Query psy10061
Match_columns 325
No_of_seqs 257 out of 2011
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 16:53:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10061.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10061hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ifu_A Gamma-SNAP; membrane fu 100.0 3.9E-37 1.3E-41 276.9 36.7 279 28-307 4-286 (307)
2 1qqe_A Vesicular transport pro 100.0 3.2E-33 1.1E-37 249.6 27.9 263 34-296 4-281 (292)
3 1qqe_A Vesicular transport pro 99.9 6.3E-25 2.2E-29 195.7 27.9 250 8-264 2-284 (292)
4 4a1s_A PINS, partner of inscut 99.9 1.3E-23 4.5E-28 194.4 31.1 257 28-289 99-381 (411)
5 2ifu_A Gamma-SNAP; membrane fu 99.9 1.3E-23 4.3E-28 188.6 27.0 234 3-240 3-253 (307)
6 3ulq_A Response regulator aspa 99.9 8.2E-23 2.8E-27 188.3 32.9 243 28-278 116-364 (383)
7 3ro2_A PINS homolog, G-protein 99.9 2.7E-22 9.2E-27 178.6 30.4 268 6-278 20-328 (338)
8 3sf4_A G-protein-signaling mod 99.9 4.1E-22 1.4E-26 183.0 32.0 268 6-278 24-332 (406)
9 3sf4_A G-protein-signaling mod 99.9 1.3E-21 4.3E-26 179.8 29.8 259 6-269 62-363 (406)
10 3q15_A PSP28, response regulat 99.9 1.4E-21 4.8E-26 179.9 28.4 242 28-278 114-361 (378)
11 4a1s_A PINS, partner of inscut 99.9 5E-21 1.7E-25 177.0 31.7 245 27-278 60-328 (411)
12 3ulq_A Response regulator aspa 99.9 2.5E-21 8.4E-26 178.3 28.2 210 65-274 108-324 (383)
13 3ro2_A PINS homolog, G-protein 99.9 1.2E-20 4.2E-25 167.8 31.4 245 27-278 17-288 (338)
14 3q15_A PSP28, response regulat 99.9 1.4E-20 4.9E-25 173.1 30.0 213 62-275 103-322 (378)
15 3edt_B KLC 2, kinesin light ch 99.9 5.4E-20 1.8E-24 160.1 26.5 183 26-211 12-201 (283)
16 3nf1_A KLC 1, kinesin light ch 99.9 4.2E-19 1.4E-23 157.0 27.0 184 25-211 37-227 (311)
17 3nf1_A KLC 1, kinesin light ch 99.8 1.5E-18 5.2E-23 153.3 26.7 226 53-278 20-303 (311)
18 3gw4_A Uncharacterized protein 99.8 2.6E-18 9E-23 142.9 24.8 191 28-229 5-197 (203)
19 1hz4_A MALT regulatory protein 99.8 3.8E-17 1.3E-21 149.4 33.0 248 24-278 23-278 (373)
20 3u3w_A Transcriptional activat 99.8 8.7E-18 3E-22 149.2 21.7 183 28-215 88-273 (293)
21 3ro3_A PINS homolog, G-protein 99.8 4.9E-17 1.7E-21 129.2 23.0 160 54-213 3-163 (164)
22 3gw4_A Uncharacterized protein 99.8 3.9E-17 1.3E-21 135.8 22.9 168 72-245 4-173 (203)
23 2qfc_A PLCR protein; TPR, HTH, 99.8 3.7E-17 1.3E-21 145.1 23.3 186 27-217 87-275 (293)
24 3edt_B KLC 2, kinesin light ch 99.8 3.8E-17 1.3E-21 142.0 22.8 208 71-278 12-277 (283)
25 4b4t_Q 26S proteasome regulato 99.8 7.1E-17 2.4E-21 150.2 24.8 234 7-245 1-242 (434)
26 2qfc_A PLCR protein; TPR, HTH, 99.8 2.3E-17 7.7E-22 146.5 20.3 186 60-245 75-263 (293)
27 3u3w_A Transcriptional activat 99.8 2E-17 6.9E-22 146.8 19.9 188 58-245 73-263 (293)
28 3ro3_A PINS homolog, G-protein 99.8 1.4E-16 5E-21 126.4 22.6 153 93-245 2-155 (164)
29 4eqf_A PEX5-related protein; a 99.7 1.6E-16 5.5E-21 144.5 22.1 222 28-278 78-306 (365)
30 3uq3_A Heat shock protein STI1 99.7 1.7E-15 5.9E-20 129.9 27.4 212 27-278 17-232 (258)
31 3uq3_A Heat shock protein STI1 99.7 3.7E-15 1.3E-19 127.8 26.8 192 58-278 3-198 (258)
32 1hz4_A MALT regulatory protein 99.7 3.8E-15 1.3E-19 136.0 27.4 220 57-278 11-240 (373)
