIG 207 (325)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 207 (325)
+.+... .....++..+|.++..+|++++|+.+++....
T Consensus 194 ~~~p~~---~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 194 ENYPDT---PATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHCCCC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 887764 23357888999999999999999998776543
No 47
>KOG0548|consensus
Probab=99.10 E-value=2.1e-08 Score=92.94 Aligned_cols=225 Identities=13% Similarity=0.040 Sum_probs=157.8
Q ss_pred HHhhchhccccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc-C
Q psy10061 16 SAEKHSLSTMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN-K 94 (325)
Q Consensus 16 ~ae~~~~~~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~-~ 94 (325)
..||-+..=.....++..|++.|.++..+- ..+..+...+.+|...|.+.+.+.....+.+..+.. .
T Consensus 225 ~~ek~lgnaaykkk~f~~a~q~y~~a~el~------------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ra 292 (539)
T KOG0548|consen 225 HKEKELGNAAYKKKDFETAIQHYAKALELA------------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRA 292 (539)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHhHh------------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHH
Confidence 344444332333346777777777775543 345666777778888888887777777766655543 2
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------cCCHHHHHH--------------HHHHHHHHHhccC
Q psy10061 95 SAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLE------QGNREAAST--------------VLEKGAKSLEELK 154 (325)
Q Consensus 95 ~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~------~g~~~~aa~--------------~l~~lg~~~~~~~ 154 (325)
+....+.++..+|..|.+.++++.++.+|++++.-++. ....+++.. ....-|.-+...+
T Consensus 293 d~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 293 DYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred HHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhcc
Confidence 44558888889999999999999999999999876554 111122111 1222244444444
Q ss_pred -HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcC
Q psy10061 155 -SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARG 233 (325)
Q Consensus 155 -~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g 233 (325)
|..|+.+|.+|+..-+.. ...|.+.+.+|.++|++..|+.-.+.++++. +.. ...|++-|.|+..+.
T Consensus 373 dy~~Av~~YteAIkr~P~D------a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-----p~~-~kgy~RKg~al~~mk 440 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPED------ARLYSNRAACYLKLGEYPEALKDAKKCIELD-----PNF-IKAYLRKGAALRAMK 440 (539)
T ss_pred CHHHHHHHHHHHHhcCCch------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-----chH-HHHHHHHHHHHHHHH
Confidence 999999999988654322 4689999999999999999999999998872 222 246677899999999
Q ss_pred CHHHHHHHHHhhcccCCChHHHHHHHHHHHHh
Q psy10061 234 DTVAAEKAFKEWGNCCEAPEVQTLEKLLQAFD 265 (325)
Q Consensus 234 d~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~~ 265 (325)
+|++|.+.|++....+ +....++..+.+++.
T Consensus 441 ~ydkAleay~eale~d-p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 441 EYDKALEAYQEALELD-PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHhcC-chhHHHHHHHHHHHH
Confidence 9999999999984333 334556777777764
No 48
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.09 E-value=2.2e-09 Score=76.48 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 58 SAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAY-HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFL 131 (325)
Q Consensus 58 ~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~-~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~ 131 (325)
..+.+|..+|.+|...|+|++|+++|.+++++.+..|+.. ..+.++.++|.+|..+|++++|+.++++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 4455666666666666666666666666666655555443 3466666666666666666666666666666654
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=99.08 E-value=1.2e-08 Score=99.79 Aligned_cols=182 Identities=9% Similarity=-0.103 Sum_probs=131.0
Q ss_pred ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIM 108 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~ 108 (325)
+++++|+..+++|.++- ++.. ..+..+|.++...|++++|..+|.+++++.... +.++..+|.
T Consensus 318 ~~~~~A~~~~~~Al~ld--------P~~~---~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~ 380 (553)
T PRK12370 318 NAMIKAKEHAIKATELD--------HNNP---QALGLLGLINTIHSEYIVGSLLFKQANLLSPIS------ADIKYYYGW 380 (553)
T ss_pred hHHHHHHHHHHHHHhcC--------CCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHH
Confidence 46788888888887654 3333 346677899999999999999999998876432 347888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy10061 109 MCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARM 188 (325)
Q Consensus 109 ~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~ 188 (325)
++...|++++|+.++++++.+.-.. .. ..+..++..+...++++|+.++++++...... ....+..+|.+
T Consensus 381 ~l~~~G~~~eAi~~~~~Al~l~P~~---~~--~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~-----~~~~~~~la~~ 450 (553)
T PRK12370 381 NLFMAGQLEEALQTINECLKLDPTR---AA--AGITKLWITYYHTGIDDAIRLGDELRSQHLQD-----NPILLSMQVMF 450 (553)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCC---hh--hHHHHHHHHHhccCHHHHHHHHHHHHHhcccc-----CHHHHHHHHHH
Confidence 9999999999999999998773321 11 12223333444444999999999987653211 13467789999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 189 CVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 189 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
|..+|++++|...+.+.+.... ........++.+|...|+ .|...++..
T Consensus 451 l~~~G~~~eA~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~--~a~~~l~~l 499 (553)
T PRK12370 451 LSLKGKHELARKLTKEISTQEI------TGLIAVNLLYAEYCQNSE--RALPTIREF 499 (553)
T ss_pred HHhCCCHHHHHHHHHHhhhccc------hhHHHHHHHHHHHhccHH--HHHHHHHHH
Confidence 9999999999999987544211 111244567788888885 677766664
No 50
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.08 E-value=2.7e-09 Score=75.94 Aligned_cols=74 Identities=16% Similarity=0.223 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHh
Q psy10061 97 YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNRE-AASTVLEKGAKSLEELK-SDAALTLYSRAADVAH 170 (325)
Q Consensus 97 ~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~-~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~ 170 (325)
...+.++.++|.+|..+|++++|+.+|++++++....|+.. ..+.++.++|.++...+ +++|++++++|+++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 34567778888888888888888888888888876777644 45777777777777776 7777777777777664
No 51
>KOG1126|consensus
Probab=99.04 E-value=1.3e-09 Score=103.14 Aligned_cols=221 Identities=10% Similarity=0.075 Sum_probs=161.4
Q ss_pred ccHHHHHHHHHHHHhhhcc---c-------ccCCCCCHH-------------HHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKT---S-------LLKWKPDYD-------------SAADDYSKAATCFKGAKSFQQCKEYLLK 85 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~---~-------~~~~~~~~~-------------~A~~~y~~a~~~y~~~g~~~~A~~~~~~ 85 (325)
.+|++|...|..+-+.-.- + +++.++++. ..-+.+--+|+||..+++++.|+.+|.+
T Consensus 367 ~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~R 446 (638)
T KOG1126|consen 367 IEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKR 446 (638)
T ss_pred HHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHH
Confidence 4788899888887655432 1 111122222 1123444578999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHH
Q psy10061 86 AANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSR 164 (325)
Q Consensus 86 a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~ 164 (325)
|+.+-... +.+|.-+|-=+.....+|.|..+|++|+.+-.+. =+++.-+|.+|.+.+ ++.|.-+|++
T Consensus 447 AiQldp~f------aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh------YnAwYGlG~vy~Kqek~e~Ae~~fqk 514 (638)
T KOG1126|consen 447 AIQLDPRF------AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH------YNAWYGLGTVYLKQEKLEFAEFHFQK 514 (638)
T ss_pred hhccCCcc------chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh------hHHHHhhhhheeccchhhHHHHHHHh
Confidence 98765433 4577888877777888999999999998653322 236889999999887 9999999999
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHh
Q psy10061 165 AADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 244 (325)
Q Consensus 165 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~ 244 (325)
|+++-... ..++..+|.++.++|+.++|+.+|++|+.+-+.. .. .-+..+.+++..+++++|+..+++
T Consensus 515 A~~INP~n------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn----~l--~~~~~~~il~~~~~~~eal~~LEe 582 (638)
T KOG1126|consen 515 AVEINPSN------SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN----PL--CKYHRASILFSLGRYVEALQELEE 582 (638)
T ss_pred hhcCCccc------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC----ch--hHHHHHHHHHhhcchHHHHHHHHH
Confidence 99886654 2466789999999999999999999998863322 12 335688999999999999999999
Q ss_pred hcccCCChHHHHHHHHHHHHh-cCCHHHHHH
Q psy10061 245 WGNCCEAPEVQTLEKLLQAFD-EEDPEGARQ 274 (325)
Q Consensus 245 ~~~~~~~~e~~~l~~L~~a~~-~gd~~~~~~ 274 (325)
.... ..+|.-+...|+..|. .|..+.+.-
T Consensus 583 Lk~~-vP~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 583 LKEL-VPQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred HHHh-CcchHHHHHHHHHHHHHHccchHHHH
Confidence 7333 1345556667788874 555554443
No 52
>KOG2076|consensus
Probab=99.04 E-value=9.6e-08 Score=93.32 Aligned_cols=92 Identities=11% Similarity=0.056 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHH
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLE 258 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~ 258 (325)
..+..++..|...|+|.+|+.+|...... .....+-+|..+|.||...|.++.|.++|+++ ..-... -.+..
T Consensus 415 dL~~d~a~al~~~~~~~~Al~~l~~i~~~-----~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~--~D~Ri 487 (895)
T KOG2076|consen 415 DLYLDLADALTNIGKYKEALRLLSPITNR-----EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDN--LDARI 487 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhcC-----ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc--hhhhh
Confidence 56778888888999999999988765542 22233568899999999999999999999997 222211 22444
Q ss_pred HHHHHH-hcCCHHHHHHHhcC
Q psy10061 259 KLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 259 ~L~~a~-~~gd~~~~~~~~~~ 278 (325)
.|...+ ..|+++++.+.+.+
T Consensus 488 ~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 488 TLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred hHHHHHHhcCCHHHHHHHHhc
Confidence 566776 58999988887766
No 53
>KOG2002|consensus
Probab=99.00 E-value=1.8e-08 Score=99.02 Aligned_cols=234 Identities=14% Similarity=0.075 Sum_probs=149.7
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHH----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDS----AADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHL 103 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~----A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~ 103 (325)
-|.+.+|.++|.+|+...... .|.++ -+..-.+++.+.-..++++.|.+.|...+.-+. +-..+|
T Consensus 465 ~g~~~~A~~~f~~A~~~~~~~-----~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp------~YId~y 533 (1018)
T KOG2002|consen 465 LGNIEKALEHFKSALGKLLEV-----ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP------GYIDAY 533 (1018)
T ss_pred hcChHHHHHHHHHHhhhhhhh-----cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc------hhHHHH
Confidence 357888888888888774320 11111 133344556666666677777777766544332 334566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-------C-------------CHH----------HHHHHHHHHHHHHhcc
Q psy10061 104 EQAIMMCKELNDLTDVENLAKQAATLFLEQ-------G-------------NRE----------AASTVLEKGAKSLEEL 153 (325)
Q Consensus 104 ~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~-------g-------------~~~----------~aa~~l~~lg~~~~~~ 153 (325)
.++|-+-+..+...+|..++..++++-... | ... .=+-++..||++|...
T Consensus 534 lRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 534 LRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA 613 (1018)
T ss_pred HHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence 666644455556666666666655421000 0 000 0012345567766543
Q ss_pred ------CHHHHHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q psy10061 154 ------KSDAALTLYSRAADVAHGE-DNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALV 226 (325)
Q Consensus 154 ------~~~~A~~~y~~Al~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 226 (325)
+...+..++.+|+++|.+. ...+.-+.+-+.+|-|+...|++.+|+.+|.++.+-..+ -...|+|+|
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~------~~dv~lNla 687 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD------FEDVWLNLA 687 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh------CCceeeeHH
Confidence 2556667777777776532 222222456688999999999999999999988764321 224678999
Q ss_pred HHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 227 LVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 227 ~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
.||+.+|+|..|++.|+.+ ..|.......++.-|++++ +.|....+...+..
T Consensus 688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9999999999999999998 6676666678899999996 68887777766654
No 54
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.97 E-value=7.3e-08 Score=97.78 Aligned_cols=201 Identities=10% Similarity=-0.027 Sum_probs=124.8
Q ss_pred ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIM 108 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~ 108 (325)
+++++|+..|+++.+.-.. .+++ +. .+ ++.+|...|++++|...|.+++..... +..........++.
T Consensus 251 g~~~eA~~~~~~ll~~~~~-----~P~~--a~-~~--la~~yl~~g~~e~A~~~l~~~l~~~p~--~~~~~~~~~~~L~~ 318 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQI-----IPPW--AQ-RW--VASAYLKLHQPEKAQSILTELFYHPET--IADLSDEELADLFY 318 (765)
T ss_pred hhHHHHHHHHHHhhccCCC-----CCHH--HH-HH--HHHHHHhcCCcHHHHHHHHHHhhcCCC--CCCCChHHHHHHHH
Confidence 4566666666665443211 1222 11 11 366788888888888888876542211 10111234556666
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHH--------cCCHH-HHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061 109 MCKELNDLTDVENLAKQAATLFLE--------QGNRE-AASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA 178 (325)
Q Consensus 109 ~y~~~g~~~eA~~~~~~A~~~~~~--------~g~~~-~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~ 178 (325)
++.+.|++++|+.+++++...... ...+. .....+..++.++...+ +++|+..+++++...+..
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n------ 392 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN------ 392 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Confidence 777888888888888877654211 11111 22345566777777666 888888888887765443
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChH
Q psy10061 179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPE 253 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e 253 (325)
..++..+|.++...|++++|+..+++++.+.+.. . .+++..+.+++..|++++|...+++. ..+.....
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~-----~-~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAENELKKAEVLEPRN-----I-NLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-----h-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 2477788888888888888888888887764221 1 25566777888888888888888887 44444433
No 55
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.95 E-value=9.9e-08 Score=85.89 Aligned_cols=183 Identities=11% Similarity=-0.060 Sum_probs=127.5
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI 107 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~ 107 (325)
.|++++|+..|.+|.+.. ++. ...|...|.++...|++++|...|.+++++.... ..++.++|
T Consensus 77 ~g~~~~A~~~~~~Al~l~--------P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg 139 (296)
T PRK11189 77 LGLRALARNDFSQALALR--------PDM---ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY------NYAYLNRG 139 (296)
T ss_pred CCCHHHHHHHHHHHHHcC--------CCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Confidence 368889999998887754 332 4678899999999999999999999999876442 34789999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy10061 108 MMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAA 186 (325)
Q Consensus 108 ~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg 186 (325)
.++...|++++|+..+++++.+... +... ..+. .+.... ++++|+..+.+++..... + .+ ..+
T Consensus 140 ~~l~~~g~~~eA~~~~~~al~~~P~--~~~~--~~~~---~l~~~~~~~~~A~~~l~~~~~~~~~--~------~~-~~~ 203 (296)
T PRK11189 140 IALYYGGRYELAQDDLLAFYQDDPN--DPYR--ALWL---YLAESKLDPKQAKENLKQRYEKLDK--E------QW-GWN 203 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC--CHHH--HHHH---HHHHccCCHHHHHHHHHHHHhhCCc--c------cc-HHH
Confidence 9999999999999999999876332 2211 1111 122333 499999999887643211 1 11 134
Q ss_pred HHHHHcCCHHHH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 187 RMCVRVKEFDKA--ADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 187 ~~~~~~g~~~~A--~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.++..+|++.++ +..+.+.+....+... ....+|+.+|.++...|++++|+.+|+++
T Consensus 204 ~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~--~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 204 IVEFYLGKISEETLMERLKAGATDNTELAE--RLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HHHHHccCCCHHHHHHHHHhcCCCcHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 555566766544 3333333222223332 23457889999999999999999999998
No 56
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.94 E-value=2.6e-07 Score=93.74 Aligned_cols=243 Identities=13% Similarity=0.004 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCH-HHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q psy10061 32 EEGMEYVKSAEKHLKTSLLKWKPDY-DSAADD-YSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMM 109 (325)
Q Consensus 32 ~eA~~l~~~A~~~~~~~~~~~~~~~-~~A~~~-y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~ 109 (325)
++|++.+++..+.... .++. ..-... +..++.+ ...|++++|+..|.+++..... .+.. +. ..++.+
T Consensus 213 d~Al~~~~~ll~~~~~-----~p~~~~~~~~a~~d~l~~L-l~~g~~~eA~~~~~~ll~~~~~--~P~~-a~--~~la~~ 281 (765)
T PRK10049 213 DRALAQYDALEALWHD-----NPDATADYQRARIDRLGAL-LARDRYKDVISEYQRLKAEGQI--IPPW-AQ--RWVASA 281 (765)
T ss_pred HHHHHHHHHHHhhccc-----CCccchHHHHHHHHHHHHH-HHhhhHHHHHHHHHHhhccCCC--CCHH-HH--HHHHHH
Confidence 5677777776655432 1211 111111 2234555 4669999999999997655321 1222 22 225889
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC--------CChh-hHH
Q psy10061 110 CKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE--------DNYK-QAA 179 (325)
Q Consensus 110 y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~--------~~~~-~~~ 179 (325)
|..+|++++|+.+|++++..- -.+..........++.++...+ +++|+.+++++....... ..+. ...
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 999999999999999987431 1111111234566666676666 999999999998764321 1111 223
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHH
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLE 258 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~ 258 (325)
.++..++.++...|++++|+..+++++...+.. ..+++.++.++...|++.+|+..++++ ....+..+ +..
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n------~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~--l~~ 431 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN------QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN--LEV 431 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH--HHH
Confidence 567789999999999999999999998764322 247788999999999999999999998 43433333 333
Q ss_pred HHHH-HHhcCCHHHHHHHhcChh-hhcccHHHHHHhhcC
Q psy10061 259 KLLQ-AFDEEDPEGARQALNDPF-IKHMDVEYSRLARDL 295 (325)
Q Consensus 259 ~L~~-a~~~gd~~~~~~~~~~~~-~~~l~~~~~~~~~~l 295 (325)
.++. +...|+.+.+...+++-+ ...-++.+.++.+.+
T Consensus 432 ~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 432 EQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4444 457999999999988722 333355566666655
No 57
>KOG0547|consensus
Probab=98.94 E-value=1.4e-07 Score=86.67 Aligned_cols=130 Identities=15% Similarity=0.074 Sum_probs=78.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy10061 63 YSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTV 142 (325)
Q Consensus 63 y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~ 142 (325)
|.+.+.+|....+..+-...|.+|.++.....+ +|..-|.++.-++++++|+.-|++++.+--+ -+-.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d------vYyHRgQm~flL~q~e~A~aDF~Kai~L~pe------~~~~ 430 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPD------VYYHRGQMRFLLQQYEEAIADFQKAISLDPE------NAYA 430 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc------hhHhHHHHHHHHHHHHHHHHHHHHHhhcChh------hhHH
Confidence 556667777777777777777777777655433 6666677777777777777777777655221 1223
Q ss_pred HHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 143 LEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 143 l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 210 (325)
+..++-.....+ ++++...++++..-|+.. .++++-.|.++..++++++|++.|..++++-+
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~------~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKKFPNC------PEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------chHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 334443333333 666666666665554432 34555566666666666666666666666543
No 58
>KOG1173|consensus
Probab=98.93 E-value=5.2e-08 Score=90.86 Aligned_cols=210 Identities=10% Similarity=-0.023 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q psy10061 56 YDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGN 135 (325)
Q Consensus 56 ~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~ 135 (325)
|++-+-.+.-.|..|...|++++|..+|.++-.+-.+.| .++...|..|.-.|..++|+.+|..|..++....-
T Consensus 308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg------paWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl 381 (611)
T KOG1173|consen 308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG------PAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL 381 (611)
T ss_pred CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc------HHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc
Confidence 333333344556777788999999999999877666554 35667788888889999999999999998877665
Q ss_pred HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q psy10061 136 REAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH 214 (325)
Q Consensus 136 ~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 214 (325)
+. .-+|.=|...+ +..|-.+|.+|+.+++... -+++.+|.+....+.|.+|..+|+.++....+...
T Consensus 382 P~------LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dp------lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~ 449 (611)
T KOG1173|consen 382 PS------LYLGMEYMRTNNLKLAEKFFKQALAIAPSDP------LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN 449 (611)
T ss_pred hH------HHHHHHHHHhccHHHHHHHHHHHHhcCCCcc------hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc
Confidence 53 34666666555 9999999999999988652 47889999999999999999999999977766543
Q ss_pred --HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcChhhhcccH
Q psy10061 215 --LLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALNDPFIKHMDV 286 (325)
Q Consensus 215 --~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~~~~~~l~~ 286 (325)
..+. -.+.+||.++...+.+.+|+.+|+++ ..-... ..+...++=.+ -.|..+.+.++..+++.-..+.
T Consensus 450 e~~~w~-p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~--~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 450 EKIFWE-PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD--ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred cccchh-HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc--hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 2233 36789999999999999999999998 222222 34555666666 4899999999988855444433
No 59
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.93 E-value=4.3e-08 Score=87.49 Aligned_cols=218 Identities=16% Similarity=0.087 Sum_probs=100.0
Q ss_pred hhhhhhHHHHH-Hhhchh-----cccc------ccccHHHHHHHHHHHHhhhcccc--------cCCCCCHHHHHHHHHH
Q psy10061 6 KKEEGMEYVKS-AEKHSL-----STMT------SDRKKEEGMEYVKSAEKHLKTSL--------LKWKPDYDSAADDYSK 65 (325)
Q Consensus 6 ~~~~~~~~~~~-ae~~~~-----~~~~------~~~~~~eA~~l~~~A~~~~~~~~--------~~~~~~~~~A~~~y~~ 65 (325)
++.+|.+.+++ +.+... .|.. ..+++++|++.|.+..+.-+... ....+++++|.+.+.+
T Consensus 23 ~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~~~~A~~~~~~ 102 (280)
T PF13429_consen 23 DYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGDPEEALKLAEK 102 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 46777777744 344311 2321 12578888888888766544310 1124666666655443
Q ss_pred -------------HHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 66 -------------AATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLE 132 (325)
Q Consensus 66 -------------a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~ 132 (325)
++.++...++++++...+.++.. ..........+...|.++.+.|++++|+.+|++|+++...
T Consensus 103 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~ 178 (280)
T PF13429_consen 103 AYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEE----LPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD 178 (280)
T ss_dssp ---------------H-HHHTT-HHHHHHHHHHHHH-----T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT
T ss_pred ccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHh----ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 35677888999999988888653 2222345678899999999999999999999999877543
Q ss_pred cCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 133 QGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 133 ~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 211 (325)
.. .+...++.++...+ ++++.+.+.......+... ..+..+|.+|..+|++++|+.+|++++...+.
T Consensus 179 ~~------~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~------~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 179 DP------DARNALAWLLIDMGDYDEAREALKRLLKAAPDDP------DLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp -H------HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC------CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred CH------HHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH------HHHHHHHHHhcccccccccccccccccccccc
Confidence 22 24667787888777 8887777766665554332 25567899999999999999999998764221
Q ss_pred cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 212 SEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 212 ~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
++ ..+..++.++...|+.++|...++++
T Consensus 247 --d~----~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 --DP----LWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp ---H----HHHHHHHHHHT---------------
T ss_pred --cc----cccccccccccccccccccccccccc
Confidence 22 35567999999999999999998875
No 60
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.90 E-value=1e-07 Score=87.83 Aligned_cols=192 Identities=16% Similarity=0.074 Sum_probs=129.4
Q ss_pred ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIM 108 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~ 108 (325)
+++.++..-+.++.+..... .+ ..+....-+.++...|++++|...+.++++.... +. .++.. +.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~-------~~-~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~--~~----~a~~~-~~ 84 (355)
T cd05804 20 GERPAAAAKAAAAAQALAAR-------AT-ERERAHVEALSAWIAGDLPKALALLEQLLDDYPR--DL----LALKL-HL 84 (355)
T ss_pred CCcchHHHHHHHHHHHhccC-------CC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cH----HHHHH-hH
Confidence 46677777777766655431 11 2222223466677889999999999888776432 21 12222 44
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy10061 109 MCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAAR 187 (325)
Q Consensus 109 ~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~ 187 (325)
.+...|++..+.....+++.. ...+.......+..+|.++...+ +++|+..+++++++.+.. ..++..+|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~------~~~~~~la~ 156 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD------AWAVHAVAH 156 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------cHHHHHHHH
Confidence 455555555444444454443 33444555566778888888887 999999999999876553 346778899
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 188 MCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 188 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
++...|++++|+.++++++...+. .+......+..++.+++..|++++|...|++.
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999998876543 12222345667899999999999999999986
No 61
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.89 E-value=7.4e-07 Score=92.40 Aligned_cols=247 Identities=12% Similarity=0.095 Sum_probs=148.4
Q ss_pred hhhhhhHHHHHHhhchh-----cc------ccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcC
Q psy10061 6 KKEEGMEYVKSAEKHSL-----ST------MTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAK 74 (325)
Q Consensus 6 ~~~~~~~~~~~ae~~~~-----~~------~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g 74 (325)
++.+|.+++.++.+..- .| +...+++++|.++|.+..+. ++ .+| ...|+.+...|...|
T Consensus 487 ~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~---Gv---~PD----~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK---NV---KPD----RVVFNALISACGQSG 556 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc---CC---CCC----HHHHHHHHHHHHHCC
Confidence 45667777777765211 11 12235777777777765321 11 122 234555566666666
Q ss_pred CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HHHHHcCCHHHH
Q psy10061 75 SFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAA---------------TLFLEQGNREAA 139 (325)
Q Consensus 75 ~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~---------------~~~~~~g~~~~a 139 (325)
++++|.+.|.++......+. +. ...|..+...|.+.|++++|.+.|+... ..|.+.|+.+.+
T Consensus 557 ~~deA~~lf~eM~~~~~gi~-PD--~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deA 633 (1060)
T PLN03218 557 AVDRAFDVLAEMKAETHPID-PD--HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633 (1060)
T ss_pred CHHHHHHHHHHHHHhcCCCC-Cc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Confidence 66666666665543211110 00 2355555666666666666666555432 223344444444
Q ss_pred HHH---------------HHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061 140 STV---------------LEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIR 203 (325)
Q Consensus 140 a~~---------------l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 203 (325)
... |..+...|...+ +++|.+.+.+..+. +.... ..+++.+...|.+.|++++|..+|+
T Consensus 634 l~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~----G~~pd-~~tynsLI~ay~k~G~~eeA~~lf~ 708 (1060)
T PLN03218 634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ----GIKLG-TVSYSSLMGACSNAKNWKKALELYE 708 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 444 334444455555 78888877776532 22222 2478889999999999999999988
Q ss_pred HHHHHHHHcc-cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh--cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 204 QEIGYHQESE-HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW--GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 204 ~al~~~~~~~-~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~--~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
+.... + .+. ...|+.+...|...|++++|.+.|++. ..+.. ...+...|+.++ ..|+.+.+...+..
T Consensus 709 eM~~~----g~~Pd--vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P--d~~Ty~sLL~a~~k~G~le~A~~l~~~ 779 (1060)
T PLN03218 709 DIKSI----KLRPT--VSTMNALITALCEGNQLPKALEVLSEMKRLGLCP--NTITYSILLVASERKDDADVGLDLLSQ 779 (1060)
T ss_pred HHHHc----CCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 76432 2 222 246788999999999999999999987 33322 234556667777 58999999998876
No 62
>KOG1129|consensus
Probab=98.86 E-value=7.9e-09 Score=90.45 Aligned_cols=196 Identities=17% Similarity=0.136 Sum_probs=132.1
Q ss_pred cHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q psy10061 30 KKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMM 109 (325)
Q Consensus 30 ~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~ 109 (325)
+.--.+.++++|.+.++.++.+ ..-.+.|--+..+|....+...|+..+.+.++.+. +-...+..++.+
T Consensus 231 kCylrLgm~r~AekqlqssL~q-----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP------~~VT~l~g~ARi 299 (478)
T KOG1129|consen 231 KCYLRLGMPRRAEKQLQSSLTQ-----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP------FDVTYLLGQARI 299 (478)
T ss_pred HHHHHhcChhhhHHHHHHHhhc-----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC------chhhhhhhhHHH
Confidence 3333445555555555443321 11234566777777777777777777776665543 223345556666
Q ss_pred HHHcCCHHHHHHHHHHHHHHHH--------------HcCCHHHHHH--------------HHHHHHHHHhccC-HHHHHH
Q psy10061 110 CKELNDLTDVENLAKQAATLFL--------------EQGNREAAST--------------VLEKGAKSLEELK-SDAALT 160 (325)
Q Consensus 110 y~~~g~~~eA~~~~~~A~~~~~--------------~~g~~~~aa~--------------~l~~lg~~~~~~~-~~~A~~ 160 (325)
|..++++++|+++|+.+++... -.++++-+.. .+.|+|.+..--+ +|-++.
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHH
Confidence 6666666666666666654311 1133444443 3456666655444 999999
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy10061 161 LYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEK 240 (325)
Q Consensus 161 ~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~ 240 (325)
++++|+...... ..++++|.++|.+.+..|++.-|..+|+-+|.- ....+.+++|++++-...|+..+|..
T Consensus 380 sf~RAlstat~~---~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~------d~~h~ealnNLavL~~r~G~i~~Ars 450 (478)
T KOG1129|consen 380 SFQRALSTATQP---GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS------DAQHGEALNNLAVLAARSGDILGARS 450 (478)
T ss_pred HHHHHHhhccCc---chhhhhhhccceeEEeccchHHHHHHHHHHhcc------CcchHHHHHhHHHHHhhcCchHHHHH
Confidence 999999887654 445789999999999999999999999877652 12344688999999999999999999
Q ss_pred HHHhh
Q psy10061 241 AFKEW 245 (325)
Q Consensus 241 ~~~~~ 245 (325)
+++.+
T Consensus 451 ll~~A 455 (478)
T KOG1129|consen 451 LLNAA 455 (478)
T ss_pred HHHHh
Confidence 99986
No 63
>KOG2003|consensus
Probab=98.85 E-value=2.6e-07 Score=84.30 Aligned_cols=224 Identities=15% Similarity=0.114 Sum_probs=153.6
Q ss_pred ccccHHHHHHHHHHHHhhhcc------------cccCCCCCHHHHHHHHHHHH--------------HHHHhcCCHHHHH
Q psy10061 27 SDRKKEEGMEYVKSAEKHLKT------------SLLKWKPDYDSAADDYSKAA--------------TCFKGAKSFQQCK 80 (325)
Q Consensus 27 ~~~~~~eA~~l~~~A~~~~~~------------~~~~~~~~~~~A~~~y~~a~--------------~~y~~~g~~~~A~ 80 (325)
..++++.|++.++--.+.-.+ .+++.++++.+|..+-..+. ++-...|++++|.
T Consensus 431 k~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~ 510 (840)
T KOG2003|consen 431 KNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAA 510 (840)
T ss_pred hccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHH
Confidence 345777777766532221111 01223567776666555553 2334567899999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHH
Q psy10061 81 EYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAAL 159 (325)
Q Consensus 81 ~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~ 159 (325)
+.|.+++ .+......++.|+|..+..+|+.++|++++-+.-.|.+. -++++..++.+|+... +.+|+
T Consensus 511 ~~ykeal------~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~n------n~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 511 EFYKEAL------NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN------NAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred HHHHHHH------cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHhhCHHHHH
Confidence 9998875 345566789999999999999999999999888777553 3568999999999876 99999
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy10061 160 TLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAE 239 (325)
Q Consensus 160 ~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~ 239 (325)
++|.++..+.... ..++.++|.+|-+-|+-.+|+.++-..-..++..- ....-++..|+...=.++|+
T Consensus 579 e~~~q~~slip~d------p~ilskl~dlydqegdksqafq~~ydsyryfp~ni------e~iewl~ayyidtqf~ekai 646 (840)
T KOG2003|consen 579 ELLMQANSLIPND------PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNI------ETIEWLAAYYIDTQFSEKAI 646 (840)
T ss_pred HHHHHhcccCCCC------HHHHHHHHHHhhcccchhhhhhhhhhcccccCcch------HHHHHHHHHHHhhHHHHHHH
Confidence 9999998776543 36889999999999999999999877666554321 11123566777777789999
Q ss_pred HHHHhhcccC-CChHHHHHHHHHHHH-hcCCHHHHHHHh
Q psy10061 240 KAFKEWGNCC-EAPEVQTLEKLLQAF-DEEDPEGARQAL 276 (325)
Q Consensus 240 ~~~~~~~~~~-~~~e~~~l~~L~~a~-~~gd~~~~~~~~ 276 (325)
.+|+++.... ....+.++ +...+ ..|+-..+-+..
T Consensus 647 ~y~ekaaliqp~~~kwqlm--iasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 647 NYFEKAALIQPNQSKWQLM--IASCFRRSGNYQKAFDLY 683 (840)
T ss_pred HHHHHHHhcCccHHHHHHH--HHHHHHhcccHHHHHHHH
Confidence 9999973332 22233332 22333 366666555443
No 64
>KOG1125|consensus
Probab=98.83 E-value=9.2e-08 Score=89.47 Aligned_cols=196 Identities=13% Similarity=0.049 Sum_probs=142.5
Q ss_pred ccHHHHHHHHHHHHhhhcccc-c--CCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSL-L--KWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQ 105 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~-~--~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~ 105 (325)
+=|++.+.++++.. +....+ | .-++| ++-++.+..+|.+....++-..|+.++++|+++-... -.++..
T Consensus 287 dPf~eG~~lm~nG~-L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~N------leaLma 358 (579)
T KOG1125|consen 287 DPFKEGCNLMKNGD-LSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTN------LEALMA 358 (579)
T ss_pred ChHHHHHHHHhcCC-chHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCcc------HHHHHH
Confidence 34666666666544 222211 0 00122 4456778888999999999999999999998776532 347888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH--------------------------------------HHcCCHHHHHHHHHHHH
Q psy10061 106 AIMMCKELNDLTDVENLAKQAATLF--------------------------------------LEQGNREAASTVLEKGA 147 (325)
Q Consensus 106 ~~~~y~~~g~~~eA~~~~~~A~~~~--------------------------------------~~~g~~~~aa~~l~~lg 147 (325)
++..|...|.-.+|..++.+.+... +..+. ..-..+..-||
T Consensus 359 LAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~-~~DpdvQ~~LG 437 (579)
T KOG1125|consen 359 LAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT-KIDPDVQSGLG 437 (579)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC-CCChhHHhhhH
Confidence 8888998888888888888875431 11110 01122345578
Q ss_pred HHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q psy10061 148 KSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALV 226 (325)
Q Consensus 148 ~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 226 (325)
.+|...+ |++|+.||+.||..-+.. ...+++||..+....+..+|+..|++|+.+.+.- . ++.+++|
T Consensus 438 VLy~ls~efdraiDcf~~AL~v~Pnd------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y----V--R~RyNlg 505 (579)
T KOG1125|consen 438 VLYNLSGEFDRAVDCFEAALQVKPND------YLLWNRLGATLANGNRSEEAISAYNRALQLQPGY----V--RVRYNLG 505 (579)
T ss_pred HHHhcchHHHHHHHHHHHHHhcCCch------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe----e--eeehhhh
Confidence 8888777 999999999999765443 3589999999999999999999999999984321 1 3557999
Q ss_pred HHHHhcCCHHHHHHHHHhh
Q psy10061 227 LVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 227 ~~~~~~gd~~~A~~~~~~~ 245 (325)
++|...|.|.+|.++|-.+
T Consensus 506 IS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 506 ISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred hhhhhhhhHHHHHHHHHHH
Confidence 9999999999999999996
No 65
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.82 E-value=8.6e-07 Score=71.06 Aligned_cols=135 Identities=16% Similarity=0.063 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Q psy10061 57 DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNR 136 (325)
Q Consensus 57 ~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~ 136 (325)
..+...|..+...+. .+++..+...+..... ..++..-+..+...++.++...|++++|+..|+.++.-. .+.
T Consensus 9 ~~a~~~y~~~~~~~~-~~~~~~~~~~~~~l~~---~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~ 81 (145)
T PF09976_consen 9 EQASALYEQALQALQ-AGDPAKAEAAAEQLAK---DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDP 81 (145)
T ss_pred HHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCH
Confidence 445555555555542 5555555443333322 223333445555556666666666666666666665421 333
Q ss_pred HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061 137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQE 205 (325)
Q Consensus 137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 205 (325)
.-...+..+++.++...+ +++|+..++. ..+...........|.+|...|++++|+..|+++
T Consensus 82 ~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-------~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 82 ELKPLARLRLARILLQQGQYDEALATLQQ-------IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHh-------ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 333334445555555544 5555555533 1111222334445555666666666665555554
No 66
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.82 E-value=5.1e-07 Score=89.56 Aligned_cols=168 Identities=8% Similarity=-0.034 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Q psy10061 60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAA 139 (325)
Q Consensus 60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~a 139 (325)
-+..+++-.+....+....+...+-++.+..+.. ...+.++.+++.+....|++++|..+++.++++.-. -
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd------~ 119 (694)
T PRK15179 49 RELLQQARQVLERHAAVHKPAAALPELLDYVRRY---PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD------S 119 (694)
T ss_pred HHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhc---cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC------c
Confidence 4667777777777777777777777777776643 334778999999999999999999999999877432 2
Q ss_pred HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHH
Q psy10061 140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI 218 (325)
Q Consensus 140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 218 (325)
+.+..+++.++...+ +++|+..+++++...... ...+..+|.++.++|+|++|+.+|++++.- . + ..
T Consensus 120 ~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--~---p-~~ 187 (694)
T PRK15179 120 SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS------AREILLEAKSWDEIGQSEQADACFERLSRQ--H---P-EF 187 (694)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHhcchHHHHHHHHHHHhc--C---C-Cc
Confidence 335777888888777 999999999998765443 457888999999999999999999998861 1 1 22
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh-ccc
Q psy10061 219 GRLAVALVLVQLARGDTVAAEKAFKEW-GNC 248 (325)
Q Consensus 219 ~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~ 248 (325)
..++.++|.++...|+.++|...|+++ ..+
T Consensus 188 ~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 188 ENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 357788999999999999999999997 444
No 67
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.78 E-value=2.9e-06 Score=88.10 Aligned_cols=221 Identities=8% Similarity=0.025 Sum_probs=129.1
Q ss_pred chhhhhhHHHHHHhhchh-c----c------ccccccHHHHHHHHHHHHhhhcc---c------c---cCCCCCHHHHHH
Q psy10061 5 RKKEEGMEYVKSAEKHSL-S----T------MTSDRKKEEGMEYVKSAEKHLKT---S------L---LKWKPDYDSAAD 61 (325)
Q Consensus 5 ~~~~~~~~~~~~ae~~~~-~----~------~~~~~~~~eA~~l~~~A~~~~~~---~------~---~~~~~~~~~A~~ 61 (325)
.++.+|.+++.++.+..- . | +...+++++|.++|.+....-.. . + +...+++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 346778888877754211 0 1 12236788888888887542110 0 0 000233333333
Q ss_pred HHHHH---------------HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061 62 DYSKA---------------ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQA 126 (325)
Q Consensus 62 ~y~~a---------------~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A 126 (325)
.|..+ ...|.+.|++++|...|.++...--. +. ...|..+...|.+.|++++|...++..
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~---PD--~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK---PD--EVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CC--HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 33322 33444555555555555443321100 00 234555555555555555555555554
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061 127 ATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQE 205 (325)
Q Consensus 127 ~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 205 (325)
.+ .|-... ..+++.+...|...+ +++|.+.|++.... +-... ..+|+.+...|.+.|++++|+++|++.
T Consensus 676 ~k----~G~~pd-~~tynsLI~ay~k~G~~eeA~~lf~eM~~~----g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 676 RK----QGIKLG-TVSYSSLMGACSNAKNWKKALELYEDIKSI----KLRPT-VSTMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred HH----cCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 32 221111 225666677777777 99999999876532 21122 357999999999999999999999987
Q ss_pred HHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 206 IGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 206 l~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
... +-.. ....|..+...+...|+++.|.+.|.+.
T Consensus 746 ~~~----Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M 780 (1060)
T PLN03218 746 KRL----GLCP-NTITYSILLVASERKDDADVGLDLLSQA 780 (1060)
T ss_pred HHc----CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 542 2111 1246677889999999999999999998
No 68
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.77 E-value=3.2e-07 Score=91.04 Aligned_cols=170 Identities=11% Similarity=0.005 Sum_probs=134.7
Q ss_pred hhHHHHHHhhchhccccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy10061 10 GMEYVKSAEKHSLSTMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANC 89 (325)
Q Consensus 10 ~~~~~~~ae~~~~~~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~ 89 (325)
+++++.+++..+.. .+...++.+.+-++..+. .+|..-.+.+..++.+-..+|.+++|...+..++++
T Consensus 48 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~ 115 (694)
T PRK15179 48 GRELLQQARQVLER----HAAVHKPAAALPELLDYV--------RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR 115 (694)
T ss_pred HHHHHHHHHHHHHH----hhhhcchHhhHHHHHHHH--------HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 36677777775543 234455555555555555 456666889999999999999999999999999887
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHH
Q psy10061 90 YETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADV 168 (325)
Q Consensus 90 ~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~ 168 (325)
.... ..+..+.+.+..+.+++++|+..+++++..-- .-+..+..+|.++...+ +++|+.+|++++.-
T Consensus 116 ~Pd~------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p------~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~ 183 (694)
T PRK15179 116 FPDS------SEAFILMLRGVKRQQGIEAGRAEIELYFSGGS------SSAREILLEAKSWDEIGQSEQADACFERLSRQ 183 (694)
T ss_pred CCCc------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC------CCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc
Confidence 7543 45788889999999999999999999986522 22457889999999998 99999999999972
Q ss_pred HhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 169 AHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH 209 (325)
Q Consensus 169 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 209 (325)
.-+ ...++.++|.++...|+.++|...|+++++..
T Consensus 184 --~p~----~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 184 --HPE----FENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred --CCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 111 24688899999999999999999999999875
No 69
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.75 E-value=3.1e-06 Score=79.78 Aligned_cols=234 Identities=13% Similarity=0.089 Sum_probs=126.3
Q ss_pred ccccHHHHHHHHHHHHhhhcccc---------cCCCCCHHHHHHHHHHH---------------HHHHHhcCCHHHHHHH
Q psy10061 27 SDRKKEEGMEYVKSAEKHLKTSL---------LKWKPDYDSAADDYSKA---------------ATCFKGAKSFQQCKEY 82 (325)
Q Consensus 27 ~~~~~~eA~~l~~~A~~~~~~~~---------~~~~~~~~~A~~~y~~a---------------~~~y~~~g~~~~A~~~ 82 (325)
..|+++.|.+.+.++.+...... ..-.++++.+.+.|.++ +.++...|++++|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34577777777777666543210 00125555555555543 3344456777777777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH------------------------
Q psy10061 83 LLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREA------------------------ 138 (325)
Q Consensus 83 ~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~------------------------ 138 (325)
+.+..+...+. ..++.-++.+|...|++++|.+.+.+..+.-. .+...
T Consensus 176 l~~l~~~~P~~------~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~--~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 176 VDKLLEMAPRH------KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL--FDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHhCCCC------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 66665554321 24566777778888888877777666553200 00000
Q ss_pred --------------HHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061 139 --------------ASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIR 203 (325)
Q Consensus 139 --------------aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 203 (325)
.......++..+...+ +++|+..++++++......... ...+ ........++.+++++.++
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~--~~~l--~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS--LPLC--LPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch--hHHH--HHhhhcCCCChHHHHHHHH
Confidence 1112222333333334 5666666655555444321110 0011 1111222345555555555
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh--cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 204 QEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW--GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 204 ~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~--~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
+++...+. ++ .+.++..+|.+++..|++++|.++|+++ -...+..+ ....|++.+ ..|+.+++.+.+++
T Consensus 324 ~~lk~~p~--~~--~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~--~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 324 KQAKNVDD--KP--KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN--DLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHhCCC--Ch--hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH--HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55443211 11 1246678999999999999999999963 22222222 344778887 59999999999887
No 70
>KOG0547|consensus
Probab=98.73 E-value=1.9e-07 Score=85.85 Aligned_cols=204 Identities=15% Similarity=0.084 Sum_probs=149.3
Q ss_pred cccccccHHHHHHHHHHHHhhhcccc---------cCCCCCHHHHHHHHH--------------HHHHHHHhcCCHHHHH
Q psy10061 24 TMTSDRKKEEGMEYVKSAEKHLKTSL---------LKWKPDYDSAADDYS--------------KAATCFKGAKSFQQCK 80 (325)
Q Consensus 24 ~~~~~~~~~eA~~l~~~A~~~~~~~~---------~~~~~~~~~A~~~y~--------------~a~~~y~~~g~~~~A~ 80 (325)
|.+..|++..|.+.+.++.++..+-. ..-..+-+.-...|+ .=|.++..++++++|+
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHH
Confidence 55556788889999998887665411 000223333333344 4466777888999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHH
Q psy10061 81 EYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAAL 159 (325)
Q Consensus 81 ~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~ 159 (325)
.-|.++..+... -+..|.+++-+..++++++++...++.+..- +....++++-.|.++..++ +++|+
T Consensus 415 aDF~Kai~L~pe------~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk------FP~~~Evy~~fAeiLtDqqqFd~A~ 482 (606)
T KOG0547|consen 415 ADFQKAISLDPE------NAYAYIQLCCALYRQHKIAESMKTFEEAKKK------FPNCPEVYNLFAEILTDQQQFDKAV 482 (606)
T ss_pred HHHHHHhhcChh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCCchHHHHHHHHHhhHHhHHHHH
Confidence 999998876543 3567888888888889999999999988654 5566778999999999887 99999
Q ss_pred HHHHHHHHHHhcCCCh-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHH
Q psy10061 160 TLYSRAADVAHGEDNY-KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAA 238 (325)
Q Consensus 160 ~~y~~Al~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A 238 (325)
+.|.+|+++-...+-. .+.+-...+.-.++.-.+++..|+.++++++++-++. . .++..+|.+-+.+|+.++|
T Consensus 483 k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkc----e--~A~~tlaq~~lQ~~~i~eA 556 (606)
T KOG0547|consen 483 KQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKC----E--QAYETLAQFELQRGKIDEA 556 (606)
T ss_pred HHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchH----H--HHHHHHHHHHHHHhhHHHH
Confidence 9999999998764322 2322222233334445589999999999999874332 2 3567899999999999999
Q ss_pred HHHHHhh
Q psy10061 239 EKAFKEW 245 (325)
Q Consensus 239 ~~~~~~~ 245 (325)
+++|+++
T Consensus 557 ielFEks 563 (606)
T KOG0547|consen 557 IELFEKS 563 (606)
T ss_pred HHHHHHH
Confidence 9999997
No 71
>KOG0548|consensus
Probab=98.72 E-value=2.9e-06 Score=78.98 Aligned_cols=174 Identities=15% Similarity=0.105 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCHH
Q psy10061 59 AADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ-GNRE 137 (325)
Q Consensus 59 A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~-g~~~ 137 (325)
.+.-+..+|+......++..++.+|..++++...++ .+.+.+-+|...|.+.+.+.....+++.-++. -++.
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it-------~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~k 295 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELATDIT-------YLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYK 295 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhH-------HHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHH
Confidence 566778899999999999999999999998884443 56677777777888888877777777665544 3455
Q ss_pred HHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCCh--------------------hhHHHHHHHHHHHHHHcCCHH
Q psy10061 138 AASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY--------------------KQAAEYISRAARMCVRVKEFD 196 (325)
Q Consensus 138 ~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~--------------------~~~~~~~~~lg~~~~~~g~~~ 196 (325)
-.+.++..+|..|...+ ++.++.+|++++.-++.-... ...+.-...-|.-+...|+|.
T Consensus 296 lIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 296 LIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred HHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHH
Confidence 57778888999999887 999999999998877651100 011233455688899999999
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 197 KAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 197 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.|+.+|.++|... ..-+.+|-|.+.||+..|.+..|+...+.+
T Consensus 376 ~Av~~YteAIkr~------P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ 418 (539)
T KOG0548|consen 376 EAVKHYTEAIKRD------PEDARLYSNRAACYLKLGEYPEALKDAKKC 418 (539)
T ss_pred HHHHHHHHHHhcC------CchhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999988743 223467889999999999999999998887
No 72
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.71 E-value=5.5e-07 Score=74.04 Aligned_cols=115 Identities=13% Similarity=0.020 Sum_probs=88.8
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCC
Q psy10061 95 SAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGED 173 (325)
Q Consensus 95 ~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~ 173 (325)
.....+.++.++|.++..+|++++|+.++++++.+.. +....+.++.++|.++...+ +++|+.+|++++.+.+...
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~ 106 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP 106 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 3445678889999999999999999999999988742 33344568999999999988 9999999999998855432
Q ss_pred C-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 174 N-YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES 212 (325)
Q Consensus 174 ~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 212 (325)
. ....+.++..+|.++..+|+++.|+..+.+++..+++.
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a 146 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA 146 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 1 22334455555555559999999999999998887654
No 73
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.70 E-value=3.7e-06 Score=67.32 Aligned_cols=134 Identities=23% Similarity=0.132 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChh
Q psy10061 98 HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYK 176 (325)
Q Consensus 98 ~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~ 176 (325)
.+...|..+...+. .++...+...+++.+ ...++..-+..+...+|.++...+ +++|+..|+++++.. .+..
T Consensus 10 ~a~~~y~~~~~~~~-~~~~~~~~~~~~~l~---~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~ 82 (145)
T PF09976_consen 10 QASALYEQALQALQ-AGDPAKAEAAAEQLA---KDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPE 82 (145)
T ss_pred HHHHHHHHHHHHHH-CCCHHHHHHHHHHHH---HHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHH
Confidence 34445555555543 577777655555443 344555556667777888888776 999999999988744 3334
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 177 QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 177 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
....+..+++.++...|+|++|+..++.. ......+.++...|.+++..|++++|...|+++
T Consensus 83 l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 83 LKPLARLRLARILLQQGQYDEALATLQQI-------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhc-------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 44557778999999999999999988552 222234456677999999999999999999864
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.68 E-value=2.4e-06 Score=78.63 Aligned_cols=201 Identities=12% Similarity=0.020 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Q psy10061 60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAA 139 (325)
Q Consensus 60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~a 139 (325)
...|.-++.++...|+++.+...+.++.......-+..+ .....+.++...|++++|...++++++.... +. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e---~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~--~~-~- 78 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERE---RAHVEALSAWIAGDLPKALALLEQLLDDYPR--DL-L- 78 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cH-H-
Confidence 345666778888899999998888888877764433332 2334566778889999999999999876322 21 1
Q ss_pred HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHH
Q psy10061 140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI 218 (325)
Q Consensus 140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 218 (325)
.+.. +..+...+ +..+.....+++.. ...........+..+|.++..+|++++|+..+++++.+.+..
T Consensus 79 --a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~------ 147 (355)
T cd05804 79 --ALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD------ 147 (355)
T ss_pred --HHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------
Confidence 1221 22222221 22222223333333 222334445677789999999999999999999999875332
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChH--HHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 219 GRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPE--VQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 219 ~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e--~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
...+..+|.++...|++++|..++++. +....... ......++..+ ..|+.+.+...+.+
T Consensus 148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 245678999999999999999999997 33321111 22333566665 69999999888876
No 75
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.67 E-value=4.5e-07 Score=72.61 Aligned_cols=97 Identities=11% Similarity=-0.060 Sum_probs=72.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHH
Q psy10061 103 LEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEY 181 (325)
Q Consensus 103 ~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~ 181 (325)
+...|.++...|++++|+.+|++++.+-. .-..++..+|.++...+ +++|+.+|++++.+.... ..+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P------~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~------~~a 94 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQP------WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH------PEP 94 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC------cHH
Confidence 34567777888888888888888775521 12346788888888777 888888888888764432 357
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 182 ISRAARMCVRVKEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 182 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 211 (325)
+.++|.++..+|++++|+..|++++.+.+.
T Consensus 95 ~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 95 VYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 778888888888888888888888876443
No 76
>KOG2076|consensus
Probab=98.67 E-value=1.2e-05 Score=79.00 Aligned_cols=131 Identities=15% Similarity=0.148 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH
Q psy10061 137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL 215 (325)
Q Consensus 137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 215 (325)
......+..++..|...+ +++|+.++........-. .+.+|.++|.+|..+|.|++|+..|++++.+.+..-
T Consensus 411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~-----~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~-- 483 (895)
T KOG2076|consen 411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ-----NAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNL-- 483 (895)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc-----chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCch--
Confidence 333444556666666665 777777776655432221 145889999999999999999999999998754321
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHhh--------cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 216 LAIGRLAVALVLVQLARGDTVAAEKAFKEW--------GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 216 ~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~--------~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
.+...|..++..+|++++|.+.+.+. +......+.+++....+.+ ..|+.+.+......
T Consensus 484 ----D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~ 551 (895)
T KOG2076|consen 484 ----DARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAST 551 (895)
T ss_pred ----hhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 23457899999999999999999994 2234556777887778876 58998887765443
No 77
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.65 E-value=1.8e-06 Score=72.94 Aligned_cols=133 Identities=13% Similarity=0.035 Sum_probs=95.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH-HH
Q psy10061 113 LNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARM-CV 190 (325)
Q Consensus 113 ~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~-~~ 190 (325)
.++.++++..+++++..-- ++ +..+..+|.+|...+ +++|+.+|++|+.+.... ..++..+|.+ +.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P--~~----~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~------~~~~~~lA~aL~~ 119 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP--QN----SEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN------AELYAALATVLYY 119 (198)
T ss_pred chhHHHHHHHHHHHHHHCC--CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 4566777777777765422 22 336888999998887 999999999999887643 3577888886 46
Q ss_pred HcCC--HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-ccc-CCChHHHHHHHHHHH
Q psy10061 191 RVKE--FDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNC-CEAPEVQTLEKLLQA 263 (325)
Q Consensus 191 ~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~-~~~~e~~~l~~L~~a 263 (325)
..|+ +++|...+++++...+. ...++..+|.+++..|++++|+.+|++. ... .+.....++..+-.+
T Consensus 120 ~~g~~~~~~A~~~l~~al~~dP~------~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~i~~a 190 (198)
T PRK10370 120 QAGQHMTPQTREMIDKALALDAN------EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVESINMA 190 (198)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCC------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Confidence 7777 58999999999886332 1246678999999999999999999997 222 233344455554444
No 78
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.65 E-value=7.1e-06 Score=77.05 Aligned_cols=97 Identities=16% Similarity=0.085 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------Hc--ccH--------------HHHHHHHHHHHHHHHhcCC
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQ---------ES--EHL--------------LAIGRLAVALVLVQLARGD 234 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---------~~--~~~--------------~~~~~~~~~lg~~~~~~gd 234 (325)
.+...++..+...|+.++|...+++++.... .+ +++ ......++.+|.+++..|+
T Consensus 264 ~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~ 343 (398)
T PRK10747 264 ALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGE 343 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Confidence 4555677788888888888888877765210 00 110 0112346677888888888
Q ss_pred HHHHHHHHHhhcccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 235 TVAAEKAFKEWGNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 235 ~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
+++|.++|++.-...++.+ ....|+.++ ..|+++.+..+.++
T Consensus 344 ~~~A~~~le~al~~~P~~~--~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 344 WQEASLAFRAALKQRPDAY--DYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888888722222222 233466666 47888888777665
No 79
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.64 E-value=1.8e-06 Score=86.91 Aligned_cols=93 Identities=11% Similarity=-0.029 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHH
Q psy10061 181 YISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEK 259 (325)
Q Consensus 181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~ 259 (325)
+|+.+...|.+.|+.++|+++|++.... |-.. ...++..+..++...|+.++|.+.|+.. ..+.-........-
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~----g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~ 467 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAE----GVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence 4556666666666666666666665432 2111 1134566666667777777777777765 22221122223444
Q ss_pred HHHHH-hcCCHHHHHHHhcC
Q psy10061 260 LLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 260 L~~a~-~~gd~~~~~~~~~~ 278 (325)
|++.+ ..|+.+++.+.+++
T Consensus 468 li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHH
Confidence 56666 47777777777665
No 80
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.62 E-value=1.9e-06 Score=70.86 Aligned_cols=115 Identities=11% Similarity=0.018 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q psy10061 55 DYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQG 134 (325)
Q Consensus 55 ~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g 134 (325)
+-+..+.+|...|.++...|++++|...|.+++.+.. ++...+.++.++|.+|...|++++|+.++++++.+....+
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~ 106 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP 106 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 3466788899999999999999999999999998753 3344567899999999999999999999999998754433
Q ss_pred C-HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC
Q psy10061 135 N-REAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE 172 (325)
Q Consensus 135 ~-~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~ 172 (325)
. ....+.++.++|..+...+ ++.|+..+.+++.+++..
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a 146 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA 146 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 2 2233344444444444665 888888888777776653
No 81
>KOG0550|consensus
Probab=98.60 E-value=4.5e-06 Score=75.56 Aligned_cols=130 Identities=12% Similarity=0.046 Sum_probs=96.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHc---C---CHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHH
Q psy10061 108 MMCKELNDLTDVENLAKQAATLFLEQ---G---NREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAE 180 (325)
Q Consensus 108 ~~y~~~g~~~eA~~~~~~A~~~~~~~---g---~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~ 180 (325)
.++.-.++.+.++.++++++.+-... + ..........+-|+-....+ +..|.++|.+||.+-+... ...+.
T Consensus 211 ~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~--~~nak 288 (486)
T KOG0550|consen 211 LCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK--KTNAK 288 (486)
T ss_pred cccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc--chhHH
Confidence 33444456777778888877653222 1 11222333444455555555 9999999999999887743 33467
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 181 YISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
+|.+.+.+.+++|+..+|+.-+++++.|-.+ -.+++...+.||+..++++.|.+.|+++
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~iD~s------yikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKIDSS------YIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999987322 2357788999999999999999999998
No 82
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.60 E-value=1.4e-06 Score=69.80 Aligned_cols=104 Identities=13% Similarity=0.000 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHH
Q psy10061 121 NLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAA 199 (325)
Q Consensus 121 ~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 199 (325)
.++++++.+-.. .+...|.++...+ +++|+.+|++++.+-... ..++..+|.++..+|++++|+
T Consensus 14 ~~~~~al~~~p~---------~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~ 78 (144)
T PRK15359 14 DILKQLLSVDPE---------TVYASGYASWQEGDYSRAVIDFSWLVMAQPWS------WRAHIALAGTWMMLKEYTTAI 78 (144)
T ss_pred HHHHHHHHcCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHhhHHHHH
Confidence 456666655322 1345677877777 999999999998764432 468899999999999999999
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 200 DLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 200 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..|++++.+.+. -..+++++|.++...|++++|+..|+++
T Consensus 79 ~~y~~Al~l~p~------~~~a~~~lg~~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 79 NFYGHALMLDAS------HPEPVYQTGVCLKMMGEPGLAREAFQTA 118 (144)
T ss_pred HHHHHHHhcCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999986322 2246789999999999999999999997
No 83
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.58 E-value=5.1e-06 Score=68.57 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=83.1
Q ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc
Q psy10061 93 NKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHG 171 (325)
Q Consensus 93 ~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~ 171 (325)
.......+.++.+.|.+|...|++++|+.++++++.+.... ...+..+.++|.++...+ +++|+.+|++++.+...
T Consensus 28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 104 (172)
T PRK02603 28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP---NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK 104 (172)
T ss_pred cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 34556778899999999999999999999999998875432 223568899999999888 99999999999987543
Q ss_pred CCChhhHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHH
Q psy10061 172 EDNYKQAAEYISRAARMCVRVK-------EFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 172 ~~~~~~~~~~~~~lg~~~~~~g-------~~~~A~~~~~~al~~~~~ 211 (325)
. ...+..+|.++...| ++++|+..+++++..+++
T Consensus 105 ~------~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~ 145 (172)
T PRK02603 105 Q------PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQ 145 (172)
T ss_pred c------HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHH
Confidence 2 245556677776655 466666666666665544
No 84
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.58 E-value=1.1e-05 Score=75.68 Aligned_cols=199 Identities=9% Similarity=0.011 Sum_probs=125.9
Q ss_pred cccccHHHHHHHHHHHHhhhccc-c---------cCCCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHH
Q psy10061 26 TSDRKKEEGMEYVKSAEKHLKTS-L---------LKWKPDYDSAADDYSKA--------------ATCFKGAKSFQQCKE 81 (325)
Q Consensus 26 ~~~~~~~eA~~l~~~A~~~~~~~-~---------~~~~~~~~~A~~~y~~a--------------~~~y~~~g~~~~A~~ 81 (325)
...|++++|.+++.+|.+..... + ....++++.|...++++ +.+|...|+|+++.+
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~ 208 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD 208 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 33456777777777776644331 0 01146666666666654 567888899998886
Q ss_pred HHHHHHHHHHh----------------------cCCh--------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10061 82 YLLKAANCYET----------------------NKSA--------------YHAAKHLEQAIMMCKELNDLTDVENLAKQ 125 (325)
Q Consensus 82 ~~~~a~~~~~~----------------------~~~~--------------~~aa~~~~~~~~~y~~~g~~~eA~~~~~~ 125 (325)
.+.+....... ..+. ..-.......+..+...|+.++|....++
T Consensus 209 ~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~ 288 (398)
T PRK10747 209 ILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILD 288 (398)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66554432110 0000 01122334456667777777777777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061 126 AATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQE 205 (325)
Q Consensus 126 A~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 205 (325)
+++ ...+. ..+..+..+ ...++++++...++.++..+++ ...+..+|.++...|+|++|.++|+++
T Consensus 289 ~l~---~~~~~-~l~~l~~~l----~~~~~~~al~~~e~~lk~~P~~------~~l~l~lgrl~~~~~~~~~A~~~le~a 354 (398)
T PRK10747 289 GLK---RQYDE-RLVLLIPRL----KTNNPEQLEKVLRQQIKQHGDT------PLLWSTLGQLLMKHGEWQEASLAFRAA 354 (398)
T ss_pred HHh---cCCCH-HHHHHHhhc----cCCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 654 22232 111111111 1124888888888877655432 357778999999999999999999999
Q ss_pred HHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 206 IGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 206 l~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
+.+.+ .. ..+..++.++..+|+.++|.++|++.