33 3hym_B Cell division cycle pro 99.7 1E-15 3.6E-20 136.1 20.4 230 29-278 36-295 (330)
34 2pl2_A Hypothetical conserved 99.7 1.4E-15 4.8E-20 129.1 20.0 191 61-278 6-210 (217)
35 1w3b_A UDP-N-acetylglucosamine 99.7 2.8E-15 9.4E-20 137.6 23.2 194 28-245 80-297 (388)
36 2pl2_A Hypothetical conserved 99.7 3.8E-16 1.3E-20 132.6 16.0 184 26-245 16-211 (217)
37 1fch_A Peroxisomal targeting s 99.7 2.1E-15 7.2E-20 136.7 21.2 221 29-278 78-355 (368)
38 3vtx_A MAMA; tetratricopeptide 99.7 3E-15 1E-19 122.9 19.5 163 59-245 4-167 (184)
39 3hym_B Cell division cycle pro 99.7 3.5E-15 1.2E-19 132.7 21.4 250 6-274 37-326 (330)
40 3u4t_A TPR repeat-containing p 99.7 1.4E-15 4.7E-20 132.2 18.0 185 29-245 17-205 (272)
41 1w3b_A UDP-N-acetylglucosamine 99.7 9.7E-15 3.3E-19 133.9 24.5 247 6-278 82-364 (388)
42 3ieg_A DNAJ homolog subfamily 99.7 1.9E-14 6.6E-19 129.1 24.1 257 6-278 18-331 (359)
43 2xpi_A Anaphase-promoting comp 99.7 2.3E-14 8E-19 138.5 25.9 253 6-278 287-575 (597)
44 3cv0_A Peroxisome targeting si 99.7 3.3E-14 1.1E-18 126.2 24.8 222 28-278 34-311 (327)
45 4gyw_A UDP-N-acetylglucosamine 99.7 1.4E-15 4.6E-20 151.2 17.1 165 57-245 6-171 (723)
46 4eqf_A PEX5-related protein; a 99.7 4.9E-15 1.7E-19 134.6 19.3 246 6-278 80-352 (365)
47 2y4t_A DNAJ homolog subfamily 99.7 6.3E-14 2.1E-18 130.6 26.8 193 70-278 153-354 (450)
48 3u4t_A TPR repeat-containing p 99.6 4.7E-15 1.6E-19 128.8 17.1 221 5-251 17-254 (272)
49 1fch_A Peroxisomal targeting s 99.6 8E-15 2.7E-19 132.9 19.0 223 6-245 79-356 (368)
50 3ieg_A DNAJ homolog subfamily 99.6 1.8E-13 6.3E-18 122.7 26.8 240 27-278 15-297 (359)
51 2y4t_A DNAJ homolog subfamily 99.6 9.6E-14 3.3E-18 129.3 25.7 239 28-278 39-320 (450)
52 2ho1_A Type 4 fimbrial biogene 99.6 1.4E-13 4.7E-18 118.2 24.0 202 53-278 30-234 (252)
53 1ouv_A Conserved hypothetical 99.6 2E-13 6.8E-18 119.2 25.3 217 27-291 18-260 (273)
54 4abn_A Tetratricopeptide repea 99.6 4E-14 1.4E-18 134.3 22.1 234 31-296 77-331 (474)
55 4b4t_Q 26S proteasome regulato 99.6 1.9E-13 6.4E-18 126.9 26.1 246 28-278 68-320 (434)
56 2vq2_A PILW, putative fimbrial 99.6 2E-13 6.7E-18 114.5 22.9 198 57-278 5-207 (225)
57 3fp2_A TPR repeat-containing p 99.6 1.1E-13 3.7E-18 131.7 23.3 219 28-278 256-487 (537)
58 2gw1_A Mitochondrial precursor 99.6 4.2E-14 1.4E-18 133.6 19.3 219 28-278 250-474 (514)
59 2ho1_A Type 4 fimbrial biogene 99.6 8.2E-14 2.8E-18 119.6 18.9 193 27-252 49-243 (252)
60 3cv0_A Peroxisome targeting si 99.6 2E-13 6.9E-18 121.1 21.5 222 6-245 36-312 (327)
61 2vq2_A PILW, putative fimbrial 99.6 4.7E-13 1.6E-17 112.1 22.2 195 27-254 20-218 (225)
62 2q7f_A YRRB protein; TPR, prot 99.6 7.1E-14 2.4E-18 118.9 17.3 184 27-245 35-219 (243)
63 3qky_A Outer membrane assembly 99.6 1.9E-13 6.7E-18 118.6 19.7 196 60-264 15-242 (261)
64 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.4E-12 4.7E-17 113.0 24.7 155 28-208 18-173 (275)
65 3qky_A Outer membrane assembly 99.6 1E-13 3.6E-18 120.3 17.6 209 7-237 12-250 (261)
66 3fp2_A TPR repeat-containing p 99.6 2.8E-13 9.7E-18 128.9 21.7 219 7-254 259-498 (537)
67 4g1t_A Interferon-induced prot 99.6 1.8E-13 6.3E-18 128.4 19.9 244 27-278 63-397 (472)
68 4i17_A Hypothetical protein; T 99.6 2.3E-13 7.8E-18 115.5 18.2 160 61-235 8-169 (228)