T Consensus 355 l~~~P-----~~--~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 355 LKQRP-----DA--YDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HhcCC-----CH--HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88632 11 23456899999999999999999986
No 85
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.58 E-value=4.8e-06 Score=83.86 Aligned_cols=196 Identities=11% Similarity=-0.000 Sum_probs=124.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HHH
Q psy10061 66 AATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAA---------------TLF 130 (325)
Q Consensus 66 a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~---------------~~~ 130 (325)
+...|...|++++|...|.+....--.. -...|..+...|.+.|++++|...+.... +.|
T Consensus 296 li~~y~~~g~~~eA~~lf~~M~~~g~~p-----d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y 370 (697)
T PLN03081 296 MLAGYALHGYSEEALCLYYEMRDSGVSI-----DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY 370 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHH
Confidence 4556666677777766666653221111 12356666777777777777776665543 345
Q ss_pred HHcCCHHHHHHHHH-----------HHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHH
Q psy10061 131 LEQGNREAASTVLE-----------KGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKA 198 (325)
Q Consensus 131 ~~~g~~~~aa~~l~-----------~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 198 (325)
.+.|+.+.|...+. .+...|-..+ .++|++.+++..+. |-... ..++..+...+...|..++|
T Consensus 371 ~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~----g~~Pd-~~T~~~ll~a~~~~g~~~~a 445 (697)
T PLN03081 371 SKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE----GVAPN-HVTFLAVLSACRYSGLSEQG 445 (697)
T ss_pred HHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCC-HHHHHHHHHHHhcCCcHHHH
Confidence 56666666665543 4455565555 78888888776532 22222 24678888888999999999
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHH-hcCCHHHHHHHhc
Q psy10061 199 ADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAF-DEEDPEGARQALN 277 (325)
Q Consensus 199 ~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~ 277 (325)
..+|+...+.. +-.. ....|..++.++...|++++|.+.+++.+.-.+ ..+...|+.++ ..|+.+.+..+.+
T Consensus 446 ~~~f~~m~~~~---g~~p-~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~---~~~~~~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 446 WEIFQSMSENH---RIKP-RAMHYACMIELLGREGLLDEAYAMIRRAPFKPT---VNMWAALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred HHHHHHHHHhc---CCCC-CccchHhHHHHHHhcCCHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 99988776432 2111 123567788899999999999998887632221 33456677777 5888888877766
Q ss_pred C
Q psy10061 278 D 278 (325)
Q Consensus 278 ~ 278 (325)
+
T Consensus 519 ~ 519 (697)
T PLN03081 519 K 519 (697)
T ss_pred H
Confidence 4
No 86
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.57 E-value=1.9e-05 Score=68.87 Aligned_cols=175 Identities=14% Similarity=0.040 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Q psy10061 59 AADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREA 138 (325)
Q Consensus 59 A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~ 138 (325)
+...|.++-.. ...|+|++|++.|++....+.. ...+..+...+|.+|.+++++++|+.++++.+..+....+.
T Consensus 32 ~~~~Y~~A~~~-~~~g~y~~Ai~~f~~l~~~yP~---s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-- 105 (243)
T PRK10866 32 PSEIYATAQQK-LQDGNWKQAITQLEALDNRYPF---GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-- 105 (243)
T ss_pred HHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch--
Confidence 44456654444 4578888888888888776653 24556678899999999999999999999999887776554
Q ss_pred HHHHHHHHHHHHhcc----------------C---HHHHHHHHHHHHHHHhcCCChhhH-----------HHHHHHHHHH
Q psy10061 139 ASTVLEKGAKSLEEL----------------K---SDAALTLYSRAADVAHGEDNYKQA-----------AEYISRAARM 188 (325)
Q Consensus 139 aa~~l~~lg~~~~~~----------------~---~~~A~~~y~~Al~~~~~~~~~~~~-----------~~~~~~lg~~ 188 (325)
..++..+|..+... + ...|+..+++.++.++...-...+ +.--..+|..
T Consensus 106 -~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~ 184 (243)
T PRK10866 106 -DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEY 184 (243)
T ss_pred -HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666553111 2 356778888888887765321111 1112244555
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10061 189 CVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFK 243 (325)
Q Consensus 189 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~ 243 (325)
|.+.|+|..|+.-++.+++-++.... ...++..++.+|...|..+.|.....
T Consensus 185 Y~~~~~y~AA~~r~~~v~~~Yp~t~~---~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 185 YTKRGAYVAVVNRVEQMLRDYPDTQA---TRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHcCchHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 66666666666666666655544322 22345556666666666666655443
No 87
>PLN03077 Protein ECB2; Provisional
Probab=98.56 E-value=2e-05 Score=81.30 Aligned_cols=51 Identities=10% Similarity=0.005 Sum_probs=27.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061 68 TCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAA 127 (325)
Q Consensus 68 ~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~ 127 (325)
.+|.+.|++++|.+.|.+.. ++. ...|+.+...|...|++++|+..|++..
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~-------~~d--~vs~~~mi~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIP-------EKD--VISWTSIIAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCC-------CCC--eeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44555555555555554421 110 1245556666666666666666666653
No 88
>KOG3617|consensus
Probab=98.55 E-value=1.4e-05 Score=77.89 Aligned_cols=181 Identities=18% Similarity=0.218 Sum_probs=112.6
Q ss_pred CCHHHHHHHHHHHHHHHH------hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-
Q psy10061 54 PDYDSAADDYSKAATCFK------GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQA- 126 (325)
Q Consensus 54 ~~~~~A~~~y~~a~~~y~------~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A- 126 (325)
++.+.|...|..|-+-|. .+|+.++|.. +.++.||. .+...++..|...|++.+|+..|.+|
T Consensus 926 GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~-------iA~esgd~----AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 926 GEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAAR-------IAEESGDK----AACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred cchHHHHHHHHHhhhhhhheeeEeeccCchHHHH-------HHHhcccH----HHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 555555555555544332 3444444333 33333432 24456788888889999998887764
Q ss_pred -----HHHHHHcCCHHHHHHH--------HHHHHHHHhccC--HHHHHHHHHHH------HHHHh------------cCC
Q psy10061 127 -----ATLFLEQGNREAASTV--------LEKGAKSLEELK--SDAALTLYSRA------ADVAH------------GED 173 (325)
Q Consensus 127 -----~~~~~~~g~~~~aa~~--------l~~lg~~~~~~~--~~~A~~~y~~A------l~~~~------------~~~ 173 (325)
+.+.++++..++.++. +...+.+|+..+ .+.|..+|.+| +++.- +.=
T Consensus 995 afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DL 1074 (1416)
T KOG3617|consen 995 AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDL 1074 (1416)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhc
Confidence 5566666655544433 234566677665 67777777654 33321 111
Q ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHcc-----------------cH--HHHHHHHHHHHHH
Q psy10061 174 NYKQAAEYISRAARMCVRVKEFDKAADLI------RQEIGYHQESE-----------------HL--LAIGRLAVALVLV 228 (325)
Q Consensus 174 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~------~~al~~~~~~~-----------------~~--~~~~~~~~~lg~~ 228 (325)
+...-...+++.+..+....+|++|+.++ ++|+.++..-+ .+ ...-+.+..++.+
T Consensus 1075 d~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~ 1154 (1416)
T KOG3617|consen 1075 DAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAEL 1154 (1416)
T ss_pred CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHH
Confidence 22222468899999999999999998764 55666653211 11 2345678899999
Q ss_pred HHhcCCHHHHHHHHHhh
Q psy10061 229 QLARGDTVAAEKAFKEW 245 (325)
Q Consensus 229 ~~~~gd~~~A~~~~~~~ 245 (325)
++.+|+|-.|-+-|-++
T Consensus 1155 c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1155 CLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHhccchHHHHHHHhhh
Confidence 99999999998888874
No 89
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.54 E-value=3.3e-05 Score=65.57 Aligned_cols=168 Identities=15% Similarity=0.091 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHH
Q psy10061 101 KHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAA 179 (325)
Q Consensus 101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~ 179 (325)
..+...|..+...|++.+|+..+++....+....- +..+...+|..+...+ +++|+..+++-+..++.... ..
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~---a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~---~~ 79 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY---APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK---AD 79 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT---HH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc---hh
Confidence 44455555555566666666666666555444332 2234455566655554 66666666666666655432 23
Q ss_pred HHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHccc-----------HHHHHHHHHHHHHHHHhcCCHHH
Q psy10061 180 EYISRAARMCVRV-----------KEFDKAADLIRQEIGYHQESEH-----------LLAIGRLAVALVLVQLARGDTVA 237 (325)
Q Consensus 180 ~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~lg~~~~~~gd~~~ 237 (325)
.++..+|.++..+ +...+|+..|+..+..++.... ....+.--+.+|..|+..|.+..
T Consensus 80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~a 159 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKA 159 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHH
T ss_pred hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 4444555544332 2334677777776666654321 11223334568888999999999
Q ss_pred HHHHHHhh-cccCCChHH-HHHHHHHHHH-hcCCHHHHHH
Q psy10061 238 AEKAFKEW-GNCCEAPEV-QTLEKLLQAF-DEEDPEGARQ 274 (325)
Q Consensus 238 A~~~~~~~-~~~~~~~e~-~~l~~L~~a~-~~gd~~~~~~ 274 (325)
|...++.. ..|.++... .++..|++++ ..|..+.+..
T Consensus 160 A~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 160 AIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 99999997 777766644 5777888887 5777775443
No 90
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.54 E-value=1.4e-06 Score=73.60 Aligned_cols=122 Identities=12% Similarity=0.044 Sum_probs=96.0
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-h
Q psy10061 73 AKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSL-E 151 (325)
Q Consensus 73 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~-~ 151 (325)
.++.++++..+.+++...... ...+..+|.+|...|++++|+.+|++|+.+.-.. ...+..+|.++ .
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~------~~~~~~lA~aL~~ 119 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN------SEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN------AELYAALATVLYY 119 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 455677777777766555332 4578999999999999999999999998775332 33677888864 4
Q ss_pred ccC---HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 152 ELK---SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES 212 (325)
Q Consensus 152 ~~~---~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 212 (325)
..+ +++|...+++++.+.... ..++..+|..+.+.|+|++|+.++++++++.+..
T Consensus 120 ~~g~~~~~~A~~~l~~al~~dP~~------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 120 QAGQHMTPQTREMIDKALALDANE------VTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 443 599999999999876553 3588899999999999999999999999986553
No 91
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.53 E-value=2.1e-05 Score=68.66 Aligned_cols=170 Identities=8% Similarity=-0.047 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHH
Q psy10061 102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAE 180 (325)
Q Consensus 102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~ 180 (325)
.+...|..+...|++++|+..|++.+..+... .-+..+...+|.+|...+ +++|+..+++.+..++...+ ...
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s---~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~---~~~ 107 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFG---PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---IDY 107 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc---hHH
Confidence 34455666677799999999999998876643 445556788999998887 99999999999999987754 346
Q ss_pred HHHHHHHHHHHcC------------------CHHHHHHHHHHHHHHHHHccc-----------HHHHHHHHHHHHHHHHh
Q psy10061 181 YISRAARMCVRVK------------------EFDKAADLIRQEIGYHQESEH-----------LLAIGRLAVALVLVQLA 231 (325)
Q Consensus 181 ~~~~lg~~~~~~g------------------~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~lg~~~~~ 231 (325)
++..+|.++...+ ...+|+..|++.+..++...- ....+.--+.+|.-|+.
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~ 187 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK 187 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777887754443 134688889998888765321 12233344578999999
Q ss_pred cCCHHHHHHHHHhh-cccCCChH-HHHHHHHHHHH-hcCCHHHHHHHhc
Q psy10061 232 RGDTVAAEKAFKEW-GNCCEAPE-VQTLEKLLQAF-DEEDPEGARQALN 277 (325)
Q Consensus 232 ~gd~~~A~~~~~~~-~~~~~~~e-~~~l~~L~~a~-~~gd~~~~~~~~~ 277 (325)
.|.+..|..-++.. ..|.++.. .++|..|.+++ ..|.++.+.+.++
T Consensus 188 ~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 188 RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 99999999999998 67765543 36788899998 6999999988654
No 92
>PLN03077 Protein ECB2; Provisional
Probab=98.51 E-value=2.9e-05 Score=80.18 Aligned_cols=224 Identities=11% Similarity=0.055 Sum_probs=131.8
Q ss_pred hhhhhHHHHHHhhchhc-----c------ccccccHHHHHHHHHHHHhhhcc-------cc---cCCCCCHHHHHHHHHH
Q psy10061 7 KEEGMEYVKSAEKHSLS-----T------MTSDRKKEEGMEYVKSAEKHLKT-------SL---LKWKPDYDSAADDYSK 65 (325)
Q Consensus 7 ~~~~~~~~~~ae~~~~~-----~------~~~~~~~~eA~~l~~~A~~~~~~-------~~---~~~~~~~~~A~~~y~~ 65 (325)
+.+|.+++.++++..-. | +...+++++|.+++..+.+.--. .+ ..-.+++++|.+.|.+
T Consensus 370 ~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~ 449 (857)
T PLN03077 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN 449 (857)
T ss_pred HHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 56667777766543210 0 11235677777777766543110 00 0114778888887765
Q ss_pred H-----------HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH--------
Q psy10061 66 A-----------ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQA-------- 126 (325)
Q Consensus 66 a-----------~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A-------- 126 (325)
. ...|...|++++|...|.++..- .. + -...|..+...+.+.|+.+.+.+.+..+
T Consensus 450 m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~---~~-p--d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~ 523 (857)
T PLN03077 450 IPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT---LK-P--NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD 523 (857)
T ss_pred CCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC---CC-C--CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc
Confidence 4 56788899999999999988631 11 1 1223334444444444444444443322
Q ss_pred -------HHHHHHcCCHHHHHH----------HHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy10061 127 -------ATLFLEQGNREAAST----------VLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARM 188 (325)
Q Consensus 127 -------~~~~~~~g~~~~aa~----------~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~ 188 (325)
++.|.+.|+...+.. +|+.+...|-..+ .++|++.|++..+. |.... ..++..+-..
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~----g~~Pd-~~T~~~ll~a 598 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVES----GVNPD-EVTFISLLCA 598 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-cccHHHHHHH
Confidence 223334444333322 4666666676666 88888888876532 21111 1356667777
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 189 CVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 189 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
+.+.|++++|..+|++....+.- .+. ...|..++.++...|++++|.+.+++.
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi--~P~--~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSI--TPN--LKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCC--CCc--hHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 88888999998888877643211 111 135677888888999999999888886
No 93
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.49 E-value=7.8e-05 Score=63.26 Aligned_cols=165 Identities=13% Similarity=0.033 Sum_probs=112.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10061 66 AATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEK 145 (325)
Q Consensus 66 a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~ 145 (325)
.|..+...|+|.+|+..|.+....+... ..+..+...+|.+|...|++++|+..+++-+..+-...... .++..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s---~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~---~A~Y~ 84 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNS---PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD---YALYM 84 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTS---TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH---HHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCC---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh---hHHHH
Confidence 3444556777777777777776666543 24456778889999999999999999999888777665443 34555
Q ss_pred HHHHHhcc-----------C-HHHHHHHHHHHHHHHhcCCChhhH-----------HHHHHHHHHHHHHcCCHHHHHHHH
Q psy10061 146 GAKSLEEL-----------K-SDAALTLYSRAADVAHGEDNYKQA-----------AEYISRAARMCVRVKEFDKAADLI 202 (325)
Q Consensus 146 lg~~~~~~-----------~-~~~A~~~y~~Al~~~~~~~~~~~~-----------~~~~~~lg~~~~~~g~~~~A~~~~ 202 (325)
+|..+... . ..+|+..++..+..++...-...+ +.--..+|..|.+.|.|..|+..+
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~ 164 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRF 164 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 55553221 1 678999999999988876533222 223346788999999999999999
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy10061 203 RQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAE 239 (325)
Q Consensus 203 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~ 239 (325)
+.+++-++.+. ....++..++.+|...|....|.
T Consensus 165 ~~v~~~yp~t~---~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 165 QYVIENYPDTP---AAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHSTTSH---HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHCCCCc---hHHHHHHHHHHHHHHhCChHHHH
Confidence 99998876653 23457788999999999988554
No 94
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.46 E-value=2.4e-05 Score=73.76 Aligned_cols=134 Identities=10% Similarity=0.007 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChhhHH
Q psy10061 100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAA 179 (325)
Q Consensus 100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~ 179 (325)
...+...+..+...|++++|...++++++..-...... -..+..++. +...+.+.+++..++++...+.. .. .
T Consensus 263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~--~~~l~~~~~-l~~~~~~~~~~~~e~~lk~~p~~---~~-~ 335 (409)
T TIGR00540 263 IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS--LPLCLPIPR-LKPEDNEKLEKLIEKQAKNVDDK---PK-C 335 (409)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch--hHHHHHhhh-cCCCChHHHHHHHHHHHHhCCCC---hh-H
Confidence 34555556677777888888888887776433221110 011222221 22234788888888887654433 11 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..+..+|.++.+.|+|++|.++|+++..+... +... .+..+|.++...|+.++|.+++++.
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~---p~~~--~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQ---LDAN--DLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC---CCHH--HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 57789999999999999999999954332211 1122 2346899999999999999999985
No 95
>KOG1125|consensus
Probab=98.44 E-value=1.5e-06 Score=81.47 Aligned_cols=101 Identities=11% Similarity=0.156 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061 100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA 178 (325)
Q Consensus 100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~ 178 (325)
..+...+|.+|.-.|+|++|++||+.|+..--.. ...++++|-++...+ .++|+..|++|+++.+.-
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y------ 497 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPND------YLLWNRLGATLANGNRSEEAISAYNRALQLQPGY------ 497 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCch------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe------
Confidence 4678889999999999999999999998653222 337999999999887 999999999999987642
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQES 212 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 212 (325)
..+..++|..++.+|-|.+|+++|-.||.+.+..
T Consensus 498 VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 498 VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence 3467799999999999999999999999987763
No 96
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.42 E-value=1.6e-05 Score=68.10 Aligned_cols=156 Identities=17% Similarity=0.095 Sum_probs=115.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHH
Q psy10061 104 EQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYI 182 (325)
Q Consensus 104 ~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~ 182 (325)
.+....+.-.|+-+.+..+..+++..+.+... .+.-.|......+ +.+|+..++++..+.+.+ .+.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~------ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d------~~~~ 137 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRE------LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD------WEAW 137 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHH------HHHHHHHHHHHhcchHHHHHHHHHHhccCCCC------hhhh
Confidence 55566666667777777666665544333221 2333666666665 999999999998876554 3688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHHH
Q psy10061 183 SRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQ 262 (325)
Q Consensus 183 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~ 262 (325)
+-+|.+|-+.|+.++|..-|.++++++.. ...+.+|+|..++-.||+..|..++.+...- ......+..+|..
T Consensus 138 ~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~------~p~~~nNlgms~~L~gd~~~A~~lll~a~l~-~~ad~~v~~NLAl 210 (257)
T COG5010 138 NLLGAALDQLGRFDEARRAYRQALELAPN------EPSIANNLGMSLLLRGDLEDAETLLLPAYLS-PAADSRVRQNLAL 210 (257)
T ss_pred hHHHHHHHHccChhHHHHHHHHHHHhccC------CchhhhhHHHHHHHcCCHHHHHHHHHHHHhC-CCCchHHHHHHHH
Confidence 89999999999999999999999998643 2246689999999999999999999997111 1223457778888
Q ss_pred HH-hcCCHHHHHHHhcC
Q psy10061 263 AF-DEEDPEGARQALND 278 (325)
Q Consensus 263 a~-~~gd~~~~~~~~~~ 278 (325)
+. ..||++.+++...+
T Consensus 211 ~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 211 VVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHhhcCChHHHHhhccc
Confidence 87 49999999998776
No 97
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.39 E-value=5.7e-06 Score=63.19 Aligned_cols=104 Identities=10% Similarity=0.002 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHH
Q psy10061 101 KHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAA 179 (325)
Q Consensus 101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~ 179 (325)
..+...|..+...|++++|+..+++++.... +......++..+|.++...+ +++|+.+|++++..+.... ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~ 76 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYP---KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP---KAP 76 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC---ccc
Confidence 4567778888888888888888888775432 22223455677888877776 8888888888877654322 123
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 210 (325)
.++..+|.++..+|++++|+.++++++...+
T Consensus 77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 77 DALLKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 4667788888888888888888888777654
No 98
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.38 E-value=1.5e-06 Score=62.35 Aligned_cols=95 Identities=13% Similarity=0.126 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHH
Q psy10061 102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAE 180 (325)
Q Consensus 102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~ 180 (325)
++.++|.++...|++++|+.++++++....... .++..+|.++...+ +++|+.++++++.+..... .
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~ 69 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA------DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------K 69 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch------h
Confidence 456677777777888888887777766532221 45667777777665 7788888877776544322 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 181 YISRAARMCVRVKEFDKAADLIRQEIGY 208 (325)
Q Consensus 181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 208 (325)
++..+|.++...|++++|..++.+++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 70 AYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 6667777888888888888777776653
No 99
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.38 E-value=1.4e-05 Score=63.98 Aligned_cols=102 Identities=13% Similarity=0.047 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCCh
Q psy10061 97 YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY 175 (325)
Q Consensus 97 ~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~ 175 (325)
...-.....+|..+...|++++|...|+..+.+- ..-...+.++|.+++..+ +.+|+.+|.+|+.+-.. +
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d--d- 102 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID--A- 102 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--C-
Confidence 3444555666777777799999999998877652 223457889999999887 99999999999887643 2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 176 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 176 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 210 (325)
...+.++|.++...|+.+.|.+.|+.++..+.
T Consensus 103 ---p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 103 ---PQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred ---chHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 25778899999999999999999999998874
No 100
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.36 E-value=2.3e-05 Score=79.41 Aligned_cols=182 Identities=8% Similarity=-0.049 Sum_probs=121.8
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI 107 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~ 107 (325)
.|++.+|++.|.++.+.... ...++. ..+.++...|++++|+.++++++ ... ......+..+|
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~--------~~~av~---dll~l~~~~G~~~~A~~~~eka~--~p~----n~~~~~llalA 109 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPL--------QSGQVD---DWLQIAGWAGRDQEVIDVYERYQ--SSM----NISSRGLASAA 109 (822)
T ss_pred CCCHHHHHHHHHHHHhhCcc--------chhhHH---HHHHHHHHcCCcHHHHHHHHHhc--cCC----CCCHHHHHHHH
Confidence 45677777777776554422 221111 44566667799999999999887 111 11234555668
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy10061 108 MMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAA 186 (325)
Q Consensus 108 ~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg 186 (325)
.+|..+|++++|++.|+++++...... .++.-++.++...+ +++|++.++++....... ..+..++
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~n~------~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~-------~~~l~la 176 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPTNP------DLISGMIMTQADAGRGGVVLKQATELAERDPTV-------QNYMTLS 176 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch-------HHHHHHH
Confidence 899999999999999999976644332 23445567777766 999999998887765441 1223456
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 187 RMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 187 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.++..++++.+|+..++++++..+.. ..++..+..+....|-...|.+...+.
T Consensus 177 yL~~~~~~~~~AL~~~ekll~~~P~n------~e~~~~~~~~l~~~~~~~~a~~l~~~~ 229 (822)
T PRK14574 177 YLNRATDRNYDALQASSEAVRLAPTS------EEVLKNHLEILQRNRIVEPALRLAKEN 229 (822)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 66666788877999999998874332 134455667777778888888887776
No 101
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.36 E-value=2.6e-05 Score=79.08 Aligned_cols=190 Identities=13% Similarity=0.024 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10061 61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAAS 140 (325)
Q Consensus 61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa 140 (325)
..|.+ +.+....|+++.|++.|.++++...... ..++ .++.++...|++++|+.++++++ -..... .
T Consensus 36 ~~y~~-aii~~r~Gd~~~Al~~L~qaL~~~P~~~-----~av~-dll~l~~~~G~~~~A~~~~eka~--~p~n~~----~ 102 (822)
T PRK14574 36 TQYDS-LIIRARAGDTAPVLDYLQEESKAGPLQS-----GQVD-DWLQIAGWAGRDQEVIDVYERYQ--SSMNIS----S 102 (822)
T ss_pred HHHHH-HHHHHhCCCHHHHHHHHHHHHhhCccch-----hhHH-HHHHHHHHcCCcHHHHHHHHHhc--cCCCCC----H
Confidence 45555 4555688999999999999987765421 1122 77788888899999999999998 111222 2
Q ss_pred HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHH
Q psy10061 141 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIG 219 (325)
Q Consensus 141 ~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 219 (325)
..+.-+|.++...+ +++|++.|+++++..... ..++..++.+|...+++++|+..+++++..... .
T Consensus 103 ~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-------~ 169 (822)
T PRK14574 103 RGLASAARAYRNEKRWDQALALWQSSLKKDPTN------PDLISGMIMTQADAGRGGVVLKQATELAERDPT-------V 169 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-------h
Confidence 24455577888876 999999999999877654 245567789999999999999999988775433 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 220 RLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 220 ~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
..+..++.++...++..+|++.+++. ..+.... .++..+..+. ..|-.+.+.+..++
T Consensus 170 ~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~--e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 170 QNYMTLSYLNRATDRNYDALQASSEAVRLAPTSE--EVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 12233455555577787799999998 4444332 3455556665 57777777777765
No 102
>KOG0553|consensus
Probab=98.36 E-value=3.6e-05 Score=67.25 Aligned_cols=96 Identities=21% Similarity=0.222 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHH
Q psy10061 138 AASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLL 216 (325)
Q Consensus 138 ~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 216 (325)
..++.+..=|.-+...+ |.+|+..|.+|+++-... +-.|.+-+.+|.++|.|+.|++-++.+|.+- ...
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n------AVyycNRAAAy~~Lg~~~~AVkDce~Al~iD----p~y 148 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN------AVYYCNRAAAYSKLGEYEDAVKDCESALSID----PHY 148 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc------chHHHHHHHHHHHhcchHHHHHHHHHHHhcC----hHH
Confidence 34455566666665555 999999999999987654 3467899999999999999999999998862 223
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 217 AIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 217 ~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
. ++|.++|.+|+.+|++..|++.|+++
T Consensus 149 s--kay~RLG~A~~~~gk~~~A~~aykKa 175 (304)
T KOG0553|consen 149 S--KAYGRLGLAYLALGKYEEAIEAYKKA 175 (304)
T ss_pred H--HHHHHHHHHHHccCcHHHHHHHHHhh
Confidence 3 57889999999999999999999998
No 103
>PLN02789 farnesyltranstransferase
Probab=98.33 E-value=0.0002 Score=64.94 Aligned_cols=174 Identities=11% Similarity=0.023 Sum_probs=114.9
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy10061 67 ATCFKGAK-SFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDL--TDVENLAKQAATLFLEQGNREAASTVL 143 (325)
Q Consensus 67 ~~~y~~~g-~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~--~eA~~~~~~A~~~~~~~g~~~~aa~~l 143 (325)
+.++..+| ++++++.++.+++....+. ..++...+.++...|+. .+++.++.+++++-. .++ .++
T Consensus 78 ~~iL~~L~~~l~eeL~~~~~~i~~npkn------yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp--kNy----~AW 145 (320)
T PLN02789 78 RLCLEALDADLEEELDFAEDVAEDNPKN------YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA--KNY----HAW 145 (320)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHCCcc------hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc--ccH----HHH
Confidence 45566666 5788999988888765543 22456666666777763 677888888875532 232 368
Q ss_pred HHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHHHHcccH
Q psy10061 144 EKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRV---KEF----DKAADLIRQEIGYHQESEHL 215 (325)
Q Consensus 144 ~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~ 215 (325)
...+.++...+ ++++++++.+++++-... ..++...+.+.... |.+ ++++++..++|.+.+...+
T Consensus 146 ~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N------~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~S- 218 (320)
T PLN02789 146 SHRQWVLRTLGGWEDELEYCHQLLEEDVRN------NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNES- 218 (320)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHCCCc------hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcC-
Confidence 88888888887 999999999999875443 25777788777665 333 4678888888887544322
Q ss_pred HHHHHHHHHHHHHHHh----cCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHh
Q psy10061 216 LAIGRLAVALVLVQLA----RGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAFD 265 (325)
Q Consensus 216 ~~~~~~~~~lg~~~~~----~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~~ 265 (325)
+++.++.++.. .+...+|.+.+.+.... ...-..+|.-|++.+.
T Consensus 219 -----aW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~-~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 219 -----PWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK-DSNHVFALSDLLDLLC 266 (320)
T ss_pred -----HHHHHHHHHhcCCcccccchhHHHHHHHhhcc-cCCcHHHHHHHHHHHH
Confidence 44556666655 34556788877775111 1222346777777764
No 104
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.32 E-value=6.1e-05 Score=76.09 Aligned_cols=228 Identities=16% Similarity=0.103 Sum_probs=139.8
Q ss_pred ccccHHHHHHHHHHHHhhhcccc----------cCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCh
Q psy10061 27 SDRKKEEGMEYVKSAEKHLKTSL----------LKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSA 96 (325)
Q Consensus 27 ~~~~~~eA~~l~~~A~~~~~~~~----------~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~ 96 (325)
..+++++++.++..+.+.....+ ++ .+++.+++.. .++.++....++ .+.+++... +++.
T Consensus 43 ~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q-~~~~~~~~lv--~~l~~~~~~~~~-~~ve~~~~~------i~~~ 112 (906)
T PRK14720 43 SENLTDEAKDICEEHLKEHKKSISALYISGILSLS-RRPLNDSNLL--NLIDSFSQNLKW-AIVEHICDK------ILLY 112 (906)
T ss_pred hcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHh-hcchhhhhhh--hhhhhcccccch-hHHHHHHHH------HHhh
Confidence 34688999999998887776532 11 2344444444 555555555555 344443332 2222
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChh
Q psy10061 97 YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYK 176 (325)
Q Consensus 97 ~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~ 176 (325)
...-.++..+|.||.++|++++|...|++++++- ..-+.+++++|-.|...+.++|++++.+|+..+-....+.
T Consensus 113 ~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D------~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i~~kq~~ 186 (906)
T PRK14720 113 GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD------RDNPEIVKKLATSYEEEDKEKAITYLKKAIYRFIKKKQYV 186 (906)
T ss_pred hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcch
Confidence 2333488899999999999999999999998774 3335589999999987799999999999998876555554
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHH
Q psy10061 177 QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQ 255 (325)
Q Consensus 177 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~ 255 (325)
...+.+..+-. ...-+++.=+.+.++.+. +++ .......+.-+-.+|...+|+++++..++.. ..... ...
T Consensus 187 ~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~---~~~-~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~--n~~ 258 (906)
T PRK14720 187 GIEEIWSKLVH--YNSDDFDFFLRIERKVLG---HRE-FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK--NNK 258 (906)
T ss_pred HHHHHHHHHHh--cCcccchHHHHHHHHHHh---hhc-cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc--chh
Confidence 44444433322 222233322222222211 111 1222234555667788888888888888887 22221 344
Q ss_pred HHHHHHHHHh--cCCHHHHHHHhcC
Q psy10061 256 TLEKLLQAFD--EEDPEGARQALND 278 (325)
Q Consensus 256 ~l~~L~~a~~--~gd~~~~~~~~~~ 278 (325)
++..|.+.+. -++...+.++++-
T Consensus 259 a~~~l~~~y~~kY~~~~~~ee~l~~ 283 (906)
T PRK14720 259 AREELIRFYKEKYKDHSLLEDYLKM 283 (906)
T ss_pred hHHHHHHHHHHHccCcchHHHHHHH
Confidence 5667777763 5567777777765
No 105
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.31 E-value=2.8e-05 Score=64.16 Aligned_cols=95 Identities=14% Similarity=0.165 Sum_probs=72.5
Q ss_pred CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 134 GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES 212 (325)
Q Consensus 134 g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 212 (325)
......+..+.++|.++...+ +++|+.+|++++.+..... ....++.++|.++...|++++|+.++++++.+.+..
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN---DRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 445566778899999998877 9999999999998765432 234688999999999999999999999999874432
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCHHH
Q psy10061 213 EHLLAIGRLAVALVLVQLARGDTVA 237 (325)
Q Consensus 213 ~~~~~~~~~~~~lg~~~~~~gd~~~ 237 (325)
...+..+|.++...|+...
T Consensus 106 ------~~~~~~lg~~~~~~g~~~~ 124 (172)
T PRK02603 106 ------PSALNNIAVIYHKRGEKAE 124 (172)
T ss_pred ------HHHHHHHHHHHHHcCChHh
Confidence 2344566777776665433
No 106
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.31 E-value=1.4e-05 Score=60.90 Aligned_cols=105 Identities=10% Similarity=-0.022 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHH
Q psy10061 141 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIG 219 (325)
Q Consensus 141 ~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 219 (325)
..+..+|..+...+ +++|+..|.+++...... .....++..+|.++...|++++|+.+|++++...+... ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~ 76 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS---TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP---KAP 76 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC---ccc
Confidence 45677888887776 999999999998765432 22245778899999999999999999999987653221 123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCC
Q psy10061 220 RLAVALVLVQLARGDTVAAEKAFKEW-GNCCEA 251 (325)
Q Consensus 220 ~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~ 251 (325)
.++..+|.++...|++++|..+++++ ..+.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 77 DALLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 46788999999999999999999997 555444
No 107
>KOG1174|consensus
Probab=98.30 E-value=4.1e-05 Score=69.56 Aligned_cols=183 Identities=11% Similarity=0.045 Sum_probs=136.1
Q ss_pred cHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q psy10061 30 KKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMM 109 (325)
Q Consensus 30 ~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~ 109 (325)
++..|+.+-.|+...-.+ -.+.|--=|++....++.++|+-+|+.|..+.. ---.+|..+..+
T Consensus 315 ~~~rAL~~~eK~I~~~~r-----------~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap------~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 315 KFERALNFVEKCIDSEPR-----------NHEALILKGRLLIALERHTQAVIAFRTAQMLAP------YRLEIYRGLFHS 377 (564)
T ss_pred hHHHHHHHHHHHhccCcc-----------cchHHHhccHHHHhccchHHHHHHHHHHHhcch------hhHHHHHHHHHH
Confidence 566666665555443322 122333447788899999999999999876652 123589999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHhcc-C-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy10061 110 CKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGA-KSLEEL-K-SDAALTLYSRAADVAHGEDNYKQAAEYISRAA 186 (325)
Q Consensus 110 y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg-~~~~~~-~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg 186 (325)
|...|++.||.-.-+.++..+... ++++..+| .++... . -++|-.+|++++.+-+ .+ ..+...++
T Consensus 378 YLA~~~~kEA~~~An~~~~~~~~s------A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P---~Y---~~AV~~~A 445 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRLFQNS------ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINP---IY---TPAVNLIA 445 (564)
T ss_pred HHhhchHHHHHHHHHHHHHHhhcc------hhhhhhhcceeeccCchhHHHHHHHHHhhhccCC---cc---HHHHHHHH
Confidence 999999999998888887765443 44677776 444433 3 8999999999987532 22 34567899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccc
Q psy10061 187 RMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNC 248 (325)
Q Consensus 187 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~ 248 (325)
+++..-|++..++.++++.|.++... ..+..+|.+..+.+.+.+|.++|..+-..
T Consensus 446 EL~~~Eg~~~D~i~LLe~~L~~~~D~-------~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 446 ELCQVEGPTKDIIKLLEKHLIIFPDV-------NLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhCccchHHHHHHHHHhhcccc-------HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99999999999999999999876432 35677999999999999999999998333
No 108
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.30 E-value=3e-05 Score=62.07 Aligned_cols=97 Identities=20% Similarity=0.102 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH
Q psy10061 137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL 215 (325)
Q Consensus 137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 215 (325)
......+..+|..+...+ +++|...|+-...+-... ...+.++|.++..+|+|.+|+..|.+++.+.. +++
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~------~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--ddp 103 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS------FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--DAP 103 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCc
Confidence 334445555665555555 999999998877664332 45788999999999999999999999988742 232
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 216 LAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 216 ~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..+.++|.|++..|+.+.|.+.|+.+
T Consensus 104 ----~~~~~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 104 ----QAPWAAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred ----hHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45678999999999999999999997
No 109
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.29 E-value=2.7e-05 Score=61.13 Aligned_cols=99 Identities=15% Similarity=0.036 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061 100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA 178 (325)
Q Consensus 100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~ 178 (325)
...+..+|.++...|++++|..++++++.+... -...+..+|.++...+ +++|+.++++++.+....
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------ 84 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY------NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD------ 84 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------
Confidence 345667777777777777777777776654211 1345667777776665 777777777776654322
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 210 (325)
...+..+|.+|...|++++|+.+|++++.+.+
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 24566677777777777777777777777644
No 110
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.28 E-value=4.6e-06 Score=59.65 Aligned_cols=92 Identities=16% Similarity=0.189 Sum_probs=73.5
Q ss_pred HHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHH
Q psy10061 142 VLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGR 220 (325)
Q Consensus 142 ~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 220 (325)
++.++|.++...+ +++|+..++++++..... ..++..+|.++...+++++|+.+|++++.+.+... .
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~ 69 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN------ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------K 69 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch------h
Confidence 4667788877776 999999999998765432 15778899999999999999999999887643321 4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 221 LAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 221 ~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
++..++.++...|+++.|...+.++
T Consensus 70 ~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 70 AYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6678999999999999999998876
No 111
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.27 E-value=9.9e-06 Score=58.34 Aligned_cols=80 Identities=15% Similarity=0.227 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCC
Q psy10061 155 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD 234 (325)
Q Consensus 155 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd 234 (325)
++.|+.+++++++..... + ....+..+|.+|.++|+|++|+.++++ +.... .. ......+|.|++.+|+
T Consensus 5 y~~Ai~~~~k~~~~~~~~--~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~----~~--~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 5 YENAIKYYEKLLELDPTN--P--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP----SN--PDIHYLLARCLLKLGK 73 (84)
T ss_dssp HHHHHHHHHHHHHHHCGT--H--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH----CH--HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHCCCC--h--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC----CC--HHHHHHHHHHHHHhCC
Confidence 899999999999887652 1 334677799999999999999999988 33221 11 1234456999999999
Q ss_pred HHHHHHHHHhh
Q psy10061 235 TVAAEKAFKEW 245 (325)
Q Consensus 235 ~~~A~~~~~~~ 245 (325)
+++|+++|+++
T Consensus 74 y~eAi~~l~~~ 84 (84)
T PF12895_consen 74 YEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999999864
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.25 E-value=1.8e-05 Score=67.72 Aligned_cols=157 Identities=19% Similarity=0.119 Sum_probs=121.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy10061 64 SKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVL 143 (325)
Q Consensus 64 ~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l 143 (325)
.+....+...|+-+++..+..+++..+.+. ...+...|......|+|.+|+..++++..+-...+ +.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d------~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~------~~~ 137 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKD------RELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW------EAW 137 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCccc------HHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh------hhh
Confidence 556667778888888888777765544332 12333378888899999999999999987644333 468
Q ss_pred HHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHH
Q psy10061 144 EKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLA 222 (325)
Q Consensus 144 ~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 222 (325)
+-+|.+|.+.+ .+.|..-|.+|++++.... .+++|+|..|.-.|++..|..++.++...- ..-..+.
T Consensus 138 ~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p------~~~nNlgms~~L~gd~~~A~~lll~a~l~~------~ad~~v~ 205 (257)
T COG5010 138 NLLGAALDQLGRFDEARRAYRQALELAPNEP------SIANNLGMSLLLRGDLEDAETLLLPAYLSP------AADSRVR 205 (257)
T ss_pred hHHHHHHHHccChhHHHHHHHHHHHhccCCc------hhhhhHHHHHHHcCCHHHHHHHHHHHHhCC------CCchHHH
Confidence 89999999998 9999999999999987653 588999999999999999999998875421 1112345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHh
Q psy10061 223 VALVLVQLARGDTVAAEKAFKE 244 (325)
Q Consensus 223 ~~lg~~~~~~gd~~~A~~~~~~ 244 (325)
.+++.+...+||+..|.+.-.+
T Consensus 206 ~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 206 QNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHhhcCChHHHHhhccc
Confidence 6899999999999999776554
No 113
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.24 E-value=2.5e-05 Score=72.14 Aligned_cols=85 Identities=15% Similarity=0.192 Sum_probs=63.4
Q ss_pred HHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q psy10061 149 SLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLV 228 (325)
Q Consensus 149 ~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 228 (325)
.+...+++.|+.+|.+|+.+.... ..++.++|.+|..+|++++|+..+++++.+.+. ...+++.+|.+
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~------~~~a~~~lg~~ 79 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNN------AELYADRAQANIKLGNFTEAVADANKAIELDPS------LAKAYLRKGTA 79 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------CHHHHHHHHHH
Confidence 333444888888888888765432 357778888888888888888888888876432 12356778888
Q ss_pred HHhcCCHHHHHHHHHhh
Q psy10061 229 QLARGDTVAAEKAFKEW 245 (325)
Q Consensus 229 ~~~~gd~~~A~~~~~~~ 245 (325)
++.+|+++.|+..|+++
T Consensus 80 ~~~lg~~~eA~~~~~~a 96 (356)
T PLN03088 80 CMKLEEYQTAKAALEKG 96 (356)
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 88888888888888887
No 114
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.24 E-value=7.5e-06 Score=56.45 Aligned_cols=63 Identities=8% Similarity=0.145 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q psy10061 140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVK-EFDKAADLIRQEIGY 208 (325)
Q Consensus 140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~ 208 (325)
+..+..+|.++...+ +++|+.+|.+++++... -..++.++|.+|..+| ++.+|+..+++++.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~------~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN------NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 456777777777776 88888888888776322 1357778888888887 688888888887765
No 115
>KOG0553|consensus
Probab=98.23 E-value=1e-05 Score=70.65 Aligned_cols=121 Identities=11% Similarity=0.104 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCCh
Q psy10061 97 YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY 175 (325)
Q Consensus 97 ~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~ 175 (325)
...|..+.+=|+-..+.++|.+|+..|.+|+++-- .=+..|-+-+.+|..++ ++.|++-++.|+.+-.
T Consensus 78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P------~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp----- 146 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDP------TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP----- 146 (304)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC------CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-----
Confidence 34455666667778888999999999999998732 22446677777888888 9999999999998632
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCH
Q psy10061 176 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDT 235 (325)
Q Consensus 176 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~ 235 (325)
.-..+|.++|.+|..+|+|.+|++.|+++|++.+... .+..+|..+-...++.
T Consensus 147 -~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne------~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 147 -HYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE------SYKSNLKIAEQKLNEP 199 (304)
T ss_pred -HHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH------HHHHHHHHHHHHhcCC
Confidence 2357899999999999999999999999999865432 2334455554444433
No 116
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.21 E-value=4.5e-05 Score=59.88 Aligned_cols=94 Identities=22% Similarity=0.152 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHH
Q psy10061 140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI 218 (325)
Q Consensus 140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 218 (325)
...+..+|..+...+ +++|+.++++++.+.... ...+..+|.++..+|++++|+.++++++.+.+. .
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~------~ 84 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN------SRYWLGLAACCQMLKEYEEAIDAYALAAALDPD------D 84 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------C
Confidence 355778888888776 999999999998865432 367889999999999999999999998886422 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 219 GRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 219 ~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
...++.+|.++...|++++|...|+++
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLA 111 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 245678999999999999999999997
No 117
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.21 E-value=3.8e-05 Score=67.62 Aligned_cols=100 Identities=10% Similarity=0.072 Sum_probs=81.1
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q psy10061 152 ELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLA 231 (325)
Q Consensus 152 ~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~ 231 (325)
..+|++|+..|++.+..++... ....++..+|.+|...|+|++|+..|++++..++... ....+++.+|.++..
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~---~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~---~~~dAl~klg~~~~~ 229 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDST---YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP---KAADAMFKVGVIMQD 229 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc---chhHHHHHHHHHHHH
Confidence 3449999999999999887653 3346788999999999999999999999998775432 234577889999999
Q ss_pred cCCHHHHHHHHHhh-cccCCChHHHHH
Q psy10061 232 RGDTVAAEKAFKEW-GNCCEAPEVQTL 257 (325)
Q Consensus 232 ~gd~~~A~~~~~~~-~~~~~~~e~~~l 257 (325)
.|++++|...|++. ..|.++..+...
T Consensus 230 ~g~~~~A~~~~~~vi~~yP~s~~a~~A 256 (263)
T PRK10803 230 KGDTAKAKAVYQQVIKKYPGTDGAKQA 256 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 99999999999998 677666655433
No 118
>KOG4162|consensus
Probab=98.19 E-value=0.00011 Score=71.45 Aligned_cols=124 Identities=13% Similarity=0.018 Sum_probs=65.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHH
Q psy10061 104 EQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYI 182 (325)
Q Consensus 104 ~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~ 182 (325)
..++..+...+..++|..|..+|..++ ...+..|+..|..+...+ ..+|.+.|..|+.+-+.. ..+.
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~~~------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h------v~s~ 721 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASKID------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH------VPSM 721 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcc------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC------cHHH
Confidence 344555555555555555555554443 233445555555555555 666666666666553321 1344
Q ss_pred HHHHHHHHHcCCHHHHHH--HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 183 SRAARMCVRVKEFDKAAD--LIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 183 ~~lg~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..+|.++.+.|+..-|.. ++..++.+-+ ....+|+.+|.++..+||..+|.++|+-+
T Consensus 722 ~Ala~~lle~G~~~la~~~~~L~dalr~dp------~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 722 TALAELLLELGSPRLAEKRSLLSDALRLDP------LNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 556666666665444444 5555554311 11235556666666666666666666654
No 119
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.19 E-value=1.9e-05 Score=72.88 Aligned_cols=96 Identities=18% Similarity=0.178 Sum_probs=78.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHH
Q psy10061 103 LEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEY 181 (325)
Q Consensus 103 ~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~ 181 (325)
+...|......|++++|+.+|++|+.+... + ..++.++|.+|...+ +++|+..+++++.+.... ..+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~--~----~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~------~~a 72 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN--N----AELYADRAQANIKLGNFTEAVADANKAIELDPSL------AKA 72 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------HHH
Confidence 344466667779999999999999875332 2 347889999999887 999999999999986532 457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 182 ISRAARMCVRVKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 182 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 210 (325)
+..+|.+|..+|+|++|+..|++++.+..
T Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 73 YLRKGTACMKLEEYQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 88999999999999999999999998754
No 120
>KOG0550|consensus
Probab=98.18 E-value=0.00016 Score=65.75 Aligned_cols=128 Identities=13% Similarity=0.132 Sum_probs=86.3
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHH---------HHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYS---------KAATCFKGAKSFQQCKEYLLKAANCYETNKSAYH 98 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~---------~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 98 (325)
.++.+.|+.+|++++++- ++...+...+. .=|+-..+.|+|.+|.++|..++.+-.. +...
T Consensus 216 ~~~~~ka~~hf~qal~ld--------pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~--n~~~ 285 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRLD--------PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS--NKKT 285 (486)
T ss_pred ccchHHHHHHHhhhhccC--------hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc--ccch
Confidence 345667777777765543 33333333333 3356666778888888888888777655 3445
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc
Q psy10061 99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHG 171 (325)
Q Consensus 99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~ 171 (325)
.+.+|.|.+.+..++|+..+|+.-.+.|+.| -......|..-|.++...+ +++|++.|++|++.-..
T Consensus 286 naklY~nra~v~~rLgrl~eaisdc~~Al~i------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 286 NAKLYGNRALVNIRLGRLREAISDCNEALKI------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hHHHHHHhHhhhcccCCchhhhhhhhhhhhc------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 6778888888888888888888888877766 3444566777777777776 88888888888765443
No 121
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.16 E-value=3e-05 Score=55.80 Aligned_cols=82 Identities=12% Similarity=0.126 Sum_probs=59.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH
Q psy10061 113 LNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVR 191 (325)
Q Consensus 113 ~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~ 191 (325)
+|++++|+.+++++++.... ++ -...+..+|.+|...+ +++|+..+++ +.+-.. ...+...+|.++.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~--~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~------~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT--NP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS------NPDIHYLLARCLLK 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG--TH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC------HHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC--Ch--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC------CHHHHHHHHHHHHH
Confidence 57899999999998877554 22 2335666899998888 9999999888 333221 13455567999999
Q ss_pred cCCHHHHHHHHHHH
Q psy10061 192 VKEFDKAADLIRQE 205 (325)
Q Consensus 192 ~g~~~~A~~~~~~a 205 (325)
+|+|++|+++|+++
T Consensus 71 l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGKYEEAIKALEKA 84 (84)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcC
Confidence 99999999998874
No 122
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.15 E-value=1.2e-05 Score=55.39 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q psy10061 60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELN-DLTDVENLAKQAATL 129 (325)
Q Consensus 60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g-~~~eA~~~~~~A~~~ 129 (325)
+..|...|.++...|++++|+.+|.+++++... -+.++.++|.+|..+| ++.+|+.++++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~------~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN------NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 467788899999999999999999999987532 2558999999999999 799999999999875
No 123
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.14 E-value=8.9e-05 Score=57.11 Aligned_cols=101 Identities=16% Similarity=0.081 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHH
Q psy10061 101 KHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAA 179 (325)
Q Consensus 101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~ 179 (325)
.+..+.+.++-.+|+.++|+.+|++++..- . +......++..+|..+...| +++|+..+++++.-+...... .
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g--L-~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~---~ 75 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAG--L-SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELN---A 75 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc---H
Confidence 356778889999999999999999998631 1 23344568889999999998 999999999998766543221 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQEIG 207 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~ 207 (325)
.....++.++...|++++|++.+-.++.
T Consensus 76 ~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 76 ALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2334578899999999999999877764
No 124
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.11 E-value=4.2e-05 Score=67.34 Aligned_cols=106 Identities=9% Similarity=0.034 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Q psy10061 60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAA 139 (325)
Q Consensus 60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~a 139 (325)
...|..+..++...|+|++|+..|...+..+... ..+..++..+|.+|...|++++|+..|++++..|... ...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s---~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s---~~~ 216 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS---TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS---PKA 216 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---cch
Confidence 4556666666566677777777777776666542 2334566677777777777777777777776655433 233
Q ss_pred HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc
Q psy10061 140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHG 171 (325)
Q Consensus 140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~ 171 (325)
..++.++|.++...+ +++|+..|++.++.++.
T Consensus 217 ~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 217 ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 445666677766555 77777777776666654
No 125
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.10 E-value=0.0041 Score=61.74 Aligned_cols=229 Identities=14% Similarity=0.095 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q psy10061 32 EEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCK 111 (325)
Q Consensus 32 ~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~ 111 (325)
.-|.+++.+|-...... .+ ++-.+-|.++... |+.|++-+.. -.++ .+...+.++.++|.++.
T Consensus 8 ~lAeey~~~A~~~~~~~-----~~-~~~l~~Y~kLI~~---------ai~CL~~~~~-~~~l-~p~~ea~~~l~la~iL~ 70 (608)
T PF10345_consen 8 SLAEEYLEKAHSLATKV-----KS-EEQLKQYYKLIAT---------AIKCLEAVLK-QFKL-SPRQEARVRLRLASILL 70 (608)
T ss_pred HHHHHHHHHhHHHHHhc-----CC-hhhHHHHHHHHHH---------HHHHHHHHhc-cCCC-CHHHHHHHHHHHHHHHH
Confidence 45667777776666541 22 3344445554433 4555554443 1122 56778889999998876
Q ss_pred -HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHH-HHHH
Q psy10061 112 -ELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRA-ARMC 189 (325)
Q Consensus 112 -~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l-g~~~ 189 (325)
...++++|..+.++++.+..+.+-.+---.+-.-++.++...++..|+....++++.++..+..... .++.-+ ..++
T Consensus 71 ~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~a~~~l~~~I~~~~~~~~~~w~-~~frll~~~l~ 149 (608)
T PF10345_consen 71 EETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKAALKNLDKAIEDSETYGHSAWY-YAFRLLKIQLA 149 (608)
T ss_pred HHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCchhHH-HHHHHHHHHHH
Confidence 7789999999999999999886555545556667799999999555999999999999885443322 233333 2333
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----ccc--C---CChHHHHHHHH
Q psy10061 190 VRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW----GNC--C---EAPEVQTLEKL 260 (325)
Q Consensus 190 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~--~---~~~e~~~l~~L 260 (325)
...+++..|++.++.........+++.....+.+.-+.+++..+....+.+.++++ ..+ + ....-.++..+
T Consensus 150 ~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~ll 229 (608)
T PF10345_consen 150 LQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLL 229 (608)
T ss_pred HhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHH
Confidence 33489999999999999988877887776667777788888889888888888875 211 1 12233344444
Q ss_pred HH---HHhcCCHHHHHHHhcC
Q psy10061 261 LQ---AFDEEDPEGARQALND 278 (325)
Q Consensus 261 ~~---a~~~gd~~~~~~~~~~ 278 (325)
.+ .+..|++......++.
T Consensus 230 l~l~~~l~~~~~~~~~~~L~~ 250 (608)
T PF10345_consen 230 LDLCCSLQQGDVKNSKQKLKQ 250 (608)
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 44 4468998888887765
No 126
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.08 E-value=0.0025 Score=61.44 Aligned_cols=227 Identities=13% Similarity=0.077 Sum_probs=132.3
Q ss_pred ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061 27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA 106 (325)
Q Consensus 27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~ 106 (325)
-.|++++|++++.+..+.. -+-...++.-|.++..+|++++|...|...++......+ .|..+
T Consensus 16 e~g~~~~AL~~L~~~~~~I-----------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~------Yy~~L 78 (517)
T PF12569_consen 16 EAGDYEEALEHLEKNEKQI-----------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYD------YYRGL 78 (517)
T ss_pred HCCCHHHHHHHHHhhhhhC-----------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH------HHHHH
Confidence 3578999999998755433 233455667889999999999999999988766553321 22222
Q ss_pred HHHHHHc-----CCHHHHHHHHHHHHHH--------------------------HHHcCCHHHHHHHHHHHHHHHhccC-
Q psy10061 107 IMMCKEL-----NDLTDVENLAKQAATL--------------------------FLEQGNREAASTVLEKGAKSLEELK- 154 (325)
Q Consensus 107 ~~~y~~~-----g~~~eA~~~~~~A~~~--------------------------~~~~g~~~~aa~~l~~lg~~~~~~~- 154 (325)
..+.... .+...-...|++.... |....-..++-..+.++-.+|....
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 79 EEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEK 158 (517)
T ss_pred HHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhH
Confidence 2222110 1223333344433222 2111111112223444555555332
Q ss_pred ---HHHHHHHHHHHHHHHhc--------CCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Q psy10061 155 ---SDAALTLYSRAADVAHG--------EDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAV 223 (325)
Q Consensus 155 ---~~~A~~~y~~Al~~~~~--------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 223 (325)
..+-+.-|...++.... ...+.....++.-++..|-..|++++|+++.+++|+.-+ .....|.
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP------t~~ely~ 232 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP------TLVELYM 232 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC------CcHHHHH
Confidence 11222222222211111 112333456778899999999999999999999998532 2335778
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHHH-HHHHH-HhcCCHHHHHHHhcC
Q psy10061 224 ALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLE-KLLQA-FDEEDPEGARQALND 278 (325)
Q Consensus 224 ~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~-~L~~a-~~~gd~~~~~~~~~~ 278 (325)
.-|.++-..||+.+|.+.++.+...+..+. .++ ..... +..|+.+.+...+..
T Consensus 233 ~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR--yiNsK~aKy~LRa~~~e~A~~~~~~ 287 (517)
T PF12569_consen 233 TKARILKHAGDLKEAAEAMDEARELDLADR--YINSKCAKYLLRAGRIEEAEKTASL 287 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhCChhhH--HHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 899999999999999999999855543322 233 22333 367888888777653
No 127
>KOG1156|consensus
Probab=98.07 E-value=0.00043 Score=66.26 Aligned_cols=194 Identities=10% Similarity=0.123 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Q psy10061 60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAA 139 (325)
Q Consensus 60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~a 139 (325)
...|.++..+| ..++|...+......+.-+.+.| ..+.-.|.....+|+-++|.++.+.++.. ..+ .
T Consensus 8 ~~lF~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHg------eslAmkGL~L~~lg~~~ea~~~vr~glr~--d~~----S 74 (700)
T KOG1156|consen 8 NALFRRALKCY-ETKQYKKGLKLIKQILKKFPEHG------ESLAMKGLTLNCLGKKEEAYELVRLGLRN--DLK----S 74 (700)
T ss_pred HHHHHHHHHHH-HHHHHHhHHHHHHHHHHhCCccc------hhHHhccchhhcccchHHHHHHHHHHhcc--Ccc----c
Confidence 44566666665 45666666666666555333333 34555677777889999998888887752 122 2
Q ss_pred HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHH
Q psy10061 140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI 218 (325)
Q Consensus 140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 218 (325)
-.|++-+|.++.... |++|++||+.|+.+-..+ ..+++.++.+..++++|+.....=.+.+++. ...
T Consensus 75 ~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN------~qilrDlslLQ~QmRd~~~~~~tr~~LLql~------~~~ 142 (700)
T KOG1156|consen 75 HVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDN------LQILRDLSLLQIQMRDYEGYLETRNQLLQLR------PSQ 142 (700)
T ss_pred chhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh------hhh
Confidence 347888998888776 999999999998875433 3688888888888898888777766655542 223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh-ccc---CCChHHH----HHHHHHHHHhcCCHHHHHHHhcC
Q psy10061 219 GRLAVALVLVQLARGDTVAAEKAFKEW-GNC---CEAPEVQ----TLEKLLQAFDEEDPEGARQALND 278 (325)
Q Consensus 219 ~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~---~~~~e~~----~l~~L~~a~~~gd~~~~~~~~~~ 278 (325)
...|...++.+...|++..|.+..+.+ ... .+..... ++.+.....+.|.++.+.+++..
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 346677888888888888888888886 111 1111221 12222223467777777777654
No 128
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.05 E-value=0.00011 Score=56.52 Aligned_cols=98 Identities=20% Similarity=0.180 Sum_probs=74.5
Q ss_pred HHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHH
Q psy10061 142 VLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGR 220 (325)
Q Consensus 142 ~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 220 (325)
+..++|.++...| .++|+.+|+++++.- .. ......++..+|..+..+|++++|+.++++++.-++.-.. ...
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g--L~-~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~---~~~ 76 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAG--LS-GADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDEL---NAA 76 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc---cHH
Confidence 5677888898888 999999999998742 11 2233468889999999999999999999998765432111 112
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 221 LAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 221 ~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
....++.++...|++++|.+.+-..
T Consensus 77 l~~f~Al~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 77 LRVFLALALYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344778999999999999988875
No 129
>KOG0495|consensus
Probab=98.04 E-value=0.00044 Score=66.34 Aligned_cols=212 Identities=16% Similarity=0.179 Sum_probs=123.4
Q ss_pred hhhhhHHHHHHhhchhc---cccc------cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHH
Q psy10061 7 KEEGMEYVKSAEKHSLS---TMTS------DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQ 77 (325)
Q Consensus 7 ~~~~~~~~~~ae~~~~~---~~~~------~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~ 77 (325)
++.++.|+++|...... ||.. -++.++|+.++.++++.+ ++|. .+|...|.++...++.+
T Consensus 634 ~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f~---Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 634 LERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSF--------PDFH---KLWLMLGQIEEQMENIE 702 (913)
T ss_pred HHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------CchH---HHHHHHhHHHHHHHHHH
Confidence 66778888888876653 5533 256777777777777766 3333 46777888888888888
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------HHHHHcCCHHHHHHHH
Q psy10061 78 QCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAA--------------TLFLEQGNREAASTVL 143 (325)
Q Consensus 78 ~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~--------------~~~~~~g~~~~aa~~l 143 (325)
.|.++|.......... .-.+..++.+-.+.|...+|...++++. .+-...|+...+-...
T Consensus 703 ~aR~aY~~G~k~cP~~------ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 703 MAREAYLQGTKKCPNS------IPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHhccccCCCC------chHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 8888887766544432 2234445555555555555555555542 2223344444433332
Q ss_pred HHHHHHHhccC--HHHHHHHHH------HHHHHHhc-CCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q psy10061 144 EKGAKSLEELK--SDAALTLYS------RAADVAHG-EDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH 214 (325)
Q Consensus 144 ~~lg~~~~~~~--~~~A~~~y~------~Al~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 214 (325)
.+.-.=+...+ ..+||.+.- ++++-.++ .+++ .++..+|.++....++++|.++|.+++.+.+..|+
T Consensus 777 akALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dp----hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD 852 (913)
T KOG0495|consen 777 AKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDP----HVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD 852 (913)
T ss_pred HHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch
Confidence 22222222222 333333221 11111111 1222 46778899999999999999999999998877776
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 215 LLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 215 ~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.+.- .-..++..|.-++=.+.|.++
T Consensus 853 ~wa~------fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 853 AWAW------FYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred HHHH------HHHHHHHhCCHHHHHHHHHHH
Confidence 5421 223445566555555666665
No 130
>KOG3617|consensus
Probab=98.02 E-value=0.0012 Score=65.07 Aligned_cols=114 Identities=18% Similarity=0.134 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHcCCHHHHHHHHHH----------HHHHHhccC-HHHHHHHHHH
Q psy10061 100 AKHLEQAIMMCKELNDLTDVENLAKQA----ATLFLEQGNREAASTVLEK----------GAKSLEELK-SDAALTLYSR 164 (325)
Q Consensus 100 a~~~~~~~~~y~~~g~~~eA~~~~~~A----~~~~~~~g~~~~aa~~l~~----------lg~~~~~~~-~~~A~~~y~~ 164 (325)
-..|.+-+.-....++...|+++|+++ .++.+-+.+..++.+.|.+ -|.+++..+ .|.|+.+|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 345666666666668888999999885 4555555555555544433 466777777 9999999988
Q ss_pred HHHHHhcC------CChhhH---------HHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHHHcc
Q psy10061 165 AADVAHGE------DNYKQA---------AEYISRAARMCVRVKEFDKAADLIRQE------IGYHQESE 213 (325)
Q Consensus 165 Al~~~~~~------~~~~~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~~~~~~~ 213 (325)
|-+.|... |+...+ ..+...||..|-..|+..+|+..|.+| |.++.+.+
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd 1007 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND 1007 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 87766431 221111 123457899999999999999998875 44555543
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.02 E-value=0.00069 Score=68.67 Aligned_cols=148 Identities=11% Similarity=0.100 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------
Q psy10061 60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFL-------- 131 (325)
Q Consensus 60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~-------- 131 (325)
.+.+.+++..|...++++++......+++.... ....|.-.|.+|...++++++.-. .++.++.
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~------~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKK------SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc------ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 355668888999999999999988866555432 234555566677777777776555 4444433
Q ss_pred -----HcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061 132 -----EQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQE 205 (325)
Q Consensus 132 -----~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 205 (325)
..|++...-.++..+|.+|..++ +++|...|++++++-.. -+.+++++|..|... +.++|+.++.+|
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~------n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD------NPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 33444444457888999999888 99999999999987632 257999999999999 999999999999
Q ss_pred HHHHHHcccHHHHHHHH
Q psy10061 206 IGYHQESEHLLAIGRLA 222 (325)
Q Consensus 206 l~~~~~~~~~~~~~~~~ 222 (325)
+..+-...++...-..|
T Consensus 176 V~~~i~~kq~~~~~e~W 192 (906)
T PRK14720 176 IYRFIKKKQYVGIEEIW 192 (906)
T ss_pred HHHHHhhhcchHHHHHH
Confidence 98765544444433333
No 132
>KOG1464|consensus
Probab=98.00 E-value=0.0028 Score=54.97 Aligned_cols=241 Identities=12% Similarity=0.098 Sum_probs=134.0
Q ss_pred ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN--KSAYHAAKHLEQA 106 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~~~~ 106 (325)
.+.++|+.-|.+...+-.. +++|. -.+..+...++..+++|++-.+.|.+.+...+.. .++. -.+.+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgE-----KgeWG--FKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNyS--EKsIN~I 111 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGE-----KGEWG--FKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYS--EKSINSI 111 (440)
T ss_pred cCHHHHHHHHHHHHhcccc-----cchhH--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHH
Confidence 5788899989888776532 34443 3456677888889999999999998887665542 1111 1222222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC-C--C---hhhHH
Q psy10061 107 IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE-D--N---YKQAA 179 (325)
Q Consensus 107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~-~--~---~~~~~ 179 (325)
-..-....+.+--.+.|+.-++..+...+..-=-..-.++|.+|...+ |..--+.+++.-...+.. | + -....
T Consensus 112 lDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLL 191 (440)
T KOG1464|consen 112 LDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLL 191 (440)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhh
Confidence 222222233344445566655555544332211223345666666554 433333332222222211 1 1 11222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh--------------
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-------------- 245 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-------------- 245 (325)
++|----.+|..+++-.+--.+|++++.+-..+.++...+...-.-|..++..|++++|..-|-++
T Consensus 192 EiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRtt 271 (440)
T KOG1464|consen 192 EIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTT 271 (440)
T ss_pred hhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhH
Confidence 333333345666666666666667777666666666555555555566666667766665443331
Q ss_pred ------------------------cccCCChHHHHHHHHHHHHhcCCHHHHHHHhcC
Q psy10061 246 ------------------------GNCCEAPEVQTLEKLLQAFDEEDPEGARQALND 278 (325)
Q Consensus 246 ------------------------~~~~~~~e~~~l~~L~~a~~~gd~~~~~~~~~~ 278 (325)
.-|.+..|--++.+|..+|..+|..+|+..++.
T Consensus 272 CLKYLVLANMLmkS~iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 272 CLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVAAYQNNDIIEFERILKS 328 (440)
T ss_pred HHHHHHHHHHHHHcCCCCCcccccCCCCCCHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 011233466678899999999999999998875
No 133
>PLN02789 farnesyltranstransferase
Probab=98.00 E-value=0.00044 Score=62.74 Aligned_cols=166 Identities=10% Similarity=0.060 Sum_probs=112.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Q psy10061 53 KPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELN-DLTDVENLAKQAATLFL 131 (325)
Q Consensus 53 ~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g-~~~eA~~~~~~A~~~~~ 131 (325)
.++|.++.++|..+ +...+.+++|+..+.+++.+.... ..++..-+.++..+| ++++++.++.+++....
T Consensus 33 ~~~~~~a~~~~ra~---l~~~e~serAL~lt~~aI~lnP~~------ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np 103 (320)
T PLN02789 33 TPEFREAMDYFRAV---YASDERSPRALDLTADVIRLNPGN------YTVWHFRRLCLEALDADLEEELDFAEDVAEDNP 103 (320)
T ss_pred CHHHHHHHHHHHHH---HHcCCCCHHHHHHHHHHHHHCchh------HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC
Confidence 45666666655553 456677788888888877665432 235666677777777 57999999999986633
Q ss_pred HcCCHHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 132 EQGNREAASTVLEKGAKSLEELK---SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 208 (325)
Q Consensus 132 ~~g~~~~aa~~l~~lg~~~~~~~---~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 208 (325)
+.- .++...+.++...+ +++++.++.+++++-.+. ..++...+.++...|+|+++++++.++|++
T Consensus 104 kny------qaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 104 KNY------QIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN------YHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred cch------HHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 222 24666676666554 378899999998765443 368899999999999999999999999987
Q ss_pred HHHcccHHHHHHHHHHHHHHHHhc---CCH----HHHHHHHHhh
Q psy10061 209 HQESEHLLAIGRLAVALVLVQLAR---GDT----VAAEKAFKEW 245 (325)
Q Consensus 209 ~~~~~~~~~~~~~~~~lg~~~~~~---gd~----~~A~~~~~~~ 245 (325)
-.... .+++..+.+.... |.+ +.++++..++
T Consensus 172 d~~N~------sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~a 209 (320)
T PLN02789 172 DVRNN------SAWNQRYFVITRSPLLGGLEAMRDSELKYTIDA 209 (320)
T ss_pred CCCch------hHHHHHHHHHHhccccccccccHHHHHHHHHHH
Confidence 43322 2445555555444 333 4566666564
No 134
>KOG4162|consensus
Probab=98.00 E-value=0.00081 Score=65.57 Aligned_cols=166 Identities=13% Similarity=0.033 Sum_probs=108.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061 68 TCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGA 147 (325)
Q Consensus 68 ~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg 147 (325)
..|...|.-..|...+++.........+ ....+.-.-.|+.+.+...++++|-.+++..+.... -.-....+.-+|
T Consensus 365 ls~saag~~s~Av~ll~~~~~~~~~ps~---~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~-~~l~~~~~l~lG 440 (799)
T KOG4162|consen 365 LSYSAAGSDSKAVNLLRESLKKSEQPSD---ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQR-SHLKPRGYLFLG 440 (799)
T ss_pred HHHHHhccchHHHHHHHhhcccccCCCc---chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhh-hhhhhhHHHHHH
Confidence 3344444444444444444333322222 223333344556677889999999999999773322 234455677777
Q ss_pred HHHhcc----C--------HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH
Q psy10061 148 KSLEEL----K--------SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL 215 (325)
Q Consensus 148 ~~~~~~----~--------~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 215 (325)
..|... + ..+++..+++|+++-.. |+ .+...++.-|..+++...|.++.++++++.+.
T Consensus 441 i~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~--dp----~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~---- 510 (799)
T KOG4162|consen 441 IAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT--DP----LVIFYLALQYAEQRQLTSALDYAREALALNRG---- 510 (799)
T ss_pred HHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC--Cc----hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC----
Confidence 777653 1 45666777777654333 22 46778999999999999999999999987332
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-ccc
Q psy10061 216 LAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNC 248 (325)
Q Consensus 216 ~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~ 248 (325)
.....+.-++.|.-..+++..|+.....+ ..|
T Consensus 511 -~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~ 543 (799)
T KOG4162|consen 511 -DSAKAWHLLALVLSAQKRLKEALDVVDAALEEF 543 (799)
T ss_pred -ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence 12346677899999999999999998886 444
No 135
>KOG0543|consensus
Probab=97.99 E-value=0.00014 Score=66.08 Aligned_cols=108 Identities=12% Similarity=0.091 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH--H-------HHHHHHHHHHHHHhccC-HHHHHHHHHHHHH
Q psy10061 98 HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNR--E-------AASTVLEKGAKSLEELK-SDAALTLYSRAAD 167 (325)
Q Consensus 98 ~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~--~-------~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~ 167 (325)
.+|.....-|+.|.+.|+|..|...|++|+..+.-...+ . --..++.|++.++..++ |.+|+.++.++|+
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 344555566778888888888888888888776532111 1 11235667777777776 7777777777776
Q ss_pred HHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 168 VAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 168 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 211 (325)
+-..+ ..++.+-|.++..+|+|+.|+..|++++.+.+.
T Consensus 286 ~~~~N------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 286 LDPNN------VKALYRRGQALLALGEYDLARDDFQKALKLEPS 323 (397)
T ss_pred cCCCc------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence 54332 356777777777777777777777777776443
No 136
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.95 E-value=0.019 Score=57.13 Aligned_cols=235 Identities=14% Similarity=0.072 Sum_probs=152.5
Q ss_pred hhhhHHHHHHhhchhccccccccHHHHHHHHHHHHhhhcccccCCC-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy10061 8 EEGMEYVKSAEKHSLSTMTSDRKKEEGMEYVKSAEKHLKTSLLKWK-PDYDSAADDYSKAATCFKGAKSFQQCKEYLLKA 86 (325)
Q Consensus 8 ~~~~~~~~~ae~~~~~~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~-~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a 86 (325)
+=|++++.+|-...... ...+..++=-++...|.+++...+-.++ +...+|.-.++-+..++....+++.|..++.++
T Consensus 8 ~lAeey~~~A~~~~~~~-~~~~~l~~Y~kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~ 86 (608)
T PF10345_consen 8 SLAEEYLEKAHSLATKV-KSEEQLKQYYKLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKA 86 (608)
T ss_pred HHHHHHHHHhHHHHHhc-CChhhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34667777777766655 2222334444444455555543221233 334455554544455566999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHhc-cCHHHHHHHHHH
Q psy10061 87 ANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKG-AKSLEE-LKSDAALTLYSR 164 (325)
Q Consensus 87 ~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~l-g~~~~~-~~~~~A~~~y~~ 164 (325)
..+.++.+-...--.+..-++.+|.+.+... |....+++++.+...+...- ..++.-+ ...+.. .++..|++.++.
T Consensus 87 ~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w-~~~frll~~~l~~~~~d~~~Al~~L~~ 164 (608)
T PF10345_consen 87 ILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW-YYAFRLLKIQLALQHKDYNAALENLQS 164 (608)
T ss_pred HHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH-HHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 9999874433333445555689999877655 99999999999888654321 1222222 222223 359999999999
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--c----cHHHHHHHHHHHHHHHHhcCCHHHH
Q psy10061 165 AADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES--E----HLLAIGRLAVALVLVQLARGDTVAA 238 (325)
Q Consensus 165 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~----~~~~~~~~~~~lg~~~~~~gd~~~A 238 (325)
...+....+++....-+...-+.++...+..+++++..++++...+.. . .+......+..-..+++..|++..+
T Consensus 165 ~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~ 244 (608)
T PF10345_consen 165 IAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNS 244 (608)
T ss_pred HHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999998778776665666667788888899999999999998777654 1 1112222333344566788998888
Q ss_pred HHHHHhh
Q psy10061 239 EKAFKEW 245 (325)
Q Consensus 239 ~~~~~~~ 245 (325)
...+++.
T Consensus 245 ~~~L~~l 251 (608)
T PF10345_consen 245 KQKLKQL 251 (608)
T ss_pred HHHHHHH
Confidence 8887763
No 137
>KOG0624|consensus
Probab=97.95 E-value=0.0013 Score=58.81 Aligned_cols=192 Identities=10% Similarity=0.062 Sum_probs=126.7
Q ss_pred ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIM 108 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~ 108 (325)
|++..++++..+-++.. -| .+.+|+-=+.||...|....|+.-+..+..+.... ...+..++.
T Consensus 169 GD~~~ai~~i~~llEi~-----~W------da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn------Te~~ykis~ 231 (504)
T KOG0624|consen 169 GDCQNAIEMITHLLEIQ-----PW------DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN------TEGHYKISQ 231 (504)
T ss_pred CchhhHHHHHHHHHhcC-----cc------hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc------hHHHHHHHH
Confidence 35666666665543322 12 23455555788889999999998888877766432 246778888
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChhhHHHH
Q psy10061 109 MCKELNDLTDVENLAKQAATLFLEQ-------GNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEY 181 (325)
Q Consensus 109 ~y~~~g~~~eA~~~~~~A~~~~~~~-------g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~ 181 (325)
++...|+...++.-.++++.+-... ....+....+.++-...+...+.++++.+++.+..-+..- .-....
T Consensus 232 L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~--~ir~~~ 309 (504)
T KOG0624|consen 232 LLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEET--MIRYNG 309 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccc--ceeeee
Confidence 8888899888888877777542211 1122233334444444444447777777777765433321 122345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 182 ISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 182 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
+..+..++..-|++.+|+..+.++|++-+. -..++-..+.+|+...+|+.|+.-|+.+
T Consensus 310 ~r~~c~C~~~d~~~~eAiqqC~evL~~d~~------dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 310 FRVLCTCYREDEQFGEAIQQCKEVLDIDPD------DVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred eheeeecccccCCHHHHHHHHHHHHhcCch------HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 667778888999999999999999886322 2245667788899999999999999997
No 138
>KOG3060|consensus
Probab=97.94 E-value=0.0039 Score=53.52 Aligned_cols=200 Identities=13% Similarity=0.028 Sum_probs=143.0
Q ss_pred hhchhcccccc-ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCh
Q psy10061 18 EKHSLSTMTSD-RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSA 96 (325)
Q Consensus 18 e~~~~~~~~~~-~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~ 96 (325)
+..++.|-.-+ .+.++-.++..+-+...+.+.. + ++--..|++...+....|+.+.|..|+.+.-+-+.. .+
T Consensus 14 ~~~~~~wr~~~~rnseevv~l~~~~~~~~k~~~~--g---~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~--S~ 86 (289)
T KOG3060|consen 14 RDQMRKWREETVRNSEEVVQLGSEVLNYSKSGAL--G---DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG--SK 86 (289)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHHHHhhhccc--C---chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC--Ch
Confidence 33444564332 4678888888888777766421 2 445578899988888999999999998886555532 21
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChh
Q psy10061 97 YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYK 176 (325)
Q Consensus 97 ~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~ 176 (325)
++..--|+.+.-.|++++|+++|+..++ .|+...+..-.+++.+-.....-+||+...+-++.|-.+
T Consensus 87 ----RV~~lkam~lEa~~~~~~A~e~y~~lL~-----ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D---- 153 (289)
T KOG3060|consen 87 ----RVGKLKAMLLEATGNYKEAIEYYESLLE-----DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND---- 153 (289)
T ss_pred ----hHHHHHHHHHHHhhchhhHHHHHHHHhc-----cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc----
Confidence 2333346677788999999999987652 445555555678887766666779999999888888654
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHhh
Q psy10061 177 QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARG---DTVAAEKAFKEW 245 (325)
Q Consensus 177 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g---d~~~A~~~~~~~ 245 (325)
.+++..++++|+..|+|.+|.=++++.+-+.+- ...++..++.+++-+| ++.-|.++|.++
T Consensus 154 --~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~------n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 154 --QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF------NPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred --HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 378999999999999999999999998765321 2235556666666554 467788888887
No 139
>KOG1127|consensus
Probab=97.90 E-value=0.00033 Score=70.00 Aligned_cols=155 Identities=11% Similarity=0.037 Sum_probs=96.7
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------HHHcCCHHH
Q psy10061 73 AKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATL--------------FLEQGNREA 138 (325)
Q Consensus 73 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~--------------~~~~g~~~~ 138 (325)
.++...|..+|.+++++-... |.++.-+|.+|+..-+...|..+|++|.++ |-+..+.+.
T Consensus 471 rK~~~~al~ali~alrld~~~------apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~ 544 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSL------APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEE 544 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccch------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHH
Confidence 345667777777776655433 568888999999888888899999998654 222222222
Q ss_pred HHHH----------------HHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHH
Q psy10061 139 ASTV----------------LEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADL 201 (325)
Q Consensus 139 aa~~----------------l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 201 (325)
+... +...|.+|..-+ ...|+..++.|+...+.. ..++..+|.+|...|+|..|++.
T Consensus 545 a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD------~n~W~gLGeAY~~sGry~~AlKv 618 (1238)
T KOG1127|consen 545 AFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKD------YNLWLGLGEAYPESGRYSHALKV 618 (1238)
T ss_pred HHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchh------HHHHHHHHHHHHhcCceehHHHh
Confidence 2221 112233333222 677777777776554332 35777788888888888888888
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 202 IRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 202 ~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
|.++..+-+. .. ..-+..+.+....|.|..|...++..
T Consensus 619 F~kAs~LrP~-----s~-y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 619 FTKASLLRPL-----SK-YGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred hhhhHhcCcH-----hH-HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 8877664221 11 12234666677778888888888774
No 140
>KOG1127|consensus
Probab=97.87 E-value=0.00064 Score=68.02 Aligned_cols=109 Identities=12% Similarity=-0.072 Sum_probs=75.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHH
Q psy10061 106 AIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISR 184 (325)
Q Consensus 106 ~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~ 184 (325)
.|-.|.+.+++..|+..++.|+.+- ..-.+++.-+|.+|...+ +..|++.+.+|..+-+.. ......
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~d------PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s------~y~~fk 635 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTD------PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS------KYGRFK 635 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCC------chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh------HHHHHH
Confidence 4555556666666666666665431 122347888999999998 999999999998764332 234567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Q psy10061 185 AARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLAR 232 (325)
Q Consensus 185 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~ 232 (325)
.+.+.+..|+|.+|++.+...+..+.. .-.....++.+++..
T Consensus 636 ~A~~ecd~GkYkeald~l~~ii~~~s~------e~~~q~gLaE~~ir~ 677 (1238)
T KOG1127|consen 636 EAVMECDNGKYKEALDALGLIIYAFSL------ERTGQNGLAESVIRD 677 (1238)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH------HHHhhhhHHHHHHHH
Confidence 888889999999999999887765321 112345677777664
No 141
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.86 E-value=0.01 Score=53.99 Aligned_cols=233 Identities=15% Similarity=0.120 Sum_probs=127.4
Q ss_pred ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIM 108 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~ 108 (325)
|+|.+|+.+..++.+.- +.=.-+|-.++.+-...|+++.+-.++.++.+.-. +.. -..+...+.
T Consensus 98 G~~~qAEkl~~rnae~~-----------e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~---~~~--l~v~ltrar 161 (400)
T COG3071 98 GDFQQAEKLLRRNAEHG-----------EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG---DDT--LAVELTRAR 161 (400)
T ss_pred CcHHHHHHHHHHhhhcC-----------cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC---Cch--HHHHHHHHH
Confidence 35555555555543322 33345666677777788888888888777765521 111 112333344
Q ss_pred HHHHcCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH----HHh
Q psy10061 109 MCKELNDLTDVENLAKQA--------------ATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAAD----VAH 170 (325)
Q Consensus 109 ~y~~~g~~~eA~~~~~~A--------------~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~----~~~ 170 (325)
+....|+++.|..-..++ ..+|...|+....-..+-++...-.- +-.++..+=++|.. -..
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l-~~~e~~~le~~a~~glL~q~~ 240 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLL-SDEEAARLEQQAWEGLLQQAR 240 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCC-ChHHHHHHHHHHHHHHHHHHh
Confidence 555556655555544443 33455555544433332222211100 02222222222221 111
Q ss_pred cCCCh--------------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------H---Hc--ccH----------
Q psy10061 171 GEDNY--------------KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH------Q---ES--EHL---------- 215 (325)
Q Consensus 171 ~~~~~--------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~---~~--~~~---------- 215 (325)
..+.. .....+...++.-+.++|++++|.++.++++.-. . .. +++
T Consensus 241 ~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 241 DDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKW 320 (400)
T ss_pred ccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHH
Confidence 11100 1112344566777889999999999988887532 1 10 111
Q ss_pred ----HHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcChh
Q psy10061 216 ----LAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAF-DEEDPEGARQALNDPF 280 (325)
Q Consensus 216 ----~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~~~ 280 (325)
...+..+..+|..|+..+.+.+|.++|+.+-.+..+. ....-++.++ +.|++..+.+..+..+
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~--~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA--SDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh--hhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 0123467889999999999999999999874443332 2344568888 4999999988766533
No 142
>KOG0543|consensus
Probab=97.83 E-value=0.00036 Score=63.54 Aligned_cols=139 Identities=13% Similarity=0.150 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC--Ch-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 59 AADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNK--SA-------YHAAKHLEQAIMMCKELNDLTDVENLAKQAATL 129 (325)
Q Consensus 59 A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~--~~-------~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~ 129 (325)
++.-...-|+.|.+.|+|..|...|.+++.....-. +. .--..++.|++.||.++++|.+|+.+..+++++
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 444555558888899999999999999888776321 11 123468999999999999999999999999866
Q ss_pred HHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHH
Q psy10061 130 FLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFD-KAADLIRQEIG 207 (325)
Q Consensus 130 ~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~ 207 (325)
..++ ..+|.+-|.++...+ |+.|+..|++++++.+.+. .+...|..+-.+..++. ...++|.+++.
T Consensus 287 --~~~N----~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk------a~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 287 --DPNN----VKALYRRGQALLALGEYDLARDDFQKALKLEPSNK------AARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred --CCCc----hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2233 447899999999988 9999999999999987763 23344555544444443 33666666655
Q ss_pred HH
Q psy10061 208 YH 209 (325)
Q Consensus 208 ~~ 209 (325)
..
T Consensus 355 k~ 356 (397)
T KOG0543|consen 355 KL 356 (397)
T ss_pred cc
Confidence 43
No 143
>KOG4555|consensus
Probab=97.80 E-value=0.0011 Score=51.01 Aligned_cols=96 Identities=22% Similarity=0.147 Sum_probs=74.8
Q ss_pred HHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHH
Q psy10061 142 VLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGR 220 (325)
Q Consensus 142 ~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 220 (325)
.+..-|......+ .+.|++.|.+++.+..+. +.+|++-+..+.-+|+.++|++-+.+++++... ......+
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r------aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~--~trtacq 116 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPER------ASAYNNRAQALRLQGDDEEALDDLNKALELAGD--QTRTACQ 116 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccc------hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc--cchHHHH
Confidence 3444455555555 888999999999887654 468889999999999999999999999887532 2344567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 221 LAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 221 ~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
++...|.+|..+|+-+.|..-|+.+
T Consensus 117 a~vQRg~lyRl~g~dd~AR~DFe~A 141 (175)
T KOG4555|consen 117 AFVQRGLLYRLLGNDDAARADFEAA 141 (175)
T ss_pred HHHHHHHHHHHhCchHHHHHhHHHH
Confidence 7888899999999999999999886
No 144
>KOG2300|consensus
Probab=97.75 E-value=0.037 Score=51.78 Aligned_cols=208 Identities=13% Similarity=0.062 Sum_probs=138.9
Q ss_pred ccHHHHHHHHHHHHhhhcccccCCCCC-HHHHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC----hHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSLLKWKPD-YDSAA-----DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKS----AYH 98 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~-~~~A~-----~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~----~~~ 98 (325)
|-|+++.++-.++.+...+.- ..+ ..... ...+....|-...|++.+|++....+.+.+..... ...
T Consensus 289 gy~~~~~K~tDe~i~q~eklk---q~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~ 365 (629)
T KOG2300|consen 289 GYFKKAQKYTDEAIKQTEKLK---QADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAH 365 (629)
T ss_pred HHHHHHHHHHHHHHHHHhhcc---cccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHh
Confidence 457777777777776654420 111 11222 22334456667789999999999998888876643 233
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCC----
Q psy10061 99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDN---- 174 (325)
Q Consensus 99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~---- 174 (325)
.+....-+|.-...-+-++.|...+..|...-. ..+-.+-+-.+++.+|-..+-.+ -+.++++.....+.
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~---~~dl~a~~nlnlAi~YL~~~~~e---d~y~~ld~i~p~nt~s~s 439 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE---SIDLQAFCNLNLAISYLRIGDAE---DLYKALDLIGPLNTNSLS 439 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh---HHHHHHHHHHhHHHHHHHhccHH---HHHHHHHhcCCCCCCcch
Confidence 455555566555566778888888887765533 33445667778888888765222 23355555443322
Q ss_pred -hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 175 -YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 175 -~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
....+.++.-.|...+.++++.+|...+.+.+.+....+.....+-.+.-+|.+.+..||..++.+..+-+
T Consensus 440 sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpa 511 (629)
T KOG2300|consen 440 SQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPA 511 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchH
Confidence 12335567778888899999999999999999987544444445566778999999999999998887764
No 145
>KOG1128|consensus
Probab=97.74 E-value=0.00035 Score=67.70 Aligned_cols=121 Identities=11% Similarity=-0.060 Sum_probs=68.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy10061 108 MMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAA 186 (325)
Q Consensus 108 ~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg 186 (325)
..|.-.||.-.=-.+|++|.++..... +.+...+|...... +|.++..+++.++++..- ...++..+|
T Consensus 458 ~lyc~LGDv~~d~s~yEkawElsn~~s-----arA~r~~~~~~~~~~~fs~~~~hle~sl~~npl------q~~~wf~~G 526 (777)
T KOG1128|consen 458 RLYCLLGDVLHDPSLYEKAWELSNYIS-----ARAQRSLALLILSNKDFSEADKHLERSLEINPL------QLGTWFGLG 526 (777)
T ss_pred hhHHHhhhhccChHHHHHHHHHhhhhh-----HHHHHhhccccccchhHHHHHHHHHHHhhcCcc------chhHHHhcc
Confidence 344444444444456666666654322 11222333333322 377777777777665432 234666777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 187 RMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 187 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.+..+.+++..|++.|.+.+.+. + .....++|+...|+..|+-.+|...+.++
T Consensus 527 ~~ALqlek~q~av~aF~rcvtL~-----P-d~~eaWnNls~ayi~~~~k~ra~~~l~EA 579 (777)
T KOG1128|consen 527 CAALQLEKEQAAVKAFHRCVTLE-----P-DNAEAWNNLSTAYIRLKKKKRAFRKLKEA 579 (777)
T ss_pred HHHHHHhhhHHHHHHHHHHhhcC-----C-CchhhhhhhhHHHHHHhhhHHHHHHHHHH
Confidence 77777777777777776665542 1 12245667777777777777777777765
No 146
>KOG2376|consensus
Probab=97.73 E-value=0.0068 Score=57.74 Aligned_cols=67 Identities=18% Similarity=0.298 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---cc------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQES---EH------LLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~------~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
-+.+.|.+-+++..|+|.+|++.+++++.++++. ++ ......+...++-++..+|+..+|...|..+
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3567789999999999999999999999988763 11 1234455677888888999999999988875
No 147
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.73 E-value=0.00011 Score=49.92 Aligned_cols=56 Identities=14% Similarity=0.065 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 184 RAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 184 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.+|..+...|+|++|+..|++++...+ ....+++.+|.++..+|++++|...|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDP------DNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCST------THHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 578888999999999999988877532 13357788999999999999999998886
No 148
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.72 E-value=0.0013 Score=48.43 Aligned_cols=76 Identities=18% Similarity=0.148 Sum_probs=59.8
Q ss_pred HhccCHHHHHHHHHHHHHHHhcCCChh---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q psy10061 150 LEELKSDAALTLYSRAADVAHGEDNYK---QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVAL 225 (325)
Q Consensus 150 ~~~~~~~~A~~~y~~Al~~~~~~~~~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 225 (325)
+...+|..|++.+.+..+.....+... ....++.+++.++...|++++|+..+++++.+.++.++......++.-+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL 87 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 334458888888888888877765533 4456788899999999999999999999999999999887766554433
No 149
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.72 E-value=0.00013 Score=49.48 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=47.1
Q ss_pred HHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 145 KGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH 209 (325)
Q Consensus 145 ~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 209 (325)
.+|..+...+ +++|+.+|++++.... ....++..+|.++..+|++++|+.+|++++.+.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDP------DNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCST------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4567777776 9999999999886543 245788999999999999999999999998764
No 150
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.71 E-value=0.018 Score=57.58 Aligned_cols=233 Identities=15% Similarity=0.036 Sum_probs=153.6
Q ss_pred cchhhhhhHHHHHHhhchhc------------c-------ccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHH
Q psy10061 4 DRKKEEGMEYVKSAEKHSLS------------T-------MTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYS 64 (325)
Q Consensus 4 ~~~~~~~~~~~~~ae~~~~~------------~-------~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~ 64 (325)
+=-+.++..+|.++++-++- | ....+++++|+++.+.++..+-. .-|-.-+-++.
T Consensus 428 ~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~------~~~~~r~~~~s 501 (894)
T COG2909 428 QHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE------AAYRSRIVALS 501 (894)
T ss_pred ccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc------ccchhhhhhhh
Confidence 34467888999999988873 1 12236789999999998887754 33444566788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--C-CHHHHHH
Q psy10061 65 KAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ--G-NREAAST 141 (325)
Q Consensus 65 ~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~--g-~~~~aa~ 141 (325)
-++.++.-.|++++|..+...+.++.+..+.+.-...+...-+.+...+|+-. ..-..++-...+.. + .+...-.
T Consensus 502 v~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~--~a~~~~~~~~~~~q~l~q~~~~~f~ 579 (894)
T COG2909 502 VLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVA--RAEQEKAFNLIREQHLEQKPRHEFL 579 (894)
T ss_pred hhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHhhhcccchhH
Confidence 88999999999999999999999999999999999999999999999999322 22222222211111 0 1111111
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc-cHHHHH
Q psy10061 142 VLEKGAKSLEELKSDAALTLYSRAADVAHGEDN-YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE-HLLAIG 219 (325)
Q Consensus 142 ~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~ 219 (325)
....+...+....++.+..-....+++-..... ......++..++.++...|++++|.....+...+..+.+ .....+
T Consensus 580 ~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a 659 (894)
T COG2909 580 VRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLA 659 (894)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHH
Confidence 222333333333355555545555544333221 222223345899999999999999999998888776553 334455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHh
Q psy10061 220 RLAVALVLVQLARGDTVAAEKAFKE 244 (325)
Q Consensus 220 ~~~~~lg~~~~~~gd~~~A~~~~~~ 244 (325)
.++..-....+.+||+..|.....+
T Consensus 660 ~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 660 AAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHhhHHHhcccCCHHHHHHHHHh
Confidence 5555455555678999999888887
No 151
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.71 E-value=0.001 Score=49.00 Aligned_cols=81 Identities=14% Similarity=0.124 Sum_probs=66.7
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhcCChH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061 71 KGAKSFQQCKEYLLKAANCYETNKSAY---HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGA 147 (325)
Q Consensus 71 ~~~g~~~~A~~~~~~a~~~~~~~~~~~---~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg 147 (325)
...|+|..|.+.+.+..+.....+... ....+..+++.++...|++++|+..+++|+.+.++.+|....+.++.-+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~ 88 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLA 88 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 356788888888888888877665544 56677888999999999999999999999999999999988888777776
Q ss_pred HHHh
Q psy10061 148 KSLE 151 (325)
Q Consensus 148 ~~~~ 151 (325)
.+..
T Consensus 89 ~l~~ 92 (94)
T PF12862_consen 89 NLLK 92 (94)
T ss_pred HHhh
Confidence 6543
No 152
>KOG3785|consensus
Probab=97.70 E-value=0.0052 Score=55.21 Aligned_cols=107 Identities=15% Similarity=0.119 Sum_probs=70.0
Q ss_pred ccchhhhhhHHHHHHhhchh--ccccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy10061 3 SDRKKEEGMEYVKSAEKHSL--STMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCK 80 (325)
Q Consensus 3 ~~~~~~~~~~~~~~ae~~~~--~~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~ 80 (325)
|.|+.+-+..-+++|.|+-+ -|.+ ..+|+-|+.++.-.... +-++--+.-.=++.|+..+|+|++|+
T Consensus 9 ~~R~~~g~~~~~kkarK~P~Ledfls-~rDytGAislLefk~~~----------~~EEE~~~~lWia~C~fhLgdY~~Al 77 (557)
T KOG3785|consen 9 SSRKRNGAGPTIKKARKMPELEDFLS-NRDYTGAISLLEFKLNL----------DREEEDSLQLWIAHCYFHLGDYEEAL 77 (557)
T ss_pred ccccccCCCCcchhhhcCchHHHHHh-cccchhHHHHHHHhhcc----------chhhhHHHHHHHHHHHHhhccHHHHH
Confidence 44666666666888888766 2433 34799999988754321 11222333345789999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061 81 EYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQA 126 (325)
Q Consensus 81 ~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A 126 (325)
..|..+.. -.+.. +....+++-++.-+|.|.+|...-.+|
T Consensus 78 ~~Y~~~~~----~~~~~--~el~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 78 NVYTFLMN----KDDAP--AELGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHhc----cCCCC--cccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 99887654 11222 345667788888888887777665554
No 153
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.65 E-value=0.0022 Score=59.68 Aligned_cols=123 Identities=13% Similarity=0.073 Sum_probs=93.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHH
Q psy10061 106 AIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISR 184 (325)
Q Consensus 106 ~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~ 184 (325)
+..++...+++++|+..+++.... +++ +...++.++...+ ..+|++.+.+++...+.. ...+.-
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~-----~pe----v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d------~~LL~~ 239 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER-----DPE----VAVLLARVYLLMNEEVEAIRLLNEALKENPQD------SELLNL 239 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc-----CCc----HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC------HHHHHH
Confidence 344555667888888887775422 222 3345777777666 889999999999554432 578888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccC
Q psy10061 185 AARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCC 249 (325)
Q Consensus 185 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~ 249 (325)
.+..+...++|+.|+.+.++++.+.+. .-..|..++.+|...||++.|+-.++.+|.+.
T Consensus 240 Qa~fLl~k~~~~lAL~iAk~av~lsP~------~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 240 QAEFLLSKKKYELALEIAKKAVELSPS------EFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCch------hHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999999999999999987543 22467789999999999999999999876553
No 154
>KOG3616|consensus
Probab=97.63 E-value=0.0019 Score=62.84 Aligned_cols=65 Identities=20% Similarity=0.188 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHH
Q psy10061 100 AKHLEQAIMMCKELNDLTDVENLAKQ------AATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRA 165 (325)
Q Consensus 100 a~~~~~~~~~y~~~g~~~eA~~~~~~------A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~A 165 (325)
...|..+|.+|.+..++++|++||++ |+++.+ ..-+......-..-|.-++..+ ++.|+.+|-+|
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielar-fafp~evv~lee~wg~hl~~~~q~daainhfiea 732 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELAR-FAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA 732 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHH-hhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence 45677777777777777777777765 333322 2233344444444455555444 66666655443
No 155
>KOG4555|consensus
Probab=97.63 E-value=0.0018 Score=49.96 Aligned_cols=100 Identities=19% Similarity=0.168 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHH
Q psy10061 101 KHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAA 179 (325)
Q Consensus 101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~ 179 (325)
..++.-|....+.|+.+.|++.|.+++.+.-+. +.+|++-+..+.-.+ .++|+.-+.+|+++.... .+.+.
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r------aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trtac 115 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLAPER------ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRTAC 115 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcccc------hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chHHH
Confidence 344445566667788888888888888875433 346888888887766 888888888888876543 45567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQEIGY 208 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 208 (325)
.++..-|.+|..+|+-+.|..-|+.+..+
T Consensus 116 qa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 116 QAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 78899999999999999999999887664
No 156
>KOG3060|consensus
Probab=97.62 E-value=0.029 Score=48.31 Aligned_cols=126 Identities=9% Similarity=0.059 Sum_probs=91.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061 67 ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKG 146 (325)
Q Consensus 67 ~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~l 146 (325)
|..+...|++++|.++|...++ +|+...+.--..++ +...+|+.-+|++....-++.|. +|. .++..+
T Consensus 93 am~lEa~~~~~~A~e~y~~lL~-----ddpt~~v~~KRKlA-ilka~GK~l~aIk~ln~YL~~F~--~D~----EAW~eL 160 (289)
T KOG3060|consen 93 AMLLEATGNYKEAIEYYESLLE-----DDPTDTVIRKRKLA-ILKAQGKNLEAIKELNEYLDKFM--NDQ----EAWHEL 160 (289)
T ss_pred HHHHHHhhchhhHHHHHHHHhc-----cCcchhHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHhc--CcH----HHHHHH
Confidence 4566778888999988877542 33444443334444 44667888888888777776654 343 379999
Q ss_pred HHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHH
Q psy10061 147 AKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVK---EFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 147 g~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~ 210 (325)
+.+|...+ |.+|.-||++.+-+-+-. ..++..+|.+++-+| ++.-|.++|.+++.+..
T Consensus 161 aeiY~~~~~f~kA~fClEE~ll~~P~n------~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 161 AEIYLSEGDFEKAAFCLEELLLIQPFN------PLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 99999888 999999999998664432 246778888877665 77789999999999865
No 157
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.59 E-value=0.00021 Score=42.41 Aligned_cols=33 Identities=15% Similarity=0.363 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q psy10061 181 YISRAARMCVRVKEFDKAADLIRQEIGYHQESE 213 (325)
Q Consensus 181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 213 (325)
++.+||.+|.++|+|++|+++|+++|.+..+.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~ 33 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE 33 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 477899999999999999999999988766543
No 158
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.57 E-value=0.019 Score=47.54 Aligned_cols=126 Identities=17% Similarity=0.151 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHH
Q psy10061 121 NLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAA 199 (325)
Q Consensus 121 ~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 199 (325)
+-++.-++-++...--......+..+|..|...| .+.|+++|.++.+..... ....+.+.++..+.+..+++....
T Consensus 17 ~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~---~~~id~~l~~irv~i~~~d~~~v~ 93 (177)
T PF10602_consen 17 EKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSP---GHKIDMCLNVIRVAIFFGDWSHVE 93 (177)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH---HHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3444445555555555666677888888888777 888888888876654332 334567778888888889999999
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccC
Q psy10061 200 DLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCC 249 (325)
Q Consensus 200 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~ 249 (325)
.+..++-.+....++.....+....-|+.++..++|..|.+.|-+. +.|.
T Consensus 94 ~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 94 KYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 9988888877776665555566667788888899999999999987 5553
No 159
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=97.56 E-value=0.037 Score=48.78 Aligned_cols=121 Identities=12% Similarity=0.010 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------HHHHcccHHHHHHHHHHHH
Q psy10061 158 ALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIG-----------YHQESEHLLAIGRLAVALV 226 (325)
Q Consensus 158 A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----------~~~~~~~~~~~~~~~~~lg 226 (325)
-..+..+|+...+..+...+-.+.+..+|..|.+-|++.+|..+|-..-. .....+.+........+.+
T Consensus 69 r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaV 148 (260)
T PF04190_consen 69 RKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAV 148 (260)
T ss_dssp HHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 44566677777744445556667888899999999999999888743211 1111233334455666778
Q ss_pred HHHHhcCCHHHHHHHHHhh-cc---------------cCCChHHHHHHHHHHHHhcCCHHHHHHHhcC
Q psy10061 227 LVQLARGDTVAAEKAFKEW-GN---------------CCEAPEVQTLEKLLQAFDEEDPEGARQALND 278 (325)
Q Consensus 227 ~~~~~~gd~~~A~~~~~~~-~~---------------~~~~~e~~~l~~L~~a~~~gd~~~~~~~~~~ 278 (325)
..|+..++...|...+..+ .. +....--.++.-|..+++.++.+.|...+++
T Consensus 149 L~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~ 216 (260)
T PF04190_consen 149 LQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEK 216 (260)
T ss_dssp HHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 8899999999999988775 11 2334445677778889988999999998876
No 160
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.55 E-value=0.038 Score=50.37 Aligned_cols=59 Identities=17% Similarity=0.176 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..+..+|.++.+.+.|.+|-++|+.++..-.+. ..+.-++.++..+|+...|.+.+++.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-------~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSA-------SDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-------hhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 578899999999999999999999888753222 34456889999999999999999986
No 161
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.51 E-value=0.0056 Score=50.66 Aligned_cols=127 Identities=11% Similarity=0.049 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhccCHHHH
Q psy10061 80 KEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKS-LEELKSDAA 158 (325)
Q Consensus 80 ~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~-~~~~~~~~A 158 (325)
.+-+..-++-++...-......++..+|..|.+.|+.++|+++|.++.+.....| .....+.++-.+ +...++...
T Consensus 16 ~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~---~~id~~l~~irv~i~~~d~~~v 92 (177)
T PF10602_consen 16 LEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPG---HKIDMCLNVIRVAIFFGDWSHV 92 (177)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH---HHHHHHHHHHHHHHHhCCHHHH
Confidence 3334444444555555677888999999999999999999999999776543333 333333444333 344458888
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 159 LTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH 209 (325)
Q Consensus 159 ~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 209 (325)
..+..+|-.+....++.......-.--|..+...++|.+|...|-.++..+
T Consensus 93 ~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 93 EKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 899999998888877766555555567777888899999999998877655
No 162
>KOG1128|consensus
Probab=97.49 E-value=0.0027 Score=61.71 Aligned_cols=140 Identities=13% Similarity=0.120 Sum_probs=90.8
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH
Q psy10061 112 ELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCV 190 (325)
Q Consensus 112 ~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~ 190 (325)
..++|.++.++++.++++. ......+..+|-+.-+.. +..|..+|..++.+-... .+++++++..|+
T Consensus 497 ~~~~fs~~~~hle~sl~~n------plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~------~eaWnNls~ayi 564 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEIN------PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN------AEAWNNLSTAYI 564 (777)
T ss_pred cchhHHHHHHHHHHHhhcC------ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc------hhhhhhhhHHHH
Confidence 3456666666666665542 222335666666666554 788888888877654432 468888999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHHhcCCH
Q psy10061 191 RVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAFDEEDP 269 (325)
Q Consensus 191 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~~~gd~ 269 (325)
+.|+-.+|...+++++.-.. + ....+.|--.+....|.+++|.+.+.+. ..-....+..++..+....-.+++
T Consensus 565 ~~~~k~ra~~~l~EAlKcn~---~---~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~~~~ 638 (777)
T KOG1128|consen 565 RLKKKKRAFRKLKEALKCNY---Q---HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLEGMT 638 (777)
T ss_pred HHhhhHHHHHHHHHHhhcCC---C---CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHhhcc
Confidence 99999999888888877421 1 1135566777788888899998888886 211122245566666666544444
No 163
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.49 E-value=0.019 Score=47.30 Aligned_cols=123 Identities=19% Similarity=0.223 Sum_probs=57.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy10061 109 MCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAAR 187 (325)
Q Consensus 109 ~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~ 187 (325)
++...|++++|..++.+++.. ..........+...+..+...+ ++.++..+.+++...... ....+..++.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~ 210 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL---DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-----DAEALLNLGL 210 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc---CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-----chHHHHHhhH
Confidence 555556666666666665221 1000111222222233233332 666666666665554432 1234555666
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 188 MCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 188 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.+...+++.+|+..+..++...+. ....+..++.++...+++..+...+.+.
T Consensus 211 ~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 211 LYLKLGKYEEALEYYEKALELDPD------NAEALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred HHHHcccHHHHHHHHHHHHhhCcc------cHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666666666655554322 1112233444444444555555555554
No 164
>KOG0495|consensus
Probab=97.47 E-value=0.01 Score=57.29 Aligned_cols=184 Identities=15% Similarity=0.052 Sum_probs=121.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061 69 CFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAK 148 (325)
Q Consensus 69 ~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~ 148 (325)
-+...|+...|...+.++.+......+ ...-+..+-.+...+++|..++.+|-. ..| -.+++.+-+.
T Consensus 593 e~w~agdv~~ar~il~~af~~~pnsee------iwlaavKle~en~e~eraR~llakar~---~sg----TeRv~mKs~~ 659 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPNSEE------IWLAAVKLEFENDELERARDLLAKARS---ISG----TERVWMKSAN 659 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCCcHH------HHHHHHHHhhccccHHHHHHHHHHHhc---cCC----cchhhHHHhH
Confidence 345667777777777776665544322 334445556666788888888888754 222 2446666666
Q ss_pred HHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q psy10061 149 SLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVL 227 (325)
Q Consensus 149 ~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 227 (325)
+...++ .++|++++++++..|..- -..+..+|.++.++++.+.|.+.|...+..++-. .-.++.++.
T Consensus 660 ~er~ld~~eeA~rllEe~lk~fp~f------~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~------ipLWllLak 727 (913)
T KOG0495|consen 660 LERYLDNVEEALRLLEEALKSFPDF------HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS------IPLWLLLAK 727 (913)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCch------HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC------chHHHHHHH
Confidence 666565 899999999999888654 2578889999999999999999998887765432 124566777
Q ss_pred HHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHHHH-HhcCCHHHHHHHhcC
Q psy10061 228 VQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQA-FDEEDPEGARQALND 278 (325)
Q Consensus 228 ~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a-~~~gd~~~~~~~~~~ 278 (325)
+--..|...+|...|++...-.+-. ..+-...++. +..|..+.++..+.+
T Consensus 728 leEk~~~~~rAR~ildrarlkNPk~-~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKNPKN-ALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcCCCc-chhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7778888888988888871111111 1111122333 467777777777665
No 165
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.47 E-value=0.00039 Score=41.27 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q psy10061 102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGN 135 (325)
Q Consensus 102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~ 135 (325)
++.++|.+|..+|++++|+++|++++.+....++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~ 34 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPED 34 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence 4677888888888888888888888877665543
No 166
>KOG1174|consensus
Probab=97.46 E-value=0.004 Score=56.95 Aligned_cols=152 Identities=9% Similarity=0.045 Sum_probs=116.1
Q ss_pred ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH-
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI- 107 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~- 107 (325)
++.++|.-.|+.|..+. +--.++|+-+..+|...|.+.+|.-.-..+...+... |+++.-+|
T Consensus 348 ~R~~~A~IaFR~Aq~La-----------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s------A~~LtL~g~ 410 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLA-----------PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS------ARSLTLFGT 410 (564)
T ss_pred cchHHHHHHHHHHHhcc-----------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc------hhhhhhhcc
Confidence 67888888888887665 2345789999999999999999988877777666543 45666665
Q ss_pred HHHHHcC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy10061 108 MMCKELN-DLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA 185 (325)
Q Consensus 108 ~~y~~~g-~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l 185 (325)
.++..-. -.++|-.++++++.+ .-++.++ -..++.++...+ +..++..+++++..+... ...+.+
T Consensus 411 ~V~~~dp~~rEKAKkf~ek~L~~---~P~Y~~A---V~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-------~LH~~L 477 (564)
T KOG1174|consen 411 LVLFPDPRMREKAKKFAEKSLKI---NPIYTPA---VNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-------NLHNHL 477 (564)
T ss_pred eeeccCchhHHHHHHHHHhhhcc---CCccHHH---HHHHHHHHHhhCccchHHHHHHHHHhhcccc-------HHHHHH
Confidence 4443322 345788888888754 3445444 456778888777 999999999999888653 467889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 186 ARMCVRVKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 186 g~~~~~~g~~~~A~~~~~~al~~~~ 210 (325)
|.++..++.+++|+++|..+|.+-+
T Consensus 478 gd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 478 GDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 9999999999999999999998743
No 167
>KOG0624|consensus
Probab=97.42 E-value=0.061 Score=48.39 Aligned_cols=158 Identities=14% Similarity=0.024 Sum_probs=106.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061 67 ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKG 146 (325)
Q Consensus 67 ~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~l 146 (325)
+.+|...|...-|+.-+.+.+++-.. -..+..+-|.++.++|.+++|..-+.+.++--...|.... +..++
T Consensus 79 aT~yLAmGksk~al~Dl~rVlelKpD------F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~e---aqskl 149 (504)
T KOG0624|consen 79 ATVYLAMGKSKAALQDLSRVLELKPD------FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLE---AQSKL 149 (504)
T ss_pred HHHHhhhcCCccchhhHHHHHhcCcc------HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHH---HHHHH
Confidence 56677777777777777666544321 2234566788999999999999999988754333332211 22222
Q ss_pred HHH------------HhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q psy10061 147 AKS------------LEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE 213 (325)
Q Consensus 147 g~~------------~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 213 (325)
+.+ +...+ +..++++....+++. .+.+..+..-+.+|+..|+..+|+.-++.+-.+...
T Consensus 150 ~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-- 221 (504)
T KOG0624|consen 150 ALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ------PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-- 221 (504)
T ss_pred HhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc--
Confidence 222 22223 788888888877764 333556777888999999999999988777555322
Q ss_pred cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 214 HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 214 ~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
+ ...++.+..+++..||.+.++...+++
T Consensus 222 --n--Te~~ykis~L~Y~vgd~~~sL~~iREC 249 (504)
T KOG0624|consen 222 --N--TEGHYKISQLLYTVGDAENSLKEIREC 249 (504)
T ss_pred --c--hHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 1 135678889999999999999888887
No 168
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.39 E-value=0.00073 Score=46.84 Aligned_cols=54 Identities=7% Similarity=0.167 Sum_probs=41.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 186 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 186 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..+|.+.++|++|+.++++++.+.+. ....+...|.++..+|++.+|...|+++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~a~~~~~~g~~~~A~~~l~~~ 55 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD------DPELWLQRARCLFQLGRYEEALEDLERA 55 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc------cchhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 46778888888888888888877433 2235567888888888888888888887
No 169
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.38 E-value=0.0043 Score=52.92 Aligned_cols=95 Identities=13% Similarity=0.067 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc-------CCChhhHHHHHHH
Q psy10061 114 NDLTDVENLAKQAATLFLEQG-NREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHG-------EDNYKQAAEYISR 184 (325)
Q Consensus 114 g~~~eA~~~~~~A~~~~~~~g-~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~-------~~~~~~~~~~~~~ 184 (325)
..+++|++.|.-|+-.+...+ +....|..+.+++-+|...+ .++...++++|++.|.+ .........++.-
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 345666666666665555433 45556666666666666554 34444444444444332 1122333456778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 185 AARMCVRVKEFDKAADLIRQEIGY 208 (325)
Q Consensus 185 lg~~~~~~g~~~~A~~~~~~al~~ 208 (325)
+|.++.+.|++++|+.+|.+.+..
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 999999999999999999988764
No 170
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.37 E-value=0.12 Score=51.98 Aligned_cols=249 Identities=14% Similarity=0.026 Sum_probs=157.7
Q ss_pred cccc-cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Q psy10061 24 TMTS-DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKH 102 (325)
Q Consensus 24 ~~~~-~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~ 102 (325)
|..- ..++.+|..+..++...++...- ...-+.-++.---.+.+-...|+++.|.+..+.++.-.... .+..-+.+
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~--~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~-~~~~r~~~ 499 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMH--SRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA-AYRSRIVA 499 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcc--cchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc-cchhhhhh
Confidence 5433 46899999999999988876211 01112222222233455667899999999999988766654 34455678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHhcC-CChhhH
Q psy10061 103 LEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK---SDAALTLYSRAADVAHGE-DNYKQA 178 (325)
Q Consensus 103 ~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~---~~~A~~~y~~Al~~~~~~-~~~~~~ 178 (325)
+..++.+..-.|++++|..+..++.++.+..+.+.-++.+...-+.++..+| +.+...-+...-...... ......
T Consensus 500 ~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~ 579 (894)
T COG2909 500 LSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFL 579 (894)
T ss_pred hhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhH
Confidence 9999999999999999999999999999999999988888888899988887 444444443332222111 111111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCC---hH
Q psy10061 179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE-HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEA---PE 253 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~---~e 253 (325)
.-+...+...+.+ ++.+..-....+++-.... .+....-.+..++.+++..||+++|...+.+. .....+ -.
T Consensus 580 ~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~ 656 (894)
T COG2909 580 VRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVD 656 (894)
T ss_pred HHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCch
Confidence 2222233333332 7777776666666543322 22222223358999999999999999999996 221111 11
Q ss_pred HHHHHHHHH-HH--hcCCHHHHHHHhcC
Q psy10061 254 VQTLEKLLQ-AF--DEEDPEGARQALND 278 (325)
Q Consensus 254 ~~~l~~L~~-a~--~~gd~~~~~~~~~~ 278 (325)
+.....+.. .+ .+||...+..-+.+
T Consensus 657 ~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 657 YLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 222222233 23 47888877776544
No 171
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.37 E-value=0.0019 Score=56.12 Aligned_cols=107 Identities=7% Similarity=-0.044 Sum_probs=80.7
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHH
Q psy10061 143 LEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLA 222 (325)
Q Consensus 143 l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 222 (325)
|...=..+...+|..|...|+.-++-|... .....++.+||.+++.+|+|++|...|..++.-+++. ...+..+
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s---~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s---~KApdal 218 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNS---TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS---PKAPDAL 218 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC---CCChHHH
Confidence 333333333334888888888888777664 3345788899999999999999999999887754433 2344678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHH
Q psy10061 223 VALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQ 255 (325)
Q Consensus 223 ~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~ 255 (325)
+.+|.|...+|+.+.|...|++. ..|.+++-+.
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 99999999999999999999998 6777665543
No 172
>KOG1156|consensus
Probab=97.37 E-value=0.022 Score=54.89 Aligned_cols=163 Identities=7% Similarity=-0.040 Sum_probs=101.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061 65 KAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLE 144 (325)
Q Consensus 65 ~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~ 144 (325)
--|.....+|+.++|.++-..++..-. ..-.|+.-+|.+++.-.+|++|+.||+.|+.+-..+- ..+.
T Consensus 46 mkGL~L~~lg~~~ea~~~vr~glr~d~------~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~------qilr 113 (700)
T KOG1156|consen 46 MKGLTLNCLGKKEEAYELVRLGLRNDL------KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL------QILR 113 (700)
T ss_pred hccchhhcccchHHHHHHHHHHhccCc------ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH------HHHH
Confidence 345566678888999888877765222 2234788889999999999999999999987632221 2455
Q ss_pred HHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc--HHHHHHH
Q psy10061 145 KGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH--LLAIGRL 221 (325)
Q Consensus 145 ~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~ 221 (325)
.++.+-.+.+ ++-....-.+-+++... ....|...+..+...|+|..|....+.-........+ ......+
T Consensus 114 DlslLQ~QmRd~~~~~~tr~~LLql~~~------~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~ 187 (700)
T KOG1156|consen 114 DLSLLQIQMRDYEGYLETRNQLLQLRPS------QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSEL 187 (700)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 6665555444 44444443344433322 1235666777777778888887776665554432111 1223334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 222 AVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 222 ~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.+--..++...|.++.|.+.+...
T Consensus 188 ~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 188 LLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHhh
Confidence 445566677777777787777774
No 173
>KOG1070|consensus
Probab=97.36 E-value=0.078 Score=55.53 Aligned_cols=241 Identities=12% Similarity=0.104 Sum_probs=164.5
Q ss_pred chhhhhhHHHHHHhhchhc---cc------cccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCC
Q psy10061 5 RKKEEGMEYVKSAEKHSLS---TM------TSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKS 75 (325)
Q Consensus 5 ~~~~~~~~~~~~ae~~~~~---~~------~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~ 75 (325)
|.|+-++++-+--...=++ |. ..-+..++|.+..++|++...- ..-++-...+.-..++-..-|.
T Consensus 1439 ~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~------REeeEKLNiWiA~lNlEn~yG~ 1512 (1710)
T KOG1070|consen 1439 RAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINF------REEEEKLNIWIAYLNLENAYGT 1512 (1710)
T ss_pred cCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCc------chhHHHHHHHHHHHhHHHhhCc
Confidence 5555566666666665553 42 1236789999999998876632 1113333333333333333455
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-
Q psy10061 76 FQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK- 154 (325)
Q Consensus 76 ~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~- 154 (325)
-+.-.+.|++|..... +-..|..+..+|.+.+.+++|.++++..++-++ +.-..+...+..+...+
T Consensus 1513 eesl~kVFeRAcqycd-------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~------q~~~vW~~y~~fLl~~ne 1579 (1710)
T KOG1070|consen 1513 EESLKKVFERACQYCD-------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG------QTRKVWIMYADFLLRQNE 1579 (1710)
T ss_pred HHHHHHHHHHHHHhcc-------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc------chhhHHHHHHHHHhcccH
Confidence 5566667777665443 335888999999999999999999998876655 22346788888888887
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCC
Q psy10061 155 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD 234 (325)
Q Consensus 155 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd 234 (325)
-+.|...+.+|+...+... ..+.....+.+-++.|+.+.+..+|+..+..++.-. ..|......-+..|+
T Consensus 1580 ~~aa~~lL~rAL~~lPk~e----Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRt------DlW~VYid~eik~~~ 1649 (1710)
T KOG1070|consen 1580 AEAARELLKRALKSLPKQE----HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRT------DLWSVYIDMEIKHGD 1649 (1710)
T ss_pred HHHHHHHHHHHHhhcchhh----hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccch------hHHHHHHHHHHccCC
Confidence 7888899999999887732 246778899999999999999999998887664432 355666777888999
Q ss_pred HHHHHHHHHhh-cccCCChHHHHHHHHHHHHh--cCCHHHHHH
Q psy10061 235 TVAAEKAFKEW-GNCCEAPEVQTLEKLLQAFD--EEDPEGARQ 274 (325)
Q Consensus 235 ~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~~--~gd~~~~~~ 274 (325)
..-.+..|++. ..--.....+.+...--.|+ .||...++.
T Consensus 1650 ~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1650 IKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred HHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 99999999997 22223444555555444453 566655544
No 174
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.36 E-value=0.001 Score=62.00 Aligned_cols=67 Identities=7% Similarity=-0.062 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATL 129 (325)
Q Consensus 60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~ 129 (325)
.+.+.+.|.+|...|+|++|+.+|.+++++... ...+..++.|+|.+|..+|++++|+.++++|+++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd---~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPN---PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778899999999999999999999988653 2334467999999999999999999999999987
No 175
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.36 E-value=0.001 Score=61.89 Aligned_cols=68 Identities=13% Similarity=-0.023 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHH
Q psy10061 98 HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADV 168 (325)
Q Consensus 98 ~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~ 168 (325)
.-+.++.|+|.+|..+|++++|+.+|++|+++ .-+...+..++.++|.+|..++ +++|+.++++|+++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45889999999999999999999999999877 2334444467899999998887 99999999999886
No 176
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.34 E-value=0.0045 Score=48.78 Aligned_cols=99 Identities=10% Similarity=0.045 Sum_probs=69.3
Q ss_pred HHHHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q psy10061 147 AKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALV 226 (325)
Q Consensus 147 g~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 226 (325)
-..+...+|++|++.++....-+.... .+..+...++.+|.+.++|++|+..+++-+.+.+...+ ...+++..|
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~---ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~---vdYa~Y~~g 91 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGE---YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN---VDYAYYMRG 91 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCc---ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC---ccHHHHHHH
Confidence 333444458888888887766665432 23457778999999999999999999999988765432 345677889
Q ss_pred HHHHhcCC---------------HHHHHHHHHhh-cccCCC
Q psy10061 227 LVQLARGD---------------TVAAEKAFKEW-GNCCEA 251 (325)
Q Consensus 227 ~~~~~~gd---------------~~~A~~~~~~~-~~~~~~ 251 (325)
++++.+.+ ...|...|++. ..|.+|
T Consensus 92 L~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 92 LSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 88888765 55555555554 444444
No 177
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.31 E-value=0.03 Score=46.10 Aligned_cols=200 Identities=18% Similarity=0.156 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Q psy10061 60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAA 139 (325)
Q Consensus 60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~a 139 (325)
...+...+..+...+++..+...+...... .........+...+.++...+++.+++..+.++.........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 130 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL----ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL---- 130 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh----hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch----
Confidence 455667788888899999999988887765 123344667888888888888888888888888765443311
Q ss_pred HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHH
Q psy10061 140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI 218 (325)
Q Consensus 140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 218 (325)
...+...+ ++...+ ++.|+..|.+++..... .......+...+..+...++++.|+..+.+++...... .