69 4g1t_A Interferon-induced prot 99.5 2.2E-13 7.6E-18 127.9 18.9 230 30-278 26-272 (472)
70 4abn_A Tetratricopeptide repea 99.5 4E-14 1.4E-18 134.3 13.6 186 27-245 114-318 (474)
71 4gyw_A UDP-N-acetylglucosamine 99.5 8.2E-14 2.8E-18 138.4 16.3 159 24-211 18-177 (723)
72 2q7f_A YRRB protein; TPR, prot 99.5 2.6E-13 8.9E-18 115.4 16.7 196 57-278 20-218 (243)
73 1ouv_A Conserved hypothetical 99.5 1.7E-12 5.7E-17 113.2 22.1 184 60-278 6-211 (273)
74 2xpi_A Anaphase-promoting comp 99.5 5.8E-13 2E-17 128.6 21.0 222 6-245 320-576 (597)
75 3vtx_A MAMA; tetratricopeptide 99.5 4.4E-13 1.5E-17 109.8 17.3 155 27-210 17-172 (184)
76 2h6f_A Protein farnesyltransfe 99.5 1.2E-13 4.3E-18 127.3 14.9 201 28-265 110-320 (382)
77 3as5_A MAMA; tetratricopeptide 99.5 4.7E-13 1.6E-17 108.4 15.7 167 55-245 3-170 (186)
78 2gw1_A Mitochondrial precursor 99.5 1.5E-13 5.1E-18 129.8 14.5 226 28-278 202-440 (514)
79 2yhc_A BAMD, UPF0169 lipoprote 99.5 2.1E-12 7.2E-17 109.9 19.5 176 61-245 5-210 (225)
80 3urz_A Uncharacterized protein 99.5 6.8E-12 2.3E-16 105.5 19.0 176 66-260 10-199 (208)
81 3n71_A Histone lysine methyltr 99.5 3.9E-12 1.3E-16 120.7 19.4 143 26-171 320-467 (490)
82 2h6f_A Protein farnesyltransfe 99.4 2.4E-12 8.1E-17 118.8 16.6 194 57-276 94-299 (382)
83 4i17_A Hypothetical protein; T 99.4 6.4E-12 2.2E-16 106.5 18.1 157 101-269 8-169 (228)
84 4gcn_A Protein STI-1; structur 99.4 6.5E-12 2.2E-16 97.2 16.4 102 138-245 6-109 (127)
85 3n71_A Histone lysine methyltr 99.4 7.9E-12 2.7E-16 118.6 19.5 143 67-209 316-465 (490)
86 4ga2_A E3 SUMO-protein ligase 99.4 1.8E-12 6.2E-17 103.3 11.1 146 65-234 2-149 (150)
87 4gcn_A Protein STI-1; structur 99.4 1E-11 3.5E-16 96.1 14.9 107 97-209 5-113 (127)
88 3rjv_A Putative SEL1 repeat pr 99.4 3.6E-11 1.2E-15 101.4 18.7 173 32-245 3-194 (212)
89 2yhc_A BAMD, UPF0169 lipoprote 99.4 3.1E-11 1.1E-15 102.5 18.1 166 28-207 17-212 (225)
90 2xm6_A Protein corresponding t 99.4 2.1E-10 7.1E-15 108.8 25.6 186 28-245 56-285 (490)
91 3mkr_A Coatomer subunit epsilo 99.4 3.4E-11 1.2E-15 106.8 18.2 192 60-278 65-260 (291)
92 2xm6_A Protein corresponding t 99.4 3.2E-10 1.1E-14 107.5 25.4 191 53-278 56-284 (490)
93 2pzi_A Probable serine/threoni 99.3 5E-12 1.7E-16 125.2 12.6 179 27-234 403-583 (681)
94 3as5_A MAMA; tetratricopeptide 99.3 7.6E-11 2.6E-15 95.2 17.3 156 27-211 20-176 (186)
95 1xnf_A Lipoprotein NLPI; TPR, 99.3 4.4E-11 1.5E-15 103.4 16.1 186 72-278 17-240 (275)
96 1xi4_A Clathrin heavy chain; a 99.3 4.1E-10 1.4E-14 116.0 24.0 245 7-277 1037-1337(1630)
97 1hh8_A P67PHOX, NCF-2, neutrop 99.3 5E-11 1.7E-15 99.5 13.9 132 99-245 5-147 (213)
98 2ond_A Cleavage stimulation fa 99.3 2.9E-10 9.8E-15 101.2 19.3 213 32-278 33-266 (308)
99 3rjv_A Putative SEL1 repeat pr 99.3 4.3E-10 1.5E-14 94.7 18.7 172 78-280 4-195 (212)
100 3mkr_A Coatomer subunit epsilo 99.3 1.2E-09 4.1E-14 96.7 22.3 166 53-245 78-261 (291)
101 3urz_A Uncharacterized protein 99.3 5.9E-10 2E-14 93.5 18.8 180 100-293 4-197 (208)
102 2vsy_A XCC0866; transferase, g 99.2 8.3E-11 2.8E-15 113.7 15.0 155 28-211 2-160 (568)
103 1hh8_A P67PHOX, NCF-2, neutrop 99.2 1.7E-10 5.9E-15 96.2 14.9 134 63-211 9-153 (213)
104 4ga2_A E3 SUMO-protein ligase 99.2 1.2E-10 4.1E-15 92.6 12.4 141 25-194 7-149 (150)
105 2pzi_A Probable serine/threoni 99.2 9.8E-11 3.4E-15 115.9 14.1 187 71-277 402-597 (681)
106 2vsy_A XCC0866; transferase, g 99.2 1.5E-10 5.2E-15 111.8 15.2 149 73-245 2-154 (568)
107 4gco_A Protein STI-1; structur 99.2 2.9E-10 9.9E-15 87.7 13.7 102 97-210 10-112 (126)
108 1a17_A Serine/threonine protei 99.2 7.2E-10 2.5E-14 88.2 16.3 132 98-245 11-143 (166)
109 2hr2_A Hypothetical protein; a 99.2 5.6E-10 1.9E-14 89.2 14.9 114 99-212 10-135 (159)
110 2r5s_A Uncharacterized protein 99.2 1.4E-10 5E-15 94.4 11.7 161 62-245 8-170 (176)
111 1a17_A Serine/threonine protei 99.2 1.4E-09 4.8E-14 86.5 17.1 141 57-213 10-151 (166)
112 4gco_A Protein STI-1; structur 99.2 4.5E-10 1.5E-14 86.6 13.6 114 57-188 10-124 (126)
113 2ond_A Cleavage stimulation fa 99.2 7.2E-10 2.4E-14 98.6 16.8 185 32-245 81-267 (308)
114 2fo7_A Synthetic consensus TPR 99.2 1.5E-09 5E-14 82.5 16.0 130 61-208 2-132 (136)
115 3qww_A SET and MYND domain-con 99.2 7.4E-10 2.5E-14 103.5 17.0 116 29-147 312-431 (433)
116 3upv_A Heat shock protein STI1 99.2 1.4E-09 4.7E-14 83.1 15.6 102 99-212 3-105 (126)
117 2fo7_A Synthetic consensus TPR 99.2 9.9E-10 3.4E-14 83.5 14.6 127 101-245 2-129 (136)
118 1p5q_A FKBP52, FK506-binding p 99.2 1.1E-09 3.7E-14 99.0 17.0 142 57-210 144-296 (336)
119 3gyz_A Chaperone protein IPGC; 99.2 6.8E-10 2.3E-14 88.6 13.5 103 96-210 32-135 (151)
120 3qou_A Protein YBBN; thioredox 99.2 4.7E-10 1.6E-14 99.1 13.9 163 61-245 118-281 (287)
121 3gyz_A Chaperone protein IPGC; 99.1 1.2E-09 4.2E-14 87.1 14.9 97 137-245 33-130 (151)
122 2hr2_A Hypothetical protein; a 99.1 1.3E-09 4.6E-14 87.0 14.8 114 60-173 11-136 (159)
123 1p5q_A FKBP52, FK506-binding p 99.1 5.8E-10 2E-14 100.9 14.2 156 72-245 125-291 (336)
124 3e4b_A ALGK; tetratricopeptide 99.1 1.8E-09 6.1E-14 101.6 17.7 171 30-245 194-384 (452)
125 3rkv_A Putative peptidylprolyl 99.1 1.4E-09 4.7E-14 87.1 13.9 107 97-209 8-127 (162)
126 3qwp_A SET and MYND domain-con 99.1 2.4E-09 8.2E-14 100.0 16.2 121 28-151 300-424 (429)
127 3e4b_A ALGK; tetratricopeptide 99.1 5E-09 1.7E-13 98.6 17.9 26 102-127 178-206 (452)
128 1xi4_A Clathrin heavy chain; a 99.1 1.8E-08 6.3E-13 103.9 23.0 196 54-278 1063-1305(1630)
129 3qww_A SET and MYND domain-con 99.1 4.5E-09 1.6E-13 98.1 16.7 115 71-185 309-430 (433)
130 3qwp_A SET and MYND domain-con 99.0 3.7E-09 1.3E-13 98.7 15.5 135 57-192 285-426 (429)
131 3sz7_A HSC70 cochaperone (SGT) 99.0 6.1E-09 2.1E-13 83.4 14.9 105 96-212 7-112 (164)
132 2fbn_A 70 kDa peptidylprolyl i 99.0 2E-09 6.9E-14 89.1 12.1 130 98-239 36-176 (198)
133 3upv_A Heat shock protein STI1 99.0 7.2E-09 2.5E-13 79.0 14.2 120 59-190 3-123 (126)
134 2vyi_A SGTA protein; chaperone 99.0 8.1E-09 2.8E-13 78.1 13.8 122 96-235 8-130 (131)
135 1elr_A TPR2A-domain of HOP; HO 99.0 1.2E-08 4E-13 77.3 14.7 104 99-208 3-108 (131)
136 2lni_A Stress-induced-phosphop 99.0 5.7E-09 1.9E-13 79.5 13.0 119 98-234 14-133 (133)
137 1kt0_A FKBP51, 51 kDa FK506-bi 99.0 6.4E-09 2.2E-13 98.0 15.4 152 73-242 247-408 (457)
138 3rkv_A Putative peptidylprolyl 99.0 6.7E-09 2.3E-13 83.1 13.4 108 58-171 9-129 (162)