T Consensus 131 ~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~ 201 (291)
T COG0457 131 AEALLALG-ALYELGDYEEALELYEKALELDPE---LNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-----D 201 (291)
T ss_pred HHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC---ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-----c
Confidence 11122222 555555 99999999999552221 11223455566666888999999999999998875442 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 219 GRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 219 ~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
...+..++.++...+++..|...+... ..... .......+...+ ..++.+.+...+.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (291)
T COG0457 202 AEALLNLGLLYLKLGKYEEALEYYEKALELDPD--NAEALYNLALLLLELGRYEEALEALEK 261 (291)
T ss_pred hHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--cHHHHhhHHHHHHHcCCHHHHHHHHHH
Confidence 345678899999999999999999997 22222 122233333333 34445555554443
No 178
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.25 E-value=0.0015 Score=58.60 Aligned_cols=26 Identities=12% Similarity=0.385 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061 181 YISRAARMCVRVKEFDKAADLIRQEI 206 (325)
Q Consensus 181 ~~~~lg~~~~~~g~~~~A~~~~~~al 206 (325)
+++.++.+++.+|+|++|.+.+++++
T Consensus 203 ~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 203 LLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34444444444555555544444443
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.25 E-value=0.00085 Score=45.79 Aligned_cols=50 Identities=16% Similarity=0.323 Sum_probs=33.6
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 190 VRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 190 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
+..|+|++|+.+|++++...+.. ..+.+.++.||+..|++++|...+++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDN------PEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTS------HHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hhccCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46677778888777777654321 134456777788888888887777776
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.23 E-value=0.0081 Score=58.19 Aligned_cols=143 Identities=11% Similarity=-0.004 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH----HHHHHHHHHH
Q psy10061 54 PDYDSAADDYSKAATCFK--GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLT----DVENLAKQAA 127 (325)
Q Consensus 54 ~~~~~A~~~y~~a~~~y~--~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~----eA~~~~~~A~ 127 (325)
+.-..|-++|.++-.... ..++...|..+|++|+++-... +.++..++.+|.....+. ..+.....++
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~------a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF------TYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 344566777777643322 1233667788888877665543 233333344443221111 1111111111
Q ss_pred HHHHHc-CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061 128 TLFLEQ-GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQE 205 (325)
Q Consensus 128 ~~~~~~-g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 205 (325)
...... .+... ...+.-+|.+....+ +++|...+++|+++-. . ..++..+|.++...|++++|++.|++|
T Consensus 408 ~~a~al~~~~~~-~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p------s-~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 408 DNIVALPELNVL-PRIYEILAVQALVKGKTDEAYQAINKAIDLEM------S-WLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHhhhcccCcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------C-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111111 11111 244555566655555 8888888888877652 1 346777888888888888888888888
Q ss_pred HHHHH
Q psy10061 206 IGYHQ 210 (325)
Q Consensus 206 l~~~~ 210 (325)
+.+.+
T Consensus 480 ~~L~P 484 (517)
T PRK10153 480 FNLRP 484 (517)
T ss_pred HhcCC
Confidence 77643
No 181
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.20 E-value=0.0088 Score=55.71 Aligned_cols=116 Identities=16% Similarity=0.122 Sum_probs=88.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061 67 ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKG 146 (325)
Q Consensus 67 ~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~l 146 (325)
..++...++++.|++.+.+..... +. +..-++.++...++..+|+....+++...... +..+..-
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~-----pe----v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d------~~LL~~Q 240 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERD-----PE----VAVLLARVYLLMNEEVEAIRLLNEALKENPQD------SELLNLQ 240 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcC-----Cc----HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC------HHHHHHH
Confidence 455667788888888887743222 22 34457888888899999999999998332211 5567777
Q ss_pred HHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061 147 AKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIR 203 (325)
Q Consensus 147 g~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 203 (325)
+..+...+ ++.|+++.++|.++.... ..+|..|+.+|+.+|+|++|+-.+.
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~lsP~~------f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELSPSE------FETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCchh------HHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 77777766 999999999999887653 4688999999999999999997664
No 182
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.19 E-value=0.05 Score=45.08 Aligned_cols=116 Identities=19% Similarity=0.050 Sum_probs=73.4
Q ss_pred HHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 131 LEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH 209 (325)
Q Consensus 131 ~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 209 (325)
...|...-+......++..+...+ +++|+..++.++..-.+ ...-.-+-.+|+.+..++|++++|+..+...-
T Consensus 80 ~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D---e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--- 153 (207)
T COG2976 80 QANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKD---ENLKALAALRLARVQLQQKKADAALKTLDTIK--- 153 (207)
T ss_pred hhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchh---HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---
Confidence 344344444444455566655554 88888888888754332 12223345688899999999998888765322
Q ss_pred HHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHH
Q psy10061 210 QESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQT 256 (325)
Q Consensus 210 ~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~ 256 (325)
.....+......|.+++..||-.+|+..|+++ ..+.+....++
T Consensus 154 ----~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~~~~ 197 (207)
T COG2976 154 ----EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAAREI 197 (207)
T ss_pred ----cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHHHHH
Confidence 22334445566889999999999999999987 44433333333
No 183
>KOG4340|consensus
Probab=97.16 E-value=0.003 Score=55.47 Aligned_cols=62 Identities=15% Similarity=0.105 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 178 AAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 178 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.+.+..+.|-+..+.|+|+.|++-|+.++... |-... .-++++++++..|++..|+++-.+.
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvs---Gyqpl---lAYniALaHy~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVS---GYQPL---LAYNLALAHYSSRQYASALKHISEI 204 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhc---CCCch---hHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 35678899999999999999999999998752 22222 3367999999999999999998874
No 184
>KOG2300|consensus
Probab=97.15 E-value=0.11 Score=48.78 Aligned_cols=204 Identities=11% Similarity=0.050 Sum_probs=134.5
Q ss_pred ccHHHHHHHHHHHHhhhcccccCCCCC--HH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSLLKWKPD--YD--SAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLE 104 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~--~~--~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~ 104 (325)
+++.+|++-...+.+...+. +. .. ..+....-+|.....-+-++.|...|..|.....+. .-.+-+-.
T Consensus 337 ~~~~~al~~i~dm~~w~~r~-----p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~---dl~a~~nl 408 (629)
T KOG2300|consen 337 GDYVEALEEIVDMKNWCTRF-----PTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI---DLQAFCNL 408 (629)
T ss_pred CCHHHHHHHHHHHHHHHHhC-----CchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH---HHHHHHHH
Confidence 68888988888887766541 11 11 223333344544555667788888888777665543 34677778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCCChhhH
Q psy10061 105 QAIMMCKELNDLTDVENLAKQAATLFLEQGN-----REAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQA 178 (325)
Q Consensus 105 ~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~-----~~~aa~~l~~lg~~~~~~-~~~~A~~~y~~Al~~~~~~~~~~~~ 178 (325)
|++.+|.+.++-. + +.++++...-... ....+..+.--|...... ++.+|....++.+++....+..+-.
T Consensus 409 nlAi~YL~~~~~e---d-~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~ 484 (629)
T KOG2300|consen 409 NLAISYLRIGDAE---D-LYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLT 484 (629)
T ss_pred hHHHHHHHhccHH---H-HHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHH
Confidence 8999999977643 2 3344444333211 112222333334433334 4999999999999998666666666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHh
Q psy10061 179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD--TVAAEKAFKE 244 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd--~~~A~~~~~~ 244 (325)
+-.+.-+|.+....|+..++....+-++.+..++.+....-+...-+-.+|...|+ .....+.|..
T Consensus 485 a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 485 ACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred HHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 66778899999999999999999999999999887755444444445567777777 5555555554
No 185
>KOG4234|consensus
Probab=97.14 E-value=0.007 Score=50.24 Aligned_cols=105 Identities=13% Similarity=0.139 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10061 61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAAS 140 (325)
Q Consensus 61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa 140 (325)
+-...=|+-+...|+|.+|..-|..|+++...+. ....+.+|.|-+-+..+++.+..|++-..+|+++.-. +.
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~-~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt---y~--- 168 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTS-TEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT---YE--- 168 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc-HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch---hH---
Confidence 3344457777788888888888888888887664 3566778888899999999999999999999887443 22
Q ss_pred HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC
Q psy10061 141 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGE 172 (325)
Q Consensus 141 ~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~ 172 (325)
.++.+-+..|+... |+.|++-|.+.+++....
T Consensus 169 kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 169 KALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 24567788888887 999999999988876543
No 186
>KOG3616|consensus
Probab=97.13 E-value=0.017 Score=56.51 Aligned_cols=184 Identities=19% Similarity=0.123 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH------HHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH----------
Q psy10061 61 DDYSKAATCFKGAKSFQQCKEYLLK------AANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAK---------- 124 (325)
Q Consensus 61 ~~y~~a~~~y~~~g~~~~A~~~~~~------a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~---------- 124 (325)
++|.++|.+|.+..++++|++||.+ ++++.+- .-+......-..-|.-....|+++-|+.+|-
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarf-afp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaie 740 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARF-AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIE 740 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh-hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHH
Confidence 5677777777777777777777654 3333331 1222222222223333333444444444333
Q ss_pred ---------HHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHH------HHHHHHhcCCChhhH----------
Q psy10061 125 ---------QAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYS------RAADVAHGEDNYKQA---------- 178 (325)
Q Consensus 125 ---------~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~------~Al~~~~~~~~~~~~---------- 178 (325)
+|+.|.....|...+...|..++.-|...+ ++-|.++|. .|+.+|.+.+....+
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~ 820 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGP 820 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCc
Confidence 233333334444444444555555555554 655555553 345555554433221
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHcc------------cHHHHHHHHHHHHHHHHhcCCHHH
Q psy10061 179 ---AEYISRAARMCVRVKEFDKAADLI------RQEIGYHQESE------------HLLAIGRLAVALVLVQLARGDTVA 237 (325)
Q Consensus 179 ---~~~~~~lg~~~~~~g~~~~A~~~~------~~al~~~~~~~------------~~~~~~~~~~~lg~~~~~~gd~~~ 237 (325)
...|..-+.-+-+.|+|.+|..+| .+++.++.+.+ ........+..++.-+-..||...
T Consensus 821 e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lka 900 (1636)
T KOG3616|consen 821 EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKA 900 (1636)
T ss_pred hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhH
Confidence 122222233333445554444433 22333332222 112234456677888888888888
Q ss_pred HHHHHHhh
Q psy10061 238 AEKAFKEW 245 (325)
Q Consensus 238 A~~~~~~~ 245 (325)
|.+.|-++
T Consensus 901 ae~~flea 908 (1636)
T KOG3616|consen 901 AEEHFLEA 908 (1636)
T ss_pred HHHHHHhh
Confidence 88887764
No 187
>PRK15331 chaperone protein SicA; Provisional
Probab=97.13 E-value=0.039 Score=44.61 Aligned_cols=93 Identities=20% Similarity=0.128 Sum_probs=65.0
Q ss_pred HHHHHHHHHHh-ccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHH
Q psy10061 141 TVLEKGAKSLE-ELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIG 219 (325)
Q Consensus 141 ~~l~~lg~~~~-~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 219 (325)
......|--+. ..++++|...|+-..-+ .- .+ .+.+..||.++..+++|++|+..|-.+..+.. +++.
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~-d~-~n----~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--~dp~--- 106 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIY-DF-YN----PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--NDYR--- 106 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-Cc-Cc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--CCCC---
Confidence 33334443333 33488888888654432 11 11 24567899999999999999999988877543 3332
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 220 RLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 220 ~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..+..|.||+..|+...|..+|+.+
T Consensus 107 -p~f~agqC~l~l~~~~~A~~~f~~a 131 (165)
T PRK15331 107 -PVFFTGQCQLLMRKAAKARQCFELV 131 (165)
T ss_pred -ccchHHHHHHHhCCHHHHHHHHHHH
Confidence 2356899999999999999999997
No 188
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.12 E-value=0.022 Score=55.05 Aligned_cols=134 Identities=13% Similarity=0.057 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCC
Q psy10061 96 AYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDN 174 (325)
Q Consensus 96 ~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~ 174 (325)
+.....++.-++..|...|++++|+++.++|++. .+.....|..-|.++...| +.+|.+++..|-.+-..+
T Consensus 190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D-- 261 (517)
T PF12569_consen 190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD-- 261 (517)
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh--
Confidence 3344678889999999999999999999999876 4555678888999999887 999999988886654332
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc-----c--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 175 YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE-----H--LLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 175 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-----~--~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
+ .+-..++..+.+.|+.++|...+.. +...+ + ...-.++....|.+|+..|++..|+..|...
T Consensus 262 R----yiNsK~aKy~LRa~~~e~A~~~~~~----Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 262 R----YINSKCAKYLLRAGRIEEAEKTASL----FTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred H----HHHHHHHHHHHHCCCHHHHHHHHHh----hcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1 2445677888899999999877543 32222 1 1123456678899999999999998888774
No 189
>KOG4340|consensus
Probab=97.12 E-value=0.084 Score=46.66 Aligned_cols=100 Identities=14% Similarity=0.006 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HH---
Q psy10061 140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH----QE--- 211 (325)
Q Consensus 140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~--- 211 (325)
+....+.|-+..+.+ ++.|++-++.|++...- .+. .-.+++.++.+.|+|+.|+++..+.++-- ++
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy---qpl---lAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgI 217 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY---QPL---LAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGI 217 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhhcCC---Cch---hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence 334555666655555 99999999999876432 222 33489999999999999999987766531 11
Q ss_pred -----------cccH-----HHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 212 -----------SEHL-----LAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 212 -----------~~~~-----~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
++++ .....+++--..+++..|+++.|.+.+-..
T Consensus 218 Gm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDm 267 (459)
T KOG4340|consen 218 GMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDM 267 (459)
T ss_pred cceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcC
Confidence 2221 123344555567788889999999888774
No 190
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.10 E-value=0.019 Score=55.75 Aligned_cols=114 Identities=15% Similarity=-0.012 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---C------HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy10061 115 DLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL---K------SDAALTLYSRAADVAHGEDNYKQAAEYISRA 185 (325)
Q Consensus 115 ~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~---~------~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l 185 (325)
++.+|+.++++|+++--.. +.++..++.+|... + ...+....++++.+-. +... ..++.-+
T Consensus 357 ~~~~A~~lle~Ai~ldP~~------a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~---~~~~-~~~~~al 426 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDF------TYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPE---LNVL-PRIYEIL 426 (517)
T ss_pred HHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhccc---CcCC-hHHHHHH
Confidence 3678899999998763222 22233333333221 1 2344444444333311 1111 3567778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 186 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 186 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
|.++...|++++|...+++++++.+ . ..+|..+|.++...|++++|.+.|+++
T Consensus 427 a~~~~~~g~~~~A~~~l~rAl~L~p-----s--~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 427 AVQALVKGKTDEAYQAINKAIDLEM-----S--WLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC-----C--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888899999999999999998742 2 246788999999999999999999997
No 191
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.07 E-value=0.0047 Score=53.71 Aligned_cols=105 Identities=13% Similarity=0.087 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10061 61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAAS 140 (325)
Q Consensus 61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa 140 (325)
..|+.|...| ..|+|..|...|..-+.-|.. -.-+..++.=+|+++..+|++++|...|..+.. ..++..++.
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~---s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KAp 215 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPN---STYTPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAP 215 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCC---CcccchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCCh
Confidence 3666666655 566699999998887776653 334567888899999999999999988887754 556666777
Q ss_pred HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC
Q psy10061 141 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGE 172 (325)
Q Consensus 141 ~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~ 172 (325)
..+.++|.+...++ .++|...|++.+.-|...
T Consensus 216 dallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 216 DALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 78888888888776 888888888888777654
No 192
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.05 E-value=0.0011 Score=38.59 Aligned_cols=30 Identities=7% Similarity=0.225 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQEIGYH 209 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 209 (325)
.++.++|.+|..+|++++|+..|++++++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 577889999999999999999999988864
No 193
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=97.04 E-value=0.19 Score=43.90 Aligned_cols=88 Identities=15% Similarity=0.099 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCC
Q psy10061 155 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD 234 (325)
Q Consensus 155 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd 234 (325)
....+.++.+|.+.|...+..+....+...+|..|...|+|++|+++|+.+...+++-+=......++..+..|+...||
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 56778999999999999888888888889999999999999999999999998898877666667788889999999999
Q ss_pred HHHHHHHH
Q psy10061 235 TVAAEKAF 242 (325)
Q Consensus 235 ~~~A~~~~ 242 (325)
.+..+...
T Consensus 234 ~~~~l~~~ 241 (247)
T PF11817_consen 234 VEDYLTTS 241 (247)
T ss_pred HHHHHHHH
Confidence 88776654
No 194
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.03 E-value=0.0027 Score=43.91 Aligned_cols=58 Identities=14% Similarity=0.244 Sum_probs=47.6
Q ss_pred HHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 147 AKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 147 g~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 210 (325)
..+|...+ +++|++++++++.+.+.. ...+...|.++..+|++++|+..|+++++..+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDD------PELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCccc------chhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 34566555 999999999999886652 35788899999999999999999999997654
No 195
>KOG2047|consensus
Probab=97.02 E-value=0.039 Score=53.34 Aligned_cols=221 Identities=13% Similarity=0.101 Sum_probs=145.6
Q ss_pred ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIM 108 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~ 108 (325)
++..+-++-|.+|.+..... .-...-..++...+.+|...|+.+.|...|+++...--+. ....+.++.+=|+
T Consensus 361 ~~~~~~i~tyteAv~~vdP~-----ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~--v~dLa~vw~~wae 433 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKTVDPK-----KAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT--VEDLAEVWCAWAE 433 (835)
T ss_pred CChHHHHHHHHHHHHccCcc-----cCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc--hHHHHHHHHHHHH
Confidence 57888888999988777652 2233345788889999999999999999999998765433 3456778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHH------cCCHHHHHHHHHHH------HHHHhccC-HHHHHHHHHHHHHHHhcCCCh
Q psy10061 109 MCKELNDLTDVENLAKQAATLFLE------QGNREAASTVLEKG------AKSLEELK-SDAALTLYSRAADVAHGEDNY 175 (325)
Q Consensus 109 ~y~~~g~~~eA~~~~~~A~~~~~~------~g~~~~aa~~l~~l------g~~~~~~~-~~~A~~~y~~Al~~~~~~~~~ 175 (325)
.-.+..+++.|..+.+.|..+=.. .|...-++..++.+ +.+-+..+ ++.-...|.+.+++--..
T Consensus 434 mElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT--- 510 (835)
T KOG2047|consen 434 MELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT--- 510 (835)
T ss_pred HHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC---
Confidence 888888999999999988643111 12223334444433 33333345 555566666666653221
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHH
Q psy10061 176 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEV 254 (325)
Q Consensus 176 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~ 254 (325)
..+..|.|.++-...-++++.+.|++.+.++.=-+-+. .-..|+.-..-.+.--..+.|.+.|+++ +.+ +..-+
T Consensus 511 ---Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~d-iW~tYLtkfi~rygg~klEraRdLFEqaL~~C-pp~~a 585 (835)
T KOG2047|consen 511 ---PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYD-IWNTYLTKFIKRYGGTKLERARDLFEQALDGC-PPEHA 585 (835)
T ss_pred ---HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-CHHHH
Confidence 34566888888888899999999999998875332221 1122232333344445689999999998 533 35556
Q ss_pred HHHHHHHHHH
Q psy10061 255 QTLEKLLQAF 264 (325)
Q Consensus 255 ~~l~~L~~a~ 264 (325)
+.+.-|..-+
T Consensus 586 KtiyLlYA~l 595 (835)
T KOG2047|consen 586 KTIYLLYAKL 595 (835)
T ss_pred HHHHHHHHHH
Confidence 6665554444
No 196
>KOG4234|consensus
Probab=97.02 E-value=0.0094 Score=49.51 Aligned_cols=104 Identities=14% Similarity=0.155 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061 100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA 178 (325)
Q Consensus 100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~ 178 (325)
+..+-.=|+-+...|+|.+|..-|..|++++...-. ....-+|.+-|..+..++ .+.|+.-+.+|+++....
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty------ 167 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY------ 167 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh------
Confidence 344445567777788899999999999888776654 344455666666777776 888888888888875532
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 210 (325)
..++.+-+.+|-++.+|++|++-|.+.+++.+
T Consensus 168 ~kAl~RRAeayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 168 EKALERRAEAYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence 24666778888888888888888888877643
No 197
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.02 E-value=0.016 Score=49.40 Aligned_cols=98 Identities=16% Similarity=0.152 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHH
Q psy10061 75 SFQQCKEYLLKAANCYETNK-SAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ-------GNREAASTVLEKG 146 (325)
Q Consensus 75 ~~~~A~~~~~~a~~~~~~~~-~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~-------g~~~~aa~~l~~l 146 (325)
.+++|+..|.-|+-++...+ ++...|..+.+++-+|+.+|+.+....++++|++.|.+. ........++..+
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLi 171 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLI 171 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Confidence 45666666666666665443 566788899999999999999888888889998887764 2234556788899
Q ss_pred HHHHhccC-HHHHHHHHHHHHHHHhcC
Q psy10061 147 AKSLEELK-SDAALTLYSRAADVAHGE 172 (325)
Q Consensus 147 g~~~~~~~-~~~A~~~y~~Al~~~~~~ 172 (325)
|.+....+ +++|++++.+.+..-...
T Consensus 172 geL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 172 GELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 99999988 999999999988654433
No 198
>KOG2581|consensus
Probab=97.01 E-value=0.16 Score=46.62 Aligned_cols=212 Identities=14% Similarity=0.092 Sum_probs=133.1
Q ss_pred HHHHHHHHHHH-H-HhcCCHHHHHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 59 AADDYSKAATC-F-KGAKSFQQCKEYLLKAANCYETNKSA----YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLE 132 (325)
Q Consensus 59 A~~~y~~a~~~-y-~~~g~~~~A~~~~~~a~~~~~~~~~~----~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~ 132 (325)
-+++|-.+..+ | +..+.+.+|..+-...+.-.. .++. .-++.+|.=+..+|...|+...-...+..-+....-
T Consensus 123 Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~-~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtL 201 (493)
T KOG2581|consen 123 EIEAYLYLLVLLFLIDQKEYKEADKISDALLASIS-IQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATL 201 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhh
Confidence 35666665443 3 345777777776554433222 2222 236778888888888888876666665555555444
Q ss_pred cCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 133 QGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 133 ~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 211 (325)
..|..+.+...+.+-..|...+ |++|-..-.++. +.........+..+.-+|.+..-+++|..|.+++.+++...++
T Consensus 202 rhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 202 RHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred cCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 5578888888888888887777 898888776653 3333333344567788999999999999999999999988775
Q ss_pred cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHH-HHHHHHHHHHhcCCHHHHHHHhcC
Q psy10061 212 SEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEV-QTLEKLLQAFDEEDPEGARQALND 278 (325)
Q Consensus 212 ~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~-~~l~~L~~a~~~gd~~~~~~~~~~ 278 (325)
...-........-+.++-+-+|++++=.-+-+. +.+.+ ..--.|..|+..||...|.+.+.+
T Consensus 280 ~~alGf~q~v~k~~ivv~ll~geiPers~F~Qp-----~~~ksL~~Yf~Lt~AVr~gdlkkF~~~leq 342 (493)
T KOG2581|consen 280 HAALGFRQQVNKLMIVVELLLGEIPERSVFRQP-----GMRKSLRPYFKLTQAVRLGDLKKFNETLEQ 342 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHcCCCcchhhhcCc-----cHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 332222222333355666777876643211111 11111 122356777778888887777654
No 199
>KOG2376|consensus
Probab=97.00 E-value=0.36 Score=46.43 Aligned_cols=115 Identities=13% Similarity=0.107 Sum_probs=72.0
Q ss_pred CCHHHHHHHHH-------HH----HHHHHhcCCHHHHHHHHHHHHHHHHhcC-------------------------ChH
Q psy10061 54 PDYDSAADDYS-------KA----ATCFKGAKSFQQCKEYLLKAANCYETNK-------------------------SAY 97 (325)
Q Consensus 54 ~~~~~A~~~y~-------~a----~~~y~~~g~~~~A~~~~~~a~~~~~~~~-------------------------~~~ 97 (325)
+..++|..+++ ++ +.+++.+++|++|.+.|+..+.-....- .+.
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e 172 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPE 172 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCc
Confidence 56677777776 33 3456677888888888777633211100 011
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---CCH------HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHH
Q psy10061 98 HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ---GNR------EAASTVLEKGAKSLEELK-SDAALTLYSRAAD 167 (325)
Q Consensus 98 ~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~---g~~------~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~ 167 (325)
..-..+.|.+-++...|+|.+|++.+++|+.+.++. +|. ......-..++-+++..| ..+|...|...+.
T Consensus 173 ~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~ 252 (652)
T KOG2376|consen 173 DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK 252 (652)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 123455666777788888888888888888777653 222 233344556777777777 8888888877655
Q ss_pred H
Q psy10061 168 V 168 (325)
Q Consensus 168 ~ 168 (325)
.
T Consensus 253 ~ 253 (652)
T KOG2376|consen 253 R 253 (652)
T ss_pred h
Confidence 3
No 200
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.94 E-value=0.041 Score=51.51 Aligned_cols=119 Identities=14% Similarity=0.027 Sum_probs=74.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy10061 108 MMCKELNDLTDVENLAKQAATLFLEQ-GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA 185 (325)
Q Consensus 108 ~~y~~~g~~~eA~~~~~~A~~~~~~~-g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l 185 (325)
..+...|++++|...++..+ ... +++ ..+.-.+.++...+ .++|++.+++++.+.... .-...++
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~---~~~P~N~----~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~------~~l~~~~ 380 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLI---AAQPDNP----YYLELAGDILLEANKAKEAIERLKKALALDPNS------PLLQLNL 380 (484)
T ss_pred HHHHHhcccchHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc------cHHHHHH
Confidence 33444466666666665522 222 332 24555677777766 888888888888776543 2355678
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 186 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 186 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
|.+|.+.|++.+|+..+++.+.-.++ + +..|.-++.+|-.+|+..+|...+-+.
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~--d----p~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPE--D----PNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCC--C----chHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 88888888888888887766542111 1 123455677777777777776666665
No 201
>KOG2041|consensus
Probab=96.94 E-value=0.054 Score=52.91 Aligned_cols=80 Identities=10% Similarity=0.114 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHH------HHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061 54 PDYDSAADDYSK------AATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAA 127 (325)
Q Consensus 54 ~~~~~A~~~y~~------a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~ 127 (325)
+.+++|-..|-. |..++..+|+|-...+.++... .-.+..+.-.+++++|..+..+-.+.+|.++|.+.
T Consensus 748 g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~----~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~- 822 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGG----SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC- 822 (1189)
T ss_pred cchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccC----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 566666666643 3455666666654443332210 12345667789999999999888888888877654
Q ss_pred HHHHHcCCHHHHHHHHH
Q psy10061 128 TLFLEQGNREAASTVLE 144 (325)
Q Consensus 128 ~~~~~~g~~~~aa~~l~ 144 (325)
|+....+.+|.
T Consensus 823 ------~~~e~~~ecly 833 (1189)
T KOG2041|consen 823 ------GDTENQIECLY 833 (1189)
T ss_pred ------cchHhHHHHHH
Confidence 44444444444
No 202
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.94 E-value=0.09 Score=39.95 Aligned_cols=113 Identities=12% Similarity=-0.023 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHcC-----CHHH-HHHHHHHHHHHHhccC-HHHHHHHHHHHHHHH
Q psy10061 99 AAKHLEQAIMMCK--ELNDLTDVENLAKQAATLFLEQG-----NREA-ASTVLEKGAKSLEELK-SDAALTLYSRAADVA 169 (325)
Q Consensus 99 aa~~~~~~~~~y~--~~g~~~eA~~~~~~A~~~~~~~g-----~~~~-aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~ 169 (325)
.+.+|..++..-. .-|-|.+|..-+++|+++.+.+- |+.+ -+-++.-|+..+..++ |++++..-.++|..|
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 3444544443322 23567777777777777665542 1111 1335555666666666 777777777777666
Q ss_pred hcCCCh-----hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 170 HGEDNY-----KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 170 ~~~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 211 (325)
.+.|.. ..-+.+..+-+..+..+|+.++|+..|+.+-++..+
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE 132 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAE 132 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 554321 111234456666777788888888888888876544
No 203
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.92 E-value=0.0016 Score=37.62 Aligned_cols=30 Identities=7% Similarity=0.181 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQEIGYH 209 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 209 (325)
+++..+|.+|..+|++++|+.+|++++.+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 567889999999999999999999988764
No 204
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.89 E-value=0.098 Score=39.75 Aligned_cols=115 Identities=16% Similarity=0.093 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHhcC-----Ch-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 58 SAADDYSKAATCFK--GAKSFQQCKEYLLKAANCYETNK-----SA-YHAAKHLEQAIMMCKELNDLTDVENLAKQAATL 129 (325)
Q Consensus 58 ~A~~~y~~a~~~y~--~~g~~~~A~~~~~~a~~~~~~~~-----~~-~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~ 129 (325)
+.+..|.-+...-+ .-|.|++|...+.+|.++.+.+. |+ .--+-++..++..+..+|+|++++..-.+++..
T Consensus 5 eVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 5 EVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 44556666655443 45789999999999999998774 22 234678888999999999999999999999999
Q ss_pred HHHcCCHHHH-----HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC
Q psy10061 130 FLEQGNREAA-----STVLEKGAKSLEELK-SDAALTLYSRAADVAHGE 172 (325)
Q Consensus 130 ~~~~g~~~~a-----a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~ 172 (325)
+...|...+- +.+..+-+..++..+ .++|+..|+.+.++..+.
T Consensus 85 FNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER 133 (144)
T PF12968_consen 85 FNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAER 133 (144)
T ss_dssp HHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred HhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 9877653211 223344566677777 999999999999876543
No 205
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.88 E-value=0.081 Score=43.64 Aligned_cols=127 Identities=13% Similarity=0.039 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHH
Q psy10061 102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAE 180 (325)
Q Consensus 102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~ 180 (325)
....+++...++|++.||..+|++++. |-+..-...+..++......+ +..|...+++..+.-.....+ .
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p----d 161 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP----D 161 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC----C
Confidence 445566777777888888888887753 333222334555555555554 777777776665544332222 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHh
Q psy10061 181 YISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 244 (325)
Q Consensus 181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~ 244 (325)
...-+|.+|..+|++.+|...|+.++.-++. ..+.++ .+..+.++|+..+|...+..
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-----~~ar~~--Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISYYPG-----PQARIY--YAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHhCCC-----HHHHHH--HHHHHHHhcchhHHHHHHHH
Confidence 3445777778888888888877777765422 222332 35566667766666555554
No 206
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.87 E-value=0.0031 Score=36.54 Aligned_cols=30 Identities=17% Similarity=0.068 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 100 AKHLEQAIMMCKELNDLTDVENLAKQAATL 129 (325)
Q Consensus 100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~ 129 (325)
+.++.++|.+|..+|++++|+.+|++|+++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 356777777777777888888877777765
No 207
>KOG4648|consensus
Probab=96.86 E-value=0.0025 Score=56.91 Aligned_cols=94 Identities=10% Similarity=0.045 Sum_probs=64.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061 65 KAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLE 144 (325)
Q Consensus 65 ~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~ 144 (325)
.=|+-|.++|.|++|++||.+++.++... ...+.|-+..|.++.+|..|..-+..|+.+-+. -..+|.
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~N------pV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~------Y~KAYS 169 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHN------PVYHINRALAYLKQKSFAQAEEDCEAAIALDKL------YVKAYS 169 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCC------ccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH------HHHHHH
Confidence 33778889999999999999988777532 235677788888888888888888888766322 123455
Q ss_pred HHHHHHhccC-HHHHHHHHHHHHHHHh
Q psy10061 145 KGAKSLEELK-SDAALTLYSRAADVAH 170 (325)
Q Consensus 145 ~lg~~~~~~~-~~~A~~~y~~Al~~~~ 170 (325)
+-+..-..++ ..+|-+-|+.+|++-.
T Consensus 170 RR~~AR~~Lg~~~EAKkD~E~vL~LEP 196 (536)
T KOG4648|consen 170 RRMQARESLGNNMEAKKDCETVLALEP 196 (536)
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHhhCc
Confidence 5555555444 5666666666665543
No 208
>KOG1463|consensus
Probab=96.85 E-value=0.33 Score=43.68 Aligned_cols=248 Identities=12% Similarity=0.048 Sum_probs=158.9
Q ss_pred ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIM 108 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~ 108 (325)
+++++++..+.+-....+.. .+......+--+.--+++.++...|+..+-.+.....-..+...+ ...++.....+.+
T Consensus 18 ~~~~~~~~il~~vl~~~~~~-~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~-KakaaKlvR~Lvd 95 (411)
T KOG1463|consen 18 NQVEEAINILKSVLNKAQGA-SSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVS-KAKAAKLVRSLVD 95 (411)
T ss_pred chhhhhHHHHHHHhhhhccc-cCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHH
Confidence 45788888888876643220 000011112223444668888888988887776666555555554 3456667777766
Q ss_pred HHHHcC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy10061 109 MCKELN-DLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAA 186 (325)
Q Consensus 109 ~y~~~g-~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg 186 (325)
.+.... ..+.-+......++...+.....---..-.++..+|...+ |.+|+......+.-+++.+|.....++..-=.
T Consensus 96 ~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llES 175 (411)
T KOG1463|consen 96 MFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLES 175 (411)
T ss_pred HHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhh
Confidence 665543 4557788888888877766654433334445666666665 99999999888888888777666666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChH-HHHHHHHHH-
Q psy10061 187 RMCVRVKEFDKAADLIRQEIGYHQESE-HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPE-VQTLEKLLQ- 262 (325)
Q Consensus 187 ~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e-~~~l~~L~~- 262 (325)
-+|+...+..+|...+..|-.....+- .|..++..-+.-|..|....||..|..+|-++ ++|...+. .+++..|.-
T Consensus 176 K~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYM 255 (411)
T KOG1463|consen 176 KAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYM 255 (411)
T ss_pred HHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHH
Confidence 778888888888887777665544432 34556666667788888888999999998887 67753333 233333211
Q ss_pred ---HHhcCCHHHHHHHhcC
Q psy10061 263 ---AFDEEDPEGARQALND 278 (325)
Q Consensus 263 ---a~~~gd~~~~~~~~~~ 278 (325)
-+..+.++.....+..
T Consensus 256 lLcKIMln~~ddv~~lls~ 274 (411)
T KOG1463|consen 256 LLCKIMLNLPDDVAALLSA 274 (411)
T ss_pred HHHHHHhcCHHHHHHHHhh
Confidence 1235666666665554
No 209
>KOG1464|consensus
Probab=96.84 E-value=0.045 Score=47.68 Aligned_cols=201 Identities=14% Similarity=0.107 Sum_probs=122.6
Q ss_pred cccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy10061 26 TSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQ 105 (325)
Q Consensus 26 ~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~ 105 (325)
+.-++|++-++.|++-+++.+..+. .+|.+- +-+.+...-....+.+--..+|+.-++..+...+.+-.-..-..
T Consensus 76 f~l~~~~eMm~~Y~qlLTYIkSAVT---rNySEK--sIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtK 150 (440)
T KOG1464|consen 76 FRLGNYKEMMERYKQLLTYIKSAVT---RNYSEK--SINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTK 150 (440)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHh---ccccHH--HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccch
Confidence 3346899999999999988876442 344331 22222222234445555667777777777766554444455677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHc-CC-----HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061 106 AIMMCKELNDLTDVENLAKQAATLFLEQ-GN-----REAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA 178 (325)
Q Consensus 106 ~~~~y~~~g~~~eA~~~~~~A~~~~~~~-g~-----~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~ 178 (325)
+|.+|...+.|.+-....++.-.-+... |. ..+....|..--.+|.... ...--..|++++.+-.....+.-.
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm 230 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM 230 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH
Confidence 8999998888877666555543333221 21 1122223333334454444 444456788998887766555443
Q ss_pred HHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHhc
Q psy10061 179 AEYISRAA-RMCVRVKEFDKAADLIRQEIGYHQESEHL-LAIGRLAVALVLVQLAR 232 (325)
Q Consensus 179 ~~~~~~lg-~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~lg~~~~~~ 232 (325)
. +.+.+| ..+.+-|++.+|..-|-+|..-+.+.|++ ...+--|+.++..+...
T Consensus 231 G-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS 285 (440)
T KOG1464|consen 231 G-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKS 285 (440)
T ss_pred h-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHc
Confidence 3 444444 57888999999999999998888887754 33444455666666554
No 210
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.83 E-value=0.22 Score=41.31 Aligned_cols=109 Identities=18% Similarity=0.111 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh--cccCCChH
Q psy10061 176 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW--GNCCEAPE 253 (325)
Q Consensus 176 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~--~~~~~~~e 253 (325)
..+.-+...++..++..+++++|+..++.++.... +......+-.+++.+.+.+|.++.|...+... +.|.
T Consensus 86 ~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~---De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~---- 158 (207)
T COG2976 86 IYAVLAALELAKAEVEANNLDKAEAQLKQALAQTK---DENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA---- 158 (207)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccch---hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH----
Confidence 33344556788889999999999999999886422 22233445678999999999999999999886 4453
Q ss_pred HHHHHHHHHHH-hcCCHHHHHHHhcChhhhcccHHHHHH
Q psy10061 254 VQTLEKLLQAF-DEEDPEGARQALNDPFIKHMDVEYSRL 291 (325)
Q Consensus 254 ~~~l~~L~~a~-~~gd~~~~~~~~~~~~~~~l~~~~~~~ 291 (325)
.....--|+++ ..||.++++.++.+.+...-++...+|
T Consensus 159 ~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~~~~ 197 (207)
T COG2976 159 AIVAELRGDILLAKGDKQEARAAYEKALESDASPAAREI 197 (207)
T ss_pred HHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHHHHH
Confidence 33334458886 699999999999985555444433333
No 211
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.81 E-value=0.0036 Score=37.92 Aligned_cols=34 Identities=12% Similarity=0.233 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQES 212 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 212 (325)
+.++.++|.+|..+|++++|+.++++++.+.+.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 4688999999999999999999999999998765
No 212
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.80 E-value=0.05 Score=50.94 Aligned_cols=114 Identities=17% Similarity=0.207 Sum_probs=76.3
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q psy10061 152 ELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLA 231 (325)
Q Consensus 152 ~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~ 231 (325)
...++.|...++.-+.-.+. + ...+.-.+.++...+++++|.+.+++++.+.+.. .....++|.+++.
T Consensus 319 ~~~~d~A~~~l~~L~~~~P~--N----~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~------~~l~~~~a~all~ 386 (484)
T COG4783 319 AGQYDEALKLLQPLIAAQPD--N----PYYLELAGDILLEANKAKEAIERLKKALALDPNS------PLLQLNLAQALLK 386 (484)
T ss_pred hcccchHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc------cHHHHHHHHHHHh
Confidence 33477777777664433332 2 2455678999999999999999999999864321 2355789999999
Q ss_pred cCCHHHHHHHHHhhcccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 232 RGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 232 ~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
.|++.+|+..+++. .+...+....-.-|.+++ .+|+...+..+...
T Consensus 387 ~g~~~eai~~L~~~-~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 387 GGKPQEAIRILNRY-LFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred cCChHHHHHHHHHH-hhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 99999999999997 111111112233456676 36766666666544
No 213
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.79 E-value=0.0034 Score=42.69 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 154 KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH 209 (325)
Q Consensus 154 ~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 209 (325)
++++|+.+|++++...+.. ..++..+|.+|.++|++++|..++++++...
T Consensus 6 ~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 6 DYDEAIELLEKALQRNPDN------PEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHHHHHHHHHHHHHHTTTS------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred CHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3999999999999887653 3577799999999999999999999887653
No 214
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.78 E-value=0.31 Score=42.27 Aligned_cols=177 Identities=14% Similarity=0.061 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHH-----------------HHHHHhcCCHHHHHHHHHHHHHHHHhcCC
Q psy10061 33 EGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKA-----------------ATCFKGAKSFQQCKEYLLKAANCYETNKS 95 (325)
Q Consensus 33 eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a-----------------~~~y~~~g~~~~A~~~~~~a~~~~~~~~~ 95 (325)
-+.++|.++.+.++. ++|++|++.|+.+ +..+.+.+++++|+....+-+.++....
T Consensus 33 p~~~LY~~g~~~L~~------gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~- 105 (254)
T COG4105 33 PASELYNEGLTELQK------GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP- 105 (254)
T ss_pred CHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC-
Confidence 467778887777765 6778887777765 3456677777777777777666665433
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh---ccC-HHHHHHHHHHHHHHHhc
Q psy10061 96 AYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLE---ELK-SDAALTLYSRAADVAHG 171 (325)
Q Consensus 96 ~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~---~~~-~~~A~~~y~~Al~~~~~ 171 (325)
.+..++.-.|.++...= -....|...+-.++..+..+.. ... -..|..-...+-+..
T Consensus 106 --n~dY~~YlkgLs~~~~i---------------~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~L-- 166 (254)
T COG4105 106 --NADYAYYLKGLSYFFQI---------------DDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDAL-- 166 (254)
T ss_pred --ChhHHHHHHHHHHhccC---------------CccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHH--
Confidence 33344444444432210 0112334444444444444433 333 222332222222111
Q ss_pred CCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 172 EDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 172 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
+.-=..+|..|.+.|.|-.|+..++++++-++...... .++..+..+|..+|-.+.|...-.-.
T Consensus 167 -------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~---eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 167 -------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVR---EALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred -------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchH---HHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 12234688899999999999999999999888875422 35566888888888888888777664
No 215
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.73 E-value=0.038 Score=45.48 Aligned_cols=92 Identities=21% Similarity=0.231 Sum_probs=44.3
Q ss_pred HHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Q psy10061 145 KGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAV 223 (325)
Q Consensus 145 ~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 223 (325)
.+|+.....+ +.+|..+|++++.-. +..-...+..++...+..++...|...++...+..+...++ ...+
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~-----fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p----d~~L 164 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGI-----FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP----DGHL 164 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccc-----cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC----CchH
Confidence 3444444444 566666665555311 11112344455555555566665555555544432111112 2223
Q ss_pred HHHHHHHhcCCHHHHHHHHHhh
Q psy10061 224 ALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 224 ~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.++.++-..|.+.+|...|+.+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a 186 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVA 186 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHH
Confidence 4555566666666666666654
No 216
>KOG1839|consensus
Probab=96.73 E-value=0.098 Score=54.54 Aligned_cols=183 Identities=14% Similarity=0.032 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc-C-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCH
Q psy10061 61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETN-K-SAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ--GNR 136 (325)
Q Consensus 61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~-~-~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~--g~~ 136 (325)
+-+.+.+..-...+.|.++.+ .-+++.++... + .+...+.+|..++.++.+.++.++|+.+..+|.-+.... -|.
T Consensus 933 ~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 933 KDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 334445666667778888877 66777666632 2 356789999999999999999999999999998887664 355
Q ss_pred HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q psy10061 137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE--DNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE 213 (325)
Q Consensus 137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 213 (325)
..-...+.+++....... ...|+..+.+++.+..-. .+....+.+..+++.++...++++.|+++.+.|+.+...+.
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~ 1091 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVL 1091 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 666778888887766655 778888888887655322 23455566788999999999999999999999999766553
Q ss_pred --cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHh
Q psy10061 214 --HLLAIGRLAVALVLVQLARGDTVAAEKAFKE 244 (325)
Q Consensus 214 --~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~ 244 (325)
.....+..+..++..+-.++++..|......
T Consensus 1092 g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1092 GPKELETALSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred CccchhhhhHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 2334455667788888889999988887776
No 217
>PRK15331 chaperone protein SicA; Provisional
Probab=96.73 E-value=0.028 Score=45.38 Aligned_cols=99 Identities=13% Similarity=0.029 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCCh
Q psy10061 97 YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY 175 (325)
Q Consensus 97 ~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~ 175 (325)
...-......|--+...|++++|...|+-...+ .-.+ .+.+.-||.+++..+ |++|+.+|-.|..+-.. ++
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--d~~n----~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~--dp 105 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--DFYN----PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN--DY 105 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC--CC
Confidence 334444455555556679999999998876542 2222 336788999999887 99999999998877643 33
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061 176 KQAAEYISRAARMCVRVKEFDKAADLIRQEIG 207 (325)
Q Consensus 176 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 207 (325)
+ .....|.+|..+|+..+|...|+.+++
T Consensus 106 ~----p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 106 R----PVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred C----ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 2 356799999999999999999998887
No 218
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.72 E-value=0.035 Score=49.76 Aligned_cols=151 Identities=17% Similarity=0.167 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHH
Q psy10061 102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAE 180 (325)
Q Consensus 102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~ 180 (325)
...-+|.++...|++++|+..+.+. ++.+ +..-.-.+|-..+ ++.|.+.++..-+ .++. .
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE----~~al~Vqi~L~~~R~dlA~k~l~~~~~----~~eD----~ 164 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG-------GSLE----LLALAVQILLKMNRPDLAEKELKNMQQ----IDED----S 164 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT-------TCHH----HHHHHHHHHHHTT-HHHHHHHHHHHHC----CSCC----H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc-------Cccc----HHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCc----H
Confidence 3444567777788888877766542 3332 2333444555566 9999887766533 3222 2
Q ss_pred HHHHHHH--HHHHcC--CHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHH
Q psy10061 181 YISRAAR--MCVRVK--EFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQT 256 (325)
Q Consensus 181 ~~~~lg~--~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~ 256 (325)
++.+++. +....| ++.+|.-.|++..+.+ ......++.++.|++.+|++++|.+.++++-.- +.....+
T Consensus 165 ~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~------~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-~~~~~d~ 237 (290)
T PF04733_consen 165 ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF------GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK-DPNDPDT 237 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-ccCCHHH
Confidence 4444544 444445 7999999998854322 122356788999999999999999999998222 2334567
Q ss_pred HHHHHHHH-hcCCH-HHHHHHhcC
Q psy10061 257 LEKLLQAF-DEEDP-EGARQALND 278 (325)
Q Consensus 257 l~~L~~a~-~~gd~-~~~~~~~~~ 278 (325)
+.+++.+. -.|.+ +...+.+.+
T Consensus 238 LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 238 LANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHH
Confidence 77777764 46665 555555554
No 219
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.71 E-value=0.35 Score=41.95 Aligned_cols=183 Identities=15% Similarity=0.111 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH
Q psy10061 58 SAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNRE 137 (325)
Q Consensus 58 ~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~ 137 (325)
.+.++|+++..- ...|+|++|.+.|.....-+ -..+.. -.+...++-.+.+.+++++|+...++=+.++-...+.+
T Consensus 33 p~~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~--p~s~~~-~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 33 PASELYNEGLTE-LQKGNYEEAIKYFEALDSRH--PFSPYS-EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred CHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcC--CCCccc-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence 466788875544 47899999999998876333 222322 56778889999999999999999998887776665543
Q ss_pred HHHHHHHHHHHHHhcc------C---HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 138 AASTVLEKGAKSLEEL------K---SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 208 (325)
Q Consensus 138 ~aa~~l~~lg~~~~~~------~---~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 208 (325)
-++.-.|..+... + ..+|+.-+++.+.-|+... .+..+-. +...+
T Consensus 109 ---Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~---Ya~dA~~--------------------~i~~~ 162 (254)
T COG4105 109 ---YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR---YAPDAKA--------------------RIVKL 162 (254)
T ss_pred ---HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc---chhhHHH--------------------HHHHH
Confidence 2333333332221 1 2333444444443333321 1111111 11111
Q ss_pred HHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCC-hHHHHHHHHHHHH-hcCCHHHHHHHh
Q psy10061 209 HQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEA-PEVQTLEKLLQAF-DEEDPEGARQAL 276 (325)
Q Consensus 209 ~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~-~e~~~l~~L~~a~-~~gd~~~~~~~~ 276 (325)
. ...+..-..+|..|++.|.+..|...++.. ..+..+ .....|..|.+++ ..|-.+.+....
T Consensus 163 ----~--d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 163 ----N--DALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred ----H--HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 1 112222356899999999999999999998 556433 3445788888887 577777776653
No 220
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.64 E-value=0.0057 Score=37.03 Aligned_cols=34 Identities=12% Similarity=0.064 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ 133 (325)
Q Consensus 100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~ 133 (325)
+.++.++|.+|..+|++++|..++++++.+.++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 5678888999999999999999999998888765
No 221
>KOG1463|consensus
Probab=96.62 E-value=0.5 Score=42.57 Aligned_cols=145 Identities=10% Similarity=0.090 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHhcCCChhh
Q psy10061 100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK--SDAALTLYSRAADVAHGEDNYKQ 177 (325)
Q Consensus 100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~--~~~A~~~y~~Al~~~~~~~~~~~ 177 (325)
-....+++.+|.+.|+..+-.+..+..-..+...+. .+++.....+-..+.... .+.-+..+.+++++..+.+...-
T Consensus 48 E~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~K-akaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFL 126 (411)
T KOG1463|consen 48 EQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSK-AKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFL 126 (411)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHH
Confidence 346778899999999999888888888777777774 566777777777776553 88899999999999988765433
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 178 AAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 178 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.-..-.++..+|...++|.+|+.+....+.-..+..+....-..++--..+|....+..+|...+-.+
T Consensus 127 Rq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsA 194 (411)
T KOG1463|consen 127 RQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSA 194 (411)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHH
Confidence 33344578999999999999999999888888887776555455566677788888888888888775
No 222
>KOG2047|consensus
Probab=96.57 E-value=0.28 Score=47.73 Aligned_cols=188 Identities=10% Similarity=0.012 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH--HHc-------CCH------HHHH
Q psy10061 56 YDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMC--KEL-------NDL------TDVE 120 (325)
Q Consensus 56 ~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y--~~~-------g~~------~eA~ 120 (325)
.++...+...++..|...|.+++|.+.|.+++.--....|....-++|...-... .++ ++. +-..
T Consensus 244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~ 323 (835)
T KOG2047|consen 244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHM 323 (835)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHH
Confidence 3677788888999999999999999999999887776666555444443321111 111 111 1111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCH
Q psy10061 121 NLAKQAATLFLEQGNREAASTVLEKGAKSLEE-----LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEF 195 (325)
Q Consensus 121 ~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~-----~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 195 (325)
..++..++.....-+-.-..+.-++....+.. .++.+-+..|.+|+.-..-....-.-...+..+|.+|-..|+.
T Consensus 324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 12222221110000000000001122222221 1378888889988764432211222245788999999999999
Q ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 196 DKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 196 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
+.|...|++++..- -+.-...+..+.+.+..-+...+++.|.+..+++
T Consensus 404 ~~aRvifeka~~V~--y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A 451 (835)
T KOG2047|consen 404 DDARVIFEKATKVP--YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA 451 (835)
T ss_pred HHHHHHHHHhhcCC--ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 99999999998751 1112335667888999999999999999999996
No 223
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.57 E-value=0.0062 Score=35.18 Aligned_cols=31 Identities=6% Similarity=0.269 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 210 (325)
.++..+|.+|..+|++++|+.+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4678899999999999999999999888753
No 224
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.52 Score=41.54 Aligned_cols=216 Identities=9% Similarity=-0.013 Sum_probs=123.2
Q ss_pred ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIM 108 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~ 108 (325)
+++++|+..|++-+.. |.....+-..+--...-.++.+|...|++..-.+.-...-+....... ...+.....+.+
T Consensus 17 ~~~~~ai~~yk~iL~k---g~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk-~k~~KiirtLie 92 (421)
T COG5159 17 NDIEKAIGEYKRILGK---GVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTK-PKITKIIRTLIE 92 (421)
T ss_pred hhHHHHHHHHHHHhcC---CCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcc-hhHHHHHHHHHH
Confidence 4788888888765432 221111111222233446678888888887766666655555554432 223333333333
Q ss_pred HHH-HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy10061 109 MCK-ELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAA 186 (325)
Q Consensus 109 ~y~-~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg 186 (325)
-+. ....++.-+......++...+.....---..-.++..++...+ |..|+....-.+.-+.+-++......++.-=.
T Consensus 93 kf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllES 172 (421)
T COG5159 93 KFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLES 172 (421)
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhH
Confidence 322 2235666677777766665544332222222223444444444 88888888777776766666555555555556
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-ccc
Q psy10061 187 RMCVRVKEFDKAADLIRQEIGYHQESE-HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNC 248 (325)
Q Consensus 187 ~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~ 248 (325)
.+|....+..++...+..|-..+...- .+..++..-+.-|..+..--||..|..+|-++ ++|
T Consensus 173 Kvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 173 KVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence 677777777777777666655544332 33344555555666677777788888887776 555
No 225
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.48 E-value=0.0085 Score=34.47 Aligned_cols=30 Identities=10% Similarity=-0.047 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 101 KHLEQAIMMCKELNDLTDVENLAKQAATLF 130 (325)
Q Consensus 101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~ 130 (325)
.++..+|.+|..+|++++|+.++++++.+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 456677777777777777777777776653
No 226
>KOG2471|consensus
Probab=96.48 E-value=0.37 Score=45.46 Aligned_cols=255 Identities=11% Similarity=0.055 Sum_probs=160.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH-HHHhcCC-----------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 64 SKAATCFKGAKSFQQCKEYLLKAAN-CYETNKS-----------AYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFL 131 (325)
Q Consensus 64 ~~a~~~y~~~g~~~~A~~~~~~a~~-~~~~~~~-----------~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~ 131 (325)
+++|-++...+.|.-+..+|.+|++ ...++.+ ....-..+.|.|..|...|++-.|.+|+.++...|.
T Consensus 287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh 366 (696)
T KOG2471|consen 287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH 366 (696)
T ss_pred cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 6778888889999999999999995 3333211 122345778899999999999999999999999887
Q ss_pred HcCCHH-HHHHHHHHH--HHH--------------------------------Hh--cc-----C--HHHHHHHHHHHHH
Q psy10061 132 EQGNRE-AASTVLEKG--AKS--------------------------------LE--EL-----K--SDAALTLYSRAAD 167 (325)
Q Consensus 132 ~~g~~~-~aa~~l~~l--g~~--------------------------------~~--~~-----~--~~~A~~~y~~Al~ 167 (325)
..-..+ ..+++..-. +.. +. .. . .+-|.-|++.|+-
T Consensus 367 ~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~ 446 (696)
T KOG2471|consen 367 RNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALY 446 (696)
T ss_pred cCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhh
Confidence 664422 233322110 000 00 00 1 4667778888876
Q ss_pred HHhcC---C--------------------------------C-----h-----------hhHHHHHHHHHHHHHHcCCHH
Q psy10061 168 VAHGE---D--------------------------------N-----Y-----------KQAAEYISRAARMCVRVKEFD 196 (325)
Q Consensus 168 ~~~~~---~--------------------------------~-----~-----------~~~~~~~~~lg~~~~~~g~~~ 196 (325)
+..+. + + + .....++-..+.+-.++|+.-
T Consensus 447 Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i 526 (696)
T KOG2471|consen 447 LLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPI 526 (696)
T ss_pred cCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 65210 0 0 0 011235566677778899999
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----cc-------------------------
Q psy10061 197 KAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW----GN------------------------- 247 (325)
Q Consensus 197 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~----~~------------------------- 247 (325)
.|+..-++.+...+-.+.+...++.| .+.++..+++..+|..++.-+ +.
T Consensus 527 ~AL~~a~kLLq~~~lS~~~kfLGHiY--AaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~ 604 (696)
T KOG2471|consen 527 KALSAATKLLQLADLSKIYKFLGHIY--AAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTG 604 (696)
T ss_pred hHHHHHHHHHhhhhhhhHHHHHHHHH--HHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCC
Confidence 99999988887654444455555554 345555667777877766541 01
Q ss_pred ------cCCChHHH--HHHHHHHHHh-cCCHHHHHHHhcC--hhhhcc-c--HHHHHHhhcCCCCCCCCCCCcccccccc
Q psy10061 248 ------CCEAPEVQ--TLEKLLQAFD-EEDPEGARQALND--PFIKHM-D--VEYSRLARDLPLPSATCATPRPASIRQN 313 (325)
Q Consensus 248 ------~~~~~e~~--~l~~L~~a~~-~gd~~~~~~~~~~--~~~~~l-~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 313 (325)
|...++++ ++.+|+.++. +|+.++++.++.. .+...+ . .-+...-.+|.+.-.-.+.| ++-++
T Consensus 605 r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~---~lk~~ 681 (696)
T KOG2471|consen 605 RTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALA---RLKQC 681 (696)
T ss_pred CCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHH---HHHhc
Confidence 11223343 5568999985 9999999999976 333322 2 22445556676654444444 67788
Q ss_pred cCCCcCCCCC
Q psy10061 314 AAPSYVSPHL 323 (325)
Q Consensus 314 ~~~~~~~~~~ 323 (325)
.-+|.|.-|+
T Consensus 682 ~~~~~v~~~~ 691 (696)
T KOG2471|consen 682 THVSFVPGRL 691 (696)
T ss_pred ccccccCcch
Confidence 8888876654
No 227
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.41 E-value=0.086 Score=41.82 Aligned_cols=63 Identities=21% Similarity=0.101 Sum_probs=36.2
Q ss_pred HHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 142 VLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 142 ~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 210 (325)
++..++..+...+ +++|+..+++++.+.+-. -.++..+..+|..+|++.+|+..|++....+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~------E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYD------EEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 3444555444444 666666666666654432 13555666667777777777777766665544
No 228
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.40 E-value=0.031 Score=44.10 Aligned_cols=88 Identities=9% Similarity=0.013 Sum_probs=48.9
Q ss_pred hhHHHHHHhhchhccccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy10061 10 GMEYVKSAEKHSLSTMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANC 89 (325)
Q Consensus 10 ~~~~~~~ae~~~~~~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~ 89 (325)
+.++..+|+..++ .++|++|++.++.-...+-- + +-+-...-.++.+|...+++++|+..+.+-+++
T Consensus 10 ~~~ly~~a~~~l~-----~~~Y~~A~~~le~L~~ryP~------g--~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 10 PQELYQEAQEALQ-----KGNYEEAIKQLEALDTRYPF------G--EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHHHHHH-----hCCHHHHHHHHHHHHhcCCC------C--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3445566665443 23566666666654444322 1 222244446677777777777777777777777
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHc
Q psy10061 90 YETNKSAYHAAKHLEQAIMMCKEL 113 (325)
Q Consensus 90 ~~~~~~~~~aa~~~~~~~~~y~~~ 113 (325)
+....+ +-.++...|.++..+
T Consensus 77 hP~hp~---vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 77 HPTHPN---VDYAYYMRGLSYYEQ 97 (142)
T ss_pred CCCCCC---ccHHHHHHHHHHHHH
Confidence 665432 334455555554443
No 229
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.065 Score=47.32 Aligned_cols=100 Identities=16% Similarity=0.084 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--C--HHHHHHHHHHHHHHHhcCCCh
Q psy10061 100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL--K--SDAALTLYSRAADVAHGEDNY 175 (325)
Q Consensus 100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~--~--~~~A~~~y~~Al~~~~~~~~~ 175 (325)
+.-+--+|.+|..+|+++.|...|.+|..+ .|+... .+.-+|.++... + ..++...+++++..-..
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL---~g~n~~---~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~---- 225 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRL---AGDNPE---ILLGLAEALYYQAGQQMTAKARALLRQALALDPA---- 225 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHh---CCCCHH---HHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc----
Confidence 445677888899999999999999988766 343322 344445544322 2 67888888888764322
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 176 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 176 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 211 (325)
...++.-+|..+.+.|+|.+|+..++..++..+.
T Consensus 226 --~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 226 --NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred --cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 1356777888888999999999988888876544
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.37 E-value=0.065 Score=42.53 Aligned_cols=61 Identities=13% Similarity=0.254 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..++..++..+...|++++|+.++++++.+. +... .++..+..+|...|++..|...|+++
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-----P~~E-~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALD-----PYDE-EAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-----TT-H-HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-----CCCH-HHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3577788999999999999999999998863 2222 46677899999999999999999997
No 231
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.32 E-value=0.012 Score=33.97 Aligned_cols=30 Identities=13% Similarity=0.097 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 101 KHLEQAIMMCKELNDLTDVENLAKQAATLF 130 (325)
Q Consensus 101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~ 130 (325)
.++..+|.+|..+|++++|+.++++++++-
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 466777777777777777777777777664
No 232
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.29 E-value=0.14 Score=49.14 Aligned_cols=159 Identities=13% Similarity=0.039 Sum_probs=102.8
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCChHH--HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061 73 AKSFQQCKEYLLKAANCYETNKSAYH--AAKHLEQAIMMCKE----LNDLTDVENLAKQAATLFLEQGNREAASTVLEKG 146 (325)
Q Consensus 73 ~g~~~~A~~~~~~a~~~~~~~~~~~~--aa~~~~~~~~~y~~----~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~l 146 (325)
.||-+..+..+.++.+ ...+..+-. .--.|......+.. ..+.+.|.+........| +.-+-.+...
T Consensus 201 ~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y------P~s~lfl~~~ 273 (468)
T PF10300_consen 201 SGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY------PNSALFLFFE 273 (468)
T ss_pred CCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC------CCcHHHHHHH
Confidence 4677888888877654 222211110 01122222222222 223344545444444333 3334456677
Q ss_pred HHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q psy10061 147 AKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVAL 225 (325)
Q Consensus 147 g~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 225 (325)
|.++...+ .++|+++|++++..... ...-..-++..++.++.-+.+|++|..+|.+..+. +.+..+.+.+-.