139 3sz7_A HSC70 cochaperone (SGT) 99.0 8.3E-09 2.8E-13 82.7 13.6 99 135-245 6-105 (164)
140 2ooe_A Cleavage stimulation fa 99.0 2.6E-08 8.9E-13 95.2 19.1 215 61-298 273-512 (530)
141 2fbn_A 70 kDa peptidylprolyl i 99.0 4.1E-09 1.4E-13 87.3 11.8 131 57-199 35-176 (198)
142 1elr_A TPR2A-domain of HOP; HO 99.0 4.5E-08 1.5E-12 74.0 16.6 101 139-245 3-105 (131)
143 1ihg_A Cyclophilin 40; ppiase 99.0 8E-09 2.7E-13 94.7 14.3 130 99-240 222-362 (370)
144 2vgx_A Chaperone SYCD; alterna 99.0 5.4E-09 1.8E-13 82.8 11.1 93 141-245 22-115 (148)
145 2vgx_A Chaperone SYCD; alterna 99.0 2.8E-08 9.6E-13 78.6 15.2 104 97-212 18-122 (148)
146 2vyi_A SGTA protein; chaperone 98.9 3.1E-08 1.1E-12 74.7 14.7 124 54-195 6-130 (131)
147 2xcb_A PCRH, regulatory protei 98.9 3.7E-08 1.3E-12 77.0 15.3 104 97-212 15-119 (142)
148 3q49_B STIP1 homology and U bo 98.9 2.5E-08 8.6E-13 76.7 13.6 100 100-211 9-109 (137)
149 1kt0_A FKBP51, 51 kDa FK506-bi 98.9 1.5E-08 5E-13 95.5 14.6 137 58-206 266-413 (457)
150 1ihg_A Cyclophilin 40; ppiase 98.9 2.3E-08 7.7E-13 91.7 14.4 132 58-201 221-363 (370)
151 2e2e_A Formate-dependent nitri 98.9 1.2E-08 4.1E-13 82.6 11.2 120 73-210 23-146 (177)
152 1na0_A Designed protein CTPR3; 98.9 4.4E-08 1.5E-12 73.3 13.6 117 99-233 8-125 (125)
153 3qou_A Protein YBBN; thioredox 98.9 9.7E-09 3.3E-13 90.5 10.4 161 100-278 117-280 (287)
154 2r5s_A Uncharacterized protein 98.9 1.3E-08 4.4E-13 82.6 10.2 158 102-278 8-169 (176)
155 2c2l_A CHIP, carboxy terminus 98.9 5.7E-09 2E-13 91.8 8.5 101 60-172 4-105 (281)
156 2lni_A Stress-induced-phosphop 98.8 4.9E-08 1.7E-12 74.2 12.6 122 55-194 11-133 (133)
157 2e2e_A Formate-dependent nitri 98.8 2.5E-08 8.5E-13 80.7 11.1 117 111-245 21-141 (177)
158 2xev_A YBGF; tetratricopeptide 98.8 1.4E-07 4.8E-12 71.6 14.5 106 143-254 5-112 (129)
159 2xcb_A PCRH, regulatory protei 98.8 9.1E-08 3.1E-12 74.7 13.6 97 137-245 15-112 (142)
160 2l6j_A TPR repeat-containing p 98.8 3E-09 1E-13 78.8 4.4 100 140-245 4-104 (111)
161 1wao_1 Serine/threonine protei 98.8 1.7E-09 5.8E-14 102.5 3.5 127 99-243 5-134 (477)
162 1hxi_A PEX5, peroxisome target 98.8 3.7E-08 1.3E-12 75.1 10.2 95 103-209 20-115 (121)
163 3q49_B STIP1 homology and U bo 98.8 8.3E-08 2.8E-12 73.7 11.8 94 140-245 9-103 (137)
164 1na0_A Designed protein CTPR3; 98.8 2.5E-07 8.5E-12 69.0 14.2 118 58-193 7-125 (125)
165 2xev_A YBGF; tetratricopeptide 98.8 1E-07 3.4E-12 72.5 11.9 104 102-211 4-108 (129)
166 2ooe_A Cleavage stimulation fa 98.8 7.9E-08 2.7E-12 91.9 13.9 184 33-245 304-489 (530)
167 4f3v_A ESX-1 secretion system 98.8 1.4E-08 4.7E-13 89.0 7.6 192 28-245 19-234 (282)
168 3txn_A 26S proteasome regulato 98.8 3.6E-05 1.2E-09 70.4 30.3 266 4-277 4-279 (394)
169 3txn_A 26S proteasome regulato 98.7 1.9E-05 6.6E-10 72.2 28.3 217 61-278 20-245 (394)
170 1elw_A TPR1-domain of HOP; HOP 98.7 1.4E-07 4.7E-12 69.8 11.7 97 100-208 4-101 (118)
171 1b89_A Protein (clathrin heavy 98.7 2.4E-08 8.2E-13 92.6 8.8 191 54-278 46-265 (449)
172 2dba_A Smooth muscle cell asso 98.7 2.7E-07 9.1E-12 71.5 13.7 101 100-209 28-129 (148)
173 2if4_A ATFKBP42; FKBP-like, al 98.7 2.5E-08 8.5E-13 90.2 8.4 103 100-208 179-293 (338)
174 4f3v_A ESX-1 secretion system 98.7 1.3E-07 4.4E-12 82.8 12.3 219 59-296 7-251 (282)
175 1wao_1 Serine/threonine protei 98.7 5.7E-09 2E-13 98.9 3.9 125 61-203 7-134 (477)
176 2if4_A ATFKBP42; FKBP-like, al 98.7 3.6E-08 1.2E-12 89.1 8.6 141 58-210 177-330 (338)
177 1elw_A TPR1-domain of HOP; HOP 98.7 8.1E-07 2.8E-11 65.5 14.6 94 140-245 4-98 (118)
178 1hxi_A PEX5, peroxisome target 98.7 1.4E-07 4.8E-12 71.8 10.1 91 143-245 20-111 (121)
179 2l6j_A TPR repeat-containing p 98.6 1.6E-08 5.6E-13 74.7 3.8 98 100-203 4-102 (111)
180 1b89_A Protein (clathrin heavy 98.6 9.2E-08 3.1E-12 88.6 8.9 163 62-245 124-308 (449)
181 2dba_A Smooth muscle cell asso 98.6 9.1E-07 3.1E-11 68.4 13.4 104 59-171 27-131 (148)
182 3k9i_A BH0479 protein; putativ 98.6 1.3E-07 4.4E-12 71.2 8.2 89 113-210 3-92 (117)
183 1klx_A Cysteine rich protein B 98.6 5.7E-07 1.9E-11 70.2 11.8 106 114-245 9-123 (138)
184 2c2l_A CHIP, carboxy terminus 98.6 3.5E-07 1.2E-11 80.3 11.5 101 100-212 4-105 (281)
185 2kck_A TPR repeat; tetratricop 98.6 1.3E-07 4.4E-12 69.4 7.2 96 102-207 8-105 (112)
186 2kck_A TPR repeat; tetratricop 98.6 1.2E-07 4.3E-12 69.4 7.1 94 142-245 8-103 (112)
187 1klx_A Cysteine rich protein B 98.6 1E-06 3.6E-11 68.6 12.3 108 75-208 10-126 (138)
188 3k9i_A BH0479 protein; putativ 98.5 5E-07 1.7E-11 67.9 9.6 89 28-130 3-91 (117)
189 2kat_A Uncharacterized protein 98.4 3.6E-06 1.2E-10 62.7 11.0 90 32-138 2-91 (115)
190 2kat_A Uncharacterized protein 98.4 4E-06 1.4E-10 62.5 10.6 65 142-212 21-86 (115)
191 3ma5_A Tetratricopeptide repea 98.4 7E-06 2.4E-10 59.8 11.7 69 141-215 8-77 (100)
192 1na3_A Designed protein CTPR2; 98.4 4.5E-06 1.5E-10 58.8 10.4 83 139-233 8-91 (91)
193 3ma5_A Tetratricopeptide repea 98.3 7.5E-06 2.6E-10 59.7 11.4 76 60-141 7-82 (100)
194 1na3_A Designed protein CTPR2; 98.3 6.9E-06 2.4E-10 57.8 10.1 84 98-193 7-91 (91)
195 1zu2_A Mitochondrial import re 98.3 1.3E-06 4.4E-11 69.5 6.6 87 73-171 15-123 (158)
196 1zu2_A Mitochondrial import re 98.2 1.4E-06 4.8E-11 69.3 5.7 87 29-132 16-123 (158)
197 3dra_A Protein farnesyltransfe 98.2 5.9E-05 2E-09 66.9 16.5 188 67-278 74-283 (306)
198 3mv2_B Coatomer subunit epsilo 98.2 6.3E-05 2.1E-09 66.6 15.5 167 64-245 104-279 (310)
199 2wpv_A GET4, UPF0363 protein Y 98.1 0.0043 1.5E-07 54.8 25.3 220 54-294 27-287 (312)
200 4e6h_A MRNA 3'-END-processing 97.9 0.0026 8.8E-08 62.6 23.0 220 63-299 346-588 (679)
201 3mv2_B Coatomer subunit epsilo 97.9 0.00019 6.4E-09 63.5 13.4 180 102-296 102-307 (310)
202 4b4t_P 26S proteasome regulato 97.8 0.013 4.4E-07 54.6 25.5 117 99-215 136-254 (445)
203 3ffl_A Anaphase-promoting comp 97.8 0.0016 5.4E-08 51.7 15.5 107 145-251 26-154 (167)
204 2v5f_A Prolyl 4-hydroxylase su 97.8 0.00021 7.2E-09 52.4 9.9 67 143-209 8-76 (104)
205 2v5f_A Prolyl 4-hydroxylase su 97.7 0.00022 7.7E-09 52.2 8.5 65 181-245 7-72 (104)
206 2kc7_A BFR218_protein; tetratr 97.7 0.00012 4.1E-09 52.5 6.9 58 146-209 6-65 (99)
207 3lpz_A GET4 (YOR164C homolog); 97.6 0.029 1E-06 49.8 27.9 227 53-298 25-298 (336)
208 4e6h_A MRNA 3'-END-processing 97.6 0.0025 8.7E-08 62.6 17.9 200 29-253 357-576 (679)
209 1dce_A Protein (RAB geranylger 97.6 0.00038 1.3E-08 67.1 11.9 173 29-236 43-243 (567)