T Consensus 274 gR~~~~~g~~~~Ai~~~~~a~~~q~~--~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-----s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 274 GRLERLKGNLEEAIESFERAIESQSE--WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-----SKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHhcCHHHHHHHHHHhccchhh--HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-----cccHHHHHHHHH
Confidence 77877666 99999999998843222 22223457889999999999999999999887663 446677788889
Q ss_pred HHHHHhcCCH-------HHHHHHHHhh
Q psy10061 226 VLVQLARGDT-------VAAEKAFKEW 245 (325)
Q Consensus 226 g~~~~~~gd~-------~~A~~~~~~~ 245 (325)
|.|+...|+. ++|.+.|.+.
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 9999999999 8999999997
No 233
>KOG0551|consensus
Probab=96.29 E-value=0.085 Score=47.22 Aligned_cols=151 Identities=15% Similarity=0.089 Sum_probs=105.3
Q ss_pred hhhhhhHHHHHHhhchhccccc---cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy10061 6 KKEEGMEYVKSAEKHSLSTMTS---DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEY 82 (325)
Q Consensus 6 ~~~~~~~~~~~ae~~~~~~~~~---~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~ 82 (325)
+.=..++.++|.+|+= -||.. .|++ ....-..++++..-. .++.++-++.|..=|+-|.+.++|..|..+
T Consensus 31 k~~~~Dew~kEm~k~P-fFMt~~p~~gd~-~~~~~~LqslK~da~-----E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~ 103 (390)
T KOG0551|consen 31 KGFHEDEWEKEMNKVP-FFMTRAPSEGDP-NPDNVCLQSLKADAE-----EGEPHEQAENYKEEGNEYFKEKRYKDAVES 103 (390)
T ss_pred CCCCHHHHHHHHhcCc-HHHhcCCCCCCC-CccHHHHHHhhhccc-----cCChHHHHHHHHHHhHHHHHhhhHHHHHHH
Confidence 3334455666666521 13322 2444 223333445554422 367788999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHH
Q psy10061 83 LLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTL 161 (325)
Q Consensus 83 ~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~ 161 (325)
|.+++. .+.+|+.--+.+|.|-+-+....|+|..++.-..+|+.+- ..-..++.+-+.++..++ ++.|+.+
T Consensus 104 Yt~Glk--~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~------P~h~Ka~~R~Akc~~eLe~~~~a~nw 175 (390)
T KOG0551|consen 104 YTEGLK--KKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK------PTHLKAYIRGAKCLLELERFAEAVNW 175 (390)
T ss_pred HHHHHh--hcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC------cchhhhhhhhhHHHHHHHHHHHHHHH
Confidence 999864 5678888889999999999899999999999888887552 122345666666766666 7888888
Q ss_pred HHHHHHHHhc
Q psy10061 162 YSRAADVAHG 171 (325)
Q Consensus 162 y~~Al~~~~~ 171 (325)
+++.+.+..+
T Consensus 176 ~ee~~~~d~e 185 (390)
T KOG0551|consen 176 CEEGLQIDDE 185 (390)
T ss_pred HhhhhhhhHH
Confidence 8777666543
No 234
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=96.28 E-value=0.11 Score=45.44 Aligned_cols=91 Identities=20% Similarity=0.120 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcC
Q psy10061 115 DLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVK 193 (325)
Q Consensus 115 ~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g 193 (325)
.-...++++.+|.+.|...+...-.......+|.-|...+ +++|+.+|+.+...+++.|...-...++..+-.++...|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 4456799999999999999998888888999999999887 999999999999999999998888899999999999999
Q ss_pred CHHHHHHHHHHH
Q psy10061 194 EFDKAADLIRQE 205 (325)
Q Consensus 194 ~~~~A~~~~~~a 205 (325)
+.+..+.+.-+.
T Consensus 233 ~~~~~l~~~leL 244 (247)
T PF11817_consen 233 DVEDYLTTSLEL 244 (247)
T ss_pred CHHHHHHHHHHH
Confidence 999888775543
No 235
>KOG1839|consensus
Probab=96.24 E-value=0.071 Score=55.53 Aligned_cols=180 Identities=16% Similarity=0.074 Sum_probs=140.3
Q ss_pred ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN--KSAYHAAKHLEQA 106 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~~~~ 106 (325)
+.+.++.+ .-++++++...+ +--..+-+.+|..++.++...+++++|+..-.++.-+.... -+.......|.++
T Consensus 946 ~~~~~~~~-~~~slnl~~~v~---~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 946 DGFSEAYE-LPESLNLLNNVM---GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred cchhhhhh-hhhhhhHHHHhh---hhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 45556666 555665554311 23346778999999999999999999999998888777654 3677888999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCC--ChhhHHHH
Q psy10061 107 IMMCKELNDLTDVENLAKQAATLFLE-QG-NREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGED--NYKQAAEY 181 (325)
Q Consensus 107 ~~~y~~~g~~~eA~~~~~~A~~~~~~-~g-~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~--~~~~~~~~ 181 (325)
+......+....|+..+..+..+..- .| +....+....+++.++...+ ++.|+.+.+.|+.+..... .....+.+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 98888888888898888888766432 22 46667777889999988866 9999999999999776652 33445678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 182 ISRAARMCVRVKEFDKAADLIRQEIGYHQES 212 (325)
Q Consensus 182 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 212 (325)
+..++.++..++++..|+.+.+....++...
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ek~t~~iy~~q 1132 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHEKVTYGIYKEQ 1132 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhHHHHHHHh
Confidence 8899999999999999999999999988753
No 236
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.20 E-value=0.0055 Score=35.74 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHH
Q psy10061 161 LYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAA 199 (325)
Q Consensus 161 ~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 199 (325)
+|++|+++.+.. ..++.++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n------~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNN------AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCC------HHHHHHHHHHHHHCcCHHhhc
Confidence 477888876554 468889999999999998886
No 237
>KOG3081|consensus
Probab=96.14 E-value=0.15 Score=44.34 Aligned_cols=169 Identities=18% Similarity=0.228 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHH
Q psy10061 102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAE 180 (325)
Q Consensus 102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~ 180 (325)
.....+.+|.+.|++++|.+.......+ +-. +++ -.++.... .+-|....++..++-.+ .
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~~~l-------E~~--Al~--VqI~lk~~r~d~A~~~lk~mq~ided--------~ 170 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLGENL-------EAA--ALN--VQILLKMHRFDLAEKELKKMQQIDED--------A 170 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhccchH-------HHH--HHH--HHHHHHHHHHHHHHHHHHHHHccchH--------H
Confidence 4555678888888888888776552111 111 111 12333333 55555555555544322 3
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHH
Q psy10061 181 YISRAARMCVRV----KEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQ 255 (325)
Q Consensus 181 ~~~~lg~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~ 255 (325)
++.+++..++.. +++.+|.-+|++.-+. +......++..+.|++.+|++++|...++.+ +.-.+. ..
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d--pe 242 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEK------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD--PE 242 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcc------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC--HH
Confidence 666666665543 3566666666543221 2233456678888888899999999988887 333222 34
Q ss_pred HHHHHHHH-Hh-cCCHHHHHHHhcC--------hh---hhcccHHHHHHhhcCCC
Q psy10061 256 TLEKLLQA-FD-EEDPEGARQALND--------PF---IKHMDVEYSRLARDLPL 297 (325)
Q Consensus 256 ~l~~L~~a-~~-~gd~~~~~~~~~~--------~~---~~~l~~~~~~~~~~l~~ 297 (325)
+|.+++-+ .. ..|++.-...+.+ +. +..-+.+..+++.+..+
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~~ekeaeFDrl~~qy~~ 297 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKHLNEKEAEFDRLVLQYDT 297 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHhcc
Confidence 55555554 33 3453333333322 22 23335566666666543
No 238
>KOG0551|consensus
Probab=96.09 E-value=0.082 Score=47.34 Aligned_cols=117 Identities=11% Similarity=0.067 Sum_probs=93.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHH
Q psy10061 87 ANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRA 165 (325)
Q Consensus 87 ~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~A 165 (325)
+.....-|++...|..|..=|+-|.+..+|..|+.+|.+.+. .+.+|.+--+.+|.|-+-.....+ |.+++.-+.+|
T Consensus 68 lK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk--~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~a 145 (390)
T KOG0551|consen 68 LKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLK--KKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAA 145 (390)
T ss_pred hhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHh--hcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333334578888999999999999999999999999999874 577888777778888777666554 99999888888
Q ss_pred HHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 166 ADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 211 (325)
+.+-... ..++.+-+.+++.+.++.+|+.++++.+.+..+
T Consensus 146 l~~~P~h------~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 146 LKLKPTH------LKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HhcCcch------hhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 7654332 467778888999999999999999988776543
No 239
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.03 E-value=0.67 Score=43.97 Aligned_cols=123 Identities=12% Similarity=0.050 Sum_probs=82.6
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC-C---------C------
Q psy10061 112 ELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE-D---------N------ 174 (325)
Q Consensus 112 ~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~-~---------~------ 174 (325)
+..+++.-+++-++|+++....- .+|.-++. +.-. ..++.++|++|++..+.. + .
T Consensus 180 RERnp~aRIkaA~eALei~pdCA------dAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~ 251 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCA------DAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWH 251 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhh------HHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhh
Confidence 34667777778888887754332 23332221 1112 677777777777655431 0 0
Q ss_pred ---hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q psy10061 175 ---YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWG 246 (325)
Q Consensus 175 ---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~ 246 (325)
..-...+...++.+..++|+.++|++.+++.+..++..+. -.++.++..+++..+.|.++...+.+++
T Consensus 252 ~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~----l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 252 RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN----LNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch----hhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 0011345678999999999999999999988876542222 2366789999999999999999999984
No 240
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.17 Score=44.80 Aligned_cols=28 Identities=11% Similarity=-0.014 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 181 YISRAARMCVRVKEFDKAADLIRQEIGY 208 (325)
Q Consensus 181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 208 (325)
-+.-||.+|+.+|+++.|...|.+++.+
T Consensus 158 gW~~Lg~~ym~~~~~~~A~~AY~~A~rL 185 (287)
T COG4235 158 GWDLLGRAYMALGRASDALLAYRNALRL 185 (287)
T ss_pred hHHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 3344444444444444444444444444
No 241
>KOG4648|consensus
Probab=95.97 E-value=0.022 Score=51.12 Aligned_cols=96 Identities=8% Similarity=-0.068 Sum_probs=74.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHH
Q psy10061 103 LEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEY 181 (325)
Q Consensus 103 ~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~ 181 (325)
+-.-|+-|.++|.|++|++||.+++.++--+- ..+.+-+..|.... +..|..-+..|+.+-+. -..+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np------V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~------Y~KA 167 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNP------VYHINRALAYLKQKSFAQAEEDCEAAIALDKL------YVKA 167 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCc------cchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH------HHHH
Confidence 45568899999999999999999987754222 24566777777776 88888888888876432 2467
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 182 ISRAARMCVRVKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 182 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 210 (325)
|.+-|..-..+|...+|-+-++.+|++-+
T Consensus 168 YSRR~~AR~~Lg~~~EAKkD~E~vL~LEP 196 (536)
T KOG4648|consen 168 YSRRMQARESLGNNMEAKKDCETVLALEP 196 (536)
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHhhCc
Confidence 78888888888899999998888887643
No 242
>KOG1070|consensus
Probab=95.95 E-value=0.47 Score=50.11 Aligned_cols=185 Identities=12% Similarity=0.081 Sum_probs=109.8
Q ss_pred HhcCCHHHHHHHHHHHHHHHH--hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061 71 KGAKSFQQCKEYLLKAANCYE--TNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAK 148 (325)
Q Consensus 71 ~~~g~~~~A~~~~~~a~~~~~--~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~ 148 (325)
..+++.++|...+++|+.... .-......-.+|.|+-+.| |.-+.-.+.+++|..+ ..+-.++..|..
T Consensus 1469 LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqy-------cd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1469 LELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQY-------CDAYTVHLKLLG 1538 (1710)
T ss_pred hhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHh-------cchHHHHHHHHH
Confidence 455666777777666655442 1111222333333333333 3333344455555433 334456777777
Q ss_pred HHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q psy10061 149 SLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVL 227 (325)
Q Consensus 149 ~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 227 (325)
+|+... +++|.++|+.-++-|++. ..+|...|..++++.+-+.|..++.+||.-.++..+. ......+.
T Consensus 1539 iy~k~ek~~~A~ell~~m~KKF~q~------~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv----~~IskfAq 1608 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKFGQT------RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV----EFISKFAQ 1608 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHHhcch------hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH----HHHHHHHH
Confidence 887776 888888888777766522 3577778888888888888888888887765552221 23345677
Q ss_pred HHHhcCCHHHHHHHHHhh-cccC-CChHHHHHHHHHHH-HhcCCHHHHHHHhcC
Q psy10061 228 VQLARGDTVAAEKAFKEW-GNCC-EAPEVQTLEKLLQA-FDEEDPEGARQALND 278 (325)
Q Consensus 228 ~~~~~gd~~~A~~~~~~~-~~~~-~~~e~~~l~~L~~a-~~~gd~~~~~~~~~~ 278 (325)
+.+..||.++++..|+.. ..+. ..+-+.+. ++. +..||..-++...++
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPKRtDlW~VY---id~eik~~~~~~vR~lfeR 1659 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPKRTDLWSVY---IDMEIKHGDIKYVRDLFER 1659 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCccchhHHHHH---HHHHHccCCHHHHHHHHHH
Confidence 778888888888888775 2332 22333222 343 357777777777776
No 243
>KOG3081|consensus
Probab=95.90 E-value=0.48 Score=41.32 Aligned_cols=148 Identities=11% Similarity=0.189 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy10061 62 DYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAAST 141 (325)
Q Consensus 62 ~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~ 141 (325)
....++.+|..-+++++|....... .-. .+..--..|+.++.+++-|....++..++ .+- .
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~-~~l----------E~~Al~VqI~lk~~r~d~A~~~lk~mq~i----ded----~ 170 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLG-ENL----------EAAALNVQILLKMHRFDLAEKELKKMQQI----DED----A 170 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhcc-chH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHcc----chH----H
Confidence 3344567788888888888765541 111 11122234566666777666666555433 221 1
Q ss_pred HHHHHHHHHhcc--C---HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHH
Q psy10061 142 VLEKGAKSLEEL--K---SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLL 216 (325)
Q Consensus 142 ~l~~lg~~~~~~--~---~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 216 (325)
.+..++..|... + +..|.-.|++--+ +......+++..+.+++.+|+|++|...++.+|.-. .++
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~------k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~d-- 240 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSE------KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKD-- 240 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhc------ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCC--
Confidence 455666666543 2 5555555544322 234445789999999999999999999999998742 222
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHH
Q psy10061 217 AIGRLAVALVLVQLARGDTVAAEK 240 (325)
Q Consensus 217 ~~~~~~~~lg~~~~~~gd~~~A~~ 240 (325)
+.++.|+.++-...|-...+.+
T Consensus 241 --petL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 241 --PETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred --HHHHHHHHHHHHHhCCChHHHH
Confidence 3566778888888776544433
No 244
>KOG0687|consensus
Probab=95.84 E-value=1.1 Score=40.34 Aligned_cols=130 Identities=10% Similarity=0.078 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHH
Q psy10061 79 CKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDA 157 (325)
Q Consensus 79 A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~ 157 (325)
-++-+.+..+=..+..-......+..+.++.|.+.|+-+.|.+++.+-.+--...|..-...-+..++|.+|...+ ..+
T Consensus 83 ki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~ 162 (393)
T KOG0687|consen 83 KIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTE 162 (393)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHH
Confidence 3344444443333322245677889999999999999999999999888777778887778888888998887765 444
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 158 ALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 158 A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 211 (325)
..++|-.++++.||.......-.--|...+...++.+|..+|-..+..+.+
T Consensus 163 ---~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 163 ---SIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred ---HHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 345666777777876555444445677777888999999999888776654
No 245
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=1.2 Score=39.32 Aligned_cols=145 Identities=6% Similarity=0.036 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C-HHHHHHHHHHHHHHHhcCCChh
Q psy10061 99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL-K-SDAALTLYSRAADVAHGEDNYK 176 (325)
Q Consensus 99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~-~-~~~A~~~y~~Al~~~~~~~~~~ 176 (325)
.-.+..+++.+|...|++..-.+.....-+.+...-. .+.+.....+-..+... + ++..+..+...+++..+.+...
T Consensus 44 qE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk-~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~f 122 (421)
T COG5159 44 QEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTK-PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKF 122 (421)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcc-hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999988777666666555554432 34455566666666544 3 8889999999999887765443
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHh
Q psy10061 177 QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 244 (325)
Q Consensus 177 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~ 244 (325)
..-+.-.++..++.+.|+|.+|+....-.+.-+....+.......++--..+|....+..++...+-.
T Consensus 123 Lr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTa 190 (421)
T COG5159 123 LRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTA 190 (421)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHH
Confidence 33344457889999999999999998888877777665444434445555666666666666555554
No 246
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.80 E-value=0.92 Score=38.53 Aligned_cols=69 Identities=6% Similarity=-0.000 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 54 PDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATL 129 (325)
Q Consensus 54 ~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~ 129 (325)
.+-+.|.-.|++ |.+|-..|-+.-|..-|.+++.+..+. +.+++-+|.-+...|+|+-|.+.+...+++
T Consensus 60 ~~eeRA~l~fER-GvlYDSlGL~~LAR~DftQaLai~P~m------~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL 128 (297)
T COG4785 60 TDEERAQLLFER-GVLYDSLGLRALARNDFSQALAIRPDM------PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 128 (297)
T ss_pred ChHHHHHHHHHh-cchhhhhhHHHHHhhhhhhhhhcCCCc------HHHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence 444566666665 888888898888988888888887655 457888888888889999998888877654
No 247
>KOG4642|consensus
Probab=95.75 E-value=0.052 Score=46.41 Aligned_cols=97 Identities=15% Similarity=0.057 Sum_probs=74.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061 65 KAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLE 144 (325)
Q Consensus 65 ~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~ 144 (325)
.=|+.+.....|+.|+++|.+++-+.... +..|.|-+.+|.+..+++.+..-.++|+++. ...+..+.
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~------~~Y~tnralchlk~~~~~~v~~dcrralql~------~N~vk~h~ 82 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTV------ASYYTNRALCHLKLKHWEPVEEDCRRALQLD------PNLVKAHY 82 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCc------chhhhhHHHHHHHhhhhhhhhhhHHHHHhcC------hHHHHHHH
Confidence 33555666677888888888887665432 4578888999999999999999999988773 33344566
Q ss_pred HHHHHHhccC-HHHHHHHHHHHHHHHhcCC
Q psy10061 145 KGAKSLEELK-SDAALTLYSRAADVAHGED 173 (325)
Q Consensus 145 ~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~ 173 (325)
-+|.+..... |++|+.++++|..+.+...
T Consensus 83 flg~~~l~s~~~~eaI~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 83 FLGQWLLQSKGYDEAIKVLQRAYSLLREQP 112 (284)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 7777777665 9999999999999988753
No 248
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.73 E-value=0.012 Score=33.45 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 181 YISRAARMCVRVKEFDKAADLIRQEIGYH 209 (325)
Q Consensus 181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 209 (325)
++.++|.++.+.|++++|+..|++.+..+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 45677777777777777777777776654
No 249
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.70 E-value=2.1 Score=41.16 Aligned_cols=121 Identities=14% Similarity=0.033 Sum_probs=82.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHHHhcc---C--HHHHHHHHHHHHHHHhcCCChhhHHHHH
Q psy10061 113 LNDLTDVENLAKQAATLFLEQGNREAASTVLEKG-----AKSLEEL---K--SDAALTLYSRAADVAHGEDNYKQAAEYI 182 (325)
Q Consensus 113 ~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~l-----g~~~~~~---~--~~~A~~~y~~Al~~~~~~~~~~~~~~~~ 182 (325)
.||.+..+..+.++.+ .++.......+.-+ -..+... + .+.+.+.+......|+.. .--+
T Consensus 201 ~gdR~~GL~~L~~~~~----~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s------~lfl 270 (468)
T PF10300_consen 201 SGDRELGLRLLWEASK----SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS------ALFL 270 (468)
T ss_pred CCcHHHHHHHHHHHhc----cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc------HHHH
Confidence 3777888888877654 23222222222222 1112221 2 677777777777777643 3456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 183 SRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 183 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..-|.++...|+.++|++.|++++....+..+ ...-++..++.++..+.|+++|.++|.+.
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Q--l~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQ--LHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHh--HHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 78899999999999999999999854333322 23456789999999999999999999997
No 250
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=95.48 E-value=1.3 Score=41.89 Aligned_cols=165 Identities=13% Similarity=0.057 Sum_probs=86.7
Q ss_pred cccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHHhc-----
Q psy10061 26 TSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSF-------QQCKEYLLKAANCYETN----- 93 (325)
Q Consensus 26 ~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~-------~~A~~~~~~a~~~~~~~----- 93 (325)
++-++|+-|...|+-..+-++. .+-|...+.+++-++.+....+.. ++...+++.|...|.+.
T Consensus 219 Fml~Dy~~A~s~Y~~~k~Df~~-----Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~~~~ 293 (414)
T PF12739_consen 219 FMLRDYELAYSTYRLLKKDFKN-----DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSALPRC 293 (414)
T ss_pred HHHccHHHHHHHHHHHHHHHhh-----chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhcccc
Confidence 3334677777777766666654 244444455555555554444422 24455555555555552
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhc
Q psy10061 94 KSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFL--EQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHG 171 (325)
Q Consensus 94 ~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~--~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~ 171 (325)
.....+.++....++++...+.+.++...+-++...+. ..+. .+.+-.+.+++.+| .+ ..
T Consensus 294 ~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~-~~~alllE~~a~~~----------------~~-~~ 355 (414)
T PF12739_consen 294 SLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRP-FGSALLLEQAAYCY----------------AS-LR 355 (414)
T ss_pred ccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhh-HhhHHHHHHHHHhh----------------cc-cc
Confidence 22234445555555555555665555555444443322 1111 11333334444333 00 11
Q ss_pred C-C---C---hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q psy10061 172 E-D---N---YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE 213 (325)
Q Consensus 172 ~-~---~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 213 (325)
. . . .+..+--+.-.|.-|.+.|+...|+.+|.+++.++...+
T Consensus 356 ~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~~~ 404 (414)
T PF12739_consen 356 SNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEGKG 404 (414)
T ss_pred cCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCC
Confidence 1 1 0 223333444566788999999999999999999887543
No 251
>KOG1538|consensus
Probab=95.46 E-value=0.75 Score=44.94 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=16.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 185 AARMCVRVKEFDKAADLIRQEIGY 208 (325)
Q Consensus 185 lg~~~~~~g~~~~A~~~~~~al~~ 208 (325)
+-.+++..++|++|..+.++.-+.
T Consensus 779 iVqlHve~~~W~eAFalAe~hPe~ 802 (1081)
T KOG1538|consen 779 LVQLHVETQRWDEAFALAEKHPEF 802 (1081)
T ss_pred HhhheeecccchHhHhhhhhCccc
Confidence 334677889999998877664443
No 252
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=95.40 E-value=2.5 Score=45.65 Aligned_cols=52 Identities=10% Similarity=0.007 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q psy10061 58 SAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMM 109 (325)
Q Consensus 58 ~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~ 109 (325)
..+....-.|++|...|.|.+|+..|..|+.+.+..+|+-..|.+++.++.+
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~ 291 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVC 291 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHH
Confidence 3456677789999999999999999999999999999999999999998755
No 253
>KOG4642|consensus
Probab=95.38 E-value=0.12 Score=44.28 Aligned_cols=98 Identities=12% Similarity=0.094 Sum_probs=76.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHH
Q psy10061 104 EQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYI 182 (325)
Q Consensus 104 ~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~ 182 (325)
..-|+.|..-.+|+.|+.+|-+|+.+ ....+..+.+-+..+.+.+ ++....-.++|+++... .....
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N------~vk~h 81 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICI------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN------LVKAH 81 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhc------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH------HHHHH
Confidence 33455666667899999999999866 2334556778888888776 99999999999987543 34567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q psy10061 183 SRAARMCVRVKEFDKAADLIRQEIGYHQESE 213 (325)
Q Consensus 183 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 213 (325)
.-+|....+...|++|+..++++..+.++..
T Consensus 82 ~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 82 YFLGQWLLQSKGYDEAIKVLQRAYSLLREQP 112 (284)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999998887643
No 254
>KOG2581|consensus
Probab=95.36 E-value=2.1 Score=39.60 Aligned_cols=223 Identities=9% Similarity=0.047 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Q psy10061 59 AADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREA 138 (325)
Q Consensus 59 A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~ 138 (325)
++.+|.-....|...++...-...+..-+....--.+..+.+...+-+...|...+.|+.|-....+.. |-....-..
T Consensus 168 ~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne 245 (493)
T KOG2581|consen 168 AAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNE 245 (493)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHH
Confidence 356666666777777776665555555444443334778888888889999999888888777666543 222333336
Q ss_pred HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHH
Q psy10061 139 ASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLA 217 (325)
Q Consensus 139 aa~~l~~lg~~~~~~-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 217 (325)
.++.+.-+|.+..-+ +|..|.+++.+|+...+.....-..-.+-..+-.+-.-+|.+++=.-. ++.+....
T Consensus 246 ~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~F--------~Qp~~~ks 317 (493)
T KOG2581|consen 246 WARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSVF--------RQPGMRKS 317 (493)
T ss_pred HHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhh--------cCccHHHH
Confidence 788888899998755 599999999999988776332211112222233344456777753322 22221111
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHHhcCCHHHHHHHhcChhhhcccHHHHHHhhcCC
Q psy10061 218 IGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAFDEEDPEGARQALNDPFIKHMDVEYSRLARDLP 296 (325)
Q Consensus 218 ~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~~~gd~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 296 (325)
.. .|+.+.. -...||..+-.+.++++ +.|..-+-..++.+| +.+-+.+.++.-.+..----+.+|+++|.
T Consensus 318 L~-~Yf~Lt~-AVr~gdlkkF~~~leq~k~~f~~D~ty~LivRL-------R~NVIkTgIR~ISlsYSRISl~DIA~kL~ 388 (493)
T KOG2581|consen 318 LR-PYFKLTQ-AVRLGDLKKFNETLEQFKDKFQADGTYTLIVRL-------RHNVIKTGIRKISLSYSRISLQDIAKKLG 388 (493)
T ss_pred HH-HHHHHHH-HHHHhhHHHHHHHHHHHHHHHhhCCcchHHHHH-------HHHHHHHhhhheeeeeeeccHHHHHHHhc
Confidence 21 1122222 13457777777777777 556433333333333 22334444555111122223455666666
Q ss_pred CCCC
Q psy10061 297 LPSA 300 (325)
Q Consensus 297 ~~~~ 300 (325)
+-+.
T Consensus 389 l~Se 392 (493)
T KOG2581|consen 389 LNSE 392 (493)
T ss_pred CCCc
Confidence 5444
No 255
>KOG2796|consensus
Probab=95.28 E-value=1.8 Score=37.92 Aligned_cols=135 Identities=10% Similarity=0.040 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061 100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA 178 (325)
Q Consensus 100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~ 178 (325)
..+.+.+..++.-.+.|.-.++.+.+.++- +.+.--.....+|.+-.+-+ .+.|..++++.-......+.....
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-----~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~ 251 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKY-----YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGK 251 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHh-----CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchh
Confidence 445555667777777888888888887762 22333345667777777666 666667776555444444445555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.-+..+.+.+|.-.++|.+|...|.+.+..- +.. +.+-++-++|.+..|+...|++..+.+
T Consensus 252 ~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D----~~~--~~a~NnKALcllYlg~l~DAiK~~e~~ 312 (366)
T KOG2796|consen 252 IMVLMNSAFLHLGQNNFAEAHRFFTEILRMD----PRN--AVANNNKALCLLYLGKLKDALKQLEAM 312 (366)
T ss_pred HHHHhhhhhheecccchHHHHHHHhhccccC----CCc--hhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888889999999999988888766532 111 234467788888899999999998886
No 256
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=2 Score=38.08 Aligned_cols=133 Identities=11% Similarity=0.070 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-H
Q psy10061 77 QQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-S 155 (325)
Q Consensus 77 ~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~ 155 (325)
++-++-+.+.++-.+..+-....+.+..|+|+.|...++.+.+.++..+.+.-....|-.-...-+-.++|.+|.... .
T Consensus 92 eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV 171 (412)
T COG5187 92 EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVV 171 (412)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHH
Confidence 444444544444343333345678899999999999999999999999988877777877777777888898888776 4
Q ss_pred HHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 156 DAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES 212 (325)
Q Consensus 156 ~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 212 (325)
.+.++ .+-.+.++.|+.......-.--|...+...++.+|..++-..+..+.++
T Consensus 172 ~e~lE---~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~ 225 (412)
T COG5187 172 EESLE---VADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESS 225 (412)
T ss_pred HHHHH---HHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccccc
Confidence 44443 4445666777765544444446666777788999988888777666543
No 257
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.25 E-value=0.045 Score=32.72 Aligned_cols=33 Identities=9% Similarity=0.224 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQES 212 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 212 (325)
+++..+|.+.+..++|++|+.-|++++++.+++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 578899999999999999999999999986654
No 258
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.22 E-value=0.035 Score=34.30 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 211 (325)
.++..+|.+|..+|++++|+++|++++...+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 36778999999999999999999999987543
No 259
>KOG2041|consensus
Probab=94.96 E-value=4.3 Score=40.31 Aligned_cols=32 Identities=9% Similarity=0.271 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy10061 56 YDSAADDYSKAATCFKGAKSFQQCKEYLLKAA 87 (325)
Q Consensus 56 ~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~ 87 (325)
-+.-.++|...|.-|.....|++|.++|.+..
T Consensus 792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445778888888888888888888887654
No 260
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.88 E-value=2.6 Score=37.44 Aligned_cols=141 Identities=21% Similarity=0.187 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 75 SFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKE----LNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSL 150 (325)
Q Consensus 75 ~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~----~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~ 150 (325)
+..+|.+.|..+.+ . +...+..++|.+|.. ..++.+|..+|++|.+. |+... ..+...+|.+|
T Consensus 92 ~~~~A~~~~~~~a~----~----g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~----g~~~a-~~~~~~l~~~~ 158 (292)
T COG0790 92 DKTKAADWYRCAAA----D----GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL----GNVEA-ALAMYRLGLAY 158 (292)
T ss_pred cHHHHHHHHHHHhh----c----ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc----CChhH-HHHHHHHHHHH
Confidence 45666766663321 1 223456678888876 34888999999998744 54433 44567778777
Q ss_pred hcc----C----HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcccHHHH
Q psy10061 151 EEL----K----SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVR----VKEFDKAADLIRQEIGYHQESEHLLAI 218 (325)
Q Consensus 151 ~~~----~----~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~ 218 (325)
... . ...|+..|.+|.+.. ...+...+|.+|.. ..++.+|+.+|.++.+. ++
T Consensus 159 ~~g~~~~~~~~~~~~A~~~~~~aa~~~--------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~----g~---- 222 (292)
T COG0790 159 LSGLQALAVAYDDKKALYLYRKAAELG--------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ----GD---- 222 (292)
T ss_pred HcChhhhcccHHHHhHHHHHHHHHHhc--------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----CC----
Confidence 764 2 348888888887654 23567788888765 34899999999988663 33
Q ss_pred HHHHHHHHHHHHhcC---------------CHHHHHHHHHhh
Q psy10061 219 GRLAVALVLVQLARG---------------DTVAAEKAFKEW 245 (325)
Q Consensus 219 ~~~~~~lg~~~~~~g---------------d~~~A~~~~~~~ 245 (325)
....+.++ ++...| +...|...+...
T Consensus 223 ~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~ 263 (292)
T COG0790 223 GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKA 263 (292)
T ss_pred HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHH
Confidence 23445667 555555 666666666665
No 261
>PRK11906 transcriptional regulator; Provisional
Probab=94.85 E-value=1.4 Score=41.62 Aligned_cols=99 Identities=12% Similarity=0.039 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCC
Q psy10061 155 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD 234 (325)
Q Consensus 155 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd 234 (325)
..+|.++-++|+++-..+ +.++..+|.++...++++.|+..|++|+.+.+. .+.++...|.++...|+
T Consensus 320 ~~~a~~~A~rAveld~~D------a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn------~A~~~~~~~~~~~~~G~ 387 (458)
T PRK11906 320 AQKALELLDYVSDITTVD------GKILAIMGLITGLSGQAKVSHILFEQAKIHSTD------IASLYYYRALVHFHNEK 387 (458)
T ss_pred HHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc------cHHHHHHHHHHHHHcCC
Confidence 677888888888765443 357788999999999999999999999887432 22456678899999999
Q ss_pred HHHHHHHHHhhcccCCChHHHHHHHH-HHHHh
Q psy10061 235 TVAAEKAFKEWGNCCEAPEVQTLEKL-LQAFD 265 (325)
Q Consensus 235 ~~~A~~~~~~~~~~~~~~e~~~l~~L-~~a~~ 265 (325)
.++|.+.++++-..++.+.+..+.++ ++.|-
T Consensus 388 ~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~ 419 (458)
T PRK11906 388 IEEARICIDKSLQLEPRRRKAVVIKECVDMYV 419 (458)
T ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHHHc
Confidence 99999999998555555545444444 44653
No 262
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.76 E-value=0.12 Score=43.67 Aligned_cols=98 Identities=12% Similarity=0.085 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q psy10061 136 REAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH 214 (325)
Q Consensus 136 ~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 214 (325)
.+.-+..+..-|.+|...+ .+-|.--+.+++.+.+.. .++++-+|..+...|+|+.|.+.|...+++-+.-
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m------~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-- 132 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDM------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-- 132 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc------HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc--
Confidence 3455566677777777777 667777777777765443 4677888888888888888888888777753221
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 215 LLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 215 ~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..++.|.|+....-|++.-|.+-+.++
T Consensus 133 ----~Ya~lNRgi~~YY~gR~~LAq~d~~~f 159 (297)
T COG4785 133 ----NYAHLNRGIALYYGGRYKLAQDDLLAF 159 (297)
T ss_pred ----hHHHhccceeeeecCchHhhHHHHHHH
Confidence 135567777777788888888777775
No 263
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.67 E-value=3 Score=37.09 Aligned_cols=158 Identities=15% Similarity=0.046 Sum_probs=98.1
Q ss_pred cccHHHHHHHHHHHHhhhc------ccc-c----CCCCCHHHHHHHHHHH------------HHHHHh----cCCHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLK------TSL-L----KWKPDYDSAADDYSKA------------ATCFKG----AKSFQQCK 80 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~------~~~-~----~~~~~~~~A~~~y~~a------------~~~y~~----~g~~~~A~ 80 (325)
.+.+..+.+.+.++..... -+. + ....|+..|.+.|..+ |.+|.. ..+..+|.
T Consensus 54 ~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~ 133 (292)
T COG0790 54 PPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKAL 133 (292)
T ss_pred cccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHH
Confidence 3578888888887764111 100 0 1146677777777765 345554 34888999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Q psy10061 81 EYLLKAANCYETNKSAYHAAKHLEQAIMMCKELN-------DLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL 153 (325)
Q Consensus 81 ~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g-------~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~ 153 (325)
..|.+|++.- +... +.+...++.+|..-. +...|..+|.+|.... ...+..++|.+|...
T Consensus 134 ~~~~~Aa~~g----~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--------~~~a~~~lg~~y~~G 200 (292)
T COG0790 134 KYYEKAAKLG----NVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--------NPDAQLLLGRMYEKG 200 (292)
T ss_pred HHHHHHHHcC----ChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--------CHHHHHHHHHHHHcC
Confidence 9998887543 3222 455677777777631 2225666666665443 344677888888754
Q ss_pred -----CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHH
Q psy10061 154 -----KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVK---------------EFDKAADLIRQEIG 207 (325)
Q Consensus 154 -----~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g---------------~~~~A~~~~~~al~ 207 (325)
++.+|..+|.+|.+. ++ ......++ ++...| +...|..++..+-.
T Consensus 201 ~Gv~~d~~~A~~wy~~Aa~~----g~----~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~ 265 (292)
T COG0790 201 LGVPRDLKKAFRWYKKAAEQ----GD----GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACE 265 (292)
T ss_pred CCCCcCHHHHHHHHHHHHHC----CC----HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHH
Confidence 399999999999763 33 34556677 666555 55666666655443
No 264
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.66 E-value=0.051 Score=30.77 Aligned_cols=30 Identities=17% Similarity=0.060 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh-cccCC
Q psy10061 221 LAVALVLVQLARGDTVAAEKAFKEW-GNCCE 250 (325)
Q Consensus 221 ~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~ 250 (325)
+++.+|.++...|++++|.+.|+++ ..|.+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5678999999999999999999997 55543
No 265
>KOG2471|consensus
Probab=94.64 E-value=0.071 Score=50.07 Aligned_cols=84 Identities=11% Similarity=0.008 Sum_probs=64.8
Q ss_pred HHHHHHHHhccC-HHHHHHHHHHHHH-HHhcC--C---C------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 143 LEKGAKSLEELK-SDAALTLYSRAAD-VAHGE--D---N------YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH 209 (325)
Q Consensus 143 l~~lg~~~~~~~-~~~A~~~y~~Al~-~~~~~--~---~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 209 (325)
++++|-|+...+ |.-+..+|.+|+. ...+. | . .....+++.++|..|...|+.-.|.++|.++...+
T Consensus 286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf 365 (696)
T KOG2471|consen 286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF 365 (696)
T ss_pred ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence 478898888888 9999999999995 32221 1 0 11235788999999999999999999999999887
Q ss_pred HHcccHHHHHHHHHHHHHHHHhc
Q psy10061 210 QESEHLLAIGRLAVALVLVQLAR 232 (325)
Q Consensus 210 ~~~~~~~~~~~~~~~lg~~~~~~ 232 (325)
.. .++.|++++.|++..
T Consensus 366 h~------nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 366 HR------NPRLWLRLAECCIMA 382 (696)
T ss_pred hc------CcHHHHHHHHHHHHH
Confidence 54 335778888888764
No 266
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=94.62 E-value=2.9 Score=36.79 Aligned_cols=154 Identities=13% Similarity=0.063 Sum_probs=86.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHH
Q psy10061 54 PDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLT-DVENLAKQAATLFLE 132 (325)
Q Consensus 54 ~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~-eA~~~~~~A~~~~~~ 132 (325)
++|++|+++....+..+.+.|++.-+.+.-.-.++++.+.+...... ...+++.+....+.-+ +-..+..+|+.....
T Consensus 4 kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~-~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~ 82 (260)
T PF04190_consen 4 KKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEE-SIARLIELISLFPPEEPERKKFIKAAIKWSKF 82 (260)
T ss_dssp T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHH-HHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCCcchHHHHHHHHHHHHcc
Confidence 56667777766766666677777777776666666766654333222 3356666666554322 234555666666533
Q ss_pred cCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHH-----------HHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHH
Q psy10061 133 QGNREAASTVLEKGAKSLEELK-SDAALTLYSRA-----------ADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAAD 200 (325)
Q Consensus 133 ~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~A-----------l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 200 (325)
.+...+-...+..+|.+|-..+ +.+|..|+--+ +......+..........+.-.-|...++...|..
T Consensus 83 ~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~ 162 (260)
T PF04190_consen 83 GSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANE 162 (260)
T ss_dssp SS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHH
Confidence 3344455667888888887776 88888877321 11111223333333334445556778899999988
Q ss_pred HHHHHHHH
Q psy10061 201 LIRQEIGY 208 (325)
Q Consensus 201 ~~~~al~~ 208 (325)
.+..-++.
T Consensus 163 ~~~~f~~~ 170 (260)
T PF04190_consen 163 LFDTFTSK 170 (260)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766654
No 267
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.61 E-value=3.1 Score=36.99 Aligned_cols=59 Identities=8% Similarity=-0.012 Sum_probs=28.3
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHH
Q psy10061 72 GAKSFQQCKEYLLKAANCYETNK--SAYHAAKHLEQAIMMCKELN-DLTDVENLAKQAATLF 130 (325)
Q Consensus 72 ~~g~~~~A~~~~~~a~~~~~~~~--~~~~aa~~~~~~~~~y~~~g-~~~eA~~~~~~A~~~~ 130 (325)
..|+++.|..++.++-....... .....+..+.++|.-....+ ++++|+.++++|.++.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l 66 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDIL 66 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 34555555555555544444221 11234445555555555555 5555555555555554
No 268
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.37 E-value=0.63 Score=32.64 Aligned_cols=64 Identities=9% Similarity=0.119 Sum_probs=50.8
Q ss_pred HHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH
Q psy10061 149 SLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL 215 (325)
Q Consensus 149 ~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 215 (325)
+|...+..+|+..++++++..... ...-.++.-+..+|...|+|.+.+++-.+-++++++.+++
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~---~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDR---EDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 454445899999999999876553 3345677788899999999999999999989988887654
No 269
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.21 E-value=4.6 Score=37.38 Aligned_cols=239 Identities=15% Similarity=0.106 Sum_probs=129.1
Q ss_pred ccHHHHHHHHHHHHhhhccc---c--------cCCCCCHHHHHHHHHHHHH-----------H---HHhcCCHHHHHHHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTS---L--------LKWKPDYDSAADDYSKAAT-----------C---FKGAKSFQQCKEYL 83 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~---~--------~~~~~~~~~A~~~y~~a~~-----------~---y~~~g~~~~A~~~~ 83 (325)
|+=..|-++-.++-+++... + -...++|+.|-..|+-... + -+..|+.+-|..+-
T Consensus 98 Gda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yA 177 (531)
T COG3898 98 GDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYA 177 (531)
T ss_pred CchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHH
Confidence 45556666666665554320 0 0014888888888886541 1 24678888888888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHhccCHHHHHH
Q psy10061 84 LKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNR---EAASTVLEKGAKSLEELKSDAALT 160 (325)
Q Consensus 84 ~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~---~~aa~~l~~lg~~~~~~~~~~A~~ 160 (325)
..+......+. +. ....-......|+++.|+.+.+.......-..+. ..++-..-+.+... ..++.+|..
T Consensus 178 e~Aa~~Ap~l~--WA----~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~ 250 (531)
T COG3898 178 ERAAEKAPQLP--WA----ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASARD 250 (531)
T ss_pred HHHHhhccCCc--hH----HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHHH
Confidence 88777766552 22 2222233456699999999988766544333332 23322222222222 223555555
Q ss_pred HHHHHHHHHhc--------------CCChhhHHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHH
Q psy10061 161 LYSRAADVAHG--------------EDNYKQAAEY---------ISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLA 217 (325)
Q Consensus 161 ~y~~Al~~~~~--------------~~~~~~~~~~---------~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 217 (325)
.-.+++++... .++....+.+ +=.|+.+|....--+.+++-++++-.+ .++...
T Consensus 251 ~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L-~slk~n-- 327 (531)
T COG3898 251 DALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKL-ESLKPN-- 327 (531)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHH-HhcCcc--
Confidence 55555544321 2222222222 224666677666666677777766554 222211
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHhcCCHHHHHHHhc
Q psy10061 218 IGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAFDEEDPEGARQALN 277 (325)
Q Consensus 218 ~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~~~gd~~~~~~~~~ 277 (325)
.....+..+..-+..|++..|...-+........+..-.|..=++..+.||.+.++.-+.
T Consensus 328 naes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 328 NAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred chHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHH
Confidence 223445677788889999999888777633322222222211122234688887776554
No 270
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.20 E-value=3.4 Score=39.36 Aligned_cols=123 Identities=11% Similarity=0.034 Sum_probs=81.7
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc----------CCH---
Q psy10061 70 FKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ----------GNR--- 136 (325)
Q Consensus 70 y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~----------g~~--- 136 (325)
...-.+...-+++-.+|+++.... +.+|.-+++= ......++.++|++|++..+.. |..
T Consensus 178 AWRERnp~aRIkaA~eALei~pdC------AdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALEINPDC------ADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA 249 (539)
T ss_pred HHhcCCHHHHHHHHHHHHHhhhhh------hHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence 445667777777777888777543 4455544432 2234678888888887764332 111
Q ss_pred ------HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10061 137 ------EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQ 204 (325)
Q Consensus 137 ------~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 204 (325)
.--..+-.++|.+..+.| .++|++.+++.+..+...+ ...+..++...+...+.|.++-.++.+
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~----~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD----NLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc----hhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 111234456788888888 9999999999887665322 234778899999999999998777655
No 271
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.13 E-value=2.9 Score=38.02 Aligned_cols=112 Identities=17% Similarity=0.154 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHc--
Q psy10061 57 DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAAT-LFLEQ-- 133 (325)
Q Consensus 57 ~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~-~~~~~-- 133 (325)
..-+.++.+.+.+.++.|+++-|..++.++.......+.. ...+...-+.+....|+..+|+...+..+. .....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~ 220 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID 220 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc
Confidence 4555666777777777777777777776655543222211 223444445666677888888887777766 22211
Q ss_pred -------------------------CCHHHHHHHHHHHHHHHhcc------C-HHHHHHHHHHHHHHHh
Q psy10061 134 -------------------------GNREAASTVLEKGAKSLEEL------K-SDAALTLYSRAADVAH 170 (325)
Q Consensus 134 -------------------------g~~~~aa~~l~~lg~~~~~~------~-~~~A~~~y~~Al~~~~ 170 (325)
.+....+.++..+|...... . .+.++..|++|+.+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 289 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP 289 (352)
T ss_pred cccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh
Confidence 12344556666666666554 2 6667777777766544
No 272
>KOG3024|consensus
Probab=94.07 E-value=3.9 Score=36.06 Aligned_cols=205 Identities=18% Similarity=0.102 Sum_probs=128.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 53 KPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLE 132 (325)
Q Consensus 53 ~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~ 132 (325)
.+++-+|...|.-+..-|...+.++.|++..-..+.++-+.+....++.....+.++|.+. .........
T Consensus 19 ~~d~Yeahqm~RTl~fR~~~~K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka-~~ad~~~~~--------- 88 (312)
T KOG3024|consen 19 LGDYYEAHQMYRTLVFRYTRQKAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKA-EVADSLLKV--------- 88 (312)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHH-HhhHhHHHH---------
Confidence 3788889999999999898888999999988888888777766666677666666666551 111111111
Q ss_pred cCCHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---
Q psy10061 133 QGNREAASTVLEKGAKSLEELK--SDAALTLYSRAADVAHGE-DNYKQAAEYISRAARMCVRVKEFDKAADLIRQEI--- 206 (325)
Q Consensus 133 ~g~~~~aa~~l~~lg~~~~~~~--~~~A~~~y~~Al~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--- 206 (325)
.+++.+....+ -.+-..+.+.++++..+- +-..+-...+.-+|..+..-+++.+|..+|-.+-
T Consensus 89 -----------anl~~ll~e~~~~eper~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll~~d~s 157 (312)
T KOG3024|consen 89 -----------ANLAELLGEADPSEPERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWTEDNVEEARRHFLLSEDGS 157 (312)
T ss_pred -----------HHHHHHHhhcCCCccHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhhcCChH
Confidence 23333333332 223345556667766653 2222334566778888888888888887774321
Q ss_pred -------HHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-c---------------------ccCCChHHHHH
Q psy10061 207 -------GYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-G---------------------NCCEAPEVQTL 257 (325)
Q Consensus 207 -------~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~---------------------~~~~~~e~~~l 257 (325)
+.....+........+.+...-|+...|...|.+.+..+ . -+.....-..+
T Consensus 158 ~~a~~ll~y~~~r~f~~e~d~f~~~aVlq~L~len~~~A~~s~t~yt~~f~~k~~p~~e~~~~~~~k~~~~~~~pllNFl 237 (312)
T KOG3024|consen 158 KFAYMLLEYSMSRGFKSEPDVFYVQAVLQYLCLENDSSAARSFTTYTSMFNMKDFPMDEIKHKAGTKNPFPFEYPLLNFL 237 (312)
T ss_pred HHHHHHHHHHhhcccccCchHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccccchhhcccccccCCCccccchHHHH
Confidence 111111111112234556666777788888888777764 1 11233445677
Q ss_pred HHHHHHHhcCCHHHHHHHhcC
Q psy10061 258 EKLLQAFDEEDPEGARQALND 278 (325)
Q Consensus 258 ~~L~~a~~~gd~~~~~~~~~~ 278 (325)
.-|...++.+|...+.....+
T Consensus 238 ~~Ll~t~~~k~~~~f~~L~~~ 258 (312)
T KOG3024|consen 238 HFLLETIQRKDLPLFLMLRVK 258 (312)
T ss_pred HHHHHHHhccccHHHHHHHHH
Confidence 788899999999999998876
No 273
>KOG3785|consensus
Probab=94.06 E-value=0.53 Score=42.75 Aligned_cols=89 Identities=11% Similarity=0.138 Sum_probs=65.1
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q psy10061 146 GAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVAL 225 (325)
Q Consensus 146 lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 225 (325)
+-..+...+|.-|+.+++-.+.+-+ .....+-.++|.++..+|+|++|+..|+-... ..+. .+....++
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-----EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~----~~~~--~~el~vnL 97 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-----EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN----KDDA--PAELGVNL 97 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-----hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc----cCCC--CcccchhH
Confidence 4455556668888887766653322 22345667899999999999999999876544 1222 23467889
Q ss_pred HHHHHhcCCHHHHHHHHHhh
Q psy10061 226 VLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 226 g~~~~~~gd~~~A~~~~~~~ 245 (325)
+.|++..|.|.+|...-.++
T Consensus 98 Acc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 98 ACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999988876
No 274
>KOG2610|consensus
Probab=94.00 E-value=3.6 Score=37.33 Aligned_cols=129 Identities=14% Similarity=-0.009 Sum_probs=84.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061 68 TCFKGAKSFQQCKEYLLKAANCYETN-KSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKG 146 (325)
Q Consensus 68 ~~y~~~g~~~~A~~~~~~a~~~~~~~-~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~l 146 (325)
.++...|+.......+++.+ .+. .+..--..+.--.+....+.|.|++|.+.-+++++|-+- + .-+.+-.
T Consensus 145 ~a~fy~G~~~~~k~ai~kIi---p~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~----D--~Wa~Ha~ 215 (491)
T KOG2610|consen 145 DAHFYNGNQIGKKNAIEKII---PKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRF----D--CWASHAK 215 (491)
T ss_pred hHHHhccchhhhhhHHHHhc---cccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCc----c--hHHHHHH
Confidence 34556677666666655533 221 122212223333456677889999999999998876332 1 2234566
Q ss_pred HHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061 147 AKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIG 207 (325)
Q Consensus 147 g~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 207 (325)
+.+++..+ +.++.++..+.-+..+.. ...++..|-..+..|++.+.|+.|++.|.+-+-
T Consensus 216 aHVlem~~r~Keg~eFM~~ted~Wr~s--~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 216 AHVLEMNGRHKEGKEFMYKTEDDWRQS--WMLASHNYWHTALFHIEGAEYEKALEIYDREIW 275 (491)
T ss_pred HHHHHhcchhhhHHHHHHhcccchhhh--hHHHhhhhHHHHHhhhcccchhHHHHHHHHHHH
Confidence 77888777 999999888776665522 233445667888999999999999999988654
No 275
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.97 E-value=0.14 Score=30.60 Aligned_cols=32 Identities=9% Similarity=-0.041 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 101 KHLEQAIMMCKELNDLTDVENLAKQAATLFLE 132 (325)
Q Consensus 101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~ 132 (325)
.+|..+|.+-...++|++|+.-|++++++.++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666665544
No 276
>KOG4507|consensus
Probab=93.94 E-value=0.11 Score=49.79 Aligned_cols=89 Identities=17% Similarity=0.100 Sum_probs=70.3
Q ss_pred HHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Q psy10061 146 GAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVA 224 (325)
Q Consensus 146 lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 224 (325)
.|.++...+ ...|+.|++.|+.......+ -.+.+++.+++..|-...|..++.++|.+. ....-.++.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~-----v~~v~la~~~~~~~~~~da~~~l~q~l~~~------~sepl~~~~ 681 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQD-----VPLVNLANLLIHYGLHLDATKLLLQALAIN------SSEPLTFLS 681 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhc-----ccHHHHHHHHHHhhhhccHHHHHHHHHhhc------ccCchHHHh
Confidence 344444455 89999999999876655433 356789999999998889999999998875 223346778
Q ss_pred HHHHHHhcCCHHHHHHHHHhh
Q psy10061 225 LVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 225 lg~~~~~~gd~~~A~~~~~~~ 245 (325)
+|.+++...|..+|++.|+++
T Consensus 682 ~g~~~l~l~~i~~a~~~~~~a 702 (886)
T KOG4507|consen 682 LGNAYLALKNISGALEAFRQA 702 (886)
T ss_pred cchhHHHHhhhHHHHHHHHHH
Confidence 999999999999999999996
No 277
>KOG4322|consensus
Probab=93.93 E-value=3.9 Score=38.18 Aligned_cols=181 Identities=13% Similarity=-0.035 Sum_probs=98.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 53 KPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLE 132 (325)
Q Consensus 53 ~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~ 132 (325)
+.++..-++..-+-+.++...+++..|.....+..--..+..+....+.++..++.++.+-+....+.-+.-.+.....+
T Consensus 266 g~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~se 345 (482)
T KOG4322|consen 266 GGDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSE 345 (482)
T ss_pred cchHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence 46666666666666666666677777777666655444455556666677777777777666666666665555555444
Q ss_pred cCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHH-------HHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10061 133 QGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAA-------EYISRAARMCVRVKEFDKAADLIRQ 204 (325)
Q Consensus 133 ~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~ 204 (325)
-...-..+..--+++..+-..| +.+|+..+..|+....-.|-....+ .|+...+..+ ...+.+.+.+++++
T Consensus 346 y~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~~ 424 (482)
T KOG4322|consen 346 YSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYLDL 424 (482)
T ss_pred hccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHHHH
Confidence 4443344444445555555556 7777777777776554333211111 1221111111 44556666666666
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHhcCC
Q psy10061 205 EIGYHQESEHLLAIGRLAVALVLVQLARGD 234 (325)
Q Consensus 205 al~~~~~~~~~~~~~~~~~~lg~~~~~~gd 234 (325)
+-.++.+++-......+.+-.+..|-..||
T Consensus 425 A~~~f~kL~~he~ildv~yf~A~~yn~lGd 454 (482)
T KOG4322|consen 425 AQSIFYKLGCHEKILDVTYFSAYQYNHLGD 454 (482)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHhhcC
Confidence 666665554322222222334444444444
No 278
>KOG4322|consensus
Probab=93.90 E-value=2.6 Score=39.26 Aligned_cols=148 Identities=12% Similarity=-0.038 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Q psy10061 60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAA 139 (325)
Q Consensus 60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~a 139 (325)
+...--.+.++...+.......+...+.....+.......+..-.+++..+.-.|.+..|......++......|-...-
T Consensus 313 ~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~dr 392 (482)
T KOG4322|consen 313 HSVLLTIAEARESGDTACLNLPLALMFEFKRSEYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDR 392 (482)
T ss_pred HHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhc
Confidence 44444455666666666667777667666666666667777777888888888999999999999999888877765544
Q ss_pred HHHHHHHHHH-------HhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHH
Q psy10061 140 STVLEKGAKS-------LEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFD---KAADLIRQEIG 207 (325)
Q Consensus 140 a~~l~~lg~~-------~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~---~A~~~~~~al~ 207 (325)
++++.-.+++ +.....+.+.+++++|-+++.+.+-...+.++..-.+..|-..|+.+ ++...|++...
T Consensus 393 ara~fvfanC~lA~a~s~~~e~ld~~~~~L~~A~~~f~kL~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~ 470 (482)
T KOG4322|consen 393 ARAIFVFANCTLAFALSCANESLDGFPRYLDLAQSIFYKLGCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR 470 (482)
T ss_pred ceeEEEEEeeeecchhhhhhhhHHhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 4433322222 22223889999999999999999888888888888999999998766 45555666544
No 279
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.77 E-value=0.17 Score=31.09 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 102 HLEQAIMMCKELNDLTDVENLAKQAATL 129 (325)
Q Consensus 102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~ 129 (325)
++..++.+|..+|++++|+++|++++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566777777777777777777777765
No 280
>KOG2796|consensus
Probab=93.69 E-value=4 Score=35.84 Aligned_cols=131 Identities=10% Similarity=0.074 Sum_probs=98.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061 68 TCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGA 147 (325)
Q Consensus 68 ~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg 147 (325)
.++.-.|.|.-+.+.+.+..+- ++...-.....+|.+-...||...|..+++..-..-.+.........+..+.+
T Consensus 185 ~~llG~kEy~iS~d~~~~vi~~-----~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 185 NCLLGMKEYVLSVDAYHSVIKY-----YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHhcchhhhhhHHHHHHHHHh-----CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 4445566777777777776652 23333456778899999999999999999877766666666777788899999
Q ss_pred HHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 148 KSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH 209 (325)
Q Consensus 148 ~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 209 (325)
.+|-..+ +..|...|.+++..-.+ . +.+.++-+.+..-+|+..+|++..+.++.+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-----~-~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-----N-AVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-----c-hhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9998876 99999999887653221 1 3456778888888999999999998887654
No 281
>KOG0545|consensus
Probab=93.61 E-value=4.5 Score=35.13 Aligned_cols=109 Identities=10% Similarity=0.042 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhc
Q psy10061 98 HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ------GNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHG 171 (325)
Q Consensus 98 ~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~------g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~ 171 (325)
.+..++..-|+-+.++|+|.+|...|+.|+...+.+ |++.- .. +-+
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW-----~e----------------------Ldk- 227 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEW-----LE----------------------LDK- 227 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHH-----HH----------------------HHH-
Confidence 355566666777777788888888887777665443 22210 00 000
Q ss_pred CCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 172 EDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 172 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
...-.+.|...++...|+|-+++++..+.|...+ ..-.+|+..+.++...=+..+|..-|...
T Consensus 228 -----~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~------~nvKA~frRakAhaa~Wn~~eA~~D~~~v 290 (329)
T KOG0545|consen 228 -----MITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP------GNVKAYFRRAKAHAAVWNEAEAKADLQKV 290 (329)
T ss_pred -----hhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC------chHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 0012445666666666666666666666555321 11235566666666666666666666665
No 282
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.58 E-value=1.1 Score=36.91 Aligned_cols=85 Identities=15% Similarity=0.045 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHH
Q psy10061 155 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEF---DKAADLIRQEIGYHQESE-HLLAIGRLAVALVLVQL 230 (325)
Q Consensus 155 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~---~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~~~ 230 (325)
++.|.+.++.....-.. -.+.+.+.|.++..+-++ .++.++++.++..+++.- -......++.++|.+|.
T Consensus 7 FE~ark~aea~y~~nP~------DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~t 80 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL------DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH------hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 45555555555443222 146778888877776444 567777777777766531 11223356778888886
Q ss_pred hc----CCHHHHHHHHHhh
Q psy10061 231 AR----GDTVAAEKAFKEW 245 (325)
Q Consensus 231 ~~----gd~~~A~~~~~~~ 245 (325)
.. .|..+|.++|+++
T Consensus 81 s~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 81 SLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHH---HHHHHHHHHHH
T ss_pred HHHhhcCChHHHHHHHHHH
Confidence 54 5566666777665
No 283
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.55 E-value=0.13 Score=27.89 Aligned_cols=29 Identities=10% Similarity=0.312 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQEIGY 208 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 208 (325)
.++..+|.++..+|++++|+..|++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35678888889999999999988888764
No 284
>KOG0545|consensus
Probab=93.55 E-value=1.3 Score=38.37 Aligned_cols=101 Identities=12% Similarity=0.086 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc------cHH------HHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10061 176 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE------HLL------AIGRLAVALVLVQLARGDTVAAEKAFK 243 (325)
Q Consensus 176 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~------~~~~~~~~lg~~~~~~gd~~~A~~~~~ 243 (325)
..+..+++.-|+-+++.|+|.+|...|+.|+...+.+. ++. .....++|...|++..|||-++++...
T Consensus 175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s 254 (329)
T KOG0545|consen 175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS 254 (329)
T ss_pred hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 34456888999999999999999999999998776532 221 123467899999999999999999988
Q ss_pred hh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 244 EW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 244 ~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
+. ....+. .+++..-+.|+ ...++++++.-+.+
T Consensus 255 eiL~~~~~n--vKA~frRakAhaa~Wn~~eA~~D~~~ 289 (329)
T KOG0545|consen 255 EILRHHPGN--VKAYFRRAKAHAAVWNEAEAKADLQK 289 (329)
T ss_pred HHHhcCCch--HHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 87 333332 44565666676 46677776666554
No 285
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=93.45 E-value=3.2 Score=44.78 Aligned_cols=203 Identities=16% Similarity=0.056 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-----c-------------------
Q psy10061 97 YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLE-----E------------------- 152 (325)
Q Consensus 97 ~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~-----~------------------- 152 (325)
...++..-.+|++|...|++.+|+..|..|+++.+..+|+--.|.++.-++.+.. .