210 2kc7_A BFR218_protein; tetratr 97.6 0.00044 1.5E-08 49.3 9.6 57 183-245 4-61 (99)
211 3dra_A Protein farnesyltransfe 97.5 0.0049 1.7E-07 54.5 17.0 152 70-245 43-212 (306)
212 4b4t_P 26S proteasome regulato 97.5 0.013 4.5E-07 54.5 20.8 107 139-245 136-244 (445)
213 3ffl_A Anaphase-promoting comp 97.5 0.0034 1.2E-07 49.8 13.7 103 102-204 22-147 (167)
214 4g26_A Pentatricopeptide repea 97.4 0.0054 1.8E-07 58.1 16.8 169 61-245 27-201 (501)
215 3q7a_A Farnesyltransferase alp 97.3 0.0038 1.3E-07 56.1 13.8 188 67-278 95-327 (349)
216 1dce_A Protein (RAB geranylger 97.3 0.0026 9E-08 61.2 13.0 146 76-245 45-218 (567)
217 4g26_A Pentatricopeptide repea 97.3 0.01 3.5E-07 56.1 16.9 95 101-205 106-201 (501)
218 3dss_A Geranylgeranyl transfer 97.3 0.045 1.5E-06 48.8 19.7 180 76-278 90-300 (331)
219 3ly7_A Transcriptional activat 97.2 0.0041 1.4E-07 56.1 12.3 143 54-209 191-340 (372)
220 3ly7_A Transcriptional activat 97.2 0.016 5.6E-07 52.2 15.8 143 9-171 195-342 (372)
221 1pc2_A Mitochondria fission pr 97.1 0.012 4E-07 46.2 12.5 80 179-262 32-115 (152)
222 3q7a_A Farnesyltransferase alp 97.1 0.024 8.3E-07 50.9 16.2 220 53-299 50-292 (349)
223 3dss_A Geranylgeranyl transfer 97.1 0.033 1.1E-06 49.6 16.8 155 67-245 115-301 (331)
224 2wpv_A GET4, UPF0363 protein Y 96.5 0.38 1.3E-05 42.3 19.6 176 28-209 26-218 (312)
225 3bee_A Putative YFRE protein; 96.5 0.028 9.7E-07 40.0 9.8 61 179-245 6-69 (93)
226 4b4t_R RPN7, 26S proteasome re 96.5 0.036 1.2E-06 51.3 12.9 111 99-211 130-240 (429)
227 3bee_A Putative YFRE protein; 96.4 0.014 4.8E-07 41.6 7.8 65 141-211 7-75 (93)
228 3mkq_A Coatomer beta'-subunit; 96.4 0.046 1.6E-06 54.1 14.2 106 69-203 661-773 (814)
229 4b4t_R RPN7, 26S proteasome re 96.4 0.02 6.7E-07 53.1 10.7 108 139-249 130-239 (429)
230 3mkq_A Coatomer beta'-subunit; 96.2 0.48 1.6E-05 46.7 20.4 107 110-245 662-775 (814)
231 3u64_A Protein TP_0956; tetrat 96.1 0.18 6.3E-06 43.8 14.5 82 155-245 179-266 (301)
232 4b4t_S RPN3, 26S proteasome re 95.8 0.0094 3.2E-07 56.0 5.4 200 72-278 148-366 (523)
233 1pc2_A Mitochondria fission pr 95.4 0.24 8.1E-06 38.7 11.4 67 140-210 32-102 (152)
234 1nzn_A CGI-135 protein, fissio 95.3 0.15 5E-06 38.5 9.5 81 179-263 35-119 (126)
235 3o48_A Mitochondria fission 1 94.3 1 3.6E-05 34.0 11.8 80 179-263 40-123 (134)
236 3mkq_B Coatomer subunit alpha; 94.2 1.5 5.1E-05 35.0 13.3 23 224-246 94-116 (177)
237 2yin_A DOCK2, dedicator of cyt 94.0 1.9 6.7E-05 39.7 15.6 126 102-231 17-145 (436)
238 2wm9_A Dedicator of cytokinesi 93.0 0.96 3.3E-05 41.6 11.7 94 58-151 9-139 (428)
239 2uy1_A Cleavage stimulation fa 93.0 5.5 0.00019 37.1 17.2 186 61-278 214-409 (493)
240 4b4t_O 26S proteasome regulato 92.8 1.9 6.4E-05 39.1 13.2 172 107-278 83-272 (393)
241 4h7y_A Dual specificity protei 92.6 1.1 3.8E-05 34.8 9.6 87 117-209 36-124 (161)
242 3mkq_B Coatomer subunit alpha; 92.5 2.8 9.6E-05 33.4 12.3 45 71-126 16-60 (177)
243 2yin_A DOCK2, dedicator of cyt 92.4 1.8 6.1E-05 39.9 12.6 99 54-152 29-145 (436)
244 1y8m_A FIS1; mitochondria, unk 92.3 3 0.0001 31.9 12.2 79 179-262 39-121 (144)
245 3lpz_A GET4 (YOR164C homolog); 92.1 6 0.0002 34.9 25.0 229 28-264 25-292 (336)
246 3t5x_A PCI domain-containing p 92.0 0.26 8.9E-06 40.5 5.9 92 178-278 13-104 (203)