T Consensus 239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~ 318 (1185)
T PF08626_consen 239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSST 318 (1185)
T ss_pred hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCcc
Confidence 3567778888999999999999999999999999999998877777666543210 0
Q ss_pred --------------------------------c-------C-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHc
Q psy10061 153 --------------------------------L-------K-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRV 192 (325)
Q Consensus 153 --------------------------------~-------~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~ 192 (325)
. . +++++.+|.++.....+---..-..++..+++.++...
T Consensus 319 ~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~ 398 (1185)
T PF08626_consen 319 SSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQ 398 (1185)
T ss_pred CccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHh
Confidence 0 1 45555555555433222222233357778888888887
Q ss_pred C--------------------CHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-----c-
Q psy10061 193 K--------------------EFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-----G- 246 (325)
Q Consensus 193 g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-----~- 246 (325)
. .-.++.++..+++.+....-....+...+..++.+|-..|=..+..=+++.. +
T Consensus 399 ~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~~~ 478 (1185)
T PF08626_consen 399 HLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLVPG 478 (1185)
T ss_pred hcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhccc
Confidence 7 7788888888888764432233344456666666666655544433333321 0
Q ss_pred -----------------c---------c--CCC------h---HHHHHHHHHHHH-hcCCHHHHHHHhcC---hhhhccc
Q psy10061 247 -----------------N---------C--CEA------P---EVQTLEKLLQAF-DEEDPEGARQALND---PFIKHMD 285 (325)
Q Consensus 247 -----------------~---------~--~~~------~---e~~~l~~L~~a~-~~gd~~~~~~~~~~---~~~~~l~ 285 (325)
. + ... + +-.+|..++.+. ..+|...+..+..- .....|+
T Consensus 479 l~~~~~s~~~lL~~~~~~Ygi~~~~~~~~~~~~~~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~~~~~LL~~~~~~Ls 558 (1185)
T PF08626_consen 479 LIHWHQSYRSLLEELCKGYGISLDPESSSEDSSKGSQSNWPSLQIDVLKECINIAEALGDFAGVLRFSSLLLRTYSPLLS 558 (1185)
T ss_pred cCCcchHHHHHHHHHhccCcccCCccccccccccccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhCC
Confidence 0 0 000 1 224566666655 48888887776553 3344453
Q ss_pred -HHHHHHhhcCCCCC
Q psy10061 286 -VEYSRLARDLPLPS 299 (325)
Q Consensus 286 -~~~~~~~~~l~~~~ 299 (325)
.+..+|...+..+.
T Consensus 559 ~~EQ~~L~~~l~~~~ 573 (1185)
T PF08626_consen 559 PDEQIRLANNLQRTS 573 (1185)
T ss_pred HHHHHHHHHHHHHHh
Confidence 45666666666543
No 286
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.30 E-value=0.087 Score=30.58 Aligned_cols=32 Identities=16% Similarity=0.099 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10061 83 LLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVE 120 (325)
Q Consensus 83 ~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~ 120 (325)
|++++++.... +.++.++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n------~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNN------AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCC------HHHHHHHHHHHHHCcCHHhhc
Confidence 55666665432 468999999999999999886
No 287
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.12 E-value=3.4 Score=36.75 Aligned_cols=128 Identities=12% Similarity=0.093 Sum_probs=84.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhccC-HHHHHHHHHHHHHHHhcCCChhhHHH
Q psy10061 103 LEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKS-LEELK-SDAALTLYSRAADVAHGEDNYKQAAE 180 (325)
Q Consensus 103 ~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~-~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~ 180 (325)
|....+..++.+..+.|...+.+|. +.+.. .-.+|...|.+ |...+ .+.|...|+.++..+.... .
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~----~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~------~ 71 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRAR----KDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP------D 71 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----CCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H------H
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHH----cCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH------H
Confidence 4445555566666778888888885 22221 12357777777 33234 7779999999999887642 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 181 YISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.+......++..++.+.|..+|++++.. +........+|......-...||.+......+++
T Consensus 72 ~~~~Y~~~l~~~~d~~~aR~lfer~i~~---l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~ 133 (280)
T PF05843_consen 72 FWLEYLDFLIKLNDINNARALFERAISS---LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRA 133 (280)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHCCT---SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5556667788899999999999998864 2222212345566666667778888888888775
No 288
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=92.78 E-value=1.3 Score=33.33 Aligned_cols=95 Identities=16% Similarity=0.110 Sum_probs=51.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHhccC-----HHHHHHHHHHHHHHHhcCCChhh
Q psy10061 107 IMMCKELNDLTDVENLAKQAATLFLEQGNR----EAASTVLEKGAKSLEELK-----SDAALTLYSRAADVAHGEDNYKQ 177 (325)
Q Consensus 107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~----~~aa~~l~~lg~~~~~~~-----~~~A~~~y~~Al~~~~~~~~~~~ 177 (325)
+.-+...|++-+|++..+..+....+..+. ..++..+..++...+..+ .--++++|.++..+.+.
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~------ 76 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD------ 76 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh------
Confidence 344556688888888888877665555432 233344444444444332 23455555555544332
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061 178 AAEYISRAARMCVRVKEFDKAADLIRQEIG 207 (325)
Q Consensus 178 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 207 (325)
.+..+..+|.-+-...-|.+++.-.+++|.
T Consensus 77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 77 SAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 244555565555445556666665555554
No 289
>KOG4814|consensus
Probab=92.67 E-value=1 Score=43.93 Aligned_cols=97 Identities=12% Similarity=0.103 Sum_probs=64.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHH
Q psy10061 182 ISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLL 261 (325)
Q Consensus 182 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~ 261 (325)
+-+-+.-+.+..+|..++++|...+..+..-.....-+....++..||+...+.++|.++++++..|++..-...+.-+.
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 34445567788999999999999987655332111225677899999999999999999999996665322211122222
Q ss_pred HHHhcCCHHHHHHHhcC
Q psy10061 262 QAFDEEDPEGARQALND 278 (325)
Q Consensus 262 ~a~~~gd~~~~~~~~~~ 278 (325)
.+...|..+++..++..
T Consensus 437 ~~~~E~~Se~AL~~~~~ 453 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQK 453 (872)
T ss_pred HHHHhcchHHHHHHHHH
Confidence 23345666666666554
No 290
>KOG0686|consensus
Probab=92.52 E-value=9 Score=35.65 Aligned_cols=166 Identities=15% Similarity=0.148 Sum_probs=109.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061 127 ATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQE 205 (325)
Q Consensus 127 ~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 205 (325)
++.|+..+-.+..-..+..+|.-|..-| .+.|+++|-++-+.....+. .+..+.++-.|-+.+|+|..-..+-.++
T Consensus 137 Lk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh---vInm~ln~i~VSI~~~nw~hv~sy~~~A 213 (466)
T KOG0686|consen 137 LKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH---VINMCLNLILVSIYMGNWGHVLSYISKA 213 (466)
T ss_pred HHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH---HHHHHHHHHHHHHhhcchhhhhhHHHHH
Confidence 3445544444555667899999999887 99999999998887766533 3556778888899999999888887777
Q ss_pred HHHHHHccc--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh--cccC----CChHHHHHHHHHHHHhcCCHHHHH-HHh
Q psy10061 206 IGYHQESEH--LLAIGRLAVALVLVQLARGDTVAAEKAFKEW--GNCC----EAPEVQTLEKLLQAFDEEDPEGAR-QAL 276 (325)
Q Consensus 206 l~~~~~~~~--~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~--~~~~----~~~e~~~l~~L~~a~~~gd~~~~~-~~~ 276 (325)
........+ ......+.-..|++.+..+.|..|..+|-.. +..+ -+...-.+.....|+..-|..... ...
T Consensus 214 ~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi 293 (466)
T KOG0686|consen 214 ESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVI 293 (466)
T ss_pred HhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHH
Confidence 654211000 0011122334688888888999999999886 2211 122334556666777777777776 444
Q ss_pred cC---hhhhcccHHHHHHhhcC
Q psy10061 277 ND---PFIKHMDVEYSRLARDL 295 (325)
Q Consensus 277 ~~---~~~~~l~~~~~~~~~~l 295 (325)
+. ..|-.+.+.+.+|+.+.
T Consensus 294 ~n~~Fk~flel~Pqlr~il~~f 315 (466)
T KOG0686|consen 294 KNESFKLFLELEPQLREILFKF 315 (466)
T ss_pred cchhhhhHHhcChHHHHHHHHH
Confidence 44 45666777777766554
No 291
>KOG1915|consensus
Probab=92.33 E-value=11 Score=36.03 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 181 YISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
++...+..-+++.+.+.|...+-.|+..++. ..++-....+-+..++++.....|+++
T Consensus 406 iWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-------~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 406 IWLMYAQFEIRQLNLTGARKILGNAIGKCPK-------DKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhccCCc-------hhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4444444444555555555555554444322 122233334445556666666666664
No 292
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=91.85 E-value=0.3 Score=26.29 Aligned_cols=28 Identities=18% Similarity=0.083 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 102 HLEQAIMMCKELNDLTDVENLAKQAATL 129 (325)
Q Consensus 102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~ 129 (325)
++.++|.+|...+++++|+.++++++.+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 5667777777778888888777777654
No 293
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.61 E-value=9.4 Score=33.90 Aligned_cols=88 Identities=10% Similarity=0.042 Sum_probs=67.2
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhc---C----C-hHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAK-SFQQCKEYLLKAANCYETN---K----S-AYH 98 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g-~~~~A~~~~~~a~~~~~~~---~----~-~~~ 98 (325)
.|+++.|.-++.|+....... . ......-++.+...|.-....+ ++++|...+.+|.++.... + + ..-
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~-~--~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSL-D--PDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcC-C--cHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 368999999999998877311 0 2445666788888898888888 9999999999999997541 1 1 244
Q ss_pred HHHHHHHHHHHHHHcCCHHH
Q psy10061 99 AAKHLEQAIMMCKELNDLTD 118 (325)
Q Consensus 99 aa~~~~~~~~~y~~~g~~~e 118 (325)
...++..++.+|...+.++.
T Consensus 83 r~~iL~~La~~~l~~~~~~~ 102 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYES 102 (278)
T ss_pred HHHHHHHHHHHHHcCCChHH
Confidence 67788889999998887653
No 294
>KOG1538|consensus
Probab=91.55 E-value=14 Score=36.65 Aligned_cols=132 Identities=13% Similarity=0.043 Sum_probs=60.6
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Q psy10061 110 CKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMC 189 (325)
Q Consensus 110 y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~ 189 (325)
|...|..++--.+.++-.+-.+....+..||+.+...|..-.....----.+..-++++.++.+.. ..+.+..++..+
T Consensus 680 ~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~--ere~l~~~a~yl 757 (1081)
T KOG1538|consen 680 FLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKA--EREPLLLCATYL 757 (1081)
T ss_pred HhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchh--hhhHHHHHHHHH
Confidence 444455555555555555555566666666665554443221110000001122333444433221 123455555555
Q ss_pred HHcCCHHHHHHHHHHHHH-------------------HHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 190 VRVKEFDKAADLIRQEIG-------------------YHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 190 ~~~g~~~~A~~~~~~al~-------------------~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..+..+.-|.+.|++.-+ ++.+.. .-....|+--|.-+...+++++|.+.|-++
T Consensus 758 k~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~hP--e~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 758 KKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEKHP--EFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hhccccchHHHHHHHhccHHHHhhheeecccchHhHhhhhhCc--cccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 555555555555544322 222211 112233445555566667777777777666
No 295
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.35 E-value=0.84 Score=38.23 Aligned_cols=58 Identities=17% Similarity=0.320 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHH
Q psy10061 140 STVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAA 199 (325)
Q Consensus 140 a~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 199 (325)
+.....+|.+|...+.++++.+|.+++++.....+.. .+++..|+.+|.++|+++.|-
T Consensus 141 ~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n--~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 141 AELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFN--PEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHHhcchhhhh
Confidence 5677788888988889999999999999887764332 467888999999999988874
No 296
>KOG4521|consensus
Probab=91.35 E-value=22 Score=37.63 Aligned_cols=234 Identities=12% Similarity=0.112 Sum_probs=128.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH------HcCC----HHHHHHHHHHHHHHHHHcCCH
Q psy10061 67 ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCK------ELND----LTDVENLAKQAATLFLEQGNR 136 (325)
Q Consensus 67 ~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~------~~g~----~~eA~~~~~~A~~~~~~~g~~ 136 (325)
|.+|...|...+|+.+|.+|..-.-+- +++..+..-.. ..|+ ...|+.||.+++.++.+.+-.
T Consensus 927 g~~yl~tge~~kAl~cF~~a~Sg~ge~-------~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~ 999 (1480)
T KOG4521|consen 927 GIAYLGTGEPVKALNCFQSALSGFGEG-------NALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHA 999 (1480)
T ss_pred heeeecCCchHHHHHHHHHHhhccccH-------HHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccH
Confidence 445667788888888888876544321 12333221100 1122 234678888888888888777
Q ss_pred HHHHHHHHHHHHHHhcc------------CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHH---
Q psy10061 137 EAASTVLEKGAKSLEEL------------KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADL--- 201 (325)
Q Consensus 137 ~~aa~~l~~lg~~~~~~------------~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~--- 201 (325)
+.+...-..+-...... ++.--+.++-+|....-+..+......|++++-.++.+.|+++.-.++
T Consensus 1000 E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l~~L~~fpfi 1079 (1480)
T KOG4521|consen 1000 EEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGELEALATFPFI 1079 (1480)
T ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchHHHhhCCcc
Confidence 66555433332222221 133344556677766666666666778999999999999988753331
Q ss_pred --HHHHHH-HHHHc--ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHH--HHHHHHHHHHhcCCHHHHH
Q psy10061 202 --IRQEIG-YHQES--EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEV--QTLEKLLQAFDEEDPEGAR 273 (325)
Q Consensus 202 --~~~al~-~~~~~--~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~--~~l~~L~~a~~~gd~~~~~ 273 (325)
-++... +.... ..+....++|.-+=.-|...+++.+|-.+.-++ ..+.....+ .+|.+-++. ..
T Consensus 1080 gl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se~~~~~~~Lekr~nc--------ll 1151 (1480)
T KOG4521|consen 1080 GLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESETCMTPELLEKRRNC--------LL 1151 (1480)
T ss_pred chHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcccccCCHHHHHHhhhH--------HH
Confidence 122222 11111 123334445554555567889998887776665 333211100 123222222 22
Q ss_pred HHhcChhhhcccHHHHHHhhcCCCCCCCCCCCcccccccccCCCcCC
Q psy10061 274 QALNDPFIKHMDVEYSRLARDLPLPSATCATPRPASIRQNAAPSYVS 320 (325)
Q Consensus 274 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (325)
.+++. ..-++++...|+. ++||...-.|- ++.+++--|-++|
T Consensus 1152 aaLNc--l~Lv~p~yawi~~--Pvpgd~~d~pi-~sd~r~eegkl~s 1193 (1480)
T KOG4521|consen 1152 AALNC--LSLVEPDYAWIIY--PVPGDDEDEPI-ESDSRGEEGKLPS 1193 (1480)
T ss_pred HHHHH--HHhcCCCcceeec--CCCCccccccc-cCcCcCCCCCCCC
Confidence 23333 2233444444443 89999888884 6666666666666
No 297
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.30 E-value=0.33 Score=26.14 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q psy10061 222 AVALVLVQLARGDTVAAEKAFK 243 (325)
Q Consensus 222 ~~~lg~~~~~~gd~~~A~~~~~ 243 (325)
...++.++..+||+++|...++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3455666666666666665554
No 298
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=90.79 E-value=14 Score=34.35 Aligned_cols=167 Identities=11% Similarity=0.070 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHcCCHH
Q psy10061 61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKE---LNDLTDVENLAKQAATLFLEQGNRE 137 (325)
Q Consensus 61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~---~g~~~eA~~~~~~A~~~~~~~g~~~ 137 (325)
+.-..+...|+..++|+.-+......-.+ ... +.......-...+.+..+ .|+.++|+.....++.- ..+
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~-p~~-~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~--~~~--- 214 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEAL-PTC-DVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES--DEN--- 214 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhcc-Ccc-chhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc--cCC---
Confidence 33445556677777776655544332222 000 111122233444555556 78999999888876322 111
Q ss_pred HHHHHHHHHHHHHhcc---------C-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Q psy10061 138 AASTVLEKGAKSLEEL---------K-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEI- 206 (325)
Q Consensus 138 ~aa~~l~~lg~~~~~~---------~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al- 206 (325)
....++.-+|.+|... . .++|+.+|.++.++-+ +. ..-.|++.++...|.-.+...-.++..
T Consensus 215 ~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~---~~----Y~GIN~AtLL~~~g~~~~~~~el~~i~~ 287 (374)
T PF13281_consen 215 PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP---DY----YSGINAATLLMLAGHDFETSEELRKIGV 287 (374)
T ss_pred CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc---cc----cchHHHHHHHHHcCCcccchHHHHHHHH
Confidence 2233666777776543 1 7999999999977652 21 122356666666665433332223322
Q ss_pred HH---HHH------cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 207 GY---HQE------SEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 207 ~~---~~~------~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.+ ..+ ..+++..+ .+..+.+..||+++|..+++++
T Consensus 288 ~l~~llg~kg~~~~~~dYWd~A----Tl~Ea~vL~~d~~ka~~a~e~~ 331 (374)
T PF13281_consen 288 KLSSLLGRKGSLEKMQDYWDVA----TLLEASVLAGDYEKAIQAAEKA 331 (374)
T ss_pred HHHHHHHhhccccccccHHHHH----HHHHHHHHcCCHHHHHHHHHHH
Confidence 11 111 12344443 3566777799999999999996
No 299
>KOG1920|consensus
Probab=90.75 E-value=16 Score=38.52 Aligned_cols=40 Identities=10% Similarity=0.164 Sum_probs=24.0
Q ss_pred ccchhhhhhHHHHHHhhc---hhccccc--cccHHHHHHHHHHHH
Q psy10061 3 SDRKKEEGMEYVKSAEKH---SLSTMTS--DRKKEEGMEYVKSAE 42 (325)
Q Consensus 3 ~~~~~~~~~~~~~~ae~~---~~~~~~~--~~~~~eA~~l~~~A~ 42 (325)
|+++|.|=.+++.+=+|+ ...|-.. -++|++|+.++.++.
T Consensus 863 SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~ 907 (1265)
T KOG1920|consen 863 SQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECG 907 (1265)
T ss_pred hccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcC
Confidence 677888888887776632 2233221 146777777665544
No 300
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=90.62 E-value=15 Score=34.64 Aligned_cols=171 Identities=13% Similarity=-0.039 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHc
Q psy10061 61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDL-------TDVENLAKQAATLFLEQ 133 (325)
Q Consensus 61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~-------~eA~~~~~~A~~~~~~~ 133 (325)
....++|+++..+++|+-|...|..+..=+..-..+.-.|.+.+-++.+..-.+.. ++...+++.|+..|...
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 45567999999999999999999988876665555666777888888777766643 36778899999999883
Q ss_pred -----CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHHH--HHcCCHHHHHHHHH
Q psy10061 134 -----GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAH--GEDNYKQAAEYISRAARMC--VRVKEFDKAADLIR 203 (325)
Q Consensus 134 -----g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~--~~~~~~~~~~~~~~lg~~~--~~~g~~~~A~~~~~ 203 (325)
....-+.++....+.++...+ +.++...+-+.....- ..+ ..+.+-.+.+++.+| ........-..-++
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~-~~~~alllE~~a~~~~~~~~~~~~~~~~r~R 367 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLR-PFGSALLLEQAAYCYASLRSNRPSPGLTRFR 367 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhh-hHhhHHHHHHHHHhhcccccCCCCccchhhH
Confidence 223466667777777776665 6666665555554321 111 111445667777777 22110000000000
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 204 QEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 204 ~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
--+--+.-.|.-|...|....|..+|.++
T Consensus 368 -------------K~af~~vLAg~~~~~~~~~~~a~rcy~~a 396 (414)
T PF12739_consen 368 -------------KYAFHMVLAGHRYSKAGQKKHALRCYKQA 396 (414)
T ss_pred -------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 01111233566778889999999999987
No 301
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=90.42 E-value=2.9 Score=37.23 Aligned_cols=134 Identities=10% Similarity=0.101 Sum_probs=90.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy10061 63 YSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKE-LNDLTDVENLAKQAATLFLEQGNREAAST 141 (325)
Q Consensus 63 y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~-~g~~~eA~~~~~~A~~~~~~~g~~~~aa~ 141 (325)
|.+.....+..+..+.|...|.+|. +.+. ..-.+|...|.+... .++...|...|+.++..+....++
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~----~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~----- 72 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRAR----KDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDF----- 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----CCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHH-----
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHH----cCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHH-----
Confidence 4455556666666888999998885 2211 122467777888555 567777999999999887665543
Q ss_pred HHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 142 VLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 142 ~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 211 (325)
+..-...+...+ .+.+...|++++... ........++......=.+.|+.+....+.+++.+.+.+
T Consensus 73 -~~~Y~~~l~~~~d~~~aR~lfer~i~~l---~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 73 -WLEYLDFLIKLNDINNARALFERAISSL---PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp -HHHHHHHHHHTT-HHHHHHHHHHHCCTS---SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred -HHHHHHHHHHhCcHHHHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 333334444555 899999999998652 222223457888888888889999999999988887655
No 302
>KOG1550|consensus
Probab=89.63 E-value=15 Score=36.13 Aligned_cols=119 Identities=18% Similarity=0.071 Sum_probs=76.8
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061 73 AKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELN-----DLTDVENLAKQAATLFLEQGNREAASTVLEKGA 147 (325)
Q Consensus 73 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g-----~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg 147 (325)
.+|.+.|..+|..++.-+.+.- ..+-..+...+|.+|.+-. ++..|..+|.++.+ .|.+. +...+|
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a-~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~----~g~~~----a~~~lg 332 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAA-TKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE----LGNPD----AQYLLG 332 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHH-hhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh----cCCch----HHHHHH
Confidence 3578888888888877322110 0111235677888887732 56677777777753 35544 456777
Q ss_pred HHHhcc----CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHH
Q psy10061 148 KSLEEL----KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRV----KEFDKAADLIRQEIGY 208 (325)
Q Consensus 148 ~~~~~~----~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~ 208 (325)
.++... ++..|.++|..|... |. ..+..+++.+|..- .+...|+.++.++.+.
T Consensus 333 ~~~~~g~~~~d~~~A~~yy~~Aa~~----G~----~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 333 VLYETGTKERDYRRAFEYYSLAAKA----GH----ILAIYRLALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred HHHHcCCccccHHHHHHHHHHHHHc----CC----hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 777643 377888888888642 32 34666777776543 4888899999988764
No 303
>KOG0687|consensus
Probab=89.45 E-value=16 Score=33.08 Aligned_cols=112 Identities=12% Similarity=0.064 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q psy10061 136 REAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH 214 (325)
Q Consensus 136 ~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 214 (325)
-....++..+.+..|-+.+ -+.|.+.+++..+-.-..|......-+..++|.+|....- --+..+++-.+.++-|+
T Consensus 100 E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~l---V~~~iekak~liE~GgD 176 (393)
T KOG0687|consen 100 ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDL---VTESIEKAKSLIEEGGD 176 (393)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHH---HHHHHHHHHHHHHhCCC
Confidence 3455677888888888776 8889998888887766677666666677788888865443 33344555566666676
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCC
Q psy10061 215 LLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCE 250 (325)
Q Consensus 215 ~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~ 250 (325)
.....++-.--|.-....-++.+|-..|-++ +.|.+
T Consensus 177 WeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 177 WERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred hhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 5555455555677777888999999999997 66643
No 304
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.11 E-value=0.72 Score=24.77 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q psy10061 181 YISRAARMCVRVKEFDKAADLIR 203 (325)
Q Consensus 181 ~~~~lg~~~~~~g~~~~A~~~~~ 203 (325)
+...+|.++..+|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 56689999999999999998875
No 305
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.07 E-value=6.1 Score=27.77 Aligned_cols=62 Identities=16% Similarity=0.017 Sum_probs=45.2
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Q psy10061 72 GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNR 136 (325)
Q Consensus 72 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~ 136 (325)
...+..+|+..+.+++..... ..+.-.++--+..+|.+.|+|.+.+.+--.=+++.++..++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~---~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITD---REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 556667777777777655543 33455566777788888999999998888888887777664
No 306
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.61 E-value=6.3 Score=33.12 Aligned_cols=58 Identities=12% Similarity=0.092 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy10061 179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAE 239 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~ 239 (325)
++....+|..|. ..+.++|+.++.+++++........ ...+..++.++..+|+++.|.
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n--~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFN--PEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHHhcchhhhh
Confidence 456677887776 7799999999999999876543332 346788999999999999874
No 307
>KOG4507|consensus
Probab=88.35 E-value=0.52 Score=45.47 Aligned_cols=94 Identities=17% Similarity=0.075 Sum_probs=71.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHH
Q psy10061 105 QAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYIS 183 (325)
Q Consensus 105 ~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~ 183 (325)
.+|..++-+|+...|+.|+..|+...-...+. .+.+++.++...+ ...|..++.+++.+.-.. .-.+.
T Consensus 612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v-----~~v~la~~~~~~~~~~da~~~l~q~l~~~~se------pl~~~ 680 (886)
T KOG4507|consen 612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQDV-----PLVNLANLLIHYGLHLDATKLLLQALAINSSE------PLTFL 680 (886)
T ss_pred cccceeeecCCcHHHHHHHHHHhccChhhhcc-----cHHHHHHHHHHhhhhccHHHHHHHHHhhcccC------chHHH
Confidence 34455566799999999999998665444443 4677888877777 677888888888876221 24667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 184 RAARMCVRVKEFDKAADLIRQEIGYH 209 (325)
Q Consensus 184 ~lg~~~~~~g~~~~A~~~~~~al~~~ 209 (325)
.+|..|..+.+.+.|++.|+.|+..-
T Consensus 681 ~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 681 SLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred hcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 89999999999999999999998753
No 308
>KOG3024|consensus
Probab=88.26 E-value=15 Score=32.56 Aligned_cols=133 Identities=16% Similarity=0.130 Sum_probs=81.2
Q ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcC
Q psy10061 93 NKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGE 172 (325)
Q Consensus 93 ~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~ 172 (325)
.|++..+-..|.-+..-|.++..++.|++..-..+..+-+.+...-++.....+..+++.-.....+-..
T Consensus 19 ~~d~Yeahqm~RTl~fR~~~~K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~~ad~~~~~---------- 88 (312)
T KOG3024|consen 19 LGDYYEAHQMYRTLVFRYTRQKAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKAEVADSLLKV---------- 88 (312)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhHhHHHH----------
Confidence 4677777788888888888888888888877777666666666666666666666555542111111111
Q ss_pred CChhhHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 173 DNYKQAAEYISRAARMCVRVKEFDKA-ADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 173 ~~~~~~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
-+++.+....+.-... ..+.++++.-..+. +.+.+-+..+..+|...+.-+++..|..+|-.+
T Consensus 89 ----------anl~~ll~e~~~~eper~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll~ 153 (312)
T KOG3024|consen 89 ----------ANLAELLGEADPSEPERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWTEDNVEEARRHFLLS 153 (312)
T ss_pred ----------HHHHHHHhhcCCCccHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhhc
Confidence 2334444444322222 23344455444443 223334456778899999999999999998874
No 309
>PRK11906 transcriptional regulator; Provisional
Probab=88.17 E-value=24 Score=33.54 Aligned_cols=149 Identities=7% Similarity=-0.062 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061 77 QQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKEL---------NDLTDVENLAKQAATLFLEQGNREAASTVLEKGA 147 (325)
Q Consensus 77 ~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~---------g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg 147 (325)
..|...|.+|+.... -...-+.+|.-++.||... .+-.+|.++-++|+++- ..| +.++..+|
T Consensus 275 ~~Al~lf~ra~~~~~---ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~D----a~a~~~~g 345 (458)
T PRK11906 275 YRAMTIFDRLQNKSD---IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVD----GKILAIMG 345 (458)
T ss_pred HHHHHHHHHHhhccc---CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCC----HHHHHHHH
Confidence 455666666652211 1122345666666666532 12334555555555441 123 33677788
Q ss_pred HHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q psy10061 148 KSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALV 226 (325)
Q Consensus 148 ~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 226 (325)
.++-..+ ++.|+..+++|+.+.... +.++...|.+..-.|+.++|++++++++.+. |...+.....+.
T Consensus 346 ~~~~~~~~~~~a~~~f~rA~~L~Pn~------A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs-----P~~~~~~~~~~~ 414 (458)
T PRK11906 346 LITGLSGQAKVSHILFEQAKIHSTDI------ASLYYYRALVHFHNEKIEEARICIDKSLQLE-----PRRRKAVVIKEC 414 (458)
T ss_pred HHHHhhcchhhHHHHHHHHhhcCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-----chhhHHHHHHHH
Confidence 8766555 999999999999886543 5688889999999999999999999998863 222222333444
Q ss_pred HHHHhcCCHHHHHHHHHhh
Q psy10061 227 LVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 227 ~~~~~~gd~~~A~~~~~~~ 245 (325)
+-.+.....+.|+..|-+-
T Consensus 415 ~~~~~~~~~~~~~~~~~~~ 433 (458)
T PRK11906 415 VDMYVPNPLKNNIKLYYKE 433 (458)
T ss_pred HHHHcCCchhhhHHHHhhc
Confidence 4223344577888877664
No 310
>KOG1550|consensus
Probab=88.00 E-value=13 Score=36.72 Aligned_cols=118 Identities=17% Similarity=0.141 Sum_probs=75.7
Q ss_pred ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAK-----SFQQCKEYLLKAANCYETNKSAYHAAKHL 103 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g-----~~~~A~~~~~~a~~~~~~~~~~~~aa~~~ 103 (325)
.+.+.|+.+++.|.+.+++... ++ + ...+..+|.+|.... ++..|..+|.++++. |++ .+.
T Consensus 263 ~d~e~a~~~l~~aa~~~~~~a~--~~-~---~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~----g~~----~a~ 328 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAESFKKAAT--KG-L---PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL----GNP----DAQ 328 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHh--hc-C---CccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc----CCc----hHH
Confidence 5788888888888774333110 01 0 012345566665532 667788888887643 332 356
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHHHH
Q psy10061 104 EQAIMMCKELN---DLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL-----KSDAALTLYSRAADV 168 (325)
Q Consensus 104 ~~~~~~y~~~g---~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~-----~~~~A~~~y~~Al~~ 168 (325)
..+|.+|..-. +..+|.++|..|. +.|+.. +..+++.+|... +...|..+|.++.+.
T Consensus 329 ~~lg~~~~~g~~~~d~~~A~~yy~~Aa----~~G~~~----A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 329 YLLGVLYETGTKERDYRRAFEYYSLAA----KAGHIL----AIYRLALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred HHHHHHHHcCCccccHHHHHHHHHHHH----HcCChH----HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 67777777643 4568888888875 345543 577788888754 389999999999864
No 311
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=87.52 E-value=24 Score=32.78 Aligned_cols=125 Identities=10% Similarity=0.037 Sum_probs=68.2
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy10061 72 GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKEL---------NDLTDVENLAKQAATLFLEQGNREAASTV 142 (325)
Q Consensus 72 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~---------g~~~eA~~~~~~A~~~~~~~g~~~~aa~~ 142 (325)
..|+.++|.+.+..++.--.. .....+.-.|.+|.+. ..+++|+.+|.++-++- .++..
T Consensus 194 ~~gdre~Al~il~~~l~~~~~-----~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~---~~~Y~---- 261 (374)
T PF13281_consen 194 KPGDREKALQILLPVLESDEN-----PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE---PDYYS---- 261 (374)
T ss_pred cCCCHHHHHHHHHHHHhccCC-----CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC---ccccc----
Confidence 378888888888776333221 2234666677776642 24677888888776553 33221
Q ss_pred HHHHHHHHhccC--H---HHHHHHHHHHHHHHhcCCChh--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 143 LEKGAKSLEELK--S---DAALTLYSRAADVAHGEDNYK--QAAEYISRAARMCVRVKEFDKAADLIRQEIGY 208 (325)
Q Consensus 143 l~~lg~~~~~~~--~---~~A~~~y~~Al~~~~~~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 208 (325)
-.|++.++...+ . .+..+.-.+.-.+..+.+... .--..+-.++.+.+-.|++++|+..+++++.+
T Consensus 262 GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 262 GINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred hHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 123333333322 1 121121112112222222211 11233456777888899999999999998875
No 312
>KOG3783|consensus
Probab=87.15 E-value=30 Score=33.47 Aligned_cols=87 Identities=10% Similarity=0.059 Sum_probs=65.0
Q ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHhhcc-cCC
Q psy10061 174 NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ-ESEHLLAIGRLAVALVLVQLARGD-TVAAEKAFKEWGN-CCE 250 (325)
Q Consensus 174 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~lg~~~~~~gd-~~~A~~~~~~~~~-~~~ 250 (325)
+.....--+.-+|.++..+|+...|..+|...++-.. ...+.+..+.+++.++..|+.+|. ..++..++.++.. +.+
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 4444444556789999999999999999999887533 234677788899999999999999 9999999999933 323
Q ss_pred Ch-HHHHHHHH
Q psy10061 251 AP-EVQTLEKL 260 (325)
Q Consensus 251 ~~-e~~~l~~L 260 (325)
.+ |.++.-++
T Consensus 524 Y~lenRLh~rI 534 (546)
T KOG3783|consen 524 YELENRLHMRI 534 (546)
T ss_pred cchhhHHHHHH
Confidence 32 44444333
No 313
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.14 E-value=1.5 Score=36.12 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhc
Q psy10061 32 EEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFK-GAKSFQQCKEYLLKAANCYETN 93 (325)
Q Consensus 32 ~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~-~~g~~~~A~~~~~~a~~~~~~~ 93 (325)
.++.+++++|...+...+.. .|++.+|.=+.-.+-..+- ...+..+|..+|.+|.+++.+.
T Consensus 45 ~es~~miedAisK~eeAL~I-~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkA 106 (186)
T PF06552_consen 45 PESKKMIEDAISKFEEALKI-NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKA 106 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 45555666655555432211 3666655444333332222 2345567778888888777754
No 314
>KOG4814|consensus
Probab=87.10 E-value=4.7 Score=39.63 Aligned_cols=97 Identities=11% Similarity=0.137 Sum_probs=71.1
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHH
Q psy10061 143 LEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLA 222 (325)
Q Consensus 143 l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 222 (325)
++.+...+...+|.-++++|...+..+........-+...+.+..+|..+.+.+.|++++++|-+.-+++ +..+
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~--~l~q---- 431 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQS--PLCQ---- 431 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccc--HHHH----
Confidence 4445556666679999999999998877664333337899999999999999999999999986653332 1111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 223 VALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 223 ~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.-+-.+....|...+|+.+....
T Consensus 432 ~~~~~~~~~E~~Se~AL~~~~~~ 454 (872)
T KOG4814|consen 432 LLMLQSFLAEDKSEEALTCLQKI 454 (872)
T ss_pred HHHHHHHHHhcchHHHHHHHHHH
Confidence 23445566778888898888875
No 315
>KOG2114|consensus
Probab=86.35 E-value=20 Score=36.44 Aligned_cols=137 Identities=11% Similarity=0.079 Sum_probs=71.9
Q ss_pred ccccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHH--------------------HHHHHHhcCCHHHHHHH
Q psy10061 23 STMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSK--------------------AATCFKGAKSFQQCKEY 82 (325)
Q Consensus 23 ~~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~--------------------a~~~y~~~g~~~~A~~~ 82 (325)
++.++.|++++|...|.++...+..+.- ...|.+|-..++- +.++|.++++.++=.++
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~le~s~V--i~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~ef 453 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGFLEPSEV--IKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEF 453 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHcccCChHHH--HHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHH
Confidence 3566777899999999998877765310 0111122111111 23566666655433222
Q ss_pred ------------HHHHHHHHHhcCChHHHHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy10061 83 ------------LLKAANCYETNKSAYHAAKHLEQA-------IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVL 143 (325)
Q Consensus 83 ------------~~~a~~~~~~~~~~~~aa~~~~~~-------~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l 143 (325)
++.++++.++.+-...+-..-.+. =.++...++|++|+.+.... .++.+..++
T Consensus 454 I~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~sl--------p~~e~l~~l 525 (933)
T KOG2114|consen 454 ISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISSL--------PISELLRTL 525 (933)
T ss_pred HhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhcC--------CHHHHHHHH
Confidence 344555555544322221111111 12344556666666654432 256667777
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHH
Q psy10061 144 EKGAKSLEELKSDAALTLYSRAADVA 169 (325)
Q Consensus 144 ~~lg~~~~~~~~~~A~~~y~~Al~~~ 169 (325)
.+-|.++....+++-...+-+-....
T Consensus 526 ~kyGk~Ll~h~P~~t~~ili~~~t~~ 551 (933)
T KOG2114|consen 526 NKYGKILLEHDPEETMKILIELITEL 551 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHHHhhc
Confidence 88888887777666555554444433
No 316
>KOG0686|consensus
Probab=86.26 E-value=17 Score=33.89 Aligned_cols=110 Identities=13% Similarity=0.026 Sum_probs=66.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHH
Q psy10061 88 NCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL-KSDAALTLYSRAA 166 (325)
Q Consensus 88 ~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~-~~~~A~~~y~~Al 166 (325)
+.++...-....-.++..++.-|...|+++.|+++|-++-+.+...+..- ..+.++-.+-... ++..-..+-.+|.
T Consensus 138 k~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvI---nm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 138 KSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVI---NMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHH---HHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 33443334456778999999999999999999999999888877766543 3344433332222 2333333333332
Q ss_pred HH-------HhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061 167 DV-------AHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQE 205 (325)
Q Consensus 167 ~~-------~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 205 (325)
.. .+..+ ....|+ .|.+...+++|..|..+|-.+
T Consensus 215 st~~~~~~~~q~v~---~kl~C~--agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 215 STPDANENLAQEVP---AKLKCA--AGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hCchhhhhHHHhcC---cchHHH--HHHHHHHHHHHHHHHHHHHhC
Confidence 22 11111 113344 555566667999999887554
No 317
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.09 E-value=14 Score=35.19 Aligned_cols=102 Identities=17% Similarity=0.094 Sum_probs=55.0
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------HHHHcCCHHHHHHHH
Q psy10061 70 FKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAAT------LFLEQGNREAASTVL 143 (325)
Q Consensus 70 y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~------~~~~~g~~~~aa~~l 143 (325)
...+|+.+.|.+ +..++.++. .+.++|.....+|+++-|..+|+++-+ +|...|+.. -+
T Consensus 328 Al~lg~L~~A~~-------~a~~~~~~~----~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~----~L 392 (443)
T PF04053_consen 328 ALQLGNLDIALE-------IAKELDDPE----KWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDRE----KL 392 (443)
T ss_dssp HHHCT-HHHHHH-------HCCCCSTHH----HHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HH----HH
T ss_pred HHhcCCHHHHHH-------HHHhcCcHH----HHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHH----HH
Confidence 335555555444 444444433 788888888888988888888877533 344555543 34
Q ss_pred HHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHH
Q psy10061 144 EKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAAD 200 (325)
Q Consensus 144 ~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 200 (325)
.+++.+....+ +..|..++--. |+ ...+..++.+.|++++|.-
T Consensus 393 ~kl~~~a~~~~~~n~af~~~~~l-------gd-------~~~cv~lL~~~~~~~~A~~ 436 (443)
T PF04053_consen 393 SKLAKIAEERGDINIAFQAALLL-------GD-------VEECVDLLIETGRLPEAAL 436 (443)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH-------T--------HHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHc-------CC-------HHHHHHHHHHcCCchHHHH
Confidence 55555554443 44443333111 11 1234456677777777653
No 318
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=86.09 E-value=3.7 Score=26.46 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQEIGY 208 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 208 (325)
+++..++..+.++|+|.+|..+.+..|++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 45556666666666666666666666654
No 319
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.61 E-value=26 Score=31.30 Aligned_cols=114 Identities=19% Similarity=0.151 Sum_probs=70.6
Q ss_pred HHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH---------------HHHHHHHcc
Q psy10061 149 SLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQ---------------EIGYHQESE 213 (325)
Q Consensus 149 ~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~---------------al~~~~~~~ 213 (325)
..+..++.+|...+..++....+. .++...++.+|...|+.+.|...+.. -+++..+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPEN------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCccc------chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 333444666777777766665544 23445566666666666655555432 122222111
Q ss_pred --------------cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----cccCCChHHHHHHHHHHHHhcCCH
Q psy10061 214 --------------HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW----GNCCEAPEVQTLEKLLQAFDEEDP 269 (325)
Q Consensus 214 --------------~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~~~~~e~~~l~~L~~a~~~gd~ 269 (325)
++.. ...-+.++..+...|+++.|.+.+-.. ..|.+..-.+.+..+.++.+.+|+
T Consensus 218 ~~~~~~~l~~~~aadPdd-~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 218 ATPEIQDLQRRLAADPDD-VEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred cCCCHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 1111 234467899999999999999998886 456566566677788888888888
No 320
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=85.34 E-value=2.5 Score=27.26 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHH
Q psy10061 221 LAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQA 263 (325)
Q Consensus 221 ~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a 263 (325)
+++.+++.+...|+|..|..+.+.. ..-++..++..|..+++-
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~ 46 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIED 46 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 3566889999999999999999998 444566677777766553
No 321
>KOG2053|consensus
Probab=85.04 E-value=50 Score=34.03 Aligned_cols=87 Identities=11% Similarity=0.049 Sum_probs=55.1
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI 107 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~ 107 (325)
++++++|.....+-.+... +-.- +..+. +....++|..++|..++ ++.......+ -..+.-+-
T Consensus 22 ~~qfkkal~~~~kllkk~P--------n~~~-a~vLk--aLsl~r~gk~~ea~~~L-e~~~~~~~~D-----~~tLq~l~ 84 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHP--------NALY-AKVLK--ALSLFRLGKGDEALKLL-EALYGLKGTD-----DLTLQFLQ 84 (932)
T ss_pred hHHHHHHHHHHHHHHHHCC--------CcHH-HHHHH--HHHHHHhcCchhHHHHH-hhhccCCCCc-----hHHHHHHH
Confidence 4578888777776554442 2221 11121 33445789999998554 3333333222 23566678
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 108 MMCKELNDLTDVENLAKQAATLFL 131 (325)
Q Consensus 108 ~~y~~~g~~~eA~~~~~~A~~~~~ 131 (325)
.+|++++++++|..+|++++.-+-
T Consensus 85 ~~y~d~~~~d~~~~~Ye~~~~~~P 108 (932)
T KOG2053|consen 85 NVYRDLGKLDEAVHLYERANQKYP 108 (932)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhCC
Confidence 899999999999999999975543
No 322
>PRK10941 hypothetical protein; Provisional
Probab=83.90 E-value=13 Score=32.83 Aligned_cols=85 Identities=9% Similarity=0.086 Sum_probs=64.2
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChH
Q psy10061 175 YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPE 253 (325)
Q Consensus 175 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e 253 (325)
..-....++++-.+|.+.++++.|+.+.+..+.+.+.. + .-+...|.+|...|.+..|..-++.+ ........
T Consensus 177 ~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~d--p----~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 177 IEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPED--P----YEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCC--H----HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 33445677888899999999999999999988875432 2 12245799999999999999999998 66666666
Q ss_pred HHHHHHHHHHHh
Q psy10061 254 VQTLEKLLQAFD 265 (325)
Q Consensus 254 ~~~l~~L~~a~~ 265 (325)
..++...+..+.
T Consensus 251 a~~ik~ql~~l~ 262 (269)
T PRK10941 251 SEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHHh
Confidence 666666655554
No 323
>KOG2908|consensus
Probab=83.80 E-value=34 Score=31.18 Aligned_cols=179 Identities=14% Similarity=0.108 Sum_probs=92.7
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHH
Q psy10061 110 CKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQ-AAEYISRAAR 187 (325)
Q Consensus 110 y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~-~~~~~~~lg~ 187 (325)
..+.++.++|+++.++..+-......++........++.++-..+ ..++.+...+.-........... .-..+..++.
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lss 164 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSS 164 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHH
Confidence 344557777777777777777766666666666777777766555 77777766666666665555433 3344555554
Q ss_pred HHH-HcCCHHHHHHHHHHHHHHHH--Hccc--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh---ccc---CCChHHHH
Q psy10061 188 MCV-RVKEFDKAADLIRQEIGYHQ--ESEH--LLAIGRLAVALVLVQLARGDTVAAEKAFKEW---GNC---CEAPEVQT 256 (325)
Q Consensus 188 ~~~-~~g~~~~A~~~~~~al~~~~--~~~~--~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~---~~~---~~~~e~~~ 256 (325)
-|+ ..|++... |+.+|.... ++.+ ........+.+|..-+--+.+ -.|-+. |.| .+ -+.+=
T Consensus 165 qYyk~~~d~a~y---Yr~~L~YL~~~d~~~l~~se~~~lA~~L~~aALLGe~i----yNfGELL~HPilesL~g-T~~eW 236 (380)
T KOG2908|consen 165 QYYKKIGDFASY---YRHALLYLGCSDIDDLSESEKQDLAFDLSLAALLGENI----YNFGELLAHPILESLKG-TNREW 236 (380)
T ss_pred HHHHHHHhHHHH---HHHHHHHhccccccccCHHHHHHHHHHHHHHHHhcccc----ccHHHHHhhHHHHHhcC-CcHHH
Confidence 443 33555533 333333211 1111 111111112233332221111 011111 222 22 22344
Q ss_pred HHHHHHHHhcCCHHHHHHHhcC-hhhhcccHHHHHHhhcCC
Q psy10061 257 LEKLLQAFDEEDPEGARQALND-PFIKHMDVEYSRLARDLP 296 (325)
Q Consensus 257 l~~L~~a~~~gd~~~~~~~~~~-~~~~~l~~~~~~~~~~l~ 296 (325)
|.++..|+..||...|.+..+. ..+.-+......+..|+.
T Consensus 237 L~dll~Afn~Gdl~~f~~l~~~~~~~p~L~~~e~~L~qKI~ 277 (380)
T KOG2908|consen 237 LKDLLIAFNSGDLKRFESLKGVWGKQPDLASNEDFLLQKIR 277 (380)
T ss_pred HHHHHHHhccCCHHHHHHHHHHhccCchHHHHHHHHHHHHH
Confidence 6677888889999999988766 333344455555555554
No 324
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=83.14 E-value=19 Score=27.74 Aligned_cols=67 Identities=7% Similarity=-0.149 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCh---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 64 SKAATCFKGAKSFQQCKEYLLKAANCYETNKSA---------YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLF 130 (325)
Q Consensus 64 ~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~---------~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~ 130 (325)
...|+...+.+++-.++-+|++|+.+..++... .--.....|++..++.+|+.+-.+.|++-|.+-.
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~V 80 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKV 80 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 345555666677777777777777777665311 1123456678888888888888888887776543
No 325
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=82.90 E-value=33 Score=32.78 Aligned_cols=108 Identities=13% Similarity=0.081 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy10061 63 YSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTV 142 (325)
Q Consensus 63 y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~ 142 (325)
.++++......|-++.|+..-. |+.. -. ++..+.|+++.|.+ +..+..+.. .
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~----------D~~~----rF---eLAl~lg~L~~A~~-------~a~~~~~~~----~ 349 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVT----------DPDH----RF---ELALQLGNLDIALE-------IAKELDDPE----K 349 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-----------HHH----HH---HHHHHCT-HHHHHH-------HCCCCSTHH----H
T ss_pred HHHHHHHHHHCCCHHHHHhhcC----------ChHH----Hh---HHHHhcCCHHHHHH-------HHHhcCcHH----H
Confidence 4555555666666666665422 2211 01 12344566555544 334444433 6
Q ss_pred HHHHHHHHhccC-HHHHHHHHHHHHHH------HhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy10061 143 LEKGAKSLEELK-SDAALTLYSRAADV------AHGEDNYKQAAEYISRAARMCVRVKEFDKAADLI 202 (325)
Q Consensus 143 l~~lg~~~~~~~-~~~A~~~y~~Al~~------~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 202 (325)
+..||......+ ++-|.++|+++-+. +-..|+. +-+.+++.+....|++.-|...+
T Consensus 350 W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~----~~L~kl~~~a~~~~~~n~af~~~ 412 (443)
T PF04053_consen 350 WKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDR----EKLSKLAKIAEERGDINIAFQAA 412 (443)
T ss_dssp HHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-H----HHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCH----HHHHHHHHHHHHccCHHHHHHHH
Confidence 778888877766 88888888776442 3333443 45667788878888887776654
No 326
>KOG3364|consensus
Probab=82.26 E-value=16 Score=28.77 Aligned_cols=80 Identities=9% Similarity=0.018 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHH
Q psy10061 179 AEYISRAARMCVRVKEFD---KAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEV 254 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~ 254 (325)
.++..+++++++...+.+ +-+.+++..+. ..++...-.+.+-++.-|...++|+.++.+.+.. +.-.++.++
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 357778898888876544 55666665543 1233333345566888899999999999999987 555567777
Q ss_pred HHHHHHHH
Q psy10061 255 QTLEKLLQ 262 (325)
Q Consensus 255 ~~l~~L~~ 262 (325)
..|...++
T Consensus 108 ~~Lk~~ie 115 (149)
T KOG3364|consen 108 LELKETIE 115 (149)
T ss_pred HHHHHHHH
Confidence 77765544
No 327
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=82.08 E-value=37 Score=30.36 Aligned_cols=128 Identities=9% Similarity=-0.059 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHH
Q psy10061 119 VENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDK 197 (325)
Q Consensus 119 A~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 197 (325)
-++-+.+.++-.+..+-....+++..++|..|-+.. .+.+.+++.+.+.-.-..|-.....-+..++|.+|..+.=..+
T Consensus 94 ki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e 173 (412)
T COG5187 94 KIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEE 173 (412)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHH
Confidence 334444444433443334556788999999998775 8888888888776665556555555566778888866554444
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccC
Q psy10061 198 AADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCC 249 (325)
Q Consensus 198 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~ 249 (325)
-++. +-.+.++-++.....++-.--|.-.+..-++.+|-..+..+ +.|.
T Consensus 174 ~lE~---~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 174 SLEV---ADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHH---HHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 4433 33344455554434444444566666667788888888886 6664
No 328
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=82.02 E-value=3.2 Score=43.17 Aligned_cols=96 Identities=6% Similarity=-0.027 Sum_probs=64.6
Q ss_pred cHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy10061 30 KKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFK----GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQ 105 (325)
Q Consensus 30 ~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~----~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~ 105 (325)
+.=-|.++|.+|+..+++.-.+| |.=.+.-++--++|.... ..|+. +-|.+|+.-+.++.+..++---|..
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESF-PGRKEGYEAQFRLGITLLEKASEQGDP----RDFTQALSEFSYLHGGVGAPLEYLG 557 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcC-CCcccchHHHHHhhHHHHHHHHhcCCh----HHHHHHHHHHHHhcCCCCCchHHHh
Confidence 34457788888887777632222 222333344445554432 22332 5677888888888777777777888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 106 AIMMCKELNDLTDVENLAKQAATLF 130 (325)
Q Consensus 106 ~~~~y~~~g~~~eA~~~~~~A~~~~ 130 (325)
-+.+|.++|+++|-+++|..|+.-|
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRY 582 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 8999999999999999999998644
No 329
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=82.01 E-value=39 Score=30.53 Aligned_cols=114 Identities=9% Similarity=-0.007 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHH-HHhcC-
Q psy10061 96 AYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAAD-VAHGE- 172 (325)
Q Consensus 96 ~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~-~~~~~- 172 (325)
+...+..+...+.+.++.|+++-|..+..++.......+.. ...+...-+.++-..+ ..+|+..++..+. .....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~ 219 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI 219 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence 55666777777888888888887777777665543222210 1112222333333333 6777777777766 22211
Q ss_pred --------------------------CChhhHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHH
Q psy10061 173 --------------------------DNYKQAAEYISRAARMCVRV------KEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 173 --------------------------~~~~~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~~~ 211 (325)
......+.++..+|...... +..++++..|.+++.+.+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 290 (352)
T PF02259_consen 220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS 290 (352)
T ss_pred ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence 11234457777888877777 7888899999998887544
No 330
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=81.75 E-value=4.3 Score=35.61 Aligned_cols=43 Identities=12% Similarity=0.036 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061 158 ALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEI 206 (325)
Q Consensus 158 A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 206 (325)
|..+|.+|+.+.+..| ..++++|.++...|+.-.|+-+|-+++
T Consensus 1 A~~~Y~~A~~l~P~~G------~p~nQLAvl~~~~~~~l~avy~y~Rsl 43 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNG------NPYNQLAVLASYQGDDLDAVYYYIRSL 43 (278)
T ss_dssp HHHHHHHHHHH-TTBS------HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCC------CcccchhhhhccccchHHHHHHHHHHH
Confidence 3445555555555444 244455555555555555554444443
No 331
>PF12854 PPR_1: PPR repeat
Probab=81.55 E-value=3.3 Score=23.77 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQ 204 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~ 204 (325)
.+|+.+-..|.+.|+.++|+++|++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4788888999999999999998875
No 332
>KOG1497|consensus
Probab=80.93 E-value=43 Score=30.34 Aligned_cols=100 Identities=16% Similarity=0.084 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh---ccc
Q psy10061 176 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH----LLAIGRLAVALVLVQLARGDTVAAEKAFKEW---GNC 248 (325)
Q Consensus 176 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~---~~~ 248 (325)
.....+...++.+|-+-++|..|...+. ++.. ..|. .......+..++.+|+.-||..+|..+-.+. ..+
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~--~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~ 176 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLV-GIPL--DTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAE 176 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCc--ccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhc
Confidence 4456678899999999999999887753 2222 2221 2233445678999999999999999999986 344
Q ss_pred CCChHHHHHHHHHHHHhcCCHHHHHHHhcC
Q psy10061 249 CEAPEVQTLEKLLQAFDEEDPEGARQALND 278 (325)
Q Consensus 249 ~~~~e~~~l~~L~~a~~~gd~~~~~~~~~~ 278 (325)
..+++-.+..+++.|....-..+|.++.++
T Consensus 177 ~~Ne~Lqie~kvc~ARvlD~krkFlEAAqr 206 (399)
T KOG1497|consen 177 SSNEQLQIEYKVCYARVLDYKRKFLEAAQR 206 (399)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566665433333445544443
No 333
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.60 E-value=3.6 Score=25.43 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=20.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061 183 SRAARMCVRVKEFDKAADLIRQEIG 207 (325)
Q Consensus 183 ~~lg~~~~~~g~~~~A~~~~~~al~ 207 (325)
.+++..|+.+|+++.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4678888888888888888888764
No 334
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.54 E-value=8.8 Score=23.67 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061 104 EQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLE 144 (325)
Q Consensus 104 ~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~ 144 (325)
.+++..|..+|+.+.|.+.+++.+ ..|++.....+..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl----~~~~~~q~~eA~~ 39 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI----EEGDEAQRQEARA 39 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH----HcCCHHHHHHHHH
Confidence 467888999999999999888876 3577665544433
No 335
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=78.77 E-value=20 Score=25.08 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=19.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 103 LEQAIMMCKELNDLTDVENLAKQAATLFLE 132 (325)
Q Consensus 103 ~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~ 132 (325)
+...+.-+-+.|++++|+.+|..+++.+..
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 333333444558888888888888887655
No 336
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=78.59 E-value=5.5 Score=27.75 Aligned_cols=35 Identities=17% Similarity=0.076 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHH
Q psy10061 31 KEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFK 71 (325)
Q Consensus 31 ~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~ 71 (325)
.++|+.+.++|...=+. ++|++|.++|.++...+.
T Consensus 3 l~kai~Lv~~A~~eD~~------gny~eA~~lY~~ale~~~ 37 (75)
T cd02680 3 LERAHFLVTQAFDEDEK------GNAEEAIELYTEAVELCI 37 (75)
T ss_pred HHHHHHHHHHHHHhhHh------hhHHHHHHHHHHHHHHHH
Confidence 34555666655433332 455555555555554443
No 337
>KOG1920|consensus
Probab=78.46 E-value=68 Score=34.24 Aligned_cols=11 Identities=18% Similarity=0.301 Sum_probs=4.8
Q ss_pred cCCHHHHHHHH
Q psy10061 73 AKSFQQCKEYL 83 (325)
Q Consensus 73 ~g~~~~A~~~~ 83 (325)
+++|++|+.++
T Consensus 893 L~ry~~AL~hL 903 (1265)
T KOG1920|consen 893 LKRYEDALSHL 903 (1265)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 338
>KOG0985|consensus
Probab=78.43 E-value=62 Score=34.17 Aligned_cols=125 Identities=13% Similarity=0.043 Sum_probs=63.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061 65 KAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLE 144 (325)
Q Consensus 65 ~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~ 144 (325)
+++.+....|...+|++.|.+ .+|+. .|.+...+..+.|.|++-+.++.-|-.-.++..--....-+|.
T Consensus 1109 qlakAQL~~~~v~dAieSyik-------adDps----~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyA 1177 (1666)
T KOG0985|consen 1109 QLAKAQLQGGLVKDAIESYIK-------ADDPS----NYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYA 1177 (1666)
T ss_pred HHHHHHHhcCchHHHHHHHHh-------cCCcH----HHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence 344455555555555555544 33433 4666667777777777777777666543333222222223333
Q ss_pred HHHHHHhcc------C---H-HHHHHHHHH-----HHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061 145 KGAKSLEEL------K---S-DAALTLYSR-----AADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIG 207 (325)
Q Consensus 145 ~lg~~~~~~------~---~-~~A~~~y~~-----Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 207 (325)
+.+.+.+-. + . .-.-+||.. |--+|. ....+.+++..++.+|+|+.|++.-++|-.
T Consensus 1178 kt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~-------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1178 KTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS-------NVSNFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred HhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH-------HhhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 333222211 1 0 011122221 111111 123566788888999999999988777643
No 339
>KOG0376|consensus
Probab=78.36 E-value=2.1 Score=40.45 Aligned_cols=80 Identities=21% Similarity=0.177 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcC
Q psy10061 154 KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARG 233 (325)
Q Consensus 154 ~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g 233 (325)
.++.|+..|.+|+++-... +..+.+-+..+++.++|..|+.-+.+++++.+ ....+|+.-|.++.+.+
T Consensus 19 ~fd~avdlysKaI~ldpnc------a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP------~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 19 VFDVAVDLYSKAIELDPNC------AIYFANRALAHLKVESFGGALHDALKAIELDP------TYIKAYVRRGTAVMALG 86 (476)
T ss_pred hHHHHHHHHHHHHhcCCcc------eeeechhhhhheeechhhhHHHHHHhhhhcCc------hhhheeeeccHHHHhHH
Confidence 3888888888888765432 22344555677788888888888888877532 23346667777778888
Q ss_pred CHHHHHHHHHhh
Q psy10061 234 DTVAAEKAFKEW 245 (325)
Q Consensus 234 d~~~A~~~~~~~ 245 (325)
.+.+|...|+..
T Consensus 87 ~~~~A~~~l~~~ 98 (476)
T KOG0376|consen 87 EFKKALLDLEKV 98 (476)
T ss_pred HHHHHHHHHHHh
Confidence 888888887775
No 340
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=78.27 E-value=20 Score=24.96 Aligned_cols=33 Identities=9% Similarity=0.073 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 101 KHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ 133 (325)
Q Consensus 101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~ 133 (325)
..|...+.-+-..|++.+|+.+|+++++++.+.
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~ 39 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI 39 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 334444444556688888888888888876654
No 341
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=78.04 E-value=4 Score=22.11 Aligned_cols=26 Identities=8% Similarity=0.148 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061 181 YISRAARMCVRVKEFDKAADLIRQEI 206 (325)
Q Consensus 181 ~~~~lg~~~~~~g~~~~A~~~~~~al 206 (325)
+|+.+-..|.+.|++++|.+.|++..
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHh
Confidence 35667777778888888887777654
No 342
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=77.95 E-value=7.5 Score=26.34 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHH
Q psy10061 32 EEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAAT 68 (325)
Q Consensus 32 ~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~ 68 (325)
++|.++..+|.+.=+. +++++|.++|.++..
T Consensus 3 ~~A~~~~~~Av~~D~~------g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 3 DKAIELIKKAVEADEA------GNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHT------TSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHH
Confidence 3444455554444332 455555555544433
No 343
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=77.47 E-value=8.8 Score=27.03 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHh
Q psy10061 155 SDAALTLYSRAADVAH 170 (325)
Q Consensus 155 ~~~A~~~y~~Al~~~~ 170 (325)
.++|+.+|++++....
T Consensus 24 ~e~Al~~Y~~gi~~l~ 39 (79)
T cd02679 24 KEQALAHYRKGLRELE 39 (79)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 344
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=77.35 E-value=16 Score=26.41 Aligned_cols=50 Identities=22% Similarity=0.226 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh----cccCCChHHHHHHHHHHHHhcCCH
Q psy10061 220 RLAVALVLVQLARGDTVAAEKAFKEW----GNCCEAPEVQTLEKLLQAFDEEDP 269 (325)
Q Consensus 220 ~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~~~~~e~~~l~~L~~a~~~gd~ 269 (325)
.+.+.++..+...|+++.|.+.+-.. +.+.+..--+.+..+.+.+..+|+
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~p 76 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDP 76 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCCh
Confidence 35567888888888888888888886 344444333566666666666655
No 345
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=77.26 E-value=11 Score=25.47 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=16.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 105 QAIMMCKELNDLTDVENLAKQAATLFL 131 (325)
Q Consensus 105 ~~~~~y~~~g~~~eA~~~~~~A~~~~~ 131 (325)
+-|.-+-+.|++++|+.+|.++++.+.
T Consensus 10 ~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 10 KKAVEADEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 334444455677777777777766544
No 346
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=77.13 E-value=64 Score=30.13 Aligned_cols=132 Identities=9% Similarity=-0.021 Sum_probs=69.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061 67 ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMC--KELNDLTDVENLAKQAATLFLEQGNREAASTVLE 144 (325)
Q Consensus 67 ~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y--~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~ 144 (325)
+.-..+.++|..|...+.....- +..... ...+..++..| +..-++.+|.++++........ .......+.
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~---l~~~~~~l~ 210 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR---LPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKA---LNQEREGLK 210 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh---CCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhh---hHhHHHHHH
Confidence 34445889999999998887653 322222 45666666655 4566788898888887655333 011111122
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHhcCC-C-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 145 KGAKSLEELKSDAALTLYSRAADVAHGED-N-YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 145 ~lg~~~~~~~~~~A~~~y~~Al~~~~~~~-~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 211 (325)
.+..+.. +...+........... + .......+..-+.=-...|+|+.|+..+-++++++-+
T Consensus 211 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q 273 (379)
T PF09670_consen 211 ELVEVLK------ALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQ 273 (379)
T ss_pred HHHHHHH------HHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 2221111 1111112222111111 1 1111112222222234579999999999999998654
No 347
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=76.79 E-value=36 Score=29.37 Aligned_cols=110 Identities=15% Similarity=-0.018 Sum_probs=56.0
Q ss_pred cccccccHHHHHHHHHHHHhhhcccccCCCCCHHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChH-HHHH
Q psy10061 24 TMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSA-ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAY-HAAK 101 (325)
Q Consensus 24 ~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A-~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~-~aa~ 101 (325)
|.+..|+|+.|++...-|...-...=-.|+.++.-. ++-+-..+......|..-+. .+......+......+. -.|.
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~~~~dmpd~vrAK 170 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLTTEWDMPDEVRAK 170 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHhcCCCChHHHHH
Confidence 445568899999999988776432101223344333 23333333333344442221 12333333333333332 3455
Q ss_pred HHHHHHHHHH---------HcCCHHHHHHHHHHHHHHHHHcC
Q psy10061 102 HLEQAIMMCK---------ELNDLTDVENLAKQAATLFLEQG 134 (325)
Q Consensus 102 ~~~~~~~~y~---------~~g~~~eA~~~~~~A~~~~~~~g 134 (325)
.|.-+|..+. ..+++..|+.++++|+.+..+.|
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 6666666662 34456667777777776666655
No 348
>KOG2114|consensus
Probab=76.67 E-value=96 Score=31.92 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=35.2
Q ss_pred HHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy10061 36 EYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANC 89 (325)
Q Consensus 36 ~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~ 89 (325)
++|.-|.++.|.. .-+-+.-.++..+.|.-....|++++|.+.|.+++..
T Consensus 348 ~ly~~Ai~LAk~~----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 348 NLYKVAINLAKSQ----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred hhHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 3444455555542 2455666788888888888999999999998887643
No 349
>PF02071 NSF: Aromatic-di-Alanine (AdAR) repeat ; InterPro: IPR000744 Regulated exocytosis of neurotransmitters and hormones, as well as intracellular traffic, requires fusion of two lipid bilayers. SNARE proteins are thought to form a protein bridge, the SNARE complex, between an incoming vesicle and the acceptor compartment. SNARE proteins contribute to the specificity of membrane fusion, implying that the mechanisms by which SNAREs are targeted to subcellular compartments are important for specific docking and fusion of vesicles. This mechanism involves a family of conserved proteins, members of which appear to function at all sites of constitutive and regulated secretion in eukaryotes []. Among them are 2 types of cytosolic protein, NSF (N-ethyl-maleimide-sensitive protein) and the SNAPs (alpha-, beta- and gamma-soluble NSF attachment proteins). The yeast vesicular fusion protein, sec17, a cytoplasmic peripheral membrane protein involved in vesicular transport between the endoplasmic reticulum and the golgi apparatus, shows a high degree of sequence similarity to the alpha-SNAP family. SNAP-25 and its non-neuronal homologue Syndet/SNAP-23 are synthesized as soluble proteins in the cytosol. Both SNAP-25 and Syndet/SNAP-23 are palmitoylated at cysteine residues clustered in a loop between two N- and C-terminal coils and palmitoylation is essential for membrane binding and plasma membrane targeting. The C-terminal and the N-terminal helices of SNAP-25, are each targeted to the plasma membrane by two distinct cysteine-rich domains and appear to regulate the availability of SNAP to form complexes with SNARE [].; GO: 0006886 intracellular protein transport
Probab=76.02 E-value=1.1 Score=19.52 Aligned_cols=9 Identities=56% Similarity=0.914 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q psy10061 61 DDYSKAATC 69 (325)
Q Consensus 61 ~~y~~a~~~ 69 (325)
++|++++++
T Consensus 3 ~~y~~Aa~~ 11 (12)
T PF02071_consen 3 KCYEKAAEC 11 (12)
T ss_pred HHHHHHHhh
Confidence 344444443
No 350
>KOG2610|consensus
Probab=75.98 E-value=64 Score=29.59 Aligned_cols=158 Identities=12% Similarity=0.001 Sum_probs=93.8
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q psy10061 72 GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLE 151 (325)
Q Consensus 72 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~ 151 (325)
-.|++.+|..-+.+.++-+..- --+....=.+|.-+|+...-...+++.+.-+ +.+..--.-+..-.+-.++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtD------lla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTD------LLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred ccccccHHHHHHHHHHHhCchh------hhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHH
Confidence 4455556555555554433310 1112222234555566665555555554322 1222211122223344455
Q ss_pred ccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q psy10061 152 ELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQL 230 (325)
Q Consensus 152 ~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~ 230 (325)
..+ |++|.+.-.+++++-+.. .-+....+.++...|++.++.+..++.-..-++. ....++.|-..+++|+
T Consensus 187 E~g~y~dAEk~A~ralqiN~~D------~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s--~mlasHNyWH~Al~~i 258 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINRFD------CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS--WMLASHNYWHTALFHI 258 (491)
T ss_pred HhccchhHHHHHHhhccCCCcc------hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh--hHHHhhhhHHHHHhhh
Confidence 667 999999999999876543 2345567888889999999999877654443321 1123344456788999
Q ss_pred hcCCHHHHHHHHHhh
Q psy10061 231 ARGDTVAAEKAFKEW 245 (325)
Q Consensus 231 ~~gd~~~A~~~~~~~ 245 (325)
..++|+.|++.|.+-
T Consensus 259 E~aeye~aleIyD~e 273 (491)
T KOG2610|consen 259 EGAEYEKALEIYDRE 273 (491)
T ss_pred cccchhHHHHHHHHH
Confidence 999999999999983
No 351
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.67 E-value=45 Score=27.61 Aligned_cols=142 Identities=15% Similarity=0.080 Sum_probs=80.2
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q psy10061 70 FKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ--GNREAASTVLEKGA 147 (325)
Q Consensus 70 y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~--g~~~~aa~~l~~lg 147 (325)
|...+.-+++.+.|..++.+... +..++|+..+... .+. |.+. .-+..+++
T Consensus 49 yw~~s~as~sgd~flaAL~lA~~---------------------~k~d~Alaaf~~l----ektg~g~Yp--vLA~mr~a 101 (221)
T COG4649 49 YWQTSRASKSGDAFLAALKLAQE---------------------NKTDDALAAFTDL----EKTGYGSYP--VLARMRAA 101 (221)
T ss_pred hhcccccccchHHHHHHHHHHHc---------------------CCchHHHHHHHHH----HhcCCCcch--HHHHHHHH
Confidence 45555566666666666666543 2344444443332 222 3333 22344556
Q ss_pred HHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q psy10061 148 KSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALV 226 (325)
Q Consensus 148 ~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 226 (325)
.+....+ ...|+..|.++..-..- . ....-.+..+.+.+++..|-|++-....+-. . .-+++. ...+...+|
T Consensus 102 t~~a~kgdta~AV~aFdeia~dt~~-P-~~~rd~ARlraa~lLvD~gsy~dV~srvepL---a-~d~n~m-R~sArEALg 174 (221)
T COG4649 102 TLLAQKGDTAAAVAAFDEIAADTSI-P-QIGRDLARLRAAYLLVDNGSYDDVSSRVEPL---A-GDGNPM-RHSAREALG 174 (221)
T ss_pred HHHhhcccHHHHHHHHHHHhccCCC-c-chhhHHHHHHHHHHHhccccHHHHHHHhhhc---c-CCCChh-HHHHHHHHh
Confidence 5655554 77777777665432111 0 0111234556777888999998766554321 1 112222 223456789
Q ss_pred HHHHhcCCHHHHHHHHHhh
Q psy10061 227 LVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 227 ~~~~~~gd~~~A~~~~~~~ 245 (325)
..-++.||+.+|...|.+.
T Consensus 175 lAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 175 LAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHhccchHHHHHHHHHH
Confidence 9999999999999999997
No 352
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.35 E-value=24 Score=31.56 Aligned_cols=56 Identities=25% Similarity=0.341 Sum_probs=45.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 184 RAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 184 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.-+.-....|++.+|...|..++...++. +.+...++.|++..|+.+.|...+...
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~------~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPEN------SEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCccc------chHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34455678899999999999998876554 235567999999999999999998875
No 353
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=75.24 E-value=20 Score=31.59 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Q psy10061 155 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLAR 232 (325)
Q Consensus 155 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~ 232 (325)
+..|.++..+|+-..+..++......+-...+..|+...+|+-|..+|..|+.++..-.-+.++.+.-..+-..+-.+
T Consensus 55 ~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~~We~rLet~L~~~~kkQ 132 (368)
T COG5091 55 MENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDTLPLWEDRLETKLNKKNKKQ 132 (368)
T ss_pred hhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhHhhHhh
Confidence 778888888888888888877666666677788888888899888888888887665444444433433344444333
No 354
>KOG0985|consensus
Probab=75.22 E-value=1.2e+02 Score=32.27 Aligned_cols=166 Identities=16% Similarity=0.089 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH-------HHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------
Q psy10061 60 ADDYSKAATCFKGAKSFQQCKEYLLK-------AANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQA------ 126 (325)
Q Consensus 60 ~~~y~~a~~~y~~~g~~~~A~~~~~~-------a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A------ 126 (325)
.++|+.|-.+|++..-...|+..+.. |.+...+.+. -..+.+++....+.|...+|++.|-+|
T Consensus 1061 ~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~----p~vWsqlakAQL~~~~v~dAieSyikadDps~y 1136 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNE----PAVWSQLAKAQLQGGLVKDAIESYIKADDPSNY 1136 (1666)
T ss_pred hhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCC----hHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHH
Confidence 36777777888777777777766543 3333333333 346778888888888888888877664
Q ss_pred ---HHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHH-HHHHHHHHHHhc---CCChhhHHHHHHHHHHHHHHcCCHHHHH
Q psy10061 127 ---ATLFLEQGNREAASTVLEKGAKSLEELKSDAAL-TLYSRAADVAHG---EDNYKQAAEYISRAARMCVRVKEFDKAA 199 (325)
Q Consensus 127 ---~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~-~~y~~Al~~~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 199 (325)
+++..+.|.++.....+...-.-......+.++ -.|-+.-.+.+- ..- +.. .-...+|.-+...|.|+.|.
T Consensus 1137 ~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~g-pN~-A~i~~vGdrcf~~~~y~aAk 1214 (1666)
T KOG0985|consen 1137 LEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAG-PNV-ANIQQVGDRCFEEKMYEAAK 1214 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcC-CCc-hhHHHHhHHHhhhhhhHHHH
Confidence 333444455444444333322222222222211 111111111100 000 000 12345666666666666555
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 200 DLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 200 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
-+|... . -+-.++..+...|+|..|.+.-+++
T Consensus 1215 l~y~~v-------S-------N~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1215 LLYSNV-------S-------NFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHh-------h-------hHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 444321 1 2234566667778888888887774
No 355
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=75.17 E-value=70 Score=29.64 Aligned_cols=96 Identities=13% Similarity=0.103 Sum_probs=59.8
Q ss_pred HHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Q psy10061 145 KGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAV 223 (325)
Q Consensus 145 ~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 223 (325)
+-...+...| +..|+++.+-.+.+-... |+.+ ++..|-....+.++|+=-++.++......... .....+...+
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~-DP~g---~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~-~~~~lPn~a~ 182 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSLDPDE-DPLG---VLLFIDYYALRSRQYQWLIDFSESPLAKCYRN-WLSLLPNFAF 182 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCC-Ccch---hHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh-hhhhCccHHH
Confidence 3334444555 788888777666655442 4433 45556666778899987777777654421100 0011223557
Q ss_pred HHHHHHHhcCCH---------------HHHHHHHHhh
Q psy10061 224 ALVLVQLARGDT---------------VAAEKAFKEW 245 (325)
Q Consensus 224 ~lg~~~~~~gd~---------------~~A~~~~~~~ 245 (325)
+++++++..++- +.|...++++
T Consensus 183 S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~A 219 (360)
T PF04910_consen 183 SIALAYFRLEKEESSQSSAQSGRSENSESADEALQKA 219 (360)
T ss_pred HHHHHHHHhcCccccccccccccccchhHHHHHHHHH
Confidence 788889888887 8999998885
No 356
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=75.07 E-value=23 Score=24.69 Aligned_cols=13 Identities=31% Similarity=0.486 Sum_probs=5.6
Q ss_pred CCHHHHHHHHHHH
Q psy10061 54 PDYDSAADDYSKA 66 (325)
Q Consensus 54 ~~~~~A~~~y~~a 66 (325)
+++.+|+.+|+++
T Consensus 20 gr~~eAi~~Y~~a 32 (75)
T cd02682 20 GNAEDAITNYKKA 32 (75)
T ss_pred CCHHHHHHHHHHH
Confidence 3444444444443
No 357
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=74.89 E-value=7.2 Score=21.51 Aligned_cols=26 Identities=8% Similarity=0.143 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061 181 YISRAARMCVRVKEFDKAADLIRQEI 206 (325)
Q Consensus 181 ~~~~lg~~~~~~g~~~~A~~~~~~al 206 (325)
+|+.+-..|.+.|++++|.++|.+..
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35566677777788888887777653
No 358
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=74.84 E-value=11 Score=39.37 Aligned_cols=88 Identities=15% Similarity=0.013 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCC
Q psy10061 155 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD 234 (325)
Q Consensus 155 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd 234 (325)
|++|+..|++..+-|..... -.++..++|.....+-.-..--+.|.+||..+..+.+..+.+--|+.-+.+|...||
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (932)
T PRK13184 491 YDQALIFYRRIRESFPGRKE---GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGE 567 (932)
T ss_pred HHHHHHHHHHHhhcCCCccc---chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhh
Confidence 77777777777776654321 135677888776655322222267777887777765443444456778889999999
Q ss_pred HHHHHHHHHhh
Q psy10061 235 TVAAEKAFKEW 245 (325)
Q Consensus 235 ~~~A~~~~~~~ 245 (325)
+++-+++|.-+
T Consensus 568 ~~~~~~~~~~~ 578 (932)
T PRK13184 568 YNEEIKSLLLA 578 (932)
T ss_pred HHHHHHHHHHH
Confidence 99999998876
No 359
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=74.09 E-value=10 Score=26.30 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHH
Q psy10061 32 EEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCF 70 (325)
Q Consensus 32 ~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y 70 (325)
++|+.++.+|.+.=+. ++|++|..+|.++...+
T Consensus 4 ~~A~~l~~~Av~~D~~------g~y~eA~~~Y~~aie~l 36 (75)
T cd02678 4 QKAIELVKKAIEEDNA------GNYEEALRLYQHALEYF 36 (75)
T ss_pred HHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHH
Confidence 4455555555443332 45555555555544443
No 360
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=74.01 E-value=45 Score=32.59 Aligned_cols=94 Identities=15% Similarity=0.097 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHHH
Q psy10061 116 LTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEE---LKSDAALTLYSRAADVAHGE-DNYKQAAEYISRAARMCVR 191 (325)
Q Consensus 116 ~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~---~~~~~A~~~y~~Al~~~~~~-~~~~~~~~~~~~lg~~~~~ 191 (325)
-.|-..+.++.+-++-..|....--.++.+||.+-+. .+-..++..|.+|+...+.. ++.+ ..-|.-+|-.|++
T Consensus 253 ~~e~~~lqq~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~H--vYPYty~gg~~yR 330 (618)
T PF05053_consen 253 SVELAQLQQDLLWLLYDMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHH--VYPYTYLGGYYYR 330 (618)
T ss_dssp EHHHHHHHHHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT----SHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCc--cccceehhhHHHH
Confidence 3466667777888888877655555556666666553 34677799999999877654 2222 2356678999999
Q ss_pred cCCHHHHHHHHHHHHHHHHH
Q psy10061 192 VKEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 192 ~g~~~~A~~~~~~al~~~~~ 211 (325)
.++|.+|+...-++-.+.+.
T Consensus 331 ~~~~~eA~~~Wa~aa~Vi~~ 350 (618)
T PF05053_consen 331 HKRYREALRSWAEAADVIRK 350 (618)
T ss_dssp TT-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999988887766544
No 361
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=73.46 E-value=32 Score=32.40 Aligned_cols=100 Identities=14% Similarity=0.079 Sum_probs=61.0
Q ss_pred ccHHHHHHHHHHHHhhhcccccCCCCCHHHHH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAA-------DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAK 101 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~-------~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~ 101 (325)
++|..|.--|+.|+++..++.+..++.+..+. -.-.++..||...++.+-|+..-.+++.+.... -.
T Consensus 190 k~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~------fr 263 (569)
T PF15015_consen 190 KKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY------FR 263 (569)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch------hh
Confidence 46666666666666666554322122222222 233477899999999999998877766543321 11
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q psy10061 102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQG 134 (325)
Q Consensus 102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g 134 (325)
.+..-+.|++.+.+|.+|....--|.-+|--.|
T Consensus 264 nHLrqAavfR~LeRy~eAarSamia~ymywl~g 296 (569)
T PF15015_consen 264 NHLRQAAVFRRLERYSEAARSAMIADYMYWLSG 296 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 233345567777788888777777766665554
No 362
>KOG0276|consensus
Probab=73.11 E-value=84 Score=31.17 Aligned_cols=80 Identities=11% Similarity=0.008 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------HHHcccHHHHHH---------HHHHHH
Q psy10061 162 YSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY------HQESEHLLAIGR---------LAVALV 226 (325)
Q Consensus 162 y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~~~---------~~~~lg 226 (325)
+.-|.++..+.++. .=+..||.+....+++..|.++|.++.+. +...|+...... -++..-
T Consensus 653 l~iA~~la~e~~s~----~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF 728 (794)
T KOG0276|consen 653 LDIAFDLAVEANSE----VKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAF 728 (794)
T ss_pred HHHHHHHHHhhcch----HHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHH
Confidence 34444554444332 35778999999999999999999987653 222333221111 122334
Q ss_pred HHHHhcCCHHHHHHHHHhh
Q psy10061 227 LVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 227 ~~~~~~gd~~~A~~~~~~~ 245 (325)
.+|+..|++++..+.+.+-
T Consensus 729 ~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHcCCHHHHHHHHHhc
Confidence 5677788888888777765
No 363
>PF12854 PPR_1: PPR repeat
Probab=73.08 E-value=9.1 Score=21.86 Aligned_cols=25 Identities=8% Similarity=-0.031 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10061 101 KHLEQAIMMCKELNDLTDVENLAKQ 125 (325)
Q Consensus 101 ~~~~~~~~~y~~~g~~~eA~~~~~~ 125 (325)
..|+-+...|.+.|+.++|.+.+++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4577777778888888887777654
No 364
>KOG3783|consensus
Probab=73.06 E-value=26 Score=33.84 Aligned_cols=76 Identities=11% Similarity=0.106 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Q psy10061 54 PDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCY-ETNKSAYHAAKHLEQAIMMCKELND-LTDVENLAKQAATL 129 (325)
Q Consensus 54 ~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~-~~~~~~~~aa~~~~~~~~~y~~~g~-~~eA~~~~~~A~~~ 129 (325)
.|.++..-.|--.|.+.+.+|+...+..+|....+-. ....+++-...++..+|.+|.+++. ..++..++.+|-+.
T Consensus 443 ~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 443 DDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence 4666666666666788888888888888887766432 2345667777778888888887777 77888888777554
No 365
>KOG2062|consensus
Probab=72.81 E-value=1.1e+02 Score=31.24 Aligned_cols=160 Identities=13% Similarity=0.161 Sum_probs=75.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHcC-----CHHHH
Q psy10061 66 AATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVEN-LAKQAATLFLEQG-----NREAA 139 (325)
Q Consensus 66 a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~-~~~~A~~~~~~~g-----~~~~a 139 (325)
+..+|..+|+|++|+++-..+...+.-..+.. .+..+ ..+.++ +.+++.+.+...+ |..-.
T Consensus 65 ~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~----y~eti---------vak~id~yi~~~~~~~~~~~~~~~iD~rL~ 131 (929)
T KOG2062|consen 65 ASKVYYYLGEYEDALEYALRAGDDFDVDENSD----YVETI---------VAKCIDMYIETASETYKNPEQKSPIDQRLR 131 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCccc----hhhHH---------HHHHHHHHHHHHHHHhcCccccCCCCHHHH
Confidence 45689999999999999888765554222211 11110 111221 2234444444333 33333
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHH--HHHHHHhc----CCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q psy10061 140 STVLEKGAKSLEELKSDAALTLYS--RAADVAHG----EDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE 213 (325)
Q Consensus 140 a~~l~~lg~~~~~~~~~~A~~~y~--~Al~~~~~----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 213 (325)
.-+..-++..+...++.+++...- +.++++++ .++.......+.++.........+ =.+.+...+..+....
T Consensus 132 ~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~ef--R~~vlr~lv~~y~~~~ 209 (929)
T KOG2062|consen 132 DIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREF--RNKVLRLLVKTYLKLP 209 (929)
T ss_pred HHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHH--HHHHHHHHHHHHccCC
Confidence 333444454544444444433321 22233322 111111112222333222221111 1223334444444443
Q ss_pred cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 214 HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 214 ~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.+ -+++++.||...+|...+.+.+++.
T Consensus 210 ~P-----Dy~~vc~c~v~Ldd~~~va~ll~kL 236 (929)
T KOG2062|consen 210 SP-----DYFSVCQCYVFLDDAEAVADLLEKL 236 (929)
T ss_pred CC-----CeeeeeeeeEEcCCHHHHHHHHHHH
Confidence 33 2467889999999999999998885
No 366
>PRK10941 hypothetical protein; Provisional
Probab=72.77 E-value=38 Score=30.01 Aligned_cols=75 Identities=16% Similarity=0.035 Sum_probs=60.5
Q ss_pred HHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 131 LEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH 209 (325)
Q Consensus 131 ~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 209 (325)
....+..-..+.+.++-.+|...+ ++.|+.+.+..+.+.... ..-++..|.+|.++|.+..|+.-++.-++.+
T Consensus 172 ~~a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~d------p~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 172 DEADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPED------PYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 334455566778888888888887 999999999999887654 2346679999999999999999999888876
Q ss_pred HH
Q psy10061 210 QE 211 (325)
Q Consensus 210 ~~ 211 (325)
++
T Consensus 246 P~ 247 (269)
T PRK10941 246 PE 247 (269)
T ss_pred CC
Confidence 54
No 367
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=72.47 E-value=92 Score=29.78 Aligned_cols=65 Identities=8% Similarity=-0.096 Sum_probs=47.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHHH
Q psy10061 187 RMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLE 258 (325)
Q Consensus 187 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~ 258 (325)
..+..+|+|+++.-+..-...+.++ ..++.-+|.|.+...+|.+|.+++...|.-.+..+.++-.
T Consensus 470 EyLysqgey~kc~~ys~WL~~iaPS-------~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dskvqK 534 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTKIAPS-------PQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSKVQK 534 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCCc-------HHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHHHHH
Confidence 4577889999998877666665432 2356679999999999999999999985544444554443
No 368
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=72.10 E-value=24 Score=24.65 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHH
Q psy10061 33 EGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCF 70 (325)
Q Consensus 33 eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y 70 (325)
.|+++.++|.+.=+. ++|++|..+|..+...+
T Consensus 5 ~Ai~~a~~Ave~D~~------g~y~eA~~~Y~~aie~l 36 (76)
T cd02681 5 DAVQFARLAVQRDQE------GRYSEAVFYYKEAAQLL 36 (76)
T ss_pred HHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHHH
Confidence 345555555544433 55555555555555444
No 369
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=72.05 E-value=12 Score=25.94 Aligned_cols=13 Identities=23% Similarity=0.210 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHh
Q psy10061 31 KEEGMEYVKSAEK 43 (325)
Q Consensus 31 ~~eA~~l~~~A~~ 43 (325)
+++|.++..+|.+
T Consensus 5 ~~~A~~li~~Av~ 17 (77)
T smart00745 5 LSKAKELISKALK 17 (77)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 370
>PF13041 PPR_2: PPR repeat family
Probab=71.67 E-value=9.5 Score=23.71 Aligned_cols=28 Identities=11% Similarity=0.118 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQEIG 207 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~ 207 (325)
.+|+.+-..|.+.|++++|+++|++..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4677888889999999999999988764
No 371
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=71.62 E-value=24 Score=24.55 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHh
Q psy10061 31 KEEGMEYVKSAEK 43 (325)
Q Consensus 31 ~~eA~~l~~~A~~ 43 (325)
|++|.++|.+|..
T Consensus 22 y~eA~~~Y~~~i~ 34 (75)
T cd02677 22 YEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 372
>KOG3364|consensus
Probab=71.59 E-value=42 Score=26.45 Aligned_cols=65 Identities=12% Similarity=0.073 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhccC----HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 140 STVLEKGAKSLEELK----SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 208 (325)
Q Consensus 140 a~~l~~lg~~~~~~~----~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 208 (325)
..+..+++-.+-... ..+.+.+++..+. ...+....+++.-|+.-+.+.|+|++++.+....++.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 345667776666542 6778888877765 2233444578889999999999999999999887775
No 373
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=71.56 E-value=19 Score=24.89 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=14.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 108 MMCKELNDLTDVENLAKQAATLFLE 132 (325)
Q Consensus 108 ~~y~~~g~~~eA~~~~~~A~~~~~~ 132 (325)
.-+-..|++++|+.+|.++++.+..
T Consensus 16 v~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 16 LKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3334456666666666666655443
No 374
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=71.08 E-value=1.2e+02 Score=30.44 Aligned_cols=20 Identities=10% Similarity=-0.022 Sum_probs=14.1
Q ss_pred HHhcCCHHHHHHHHHhhccc
Q psy10061 229 QLARGDTVAAEKAFKEWGNC 248 (325)
Q Consensus 229 ~~~~gd~~~A~~~~~~~~~~ 248 (325)
++..|+++.|++.+++.+.+
T Consensus 515 ~~~~g~~~~AL~~i~~L~li 534 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLI 534 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S
T ss_pred HHHcCCHHHHHHHHHhCCCC
Confidence 35688999999999986433
No 375
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=70.30 E-value=14 Score=25.91 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHH
Q psy10061 33 EGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAA 67 (325)
Q Consensus 33 eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~ 67 (325)
.|+++..+|.+.=+. ++|++|..+|.++.
T Consensus 5 ~a~~l~~~Ave~D~~------g~y~eAl~~Y~~ai 33 (77)
T cd02683 5 AAKEVLKRAVELDQE------GRFQEALVCYQEGI 33 (77)
T ss_pred HHHHHHHHHHHHHHh------ccHHHHHHHHHHHH
Confidence 444455554443332 44444444444433
No 376
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=70.17 E-value=14 Score=25.69 Aligned_cols=11 Identities=27% Similarity=0.311 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q psy10061 32 EEGMEYVKSAE 42 (325)
Q Consensus 32 ~eA~~l~~~A~ 42 (325)
.+|+++..+|.
T Consensus 4 ~~Ai~lv~~Av 14 (75)
T cd02684 4 EKAIALVVQAV 14 (75)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 377
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=69.20 E-value=20 Score=20.93 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q psy10061 181 YISRAARMCVRVKEFDKAADLIR 203 (325)
Q Consensus 181 ~~~~lg~~~~~~g~~~~A~~~~~ 203 (325)
.+..+|..+..+|+|++|+..|+
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 45577888899999999999954
No 378
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=68.27 E-value=1e+02 Score=28.68 Aligned_cols=167 Identities=11% Similarity=0.098 Sum_probs=89.6
Q ss_pred ccHHHHHHHHHHHHhhhcccc--cCCCCCHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHhcCC---h---
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSL--LKWKPDYDSAADDYSKAATCFKGA----KSFQQCKEYLLKAANCYETNKS---A--- 96 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~--~~~~~~~~~A~~~y~~a~~~y~~~----g~~~~A~~~~~~a~~~~~~~~~---~--- 96 (325)
.++++|..+|..+.+.+++.. |...+....-+++-+....+|+.+ ++.+.-...+.+=+++...+-+ +
T Consensus 138 ~~f~dAr~vF~~~~~~l~~A~~yf~ld~~~t~hv~I~qd~S~lYk~LafFE~~~~r~~kmhkRR~d~Le~~~~~Ln~~~y 217 (371)
T PF12309_consen 138 LDFDDAREVFLNGQKWLNKAKEYFVLDGFVTDHVQILQDISELYKYLAFFEEDPDRQIKMHKRRADLLEPLLKELNPQYY 217 (371)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 369999999999988887643 444577777777777777777655 3455555555555555543211 0
Q ss_pred -HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHH
Q psy10061 97 -YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGN------REAASTVLEKGAKSLEELK-SDAALTLYSRAADV 168 (325)
Q Consensus 97 -~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~------~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~ 168 (325)
.-.-..+..+|.+|. ..+++.....+ ...-...+.+ ... ...|+.+|+.-++.
T Consensus 218 ~~~~rql~fElae~~~-------------~i~dlk~~~~~~~~~~~~~~~~~~~~k------in~l~~~ai~~y~~fl~s 278 (371)
T PF12309_consen 218 LNLCRQLWFELAEIYS-------------EIMDLKLEKLDEPQNDNEPPDDHALKK------INQLCSKAIKYYQKFLDS 278 (371)
T ss_pred HHHHHHHHHHHHHHHH-------------HHHHHHHHHhhhhcccCCCCChHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 011122222233322 22222111100 0000000000 011 45667777777776
Q ss_pred HhcC-----------CChhhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHccc
Q psy10061 169 AHGE-----------DNYKQAAEYISRAARMCVRV---------KEFDKAADLIRQEIGYHQESEH 214 (325)
Q Consensus 169 ~~~~-----------~~~~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~~~~~~ 214 (325)
+... +.......++..+|.+|.+. ++..+++.+|+..+..+.....
T Consensus 279 ~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~~~ 344 (371)
T PF12309_consen 279 YKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEKHPE 344 (371)
T ss_pred HcCCccccCCCCCcHHHHHHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 6532 23555566777777776654 4566777777777777766554
No 379
>KOG1915|consensus
Probab=68.14 E-value=1.2e+02 Score=29.31 Aligned_cols=112 Identities=19% Similarity=0.131 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCC
Q psy10061 155 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD 234 (325)
Q Consensus 155 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd 234 (325)
.+.|...|++-+-.... ...+...+..-.+.|+..-|...|++|++.+.. .......+...+.--..+.+
T Consensus 190 ieraR~IYerfV~~HP~-------v~~wikyarFE~k~g~~~~aR~VyerAie~~~~---d~~~e~lfvaFA~fEe~qkE 259 (677)
T KOG1915|consen 190 IERARSIYERFVLVHPK-------VSNWIKYARFEEKHGNVALARSVYERAIEFLGD---DEEAEILFVAFAEFEERQKE 259 (677)
T ss_pred HHHHHHHHHHHheeccc-------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHH
Confidence 44455555544333222 356778888888899999999999999986533 33333444444544455667
Q ss_pred HHHHHHHHHhh-cccCCChHHHHHHHHHHHH--hcCCHHHHHHHhc
Q psy10061 235 TVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF--DEEDPEGARQALN 277 (325)
Q Consensus 235 ~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~--~~gd~~~~~~~~~ 277 (325)
++.|.-.|+=+ +..... ...-|..=..++ .-||...+.+++-
T Consensus 260 ~ERar~iykyAld~~pk~-raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 260 YERARFIYKYALDHIPKG-RAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 77777777665 444333 233343333444 3788888877753
No 380
>KOG1308|consensus
Probab=67.89 E-value=3.7 Score=37.22 Aligned_cols=84 Identities=14% Similarity=0.084 Sum_probs=55.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH
Q psy10061 113 LNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVR 191 (325)
Q Consensus 113 ~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~ 191 (325)
.|.+++|++.+..|+.+ ....+..+.+-+.++.... ...|++-|..|+++-.... .-|-.-|.....
T Consensus 127 ~G~~~~ai~~~t~ai~l------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa------~~ykfrg~A~rl 194 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIEL------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA------KGYKFRGYAERL 194 (377)
T ss_pred Ccchhhhhccccccccc------CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc------cccchhhHHHHH
Confidence 37788888888877765 3344455666777777766 7788888877777654432 223344555566
Q ss_pred cCCHHHHHHHHHHHHHH
Q psy10061 192 VKEFDKAADLIRQEIGY 208 (325)
Q Consensus 192 ~g~~~~A~~~~~~al~~ 208 (325)
+|+|.+|...+..+..+
T Consensus 195 lg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 195 LGNWEEAAHDLALACKL 211 (377)
T ss_pred hhchHHHHHHHHHHHhc
Confidence 78888888777766554
No 381
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=67.69 E-value=19 Score=25.15 Aligned_cols=23 Identities=4% Similarity=0.111 Sum_probs=13.7
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 110 CKELNDLTDVENLAKQAATLFLE 132 (325)
Q Consensus 110 y~~~g~~~eA~~~~~~A~~~~~~ 132 (325)
+-..|++++|+.+|.++++.+..
T Consensus 16 ~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 16 LDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHhccHHHHHHHHHHHHHHHHH
Confidence 33446666666666666665543
No 382
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=67.62 E-value=16 Score=20.12 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061 181 YISRAARMCVRVKEFDKAADLIRQEIG 207 (325)
Q Consensus 181 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 207 (325)
+|+.+...+.+.|+++.|..+|.+..+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566777778888888888887776543
No 383
>KOG1938|consensus
Probab=67.49 E-value=42 Score=34.83 Aligned_cols=56 Identities=9% Similarity=-0.089 Sum_probs=24.4
Q ss_pred HcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy10061 132 EQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAAR 187 (325)
Q Consensus 132 ~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~ 187 (325)
+-....+.+......|..+...+ ...|+.+|.+|+..+...+........+..++.
T Consensus 308 kp~m~~ktffHpVLal~r~s~anqp~ha~R~y~~ai~v~~~~~ws~~edh~~f~i~~ 364 (960)
T KOG1938|consen 308 KPPMPRKTFFHPVLALIRFSSANQPKHALRCYRQAIPVLKKPTWSFAEDHLYFTILH 364 (960)
T ss_pred CCCccchhhcceeehhhhcccCCChhHHHHHHHHHhhhcCCCCcchhHHhHHHhHHH
Confidence 44444444444444444444444 444555555555544444333323333334444
No 384
>KOG0292|consensus
Probab=65.64 E-value=63 Score=33.45 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=30.3
Q ss_pred HHHHHHH--HHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061 155 SDAALTL--YSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQE 205 (325)
Q Consensus 155 ~~~A~~~--y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 205 (325)
++.|+++ ++-|++.....++. +++.+||..-+.+|+.+=|.-+|++.
T Consensus 650 F~LaLe~gnle~ale~akkldd~----d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 650 FELALECGNLEVALEAAKKLDDK----DVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred eeeehhcCCHHHHHHHHHhcCcH----HHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 4555544 34555666665553 57778888888888887777776653
No 385
>KOG2908|consensus
Probab=65.49 E-value=1.1e+02 Score=28.02 Aligned_cols=83 Identities=12% Similarity=0.107 Sum_probs=64.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHH
Q psy10061 68 TCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREA-ASTVLEKG 146 (325)
Q Consensus 68 ~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~-aa~~l~~l 146 (325)
.+..+.++.++|++++.+..+-......+.........++.++...|+..++.+.....-.......+... .-..+..+
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~l 162 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSL 162 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHH
Confidence 34567778999999999999888888888888889999999999999999999988888887777766554 43444444
Q ss_pred HHHH
Q psy10061 147 AKSL 150 (325)
Q Consensus 147 g~~~ 150 (325)
+.-|
T Consensus 163 ssqY 166 (380)
T KOG2908|consen 163 SSQY 166 (380)
T ss_pred HHHH
Confidence 4333
No 386
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=64.13 E-value=22 Score=24.48 Aligned_cols=10 Identities=30% Similarity=0.690 Sum_probs=3.6
Q ss_pred CHHHHHHHHH
Q psy10061 55 DYDSAADDYS 64 (325)
Q Consensus 55 ~~~~A~~~y~ 64 (325)
+|++|..+|.
T Consensus 21 ~~~~Al~~Y~ 30 (75)
T cd02656 21 NYEEALELYK 30 (75)
T ss_pred CHHHHHHHHH
Confidence 3333333333
No 387
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=63.87 E-value=32 Score=23.75 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=14.1
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 110 CKELNDLTDVENLAKQAATLFLE 132 (325)
Q Consensus 110 y~~~g~~~eA~~~~~~A~~~~~~ 132 (325)
.-..|++++|+.+|.+|++.+..
T Consensus 16 ~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 16 EDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHH
Confidence 34446667777777766666543
No 388
>KOG3824|consensus
Probab=62.38 E-value=10 Score=34.06 Aligned_cols=67 Identities=21% Similarity=0.093 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc
Q psy10061 98 HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHG 171 (325)
Q Consensus 98 ~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~ 171 (325)
++..++..++..+. .|+.++|...++.|+.+.-.. ...+..+|...+..+ .-+|-.||-+|+.+...
T Consensus 115 EA~~Al~~A~~~~~-~Gk~ekA~~lfeHAlalaP~~------p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 115 EAILALKAAGRSRK-DGKLEKAMTLFEHALALAPTN------PQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred HHHHHHHHHHHHHh-ccchHHHHHHHHHHHhcCCCC------HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 34445555555544 488888888888887653222 225677777777665 77777888777766543
No 389
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=62.22 E-value=24 Score=24.84 Aligned_cols=17 Identities=12% Similarity=0.069 Sum_probs=7.6
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy10061 193 KEFDKAADLIRQEIGYH 209 (325)
Q Consensus 193 g~~~~A~~~~~~al~~~ 209 (325)
|+.++|+.+|++++...
T Consensus 22 g~~e~Al~~Y~~gi~~l 38 (79)
T cd02679 22 GDKEQALAHYRKGLREL 38 (79)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 390
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=62.10 E-value=1.3e+02 Score=30.95 Aligned_cols=21 Identities=19% Similarity=0.053 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHHHHHHHhccC
Q psy10061 134 GNREAASTVLEKGAKSLEELK 154 (325)
Q Consensus 134 g~~~~aa~~l~~lg~~~~~~~ 154 (325)
+.+..++.+|...|.+-+..+
T Consensus 936 ~~~~~aa~aye~~gK~~Ea~g 956 (1243)
T COG5290 936 LYHISAAKAYEVEGKYIEAHG 956 (1243)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444
No 391
>KOG1308|consensus
Probab=62.05 E-value=4 Score=37.07 Aligned_cols=55 Identities=11% Similarity=-0.023 Sum_probs=43.9
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 71 KGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFL 131 (325)
Q Consensus 71 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~ 131 (325)
...|.++.|++.|..++.+.. ..+..|.+-+.++.+++++..|+.-+..|+++-.
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp------~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~ 179 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNP------PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINP 179 (377)
T ss_pred hcCcchhhhhcccccccccCC------chhhhcccccceeeeccCCchhhhhhhhhhccCc
Confidence 366778888888888765543 4467788889999999999999999999988743
No 392
>KOG0890|consensus
Probab=61.73 E-value=3e+02 Score=32.05 Aligned_cols=108 Identities=16% Similarity=0.069 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---
Q psy10061 57 DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ--- 133 (325)
Q Consensus 57 ~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~--- 133 (325)
...+++|-+.+.+-++.|.++.|-.+..+|.+.. ...++..-+......|+-..|+..+++.++.+...
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~ 1738 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR--------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHT 1738 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccC
Confidence 4567888888888888999988888888776543 34577778888999999999999999998765433
Q ss_pred --------CCHHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHhcC
Q psy10061 134 --------GNREAASTVLEKGAKSLEELK---SDAALTLYSRAADVAHGE 172 (325)
Q Consensus 134 --------g~~~~aa~~l~~lg~~~~~~~---~~~A~~~y~~Al~~~~~~ 172 (325)
.+..--..+...++.+....+ .+.-+++|+++.++..+-
T Consensus 1739 ~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ew 1788 (2382)
T KOG0890|consen 1739 PYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEW 1788 (2382)
T ss_pred CccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccc
Confidence 111111134555666665543 677789999999998854
No 393
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=61.50 E-value=32 Score=23.63 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=15.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 108 MMCKELNDLTDVENLAKQAATLFLE 132 (325)
Q Consensus 108 ~~y~~~g~~~eA~~~~~~A~~~~~~ 132 (325)
.-.-..|++++|+.+|..|++.+..
T Consensus 14 v~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 14 VKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3344456777777777777666544
No 394
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=61.43 E-value=26 Score=32.98 Aligned_cols=63 Identities=10% Similarity=0.068 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 182 ISRAARMCVRVKEFDKAADLIRQEIGYHQES---EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 182 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
+..+..+++-+|+|..|++.++. +++.+.. .-+...-.+++-+|-+|+-+++|.+|.+.|...
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555789999999999998653 3331110 001122235677999999999999999999984
No 395
>KOG0739|consensus
Probab=60.47 E-value=32 Score=31.00 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=17.2
Q ss_pred cHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHH
Q psy10061 30 KKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATC 69 (325)
Q Consensus 30 ~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~ 69 (325)
..++|++|..+|...-+. ++|++|..+|+.+...
T Consensus 6 ~l~kaI~lv~kA~~eD~a------~nY~eA~~lY~~aleY 39 (439)
T KOG0739|consen 6 FLQKAIDLVKKAIDEDNA------KNYEEALRLYQNALEY 39 (439)
T ss_pred HHHHHHHHHHHHhhhcch------hchHHHHHHHHHHHHH
Confidence 345555555555444333 4555555555555443
No 396
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=60.06 E-value=42 Score=29.87 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..++..++..+...|+++.++..+++.+... +... ..+..+-..|...|+...|+..|++.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-----p~~E-~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-----PYDE-PAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-----ccch-HHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 4688899999999999999999999888753 2222 35677889999999999999999995
No 397
>KOG1938|consensus
Probab=60.03 E-value=68 Score=33.39 Aligned_cols=142 Identities=16% Similarity=0.079 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHh-cCCChh
Q psy10061 100 AKHLEQAIMMCKELND-LTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAH-GEDNYK 176 (325)
Q Consensus 100 a~~~~~~~~~y~~~g~-~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~-~~~~~~ 176 (325)
....++..-+|..... +..|-++.--..+++...|.+.+++..+...+ ...+ +..|+-.++.++-.-- .-...+
T Consensus 237 sqyme~a~~~~~~i~k~~~~A~rc~l~~aei~k~~~lh~eaa~~~~r~~---see~dl~~allleqaal~f~~tkp~m~~ 313 (960)
T KOG1938|consen 237 SQYMENAFPLYRLILKNYQDANRCVLNSAEILKFLGLHKEAAEALARET---SEEGDLLSALLLEQAALCFGSTKPPMPR 313 (960)
T ss_pred HHHHhhhhHHHHHHHhhccchhhhccCchHHHHHHHHHHHHHHHHHHhh---CcCchhhhHHHHHHHHHHhhcCCCCccc
Confidence 3444444444443221 23344444444444444454444444333222 1222 6777777777765542 223333
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 177 QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 177 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.......-.|..+-..+....|+..|..++..+...+--....+.++.++..|.-.+ .+.|...+.+.
T Consensus 314 ktffHpVLal~r~s~anqp~ha~R~y~~ai~v~~~~~ws~~edh~~f~i~~~y~l~~-~D~a~~~f~~~ 381 (960)
T KOG1938|consen 314 KTFFHPVLALIRFSSANQPKHALRCYRQAIPVLKKPTWSFAEDHLYFTILHVYLLCQ-EDDADEEFSKL 381 (960)
T ss_pred hhhcceeehhhhcccCCChhHHHHHHHHHhhhcCCCCcchhHHhHHHhHHHhhhhhc-chhHHHHHHHH
Confidence 333344446677777888889999999999998877644445566677777664443 34555555553
No 398
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=59.97 E-value=1.6e+02 Score=27.98 Aligned_cols=113 Identities=12% Similarity=-0.001 Sum_probs=69.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC-----------ChHH-HHHHHHHHHHHHHHcCCHHHHH
Q psy10061 53 KPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNK-----------SAYH-AAKHLEQAIMMCKELNDLTDVE 120 (325)
Q Consensus 53 ~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~-----------~~~~-aa~~~~~~~~~y~~~g~~~eA~ 120 (325)
-+..++=...--+=+.-+..+++|..|+--|..++++..+.. |... +...-..+..||.++++++-|+
T Consensus 169 ~PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlAL 248 (569)
T PF15015_consen 169 LPQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLAL 248 (569)
T ss_pred ChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHH
Confidence 355554443333334445567888888888888888877532 2222 3445667899999999999998
Q ss_pred HHHHHHHH--------------HHHHcCCHHHHHHHHHHHHHHHhccC-----HHHHHHHHHHH
Q psy10061 121 NLAKQAAT--------------LFLEQGNREAASTVLEKGAKSLEELK-----SDAALTLYSRA 165 (325)
Q Consensus 121 ~~~~~A~~--------------~~~~~g~~~~aa~~l~~lg~~~~~~~-----~~~A~~~y~~A 165 (325)
.+--+.+. .++.+..+..|++...-.-.+|--.+ ...-|..|-+|
T Consensus 249 nh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyWqa 312 (569)
T PF15015_consen 249 NHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQA 312 (569)
T ss_pred HHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHHH
Confidence 87666553 35556667777666554444444332 34455555443
No 399
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=59.55 E-value=57 Score=22.70 Aligned_cols=38 Identities=13% Similarity=0.012 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q psy10061 55 DYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN 93 (325)
Q Consensus 55 ~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~ 93 (325)
+.+.|..+..++... -..|+|++|.+.|.++++.+...
T Consensus 2 ~l~kai~Lv~~A~~e-D~~gny~eA~~lY~~ale~~~~e 39 (75)
T cd02680 2 DLERAHFLVTQAFDE-DEKGNAEEAIELYTEAVELCINT 39 (75)
T ss_pred CHHHHHHHHHHHHHh-hHhhhHHHHHHHHHHHHHHHHHh
Confidence 345667777776433 46789999999999999888763
No 400
>KOG0376|consensus
Probab=59.22 E-value=21 Score=33.92 Aligned_cols=87 Identities=13% Similarity=0.007 Sum_probs=54.1
Q ss_pred ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061 27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA 106 (325)
Q Consensus 27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~ 106 (325)
..++|+.|+.+|.||..+-.+-. .+|..=+..+.+.+++..|+.-+.+|+++-. .-+.+|..-
T Consensus 16 ~~~~fd~avdlysKaI~ldpnca-----------~~~anRa~a~lK~e~~~~Al~Da~kaie~dP------~~~K~Y~rr 78 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPNCA-----------IYFANRALAHLKVESFGGALHDALKAIELDP------TYIKAYVRR 78 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCcce-----------eeechhhhhheeechhhhHHHHHHhhhhcCc------hhhheeeec
Confidence 34577778888887776554311 0111112456667777788777777766542 335567777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 107 IMMCKELNDLTDVENLAKQAATLF 130 (325)
Q Consensus 107 ~~~y~~~g~~~eA~~~~~~A~~~~ 130 (325)
|..+...+.+.+|...++....+.
T Consensus 79 g~a~m~l~~~~~A~~~l~~~~~l~ 102 (476)
T KOG0376|consen 79 GTAVMALGEFKKALLDLEKVKKLA 102 (476)
T ss_pred cHHHHhHHHHHHHHHHHHHhhhcC
Confidence 777777777777777777765543
No 401
>PF13041 PPR_2: PPR repeat family
Probab=58.72 E-value=26 Score=21.61 Aligned_cols=27 Identities=11% Similarity=0.035 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061 101 KHLEQAIMMCKELNDLTDVENLAKQAA 127 (325)
Q Consensus 101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~ 127 (325)
..|+-+...|.+.|++++|.+.|++..
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 467777888888888888888888765
No 402
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=58.54 E-value=23 Score=30.96 Aligned_cols=43 Identities=16% Similarity=0.122 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061 79 CKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAA 127 (325)
Q Consensus 79 A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~ 127 (325)
|..+|.+|..+....|+ .|+++|.++...|+.=+|+-+|-+++
T Consensus 1 A~~~Y~~A~~l~P~~G~------p~nQLAvl~~~~~~~l~avy~y~Rsl 43 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGN------PYNQLAVLASYQGDDLDAVYYYIRSL 43 (278)
T ss_dssp HHHHHHHHHHH-TTBSH------HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCC------cccchhhhhccccchHHHHHHHHHHH
Confidence 45677777777776653 66777777777777777777776665
No 403
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=58.34 E-value=85 Score=24.30 Aligned_cols=62 Identities=11% Similarity=0.033 Sum_probs=42.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc----------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 183 SRAARMCVRVKEFDKAADLIRQEIGYHQESEH----------LLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 183 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..+|....+.+++-.++-+|++|+.+..++.. ...+ ..-.|++.-+..+||.+=.++|++-+
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~V-isCHNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISV-ISCHNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHH-HHHhhHHHHHHHcCChHHHHHHHHHH
Confidence 34667777778888888888888887766531 0111 12356777788889988888888875
No 404
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=56.45 E-value=39 Score=23.43 Aligned_cols=34 Identities=9% Similarity=-0.064 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy10061 57 DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYE 91 (325)
Q Consensus 57 ~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~ 91 (325)
+.|.++..+| .-.-..|++++|..+|..+++.+.
T Consensus 4 ~~Ai~lv~~A-v~~D~~g~y~eA~~lY~~ale~~~ 37 (75)
T cd02684 4 EKAIALVVQA-VKKDQRGDAAAALSLYCSALQYFV 37 (75)
T ss_pred HHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHH
Confidence 3444444443 222345555555555555555544
No 405
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=56.41 E-value=43 Score=23.23 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=9.6
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy10061 114 NDLTDVENLAKQAATLFL 131 (325)
Q Consensus 114 g~~~eA~~~~~~A~~~~~ 131 (325)
|++++|..+|..+++.+.
T Consensus 20 ~~y~eA~~~Y~~~i~~~~ 37 (75)
T cd02677 20 GDYEAAFEFYRAGVDLLL 37 (75)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 455555555555555443
No 406
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=56.25 E-value=1e+02 Score=24.66 Aligned_cols=108 Identities=16% Similarity=0.132 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHH
Q psy10061 181 YISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEK 259 (325)
Q Consensus 181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~ 259 (325)
.+..+..+-...++.+++..++...--+.++.. ..-.--|.++...|++.+|...|++. ..-..+.-++.|..
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~------e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A 85 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLK------ELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLA 85 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcc------ccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHH
Confidence 444455555557777777766543322222211 12234677788888888888888886 22223333444432
Q ss_pred HHHHHhcCCHHHHHHHhcChhhhcccHHHHHHhhcCC
Q psy10061 260 LLQAFDEEDPEGARQALNDPFIKHMDVEYSRLARDLP 296 (325)
Q Consensus 260 L~~a~~~gd~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 296 (325)
++- +..||++ .+.+-..-+-..-+++.+.|++.|.
T Consensus 86 ~CL-~al~Dp~-Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 86 LCL-NAKGDAE-WHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHH-HhcCChH-HHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 211 2345543 1111111223344566666666665
No 407
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.25 E-value=1.2e+02 Score=25.25 Aligned_cols=163 Identities=12% Similarity=0.037 Sum_probs=95.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHH
Q psy10061 110 CKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGE--DNYKQAAEYISRAAR 187 (325)
Q Consensus 110 y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~--~~~~~~~~~~~~lg~ 187 (325)
|...++-+++-+.|..|+++....+. ++|+..+... +.. +.+. .-+..+.+.
T Consensus 49 yw~~s~as~sgd~flaAL~lA~~~k~--------------------d~Alaaf~~l----ektg~g~Yp--vLA~mr~at 102 (221)
T COG4649 49 YWQTSRASKSGDAFLAALKLAQENKT--------------------DDALAAFTDL----EKTGYGSYP--VLARMRAAT 102 (221)
T ss_pred hhcccccccchHHHHHHHHHHHcCCc--------------------hHHHHHHHHH----HhcCCCcch--HHHHHHHHH
Confidence 44555556666666666666555443 3444433221 222 2333 235678899
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHHHH-Hhc
Q psy10061 188 MCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQA-FDE 266 (325)
Q Consensus 188 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a-~~~ 266 (325)
+..+.|+...|+..|.+.-.... +.. .....+.+..+.++...|-|++-....+....-.+......-..|+-+ ++.
T Consensus 103 ~~a~kgdta~AV~aFdeia~dt~-~P~-~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~ka 180 (221)
T COG4649 103 LLAQKGDTAAAVAAFDEIAADTS-IPQ-IGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKA 180 (221)
T ss_pred HHhhcccHHHHHHHHHHHhccCC-Ccc-hhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhc
Confidence 99999999999999987654321 111 122334566777788899999888877775111122223344556554 689
Q ss_pred CCHHHHHHHhcC----hhhhcccHHHHHHhhcCCCCCC
Q psy10061 267 EDPEGARQALND----PFIKHMDVEYSRLARDLPLPSA 300 (325)
Q Consensus 267 gd~~~~~~~~~~----~~~~~l~~~~~~~~~~l~~~~~ 300 (325)
||...+...+.. ....+--.+-..|.++|...++
T Consensus 181 gd~a~A~~~F~qia~Da~aprnirqRAq~mldlI~s~g 218 (221)
T COG4649 181 GDFAKAKSWFVQIANDAQAPRNIRQRAQIMLDLIDSSG 218 (221)
T ss_pred cchHHHHHHHHHHHccccCcHHHHHHHHHHHHHHhccc
Confidence 999999887665 1111112344556666665544
No 408
>KOG0276|consensus
Probab=56.00 E-value=29 Score=34.18 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy10061 63 YSKAATCFKGAKSFQQCKEYLLKAAN 88 (325)
Q Consensus 63 y~~a~~~y~~~g~~~~A~~~~~~a~~ 88 (325)
+.++|.+....+++..|.+||.++-+
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhcc
Confidence 45566666666666666666666543
No 409
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=55.45 E-value=1.7e+02 Score=26.90 Aligned_cols=25 Identities=16% Similarity=0.007 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 221 LAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 221 ~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
+++..|......+++.+|+..++.+
T Consensus 255 A~~~~a~~~~~~~k~GeaIa~L~~A 279 (346)
T cd09247 255 SQLYLARRLKEAGHIGVAVGVLREA 279 (346)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHH
Confidence 3344455555555555555555543
No 410
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=54.89 E-value=1.7e+02 Score=26.84 Aligned_cols=37 Identities=22% Similarity=0.221 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHH
Q psy10061 96 AYHAAKHLEQAIMMCKELND---------LTDVENLAKQAATLFLE 132 (325)
Q Consensus 96 ~~~aa~~~~~~~~~y~~~g~---------~~eA~~~~~~A~~~~~~ 132 (325)
..+.+.++.|+|-++...+- ..+|..++++|.-++.-
T Consensus 115 ~fEka~vlfNiaal~s~la~~~~~~~~eglK~A~~~fq~AAG~F~~ 160 (346)
T cd09240 115 GYEKVCVLFNIAALQSQIAAEQNLDTDEGLKLAAKLFQQAAGIFNH 160 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH
Confidence 34556667777766654431 46678888888776643
No 411
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=54.29 E-value=1.7e+02 Score=26.45 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..+...+..|...|.+.+|+++.++++.+.+= .. ..+..+-.++..+||--.+...|+++
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL-----~e-~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPL-----SE-QDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChh-----hh-HHHHHHHHHHHHhccchhhhhHHHHH
Confidence 45566777899999999999999999886321 11 23445677888899999999998886
No 412
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=53.60 E-value=99 Score=24.12 Aligned_cols=24 Identities=13% Similarity=0.019 Sum_probs=14.0
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhc
Q psy10061 70 FKGAKSFQQCKEYLLKAANCYETN 93 (325)
Q Consensus 70 y~~~g~~~~A~~~~~~a~~~~~~~ 93 (325)
....+++.+......++.+++..+
T Consensus 41 aie~~~i~~k~~~i~ka~~Ii~eL 64 (132)
T COG1516 41 AIEQEDIEEKNESIDKAIDIITEL 64 (132)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666665543
No 413
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=53.18 E-value=51 Score=29.07 Aligned_cols=91 Identities=16% Similarity=0.099 Sum_probs=52.6
Q ss_pred hhchhccccc--cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC
Q psy10061 18 EKHSLSTMTS--DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKS 95 (325)
Q Consensus 18 e~~~~~~~~~--~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~ 95 (325)
|+..++|..+ +-.+..|.++..+|+-..+. .+|-....-+-.+-+..|....+|+-|..||..|...+.+-.-
T Consensus 40 Ek~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~-----r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L 114 (368)
T COG5091 40 EKLYFGFSDWHSDATMENAKELLDKALMTAEG-----RGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDTL 114 (368)
T ss_pred HHHHhhhhhhhcccChhhHHHHHHHHHHhhhc-----cCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcccc
Confidence 4444455433 34688899999999876654 2333333333334456677788888888888888887765433
Q ss_pred hHHHHHHHHHHHHHHHHc
Q psy10061 96 AYHAAKHLEQAIMMCKEL 113 (325)
Q Consensus 96 ~~~aa~~~~~~~~~y~~~ 113 (325)
+...-+.-..+-....++
T Consensus 115 ~~We~rLet~L~~~~kkQ 132 (368)
T COG5091 115 PLWEDRLETKLNKKNKKQ 132 (368)
T ss_pred hHHHHHHHHHHhHhhHhh
Confidence 333333333333334433
No 414
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=52.62 E-value=2.2e+02 Score=28.49 Aligned_cols=100 Identities=15% Similarity=0.196 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHhccCH--------HHHHHHHHHHHHH
Q psy10061 98 HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEK-GAKSLEELKS--------DAALTLYSRAADV 168 (325)
Q Consensus 98 ~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~-lg~~~~~~~~--------~~A~~~y~~Al~~ 168 (325)
..-.....+|.-....|++.+|+.+|.-| |+++.+...++. |+.+...... +.-+..-.+.++.
T Consensus 412 ~~~~i~~~~A~~~e~~g~~~dAi~Ly~La-------~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~ 484 (613)
T PF04097_consen 412 FLREIIEQAAREAEERGRFEDAILLYHLA-------EEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILER 484 (613)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHT-------T-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHH
Confidence 34555666677777778777776665544 566766666554 3444432211 2222222333334
Q ss_pred HhcCCC--------hhhHHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q psy10061 169 AHGEDN--------YKQAAEYISRAARM--CVRVKEFDKAADLIRQ 204 (325)
Q Consensus 169 ~~~~~~--------~~~~~~~~~~lg~~--~~~~g~~~~A~~~~~~ 204 (325)
+..... .......+..+..+ ++..|+|++|++.+++
T Consensus 485 y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~ 530 (613)
T PF04097_consen 485 YKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEK 530 (613)
T ss_dssp HTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 433211 12223445555544 5577899988887654
No 415
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=51.84 E-value=1e+02 Score=23.27 Aligned_cols=96 Identities=11% Similarity=0.017 Sum_probs=48.9
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHH
Q psy10061 70 FKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKEL----NDLTDVENLAKQAATLFLEQGN-REAASTVLE 144 (325)
Q Consensus 70 y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~----g~~~eA~~~~~~A~~~~~~~g~-~~~aa~~l~ 144 (325)
+...||+-+|++..+.....+.+-.+.+ -.+..-|.++.++ .+++-=..++..+++.+.+.-. ....|..+.
T Consensus 6 ~~~rGnhiKAL~iied~i~~h~~~~~~~---~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 6 YFARGNHIKALEIIEDLISRHGEDESSW---LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHccCHHHHHHHHHHHHHHccCCCchH---HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 4455666666666666555444333211 2333334443322 2344333444445554444321 234477788
Q ss_pred HHHHHHhccC-HHHHHHHHHHHHHH
Q psy10061 145 KGAKSLEELK-SDAALTLYSRAADV 168 (325)
Q Consensus 145 ~lg~~~~~~~-~~~A~~~y~~Al~~ 168 (325)
.+|.-+.... |.+++.-.++++.+
T Consensus 83 ~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 83 ELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 8877665544 77777766666643
No 416
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=51.77 E-value=1.4e+02 Score=24.99 Aligned_cols=63 Identities=17% Similarity=0.076 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 183 SRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 183 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
...+......|+.++|...++++.+...++......-.-++..|-|--.+..|.+|.-.+.=.
T Consensus 33 s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l 95 (204)
T COG2178 33 SGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSIL 95 (204)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 344445566788999998888888877666532221122334566666666777777766653
No 417
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=51.69 E-value=2.2e+02 Score=26.96 Aligned_cols=33 Identities=12% Similarity=0.078 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 211 (325)
..++..+|-.|..+++|.+|+..|...+....+
T Consensus 164 is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r 196 (404)
T PF10255_consen 164 ISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR 196 (404)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778999999999999999999888765444
No 418
>KOG2053|consensus
Probab=51.37 E-value=2.1e+02 Score=29.76 Aligned_cols=51 Identities=10% Similarity=0.038 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHH
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVA 237 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~ 237 (325)
.++.-+-.+|..++++++|+.+|++++..++. .+.+..+-.+|.+.++|.+
T Consensus 78 ~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-------eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 78 LTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-------EELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-------HHHHHHHHHHHHHHHHHHH
Confidence 35556666777777777777777766654322 1233344455555555444
No 419
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=50.46 E-value=53 Score=21.81 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=23.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy10061 188 MCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKA 241 (325)
Q Consensus 188 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~ 241 (325)
-+...|+|=+|.+.++..=...+.......++-+....+..++..|+...|...
T Consensus 8 ~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 8 ELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 344556666666555543321111111222333444455555566666665543
No 420
>KOG4014|consensus
Probab=50.39 E-value=83 Score=26.29 Aligned_cols=90 Identities=13% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHcCCHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC------HHHHHHHHHHHHHHHhcCCChhhHHH
Q psy10061 108 MMCKELNDLTDVE-NLAKQAATLFLEQGNREAASTVLEKGAKSLEELK------SDAALTLYSRAADVAHGEDNYKQAAE 180 (325)
Q Consensus 108 ~~y~~~g~~~eA~-~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~------~~~A~~~y~~Al~~~~~~~~~~~~~~ 180 (325)
+.+..+|+|-++| .-++.|..++..+=+-.+-.....+.|..+.... +..|+++|..+.+ .....
T Consensus 35 e~C~lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--------~n~~~ 106 (248)
T KOG4014|consen 35 ESCQLLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--------ANIPQ 106 (248)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--------cCCHH
Q ss_pred HHHHHHHHHHHcC-------CHHHHHHHHHHH
Q psy10061 181 YISRAARMCVRVK-------EFDKAADLIRQE 205 (325)
Q Consensus 181 ~~~~lg~~~~~~g-------~~~~A~~~~~~a 205 (325)
+.+.+|.++..-. +.++|.++++++
T Consensus 107 aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~tra 138 (248)
T KOG4014|consen 107 ACRYLGLLHWNGEKDRKADPDSEKAERYMTRA 138 (248)
T ss_pred HHhhhhhhhccCcCCccCCCCcHHHHHHHHHh
No 421
>KOG4422|consensus
Probab=49.45 E-value=2.4e+02 Score=26.93 Aligned_cols=61 Identities=15% Similarity=0.185 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhh----cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 218 IGRLAVALVLVQLARGDTVAAEKAFKEW----GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 218 ~~~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
.+..+..++.++...|++++|.+.|.-+ +....+.-..++..|.++. ...++.++..+++=
T Consensus 521 ~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~ 586 (625)
T KOG4422|consen 521 PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQL 586 (625)
T ss_pred ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3455677888889999999999999886 3334555555677777764 68999999988864
No 422
>KOG1497|consensus
Probab=47.44 E-value=2.3e+02 Score=25.96 Aligned_cols=108 Identities=15% Similarity=0.045 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q psy10061 137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAH--GEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE 213 (325)
Q Consensus 137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 213 (325)
+.++.+...++.+|+..+ +..|...+. ++..-. ...+...-...+.++|.+|.+.++..+|..+..++--+.....
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~ 178 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESS 178 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccc
Confidence 455566667788887665 555544331 111111 0112223345677899999999999998888777644333333
Q ss_pred cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 214 HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 214 ~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
+....-.+-..-+.+.-..+.+-+|...|.+.
T Consensus 179 Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyel 210 (399)
T KOG1497|consen 179 NEQLQIEYKVCYARVLDYKRKFLEAAQRYYEL 210 (399)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222222223344444456666666655553
No 423
>KOG4521|consensus
Probab=47.40 E-value=82 Score=33.67 Aligned_cols=123 Identities=16% Similarity=0.058 Sum_probs=60.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHc-------------------CCH----HHHHHHHHHHHHHHhccC-HHHHHHH
Q psy10061 106 AIMMCKELNDLTDVENLAKQAATLFLEQ-------------------GNR----EAASTVLEKGAKSLEELK-SDAALTL 161 (325)
Q Consensus 106 ~~~~y~~~g~~~eA~~~~~~A~~~~~~~-------------------g~~----~~aa~~l~~lg~~~~~~~-~~~A~~~ 161 (325)
+|.+|...|...+|++++.+|..-..+. |+. ..+...|.+.-.+++..+ .+.+++.
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQl 1005 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQL 1005 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 4666778889999999999987532221 111 111222333333333333 3333333
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHH
Q psy10061 162 YSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVA 237 (325)
Q Consensus 162 y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~ 237 (325)
-.+|++..... ....+.+...+=.-+..+|.|-+|.....+ +.+-..+-.++..+..+++..|..+.
T Consensus 1006 A~~AIe~l~dd--~ps~a~~~t~vFnhhldlgh~~qAy~ai~~-------npdserrrdcLRqlvivLfecg~l~~ 1072 (1480)
T KOG4521|consen 1006 AVKAIENLPDD--NPSVALISTTVFNHHLDLGHWFQAYKAILR-------NPDSERRRDCLRQLVIVLFECGELEA 1072 (1480)
T ss_pred HHHHHHhCCCc--chhHHHHHHHHHHhhhchhhHHHHHHHHHc-------CCcHHHHHHHHHHHHHHHHhccchHH
Confidence 33333332221 122223334444455666777666554322 22222333466677777777766543
No 424
>KOG3824|consensus
Probab=45.47 E-value=65 Score=29.18 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 138 AASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 138 ~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 210 (325)
.+..+++..+..+...+.++|...++.|+.+.... .+++..+|.+.-..++.-+|=.+|.++|.+.+
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~------p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTN------PQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCC------HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 34445555566665556888899999998887654 35777888888777888888888888887643
No 425
>KOG1997|consensus
Probab=44.99 E-value=4.3e+02 Score=29.32 Aligned_cols=35 Identities=14% Similarity=0.065 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy10061 55 DYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANC 89 (325)
Q Consensus 55 ~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~ 89 (325)
..+--...+...+.++.+.|++.+|..|+..+..+
T Consensus 1074 ~p~Lr~twl~~ma~~h~~~~~~~eaa~c~~~~aal 1108 (1518)
T KOG1997|consen 1074 SPDLRITWLLSMAEIHEKNGNFAEAAQCYVHAAAL 1108 (1518)
T ss_pred ChHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHH
Confidence 33444555666667777778888888887766543
No 426
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=44.08 E-value=51 Score=18.22 Aligned_cols=13 Identities=38% Similarity=0.376 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHH
Q psy10061 115 DLTDVENLAKQAA 127 (325)
Q Consensus 115 ~~~eA~~~~~~A~ 127 (325)
++.+|+.++++|.
T Consensus 20 d~~~A~~~~~~Aa 32 (36)
T smart00671 20 DLEKALEYYKKAA 32 (36)
T ss_pred CHHHHHHHHHHHH
Confidence 4555555555554
No 427
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=43.93 E-value=1.7e+02 Score=23.65 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..+..+..+-...++.+++..++. ++.+.+- . ....-..-|.+++..|++.+|...|++.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~-ALrvLRP----~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLD-ALRVLRP----E-FPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHH-HHHHhCC----C-chHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345555566666666666666654 3332211 1 1122334567777777777777777776
No 428
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=43.69 E-value=1.2e+02 Score=25.62 Aligned_cols=107 Identities=11% Similarity=0.135 Sum_probs=64.2
Q ss_pred HHHHHhhchhccccccccHHHHHHHHHH-HHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy10061 13 YVKSAEKHSLSTMTSDRKKEEGMEYVKS-AEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYE 91 (325)
Q Consensus 13 ~~~~ae~~~~~~~~~~~~~~eA~~l~~~-A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~ 91 (325)
..-+.|+..-+|-.+..+++++..-+.. +-...++-...|+++|.....+|..++.++..-+..... -+..|
T Consensus 6 d~~~Ve~kid~f~~F~k~MD~svk~l~~~~~e~~kk~~~~~kkEyqkiG~af~~LsqaFe~d~~~~s~--~L~~A----- 78 (207)
T cd07669 6 DLQDVEERVDVFKAFSKKMDDSVLQLSNVASELVRKHLGGFRKEFQKLGNAFQAISHSFQLDPPYSSE--ALNNA----- 78 (207)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhcCCCccch--HHHHH-----
Confidence 4455666555665555556666554443 555555544556889999999999999988766644322 22222
Q ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 92 TNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLE 132 (325)
Q Consensus 92 ~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~ 132 (325)
...++.+|..+|.++..+-+.+ ..-+...+.+|+.
T Consensus 79 ----v~~tG~~y~~IG~~faeQpk~D--~~pl~d~L~~Y~G 113 (207)
T cd07669 79 ----ISHTGRTYEAVGEMFAEQPKND--LFQMLDTLSLYQG 113 (207)
T ss_pred ----HHHHHHHHHHHHHHHHhcchhh--hhHHHHHHHHHhC
Confidence 2345678888888888765433 2233444444444
No 429
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=43.35 E-value=1.2e+02 Score=21.71 Aligned_cols=31 Identities=10% Similarity=0.133 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 210 (325)
.+...++..+...|++++|++.+.+.+...+
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 5778899999999999999999877766543
No 430
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=42.79 E-value=1.3e+02 Score=25.32 Aligned_cols=75 Identities=13% Similarity=0.185 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHHH-hhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy10061 30 KKEEGMEYVKSAE-KHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIM 108 (325)
Q Consensus 30 ~~~eA~~l~~~A~-~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~ 108 (325)
.++++..-+..-. ...++-...|+++|..-+..|..++.+|..-+.... ..+.+| ....+.+|.++|.
T Consensus 15 ~md~svk~l~~~~~~~~kk~~~~~kkeyqk~G~af~~L~~af~~d~~~~~--t~Ls~A---------l~~~g~~~e~Ig~ 83 (199)
T cd07626 15 SMDDSVKNLINIAQEQAKKHQGPYKKEYQKIGQAFTSLGTAFELDETPTS--VPLTQA---------IKHTGQAYEEIGE 83 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCccc--hHHHHH---------HHHHHHHHHHHHH
Confidence 4555555444432 223332223467888888888888888865544111 112222 2345677888888
Q ss_pred HHHHcCC
Q psy10061 109 MCKELND 115 (325)
Q Consensus 109 ~y~~~g~ 115 (325)
+|..+-+
T Consensus 84 l~~eQa~ 90 (199)
T cd07626 84 LFAEQPK 90 (199)
T ss_pred HHHHhhH
Confidence 8877654
No 431
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=42.58 E-value=1.2e+02 Score=25.56 Aligned_cols=92 Identities=12% Similarity=0.114 Sum_probs=57.8
Q ss_pred HHHHHhhchhccccccccHHHHHHH-HHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy10061 13 YVKSAEKHSLSTMTSDRKKEEGMEY-VKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYE 91 (325)
Q Consensus 13 ~~~~ae~~~~~~~~~~~~~~eA~~l-~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~ 91 (325)
..-+.|...-+|..+...++++..- ..-+-...++-...|+++|....+.|..++.+|..-+..... .+..|
T Consensus 6 d~~~VE~kid~f~~F~k~Md~sv~~l~~~~~e~~kk~~~~~KkEyqkiG~af~~LsqaF~~d~~~~s~--~L~~A----- 78 (207)
T cd07670 6 DLQDVESRIDGFKAFTKKMDESVLQLNHTANEFARKQVTGFKKEYQKVGQSFKGLSQAFELDQQAFSA--GLNQA----- 78 (207)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHccCCcccch--HHHHH-----
Confidence 3445566555665555556665544 444555555545557899999999999999988766533222 22332
Q ss_pred hcCChHHHHHHHHHHHHHHHHcCC
Q psy10061 92 TNKSAYHAAKHLEQAIMMCKELND 115 (325)
Q Consensus 92 ~~~~~~~aa~~~~~~~~~y~~~g~ 115 (325)
...++.+|..+|..+.++-+
T Consensus 79 ----v~~tg~~y~~IG~~faeQpk 98 (207)
T cd07670 79 ----IAFTGEAYEAIGELFAEQPR 98 (207)
T ss_pred ----HHHHHHHHHHHHHHHHhcch
Confidence 23456788888888887654
No 432
>KOG1953|consensus
Probab=42.13 E-value=15 Score=38.10 Aligned_cols=54 Identities=9% Similarity=0.001 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Q psy10061 179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLAR 232 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~ 232 (325)
..+...+|..+.-.|++..|+++|..|+++....+++.+.+-++.....|.+.+
T Consensus 245 GR~~Kq~gdy~LLAGrpvdAl~~fs~AIe~lk~t~DyLWlg~AldG~tVC~Ll~ 298 (1235)
T KOG1953|consen 245 GRIEKQFGDYYLLAGRPVDALKHFSTAIELLKATGDYLWLGLALDGFTVCLLLM 298 (1235)
T ss_pred HHHHHhhcceeeecCCchHHHHHHHHHHHHHHhhhhheeehhhccchhHHHHHH
Confidence 456678889999999999999999999999999999988888877766666553
No 433
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=42.11 E-value=2.3e+02 Score=24.48 Aligned_cols=51 Identities=18% Similarity=0.084 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHH-cc--cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 195 FDKAADLIRQEIGYHQE-SE--HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 195 ~~~A~~~~~~al~~~~~-~~--~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.++|...|++|++++.. +. ++...+-+++-..-.|-..|+..+|.+.-+++
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~a 195 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQA 195 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 36789999999999887 43 45556655444444445689999998887774
No 434
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=41.51 E-value=1.9e+02 Score=23.42 Aligned_cols=86 Identities=21% Similarity=0.096 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHH
Q psy10061 140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI 218 (325)
Q Consensus 140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 218 (325)
...+..+..+-...+ .+.+...+ .|+...+-. ..+.-.--|.+++..|+|.+|+.+|+...+- ..+.+ .
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL-~ALrvLRP~-----~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p--~ 79 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALL-DALRVLRPE-----FPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFP--Y 79 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHH-HHHHHhCCC-----chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCh--H
Confidence 334444444444444 55544444 444444322 2234455789999999999999999885332 11222 2
Q ss_pred HHHHHHHHHHHHhcCCHHH
Q psy10061 219 GRLAVALVLVQLARGDTVA 237 (325)
Q Consensus 219 ~~~~~~lg~~~~~~gd~~~ 237 (325)
+.++ ++.|+..+||+..
T Consensus 80 ~kAL--lA~CL~~~~D~~W 96 (160)
T PF09613_consen 80 AKAL--LALCLYALGDPSW 96 (160)
T ss_pred HHHH--HHHHHHHcCChHH
Confidence 2332 6778888888543
No 435
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=41.43 E-value=2.9e+02 Score=25.49 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHH
Q psy10061 97 YHAAKHLEQAIMMCKELN---------DLTDVENLAKQAATLFL 131 (325)
Q Consensus 97 ~~aa~~~~~~~~~y~~~g---------~~~eA~~~~~~A~~~~~ 131 (325)
.+.+.++.|+|-+|...+ ...+|..++++|..++.
T Consensus 104 fE~a~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AAg~f~ 147 (377)
T PF03097_consen 104 FEKACVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAAGIFQ 147 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHH
Confidence 455666666666655432 35567777777776654
No 436
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=41.29 E-value=2.6e+02 Score=24.94 Aligned_cols=43 Identities=23% Similarity=0.280 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhc-cC---HHHHHHHHHHHH
Q psy10061 124 KQAATLFLEQGNREAASTVLEKGAKSLEE-LK---SDAALTLYSRAA 166 (325)
Q Consensus 124 ~~A~~~~~~~g~~~~aa~~l~~lg~~~~~-~~---~~~A~~~y~~Al 166 (325)
...+..|...|+...+...|.++..+... .+ ..+....|.+++
T Consensus 191 ~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~~ 237 (280)
T COG3629 191 LRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEIL 237 (280)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHh
Confidence 33444555555555555555555554332 23 456666777663
No 437
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=40.73 E-value=3.1e+02 Score=25.59 Aligned_cols=50 Identities=8% Similarity=-0.053 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHH-----------cccHHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHhh
Q psy10061 196 DKAADLIRQEIGYHQE-----------SEHLLAIGRLAVALVLVQLAR---------GDTVAAEKAFKEW 245 (325)
Q Consensus 196 ~~A~~~~~~al~~~~~-----------~~~~~~~~~~~~~lg~~~~~~---------gd~~~A~~~~~~~ 245 (325)
..|+.+|+.-+..+.. .......-.+++.+|.+|... +....++++|+..
T Consensus 266 ~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~v 335 (371)
T PF12309_consen 266 SKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWV 335 (371)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHH
Confidence 3455555555555431 123333335667778877553 8888888888885
No 438
>KOG4563|consensus
Probab=40.12 E-value=1.5e+02 Score=27.49 Aligned_cols=65 Identities=15% Similarity=0.073 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc-c-HHHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy10061 177 QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE-H-LLAIGRLAVALVLVQLARGDTVAAEKA 241 (325)
Q Consensus 177 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~-~~~~~~~~~~lg~~~~~~gd~~~A~~~ 241 (325)
....-+...|.-++.++++++|...|..|..++.++- . ...-...++-.|..++..++.....-.
T Consensus 39 ~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 39 KTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445677888889999999999999999999887763 2 223344556677777777666655443
No 439
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=39.70 E-value=1.5e+02 Score=25.09 Aligned_cols=106 Identities=13% Similarity=0.127 Sum_probs=61.6
Q ss_pred HHHHhhchhccccccccHHHHHHHHHH-HHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy10061 14 VKSAEKHSLSTMTSDRKKEEGMEYVKS-AEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYET 92 (325)
Q Consensus 14 ~~~ae~~~~~~~~~~~~~~eA~~l~~~-A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~ 92 (325)
..+.|...-+|-.+..+++++..-+.. +-...++-...|+++|......|..++..|..-+..... -+.+|
T Consensus 7 ~~~VE~kid~f~~F~k~MD~svk~l~~~~~e~~kk~~~~~KkEyqkiG~af~~LsqaFe~d~~~~~~--~L~~A------ 78 (210)
T cd07668 7 LVEIEQKCEAVGRFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSTSGYQGET--DLNDA------ 78 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhcCCcccch--HHHHH------
Confidence 344555445555555556666554444 555555544556889999999999999888655532222 12222
Q ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 93 NKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLE 132 (325)
Q Consensus 93 ~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~ 132 (325)
...++.+|..+|.++..+-+.| +.-+-..+.+|+-
T Consensus 79 ---i~~tg~~y~~IG~~faeQpk~D--l~pl~d~L~~Y~G 113 (210)
T cd07668 79 ---ITEAGKTYEEIASLVAEQPKKD--LHFLMETNHEYKG 113 (210)
T ss_pred ---HHHHHHHHHHHHHHHHhcchhh--hHHHHHHHHHHhC
Confidence 2345678888888888765433 2333344444443
No 440
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=39.58 E-value=3.9e+02 Score=26.45 Aligned_cols=96 Identities=15% Similarity=-0.062 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 55 DYDSAADDYSKAATCFKGAKS---FQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFL 131 (325)
Q Consensus 55 ~~~~A~~~y~~a~~~y~~~g~---~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~ 131 (325)
|-.+.+.+-+++.-+....|. |.-|+-.+-..-++....| -..++..|.+|+...+
T Consensus 252 d~~e~~~lqq~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~---------------------r~~~~~l~~~AI~sa~ 310 (618)
T PF05053_consen 252 DSVELAQLQQDLLWLLYDMGHLARYPMALGNLADLEEIDPTPG---------------------RPTPLELFNEAISSAR 310 (618)
T ss_dssp EEHHHHHHHHHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TT---------------------S--HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhcCchhhCchhhhhhHhHHhhccCCC---------------------CCCHHHHHHHHHHHHH
Confidence 445556666666655554443 4444444444333333222 2345666666666544
Q ss_pred HcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC
Q psy10061 132 EQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE 172 (325)
Q Consensus 132 ~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~ 172 (325)
.-=+-.. .-=|.-+|..|...+ |.+|+.++-+|.+..+.-
T Consensus 311 ~~Y~n~H-vYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~Y 351 (618)
T PF05053_consen 311 TYYNNHH-VYPYTYLGGYYYRHKRYREALRSWAEAADVIRKY 351 (618)
T ss_dssp HHCTT---SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTS
T ss_pred HHhcCCc-cccceehhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4321111 111334444444443 777777777777766553
No 441
>KOG0591|consensus
Probab=39.33 E-value=2.3e+02 Score=25.55 Aligned_cols=43 Identities=21% Similarity=0.145 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHHh
Q psy10061 223 VALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAFD 265 (325)
Q Consensus 223 ~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~~ 265 (325)
++|..-+...||..+-++.|.+- ..|..-.-++.+.+|++|+.
T Consensus 95 lnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~ 138 (375)
T KOG0591|consen 95 LNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALY 138 (375)
T ss_pred hHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHH
Confidence 46777788899999999999997 66666667788889988864
No 442
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=37.88 E-value=48 Score=28.71 Aligned_cols=28 Identities=4% Similarity=-0.054 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 102 HLEQAIMMCKELNDLTDVENLAKQAATL 129 (325)
Q Consensus 102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~ 129 (325)
-+.++|....+.|+++.|...|++.+++
T Consensus 31 gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 31 GWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 3455556666666666666666666554
No 443
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.62 E-value=1.2e+02 Score=20.00 Aligned_cols=27 Identities=11% Similarity=0.170 Sum_probs=18.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 184 RAARMCVRVKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 184 ~lg~~~~~~g~~~~A~~~~~~al~~~~ 210 (325)
.+-.-|.++|++++|.++..+...-..
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~~~~ 54 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSKDLQ 54 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 444557788888888888877665443
No 444
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=36.00 E-value=3.5e+02 Score=24.92 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHH
Q psy10061 96 AYHAAKHLEQAIMMCKELN---------DLTDVENLAKQAATLFLE 132 (325)
Q Consensus 96 ~~~aa~~~~~~~~~y~~~g---------~~~eA~~~~~~A~~~~~~ 132 (325)
..+.+.++.|+|-+|...+ ...+|..++++|.-++.-
T Consensus 107 ~fEka~vlfNiaal~s~~a~~~~~~~~~glK~A~~~fq~AAG~F~~ 152 (353)
T cd09246 107 HFEKAAVLFNLGALSSQLGLQQDRTTAEGIKQACHAFQAAAGAFAH 152 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Confidence 3455667777776665443 256777788887766654
No 445
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=35.86 E-value=59 Score=28.15 Aligned_cols=29 Identities=17% Similarity=0.115 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhccC-HHHHHHHHHHHHHH
Q psy10061 140 STVLEKGAKSLEELK-SDAALTLYSRAADV 168 (325)
Q Consensus 140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~ 168 (325)
+..+.++|...+..+ .+.|...|++.+++
T Consensus 29 ~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 29 AAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 333444444444444 55555555555444
No 446
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=34.69 E-value=3.8e+02 Score=24.86 Aligned_cols=37 Identities=16% Similarity=0.048 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHH
Q psy10061 96 AYHAAKHLEQAIMMCKELN---------DLTDVENLAKQAATLFLE 132 (325)
Q Consensus 96 ~~~aa~~~~~~~~~y~~~g---------~~~eA~~~~~~A~~~~~~ 132 (325)
..+.+.++.|+|-+|...+ ...+|..+++.|.-++.-
T Consensus 110 ~fEka~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~~ 155 (361)
T cd09239 110 KFEEASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFAY 155 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777776543 255677888888776643
No 447
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=34.06 E-value=97 Score=21.51 Aligned_cols=27 Identities=22% Similarity=0.172 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10061 217 AIGRLAVALVLVQLARGDTVAAEKAFK 243 (325)
Q Consensus 217 ~~~~~~~~lg~~~~~~gd~~~A~~~~~ 243 (325)
..+..|..=|.-++..||+..|..++.
T Consensus 33 ~mA~~Y~~D~~~fl~~gD~v~Ala~~s 59 (75)
T PF04010_consen 33 EMAESYLEDGKYFLEKGDYVNALACFS 59 (75)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345566677777788888888877664
No 448
>KOG1914|consensus
Probab=33.80 E-value=4.8e+02 Score=25.80 Aligned_cols=80 Identities=14% Similarity=0.079 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Q psy10061 154 KSDAALTLYSRAADVAHGEDNYKQAAEYISRAAR-MCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLAR 232 (325)
Q Consensus 154 ~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~ 232 (325)
|...|...+.+|-+.-+.. -.++...+. =|.-++++.-|...|+-.|.-+...+.+ -+....-+...
T Consensus 381 GlkaaR~iF~kaR~~~r~~------hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~y------v~~YldfL~~l 448 (656)
T KOG1914|consen 381 GLKAARKIFKKAREDKRTR------HHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEY------VLKYLDFLSHL 448 (656)
T ss_pred hHHHHHHHHHHHhhccCCc------chhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHH------HHHHHHHHHHh
Confidence 3555555555554322221 123333333 2556789999999998887765443221 11222334456
Q ss_pred CCHHHHHHHHHhh
Q psy10061 233 GDTVAAEKAFKEW 245 (325)
Q Consensus 233 gd~~~A~~~~~~~ 245 (325)
+|-..+...|++.
T Consensus 449 Ndd~N~R~LFEr~ 461 (656)
T KOG1914|consen 449 NDDNNARALFERV 461 (656)
T ss_pred CcchhHHHHHHHH
Confidence 6767777777775
No 449
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=33.72 E-value=93 Score=17.53 Aligned_cols=12 Identities=17% Similarity=0.058 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q psy10061 116 LTDVENLAKQAA 127 (325)
Q Consensus 116 ~~eA~~~~~~A~ 127 (325)
+++|+.+|++|.
T Consensus 24 ~~~A~~~~~~Aa 35 (39)
T PF08238_consen 24 YEKAFKWYEKAA 35 (39)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccchHHHHHHHH
Confidence 455555555554
No 450
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=33.48 E-value=37 Score=26.10 Aligned_cols=29 Identities=7% Similarity=0.166 Sum_probs=24.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 183 SRAARMCVRVKEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 183 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 211 (325)
..+|+.++..|++++|+.+|-+|+.++.+
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 46888889999999999999999988754
No 451
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=33.28 E-value=77 Score=25.38 Aligned_cols=50 Identities=20% Similarity=0.269 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHH
Q psy10061 181 YISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTV 236 (325)
Q Consensus 181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~ 236 (325)
.-.--|.+++..|+|.+|+.+|++..+- ... ...++. -++.|+..+||..
T Consensus 46 ~d~~dg~l~i~rg~w~eA~rvlr~l~~~---~~~-~p~~kA--L~A~CL~al~Dp~ 95 (153)
T TIGR02561 46 LDMFDGWLLIARGNYDEAARILRELLSS---AGA-PPYGKA--LLALCLNAKGDAE 95 (153)
T ss_pred cchhHHHHHHHcCCHHHHHHHHHhhhcc---CCC-chHHHH--HHHHHHHhcCChH
Confidence 3344788999999999999998876442 111 122233 2577788888744
No 452
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=33.09 E-value=3.9e+02 Score=24.55 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHH
Q psy10061 97 YHAAKHLEQAIMMCKELN---------DLTDVENLAKQAATLFL 131 (325)
Q Consensus 97 ~~aa~~~~~~~~~y~~~g---------~~~eA~~~~~~A~~~~~ 131 (325)
.+.+.++.|+|-+|...+ ...+|..++++|.-++.
T Consensus 104 fEka~VLfNiaal~s~~A~~~~~~~~~~~K~A~~~fq~AAG~f~ 147 (348)
T cd09242 104 FEKASVLFNIGALLSQLAAEKYREDEDDLKEAITNLQQAAGCFQ 147 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH
Confidence 455666777776665433 35677788888777764
No 453
>KOG1998|consensus
Probab=31.61 E-value=3.4e+02 Score=30.32 Aligned_cols=125 Identities=13% Similarity=0.048 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChhhHH
Q psy10061 100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAA 179 (325)
Q Consensus 100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~ 179 (325)
..+..++-+.|....+.+-=+.+.-+...++.+.+++..|+..+...+..+...+.+......... .+. .+..-.
T Consensus 1043 ~~~tv~L~~~y~e~nr~Emy~ryiykL~dlh~q~~n~~eAa~tL~l~a~~L~wd~~~~~~~~~~~~----~q~-~~q~KE 1117 (1548)
T KOG1998|consen 1043 MSCTVNLLNFYKEINREEMYIRYIYKLCDLHLQAENYTEAAFTLLLHAGLLKWDDDDLLIQFLPYP----EQT-HRQRKE 1117 (1548)
T ss_pred hHHHHHHHHhcchhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhcCCchhcccCCCCc----ccc-cHHHHH
Confidence 337778888888666655567788888889999999999999999999888876532221111111 000 111112
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHH
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQ 229 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~~ 229 (325)
..+..++..+-+-..|++|+..++++...+... -++...+..+-.++..|
T Consensus 1118 ~L~~e~~~~F~kGk~wE~ai~l~keL~~~Yen~~~Dy~~Ls~~~~~~A~~y 1168 (1548)
T KOG1998|consen 1118 YLYEEIIHYFDKGKMWEKAIALCKELAEQYENIIFDYNKLSELLIQIAQFY 1168 (1548)
T ss_pred HHHHHhhhccccccChhhhchHHHHHHHHHHHHHhhHHHhHHHHHHHHHHH
Confidence 345556666666668888998888888877663 24444444444444433
No 454
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=31.49 E-value=3.4e+02 Score=23.39 Aligned_cols=90 Identities=12% Similarity=0.114 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHhcc----------C-HHHHHHHHHHHHHHHhc-CC--ChhhHHH
Q psy10061 120 ENLAKQAATLFLE-----QGNREAASTVLEKGAKSLEEL----------K-SDAALTLYSRAADVAHG-ED--NYKQAAE 180 (325)
Q Consensus 120 ~~~~~~A~~~~~~-----~g~~~~aa~~l~~lg~~~~~~----------~-~~~A~~~y~~Al~~~~~-~~--~~~~~~~ 180 (325)
.......+.+... ..+...-+-.+..-|.+|.-. . .+.|...|++|+++... .. ++....
T Consensus 91 ~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLg- 169 (236)
T PF00244_consen 91 IDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLG- 169 (236)
T ss_dssp HHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHH-
T ss_pred HHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHH-
Confidence 3444444444333 234444455555566665532 1 58999999999999987 32 333434
Q ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHHHH
Q psy10061 181 YISRAARMC-VRVKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 181 ~~~~lg~~~-~~~g~~~~A~~~~~~al~~~~ 210 (325)
...+.+..| --+|+.++|+.+.+++++.+.
T Consensus 170 l~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 170 LALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 334455554 458999999999999887654
No 455
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=30.94 E-value=3.8e+02 Score=23.82 Aligned_cols=106 Identities=12% Similarity=0.084 Sum_probs=59.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHHh
Q psy10061 187 RMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAFD 265 (325)
Q Consensus 187 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~~ 265 (325)
..+...|+|..|++++.+.-.+..+..........-..+-..+.... ..-...|.+. ..|+ -..-..+.+||.
T Consensus 135 ~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~~~i~--~~ld~~l~~~~~~Fd----~~~Y~~v~~AY~ 208 (291)
T PF10475_consen 135 QELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETLELIE--EQLDSDLSKVCQDFD----PDKYSKVQEAYQ 208 (291)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHhCC----HHHHHHHHHHHH
Confidence 34568899999999998888776655443332222222222221111 0111222222 4454 223456677875
Q ss_pred -cCCHHHHHHHhcChhhhcccHHHHHHhhcCCCC
Q psy10061 266 -EEDPEGARQALNDPFIKHMDVEYSRLARDLPLP 298 (325)
Q Consensus 266 -~gd~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 298 (325)
.|+...+.+-+...-...+.+...++++....+
T Consensus 209 lLgk~~~~~dkl~~~f~~~i~~~~~~vv~~~~~~ 242 (291)
T PF10475_consen 209 LLGKTQSAMDKLQMHFTSAIHSTTFSVVRSYVEQ 242 (291)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777666655666666667777666654
No 456
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=29.66 E-value=2.7e+02 Score=21.71 Aligned_cols=37 Identities=16% Similarity=0.313 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhc
Q psy10061 31 KEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGA 73 (325)
Q Consensus 31 ~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~ 73 (325)
|+.+++.+.+|...+.. +|+++..+...++-+++..+
T Consensus 28 yeg~l~~l~~A~~aie~------~~i~~k~~~i~ka~~Ii~eL 64 (132)
T COG1516 28 YEGALKFLKRAKEAIEQ------EDIEEKNESIDKAIDIITEL 64 (132)
T ss_pred HHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHHH
Confidence 66677777777777765 67788888777777776533
No 457
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=29.58 E-value=6.6e+02 Score=26.07 Aligned_cols=107 Identities=11% Similarity=0.089 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhccC--HHHHHH-HHHHHHHHHhcCCChhhHHHHHHHHHHHHHHc--
Q psy10061 119 VENLAKQAATLFL-EQGNREAASTVLEKGAKSLEELK--SDAALT-LYSRAADVAHGEDNYKQAAEYISRAARMCVRV-- 192 (325)
Q Consensus 119 A~~~~~~A~~~~~-~~g~~~~aa~~l~~lg~~~~~~~--~~~A~~-~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~-- 192 (325)
|-+.+.+|..+|+ ...|......++..+...+...+ .++-.+ .-.++....-+.=+......+...++.++...
T Consensus 611 aYEFf~QAf~iYEE~IsDSk~Q~~aL~~ii~tL~~~r~~~~Enyd~L~tk~t~yasKLLKK~DQCRaV~~CSHLfW~~~~ 690 (762)
T PF03635_consen 611 AYEFFSQAFTIYEEEISDSKAQFQALTLIIGTLQKTRSFSEENYDTLITKCTLYASKLLKKPDQCRAVYLCSHLFWSTEI 690 (762)
T ss_dssp HHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHC-SSHHHHHHHHHHCHHHHHT-B-
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC
Confidence 4445555555555 34555555556665555555543 122111 11122222222212222333344455554432
Q ss_pred --------CCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q psy10061 193 --------KEFDKAADLIRQEIGYHQESEHLLAIGRLAVAL 225 (325)
Q Consensus 193 --------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 225 (325)
.+-...++++++++.++...-+.......+..+
T Consensus 691 ~~~~~~~~rd~krVlECLQKaLriAds~md~~~~~~LfveI 731 (762)
T PF03635_consen 691 SEETGSFYRDGKRVLECLQKALRIADSCMDPSQSVQLFVEI 731 (762)
T ss_dssp TTTTT-B---HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHH
T ss_pred CccccccccChHHHHHHHHHHHHHHHHHhCcchhHHHHHHH
Confidence 377777777777777777665444333344433
No 458
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=29.58 E-value=1.8e+02 Score=21.62 Aligned_cols=40 Identities=25% Similarity=0.136 Sum_probs=28.9
Q ss_pred hhhhhhHHHHHHhhchhccccccccHHHHHHHHHHHHhhhcc
Q psy10061 6 KKEEGMEYVKSAEKHSLSTMTSDRKKEEGMEYVKSAEKHLKT 47 (325)
Q Consensus 6 ~~~~~~~~~~~ae~~~~~~~~~~~~~~eA~~l~~~A~~~~~~ 47 (325)
=..|-++|+..+|+.|++|....+ +|+.++-.++...+++
T Consensus 13 l~~el~~L~d~lEevL~ssg~~a~--~e~~~lR~r~~~~Lk~ 52 (104)
T COG4575 13 LLAELQELLDTLEEVLKSSGSLAG--DEAEELRSKAESALKE 52 (104)
T ss_pred HHHHHHHHHHHHHHHHHhcccchh--hHHHHHHHHHHHHHHH
Confidence 367889999999999999987753 4555555555555543
No 459
>KOG1811|consensus
Probab=29.02 E-value=2.2e+02 Score=28.40 Aligned_cols=63 Identities=11% Similarity=0.041 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcc-cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHhcC
Q psy10061 202 IRQEIGYHQESE-HLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAFDEE 267 (325)
Q Consensus 202 ~~~al~~~~~~~-~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~~~g 267 (325)
|+-+++++.+.+ +..+ +|...|.+++..|++..|.+-|.++....+.+--.++.+|++.+.-|
T Consensus 572 YqlaV~mckKc~iD~f~---aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~ieGg 635 (1141)
T KOG1811|consen 572 YQLAVEMCKKCGIDTFG---AWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINLIEGG 635 (1141)
T ss_pred HHHHHHHHhhcCCCccc---HHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHhhcCC
Confidence 344555555544 2222 46679999999999999999999983333333334667777776544
No 460
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=28.52 E-value=3.3e+02 Score=23.29 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC
Q psy10061 53 KPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELN 114 (325)
Q Consensus 53 ~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g 114 (325)
+++|..|......++..| .+++.+.++.....+-..+.+.++.+++++|+...
T Consensus 29 Gk~Y~KA~~a~~~A~~~y---------~dal~Kige~A~~s~~SkeLG~~L~qi~ev~r~i~ 81 (226)
T cd07645 29 GKNYEKAVNAMVLAGKAY---------YDGVAKIGEIAAVSPVSKELGHVLMEISDVHKKLN 81 (226)
T ss_pred hhHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 466777776666666666 23444555555555555778888888888887643
No 461
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=28.46 E-value=2.3e+02 Score=28.03 Aligned_cols=38 Identities=13% Similarity=0.252 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy10061 53 KPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCY 90 (325)
Q Consensus 53 ~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~ 90 (325)
..++++....+.+|-.+|..-++|.+|++.-..|++-.
T Consensus 509 R~~~~~v~~al~~Ae~~F~~~~~Y~~ALe~i~~alE~v 546 (560)
T PF06160_consen 509 RSDNPEVDEALTEAEDLFRNEYDYEKALETIATALEKV 546 (560)
T ss_pred cCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh
Confidence 45667777777788888877788888777666665544
No 462
>COG1849 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.30 E-value=2.3e+02 Score=20.44 Aligned_cols=28 Identities=21% Similarity=0.073 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 218 IGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 218 ~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.+..|+.=+.-++..||+..|..++.=+
T Consensus 40 ma~~Y~~Dakyf~ekGD~vtAfa~~sYa 67 (90)
T COG1849 40 MAESYFEDAKYFLEKGDYVTAFAALSYA 67 (90)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 3445566667778888888888776543
No 463
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=27.26 E-value=3.5e+02 Score=22.16 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFL 131 (325)
Q Consensus 100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~ 131 (325)
...|.+.+.++..+|+.++|....+++..+|.
T Consensus 144 ~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 144 PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45778888888888888888888888877776
No 464
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=27.18 E-value=4.9e+02 Score=23.86 Aligned_cols=18 Identities=11% Similarity=0.126 Sum_probs=14.3
Q ss_pred ccHHHHHHHHHHHHhhhc
Q psy10061 29 RKKEEGMEYVKSAEKHLK 46 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~ 46 (325)
+.+++|..+|++|.-++.
T Consensus 134 e~~K~A~~~l~~AAG~f~ 151 (346)
T cd09247 134 EDFKEAATHLRRAAGVFE 151 (346)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 358889999999887774
No 465
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=26.98 E-value=2.3e+02 Score=28.15 Aligned_cols=57 Identities=12% Similarity=0.178 Sum_probs=35.7
Q ss_pred ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCY 90 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~ 90 (325)
.+..++..+..++....++ |...++.....|.+|-.+| ..++|.+|++.-..|++-.
T Consensus 493 ~dL~~~a~~lE~~Iqy~nR----fr~~~~~V~~~f~~Ae~lF-~~~~Y~~al~~~~~alE~v 549 (569)
T PRK04778 493 EELVENATLTEQLIQYANR----YRSDNEEVAEALNEAERLF-REYDYKAALEIIATALEKV 549 (569)
T ss_pred HHHHHHHHHHHHHHHHHhc----cCCCCHHHHHHHHHHHHHH-HhCChHHHHHHHHHHHHhh
Confidence 3444555555554444222 3466777778888888888 7778888777666665544
No 466
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=26.71 E-value=2.9e+02 Score=21.05 Aligned_cols=13 Identities=23% Similarity=0.187 Sum_probs=5.7
Q ss_pred CCHHHHHHHHHHH
Q psy10061 114 NDLTDVENLAKQA 126 (325)
Q Consensus 114 g~~~eA~~~~~~A 126 (325)
+.+...+.+++..
T Consensus 21 ~~~~~l~~yLe~~ 33 (140)
T smart00299 21 NLLEELIPYLESA 33 (140)
T ss_pred CcHHHHHHHHHHH
Confidence 3444444444443
No 467
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=26.34 E-value=2.7e+02 Score=20.56 Aligned_cols=28 Identities=32% Similarity=0.289 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 218 IGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 218 ~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.+...+.-|.+.+..||+..|.+.+.+.
T Consensus 58 ka~~al~~Gl~al~~G~~~~A~k~~~~a 85 (108)
T PF07219_consen 58 KAQRALSRGLIALAEGDWQRAEKLLAKA 85 (108)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455577899999999999999999998
No 468
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=26.11 E-value=5.5e+02 Score=24.06 Aligned_cols=58 Identities=5% Similarity=-0.119 Sum_probs=37.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH--HcCCHHHHHHHHHH
Q psy10061 67 ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCK--ELNDLTDVENLAKQ 125 (325)
Q Consensus 67 ~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~--~~g~~~eA~~~~~~ 125 (325)
+..+.+.++|..|...|..+..-... +.....-..+..++++|. ..-++++|.+++++
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~-~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLS-AVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccC-hhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34556788999999998887744211 222333455666666654 55677788888874
No 469
>KOG1310|consensus
Probab=26.03 E-value=4.7e+02 Score=25.86 Aligned_cols=83 Identities=11% Similarity=-0.044 Sum_probs=46.5
Q ss_pred cHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q psy10061 30 KKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMM 109 (325)
Q Consensus 30 ~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~ 109 (325)
....++..|.++.... ..+..+|..=+.++.+.+=.. +.|...-+|+..+.-....-.++..++.+
T Consensus 389 ~~~~~i~~~s~a~q~~-----------~~~~~~l~nraa~lmkRkW~~---d~~~AlrDch~Alrln~s~~kah~~la~a 454 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYV-----------PDAIYLLENRAAALMKRKWRG---DSYLALRDCHVALRLNPSIQKAHFRLARA 454 (758)
T ss_pred HHHHHHHHHHHHhhhc-----------cchhHHHHhHHHHHHhhhccc---cHHHHHHhHHhhccCChHHHHHHHHHHHH
Confidence 4566666666665544 233444444444443332222 23333334444443334455677888888
Q ss_pred HHHcCCHHHHHHHHHHH
Q psy10061 110 CKELNDLTDVENLAKQA 126 (325)
Q Consensus 110 y~~~g~~~eA~~~~~~A 126 (325)
...++++.+|+++..-+
T Consensus 455 L~el~r~~eal~~~~al 471 (758)
T KOG1310|consen 455 LNELTRYLEALSCHWAL 471 (758)
T ss_pred HHHHhhHHHhhhhHHHH
Confidence 88888888888876654
No 470
>KOG2709|consensus
Probab=25.62 E-value=1.1e+02 Score=28.84 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLE 132 (325)
Q Consensus 99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~ 132 (325)
.|-+..+.|.+|-+++++.+|+.+|++++.+..+
T Consensus 21 ~A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 21 GAYASVEQGLCYDEVNDWENALAMYEKGLNLIVE 54 (560)
T ss_pred HHHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHh
Confidence 4556677788888889999999999998887765
No 471
>KOG0013|consensus
Probab=25.56 E-value=2.5e+02 Score=23.85 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=27.8
Q ss_pred HHHHhhcccCCChHH-HHHHHHHHHHhcCCHHHHHHHhcC
Q psy10061 240 KAFKEWGNCCEAPEV-QTLEKLLQAFDEEDPEGARQALND 278 (325)
Q Consensus 240 ~~~~~~~~~~~~~e~-~~l~~L~~a~~~gd~~~~~~~~~~ 278 (325)
++++.++.|.++.|- .+|.....+...||.+.+...+-.
T Consensus 50 EFWdTapAf~GrKEIWDaL~aa~ta~e~~d~e~Aqai~dg 89 (231)
T KOG0013|consen 50 EFWDTAPAFGGRKEIWDALHAAVTAAEEGDAEAAQAILDG 89 (231)
T ss_pred hhhhcccccCCcHHHHHHHHHHHHHHhcccHHHHHHHHhc
Confidence 334445788766654 677777778888999988887764
No 472
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=25.28 E-value=5.4e+02 Score=23.68 Aligned_cols=17 Identities=24% Similarity=0.645 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy10061 76 FQQCKEYLLKAANCYET 92 (325)
Q Consensus 76 ~~~A~~~~~~a~~~~~~ 92 (325)
..+|..+|++|+.++.-
T Consensus 131 lK~A~~~fq~AAG~F~~ 147 (355)
T cd09241 131 LKRACSYFQASAGCFEY 147 (355)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666666666553
No 473
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=24.95 E-value=4e+02 Score=24.14 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 102 HLEQAIMMCKELNDLTDVENLAKQAATL 129 (325)
Q Consensus 102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~ 129 (325)
.+...+..|...|.+.+|+.+.++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltl 308 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTL 308 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc
Confidence 3555666677777888888877777654
No 474
>KOG1498|consensus
Probab=24.34 E-value=6.1e+02 Score=23.95 Aligned_cols=45 Identities=18% Similarity=0.162 Sum_probs=25.5
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQ 77 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~ 77 (325)
.++...|++-+..-++..+. ..|+..-...+..+..+....++|+
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~-----~~D~~s~~kv~~~i~~lc~~~~~w~ 69 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRL-----ASDMASNTKVLEEIMKLCFSAKDWD 69 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHhccccHH
Confidence 34677777777666666655 2455555555555555554444443
No 475
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=24.03 E-value=3.7e+02 Score=21.33 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061 99 AAKHLEQAIMMCKELNDLTDVENLAKQAAT 128 (325)
Q Consensus 99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~ 128 (325)
-+..+..++..|.+.|+..++-+...+|.+
T Consensus 119 ~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 119 NPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 355677888999999999999888888763
No 476
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=23.99 E-value=3.8e+02 Score=25.37 Aligned_cols=31 Identities=10% Similarity=-0.163 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 179 AEYISRAARMCVRVKEFDKAADLIRQEIGYH 209 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 209 (325)
+.++..+|......+++.+|+.+++.+....
T Consensus 296 A~A~~~~g~d~~e~~k~GeaIa~L~~A~~~L 326 (413)
T cd09245 296 ALACKFLGIDAGENGKVGEAIGWLRAAKKEL 326 (413)
T ss_pred HHHHHHHHHhhHhcCCHHHHHHHHHHHHHHH
Confidence 3455556666666777777777777776643
No 477
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=23.85 E-value=8.3e+02 Score=25.34 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHhh----cccC-CChHHHHHHHHHHH
Q psy10061 233 GDTVAAEKAFKEW----GNCC-EAPEVQTLEKLLQA 263 (325)
Q Consensus 233 gd~~~A~~~~~~~----~~~~-~~~e~~~l~~L~~a 263 (325)
.|..+..++++++ +... +.....+...+.+.
T Consensus 699 rd~krVlECLQKaLriAds~md~~~~~~LfveILn~ 734 (762)
T PF03635_consen 699 RDGKRVLECLQKALRIADSCMDPSQSVQLFVEILNR 734 (762)
T ss_dssp --HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHH
Confidence 4889999999996 4433 33444555555553
No 478
>KOG4563|consensus
Probab=23.07 E-value=4e+02 Score=24.80 Aligned_cols=62 Identities=10% Similarity=-0.011 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc-C-ChHHHHHHHHHHHHHHHHcCCHHH
Q psy10061 57 DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN-K-SAYHAAKHLEQAIMMCKELNDLTD 118 (325)
Q Consensus 57 ~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~-~-~~~~aa~~~~~~~~~y~~~g~~~e 118 (325)
+..++-.-.+|+.+...++++.|.+.|..|..+.... | .......++.--|..+...+++..
T Consensus 38 ~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~ 101 (400)
T KOG4563|consen 38 EKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEES 101 (400)
T ss_pred HHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666777777777777777766665543 1 222333444444444444444433
No 479
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=22.90 E-value=3.5e+02 Score=20.60 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=21.7
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061 72 GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAK 124 (325)
Q Consensus 72 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~ 124 (325)
..+.+.....+++....-. . .....++.+..+|.+. +..+.+++++
T Consensus 19 ~~~~~~~l~~yLe~~~~~~----~--~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 19 KRNLLEELIPYLESALKLN----S--ENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred hCCcHHHHHHHHHHHHccC----c--cchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 3445566666655544221 1 2233556666666653 2333444433
No 480
>KOG1914|consensus
Probab=22.42 E-value=7.7e+02 Score=24.45 Aligned_cols=80 Identities=10% Similarity=0.102 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHH-HHHHHHhcC
Q psy10061 155 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVA-LVLVQLARG 233 (325)
Q Consensus 155 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-lg~~~~~~g 233 (325)
++....+|.+.+.+....-+ -++..+...-.+..-...|...|.++-+.-+.. .+.+.. .-.-|..++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-----Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~------hhVfVa~A~mEy~csk 415 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-----LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR------HHVFVAAALMEYYCSK 415 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-----eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc------chhhHHHHHHHHHhcC
Confidence 55566666666655543321 134444455555566667777777765532221 122222 223467789
Q ss_pred CHHHHHHHHHhh
Q psy10061 234 DTVAAEKAFKEW 245 (325)
Q Consensus 234 d~~~A~~~~~~~ 245 (325)
|..-|...|+--
T Consensus 416 D~~~AfrIFeLG 427 (656)
T KOG1914|consen 416 DKETAFRIFELG 427 (656)
T ss_pred ChhHHHHHHHHH
Confidence 999999999874
No 481
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=22.36 E-value=5.9e+02 Score=23.08 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhc
Q psy10061 157 AALTLYSRAADVAHG 171 (325)
Q Consensus 157 ~A~~~y~~Al~~~~~ 171 (325)
++..+|++|......
T Consensus 211 ~~~~~y~~A~~~l~~ 225 (345)
T cd09034 211 EAAKYYEEALKCLSG 225 (345)
T ss_pred HHHHHHHHHHHHHhc
Confidence 445555555555543
No 482
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=22.33 E-value=6.2e+02 Score=23.31 Aligned_cols=26 Identities=4% Similarity=-0.166 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 220 RLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 220 ~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.+++..|......+++.+++..++.+
T Consensus 248 ~A~~~~a~~~~~~~k~GeaIa~L~~A 273 (353)
T cd09246 248 EALYRAAKDLHEKEDIGEEIARLRAA 273 (353)
T ss_pred HHHHHHHHHhHHhcchHHHHHHHHHH
Confidence 33445555556667777777777765
No 483
>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.
Probab=22.22 E-value=4.9e+02 Score=22.09 Aligned_cols=52 Identities=17% Similarity=0.080 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc
Q psy10061 53 KPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKEL 113 (325)
Q Consensus 53 ~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~ 113 (325)
+++|..|......++..|. ++..+.++......-....+.++.++++++++.
T Consensus 29 Gk~Y~kA~~a~t~aa~~Yf---------~Al~KiGe~A~~s~~s~~LG~vLmqisev~r~i 80 (215)
T cd07644 29 GNNYLRAFHALSEAAEVYF---------SAIAKIGEQALQSLTSQSLGEILIQMSETQRKL 80 (215)
T ss_pred hHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Confidence 3555555555555555551 222333444444444556777888888888764
No 484
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=22.04 E-value=6.8e+02 Score=23.70 Aligned_cols=17 Identities=12% Similarity=0.034 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhc
Q psy10061 155 SDAALTLYSRAADVAHG 171 (325)
Q Consensus 155 ~~~A~~~y~~Al~~~~~ 171 (325)
+-+|+.+++.|...+..
T Consensus 312 ~GeaIa~L~~A~~~L~~ 328 (413)
T cd09245 312 VGEAIGWLRAAKKELED 328 (413)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555554433
No 485
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=21.94 E-value=1e+02 Score=24.57 Aligned_cols=29 Identities=7% Similarity=0.001 Sum_probs=25.6
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHHHHHH
Q psy10061 183 SRAARMCVRVK-EFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 183 ~~lg~~~~~~g-~~~~A~~~~~~al~~~~~ 211 (325)
..+|+.+...| ++.+++.+|-+||.++.+
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~q 123 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVYPQ 123 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhCCC
Confidence 47899999999 999999999999998754
No 486
>KOG0890|consensus
Probab=21.78 E-value=1.4e+03 Score=27.20 Aligned_cols=128 Identities=9% Similarity=-0.008 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC
Q psy10061 76 FQQCKEYLLKAANCYETN-KSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK 154 (325)
Q Consensus 76 ~~~A~~~~~~a~~~~~~~-~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~ 154 (325)
..+-+-.++++......- +-....+.+|.+.+.+.+..|+++.|-.+.-+|.+.- ....+...|.++-..+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--------~~~i~~E~AK~lW~~g 1716 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--------LPEIVLERAKLLWQTG 1716 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--------cchHHHHHHHHHHhhc
Confidence 344455555555444332 4466789999999999999999999988877775432 3445566666665555
Q ss_pred -HHHHHHHHHHHHHHHhcC-CCh-----h-----hHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHH
Q psy10061 155 -SDAALTLYSRAADVAHGE-DNY-----K-----QAAEYISRAARMCVRVKEFD--KAADLIRQEIGYHQE 211 (325)
Q Consensus 155 -~~~A~~~y~~Al~~~~~~-~~~-----~-----~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~~~~~ 211 (325)
.+.|+..+++.++..... ..+ . .-..+...++.-.-..++.. .-+.+|+.+.++.++
T Consensus 1717 d~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1717 DELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred cHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence 899999999999766543 111 1 11123444555455555533 456777777777664
No 487
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=21.72 E-value=5.3e+02 Score=22.28 Aligned_cols=121 Identities=14% Similarity=0.050 Sum_probs=68.1
Q ss_pred CCHHHHHHHHHHHHHH------------HHhcCCHHHHHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHHHHHcCC
Q psy10061 54 PDYDSAADDYSKAATC------------FKGAKSFQQCKEYLLKAANCYETNKSA------YHAAKHLEQAIMMCKELND 115 (325)
Q Consensus 54 ~~~~~A~~~y~~a~~~------------y~~~g~~~~A~~~~~~a~~~~~~~~~~------~~aa~~~~~~~~~y~~~g~ 115 (325)
|+|.--++-|-..|.. ..-.|+|+.|++...-|++-...+.+. .-.+.-....+......|+
T Consensus 65 P~Y~p~V~g~L~~g~~~qd~Vl~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~ 144 (230)
T PHA02537 65 PKYLPWVEGVLAAGAGYQDDVLMTVMVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGE 144 (230)
T ss_pred cchHHHHHHHHHcCCCCCCCeeeEeeeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCC
Confidence 5666666655555432 235688999999888887665444321 2234444444555555555
Q ss_pred HHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHh---------ccC-HHHHHHHHHHHHHHHhcCCCh
Q psy10061 116 LTDVENLAKQAATLFLEQGNRE-AASTVLEKGAKSLE---------ELK-SDAALTLYSRAADVAHGEDNY 175 (325)
Q Consensus 116 ~~eA~~~~~~A~~~~~~~g~~~-~aa~~l~~lg~~~~---------~~~-~~~A~~~y~~Al~~~~~~~~~ 175 (325)
.-+. .+......+-.....++ -.++.|.-+|..+. ..+ ...|+.++++|+.+....|..
T Consensus 145 ~~e~-~~~~~~~~l~~~~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK 214 (230)
T PHA02537 145 SVEP-YFLRVFLDLTTEWDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVK 214 (230)
T ss_pred CCCh-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChH
Confidence 3221 12233333333333333 33456666676662 223 788899999998888877654
No 488
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=21.70 E-value=6.4e+02 Score=23.21 Aligned_cols=36 Identities=17% Similarity=0.119 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHH
Q psy10061 97 YHAAKHLEQAIMMCKELN---------DLTDVENLAKQAATLFLE 132 (325)
Q Consensus 97 ~~aa~~~~~~~~~y~~~g---------~~~eA~~~~~~A~~~~~~ 132 (325)
.+.+.++.|+|-+|...+ ...+|..++++|.-++.-
T Consensus 103 fEka~VLfNigal~sq~a~~~~~~~~~glK~A~~~fq~AAG~F~~ 147 (355)
T cd09241 103 FERANILYNLGALYSQLALSENRYTDEGLKRACSYFQASAGCFEY 147 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH
Confidence 455667777777765443 356777788887766543
No 489
>KOG0739|consensus
Probab=21.04 E-value=1.4e+02 Score=27.05 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=30.4
Q ss_pred CcccchhhhhhHHHHHHhhchhccccccccHHHHHHHHHHHHhhhcc
Q psy10061 1 MTSDRKKEEGMEYVKSAEKHSLSTMTSDRKKEEGMEYVKSAEKHLKT 47 (325)
Q Consensus 1 ~~~~~~~~~~~~~~~~ae~~~~~~~~~~~~~~eA~~l~~~A~~~~~~ 47 (325)
|+.--.+++|.+|+++|-.- -..++|.+|..+|..|..++..
T Consensus 1 ms~~~~l~kaI~lv~kA~~e-----D~a~nY~eA~~lY~~aleYF~~ 42 (439)
T KOG0739|consen 1 MSNGSFLQKAIDLVKKAIDE-----DNAKNYEEALRLYQNALEYFLH 42 (439)
T ss_pred CCcchHHHHHHHHHHHHhhh-----cchhchHHHHHHHHHHHHHHHH
Confidence 44444789999999988541 1235788888888888887764
No 490
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=20.97 E-value=5.7e+02 Score=23.20 Aligned_cols=18 Identities=6% Similarity=0.182 Sum_probs=14.8
Q ss_pred ccHHHHHHHHHHHHhhhc
Q psy10061 29 RKKEEGMEYVKSAEKHLK 46 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~ 46 (325)
...+.|..+|++|..++.
T Consensus 135 ~~~k~A~~~fq~AAG~F~ 152 (345)
T cd09034 135 EDLKQAIKSLQKAAGYFE 152 (345)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 468899999999887775
No 491
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=20.88 E-value=4.8e+02 Score=24.16 Aligned_cols=18 Identities=6% Similarity=0.145 Sum_probs=14.3
Q ss_pred ccHHHHHHHHHHHHhhhc
Q psy10061 29 RKKEEGMEYVKSAEKHLK 46 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~ 46 (325)
+..++|..+|++|..++.
T Consensus 135 e~~K~A~~~fq~AAG~F~ 152 (353)
T cd09243 135 DEAKDVHKSLRTAAGIFQ 152 (353)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 347889999999887774
No 492
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.51 E-value=6.9e+02 Score=23.19 Aligned_cols=38 Identities=11% Similarity=-0.064 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy10061 55 DYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYET 92 (325)
Q Consensus 55 ~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~ 92 (325)
++..++-.=-+.|.++..+++|.++...+.-+-..++.
T Consensus 53 k~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~Kq 90 (449)
T COG3014 53 KKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQ 90 (449)
T ss_pred hhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhh
Confidence 33443333335688888899988888777666665554
No 493
>KOG3807|consensus
Probab=20.26 E-value=6.9e+02 Score=23.10 Aligned_cols=179 Identities=13% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH---------HHH
Q psy10061 58 SAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQ---------AAT 128 (325)
Q Consensus 58 ~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~---------A~~ 128 (325)
+|-..+.++..+-...=+-.+....+..-.+...+- |..-....-.++++|-+++|+..+|+..++. .++
T Consensus 234 ~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rR-Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~ln 312 (556)
T KOG3807|consen 234 DAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRR-DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLN 312 (556)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhc-ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHH
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHhccC----HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10061 129 LFLEQGNREAASTVLEKGAKSLEELK----SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQ 204 (325)
Q Consensus 129 ~~~~~g~~~~aa~~l~~lg~~~~~~~----~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 204 (325)
+....=..--..++|...-.++.+-+ +..|.-+|..|+--.+...+.. ..++-.+-|..-.++ .|++...+
T Consensus 313 iheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK~RAVa~kF-spd~asrRGLS~AE~----~AvEAihR 387 (556)
T KOG3807|consen 313 IHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTRAVSEKF-SPETASRRGLSTAEI----NAVEAIHR 387 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHhhc-CchhhhhccccHHHH----HHHHHHHH
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy10061 205 EIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAF 242 (325)
Q Consensus 205 al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~ 242 (325)
+++..+-...+...-+.+.-=-.-.++.||.+.-.-.|
T Consensus 388 AvEFNPHVPkYLLE~kslIlPPEHiLKRGDSEAlAYAF 425 (556)
T KOG3807|consen 388 AVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAIAYAF 425 (556)
T ss_pred HhhcCCCCcHHHHHHHhccCCHHHHhhcccHHHHHHHH
Done!