247 3u64_A Protein TP_0956; tetrat 90.2 8.6 0.0003 33.3 19.4 81 194-278 178-265 (301)
248 4b4t_S RPN3, 26S proteasome re 89.9 1.6 5.6E-05 40.9 9.7 140 94-245 225-367 (523)
249 1ya0_A SMG-7 transcript varian 89.2 1.3 4.4E-05 41.6 8.6 61 141-207 153-214 (497)
250 4gns_B Protein CSD3, chitin bi 89.2 2.9 9.9E-05 41.3 11.3 63 180-248 338-400 (754)
251 1nzn_A CGI-135 protein, fissio 89.2 4 0.00014 30.5 9.6 66 141-210 36-105 (126)
252 2crb_A Nuclear receptor bindin 88.4 1.7 5.8E-05 30.4 6.4 38 95-132 10-47 (97)
253 2ff4_A Probable regulatory pro 87.9 3.3 0.00011 37.4 10.2 60 180-245 172-231 (388)
254 2uy1_A Cleavage stimulation fa 86.3 21 0.00071 33.1 19.4 173 77-277 196-378 (493)
255 3o48_A Mitochondria fission 1 85.1 5 0.00017 30.3 8.1 65 141-210 41-109 (134)
256 1y8m_A FIS1; mitochondria, unk 84.9 4.5 0.00015 30.9 7.8 64 140-208 39-106 (144)
257 1ya0_A SMG-7 transcript varian 84.7 2.6 8.8E-05 39.5 7.8 61 61-127 153-213 (497)
258 3spa_A Mtrpol, DNA-directed RN 84.6 5.5 0.00019 40.7 10.5 95 179-277 127-225 (1134)
259 2ff4_A Probable regulatory pro 84.5 7.3 0.00025 35.1 10.7 62 102-169 173-235 (388)
260 2wm9_A Dedicator of cytokinesi 83.1 10 0.00035 34.7 11.0 45 160-204 89-133 (428)
261 4fhn_B Nucleoporin NUP120; pro 82.5 3.4 0.00012 42.9 8.5 99 104-203 846-962 (1139)
262 2v6x_A Vacuolar protein sortin 81.0 3.5 0.00012 28.4 5.5 38 27-70 6-43 (85)
263 3spa_A Mtrpol, DNA-directed RN 79.0 18 0.0006 37.2 11.7 103 98-207 125-229 (1134)
264 4fhn_B Nucleoporin NUP120; pro 78.6 27 0.00091 36.3 13.6 128 144-274 846-992 (1139)
265 3t5v_B Nuclear mRNA export pro 78.5 3.9 0.00013 37.8 6.5 135 138-278 174-320 (455)
266 2crb_A Nuclear receptor bindin 76.3 9.3 0.00032 26.7 6.3 35 176-210 12-46 (97)
267 2w2u_A Hypothetical P60 katani 75.7 5.8 0.0002 27.2 5.2 34 30-69 15-48 (83)
268 2cpt_A SKD1 protein, vacuolar 74.8 5.2 0.00018 29.5 5.1 35 30-70 14-48 (117)
269 2v6y_A AAA family ATPase, P60 74.5 6.4 0.00022 26.9 5.2 33 31-69 8-40 (83)
270 4gns_B Protein CSD3, chitin bi 74.1 22 0.00075 35.1 10.8 52 147-204 344-396 (754)
271 1wfd_A Hypothetical protein 15 71.9 7.7 0.00026 27.2 5.2 35 30-70 11-45 (93)
272 4h7y_A Dual specificity protei 71.2 34 0.0012 26.5 10.2 88 32-129 36-123 (161)
273 4a5x_A MITD1, MIT domain-conta 71.1 8.4 0.00029 26.6 5.2 33 31-69 13-45 (86)
274 2w2u_A Hypothetical P60 katani 68.5 12 0.00041 25.6 5.5 21 111-131 30-50 (83)
275 4a5x_A MITD1, MIT domain-conta 68.2 17 0.00057 25.0 6.2 26 107-132 23-48 (86)
276 2r17_C Vacuolar protein sortin 65.0 68 0.0023 27.6 27.5 189 29-217 19-233 (298)
277 1wfd_A Hypothetical protein 15 64.7 22 0.00075 24.8 6.4 21 111-131 26-46 (93)
278 2v6y_A AAA family ATPase, P60 64.6 20 0.0007 24.3 6.1 21 111-131 22-42 (83)
279 4gq2_M Nucleoporin NUP120; bet 64.0 28 0.00097 35.3 9.6 24 104-127 844-867 (950)
280 2v6x_A Vacuolar protein sortin 63.4 24 0.00082 24.0 6.3 20 112-131 25-44 (85)
281 2cpt_A SKD1 protein, vacuolar 63.2 15 0.0005 27.0 5.4 19 113-131 31-49 (117)
282 3re2_A Predicted protein; meni 60.2 48 0.0016 29.5 8.8 94 117-212 232-329 (472)
283 1zb1_A BRO1 protein; AIP1, BRO 59.6 95 0.0032 27.7 11.4 35 97-131 120-160 (392)
284 4b4t_O 26S proteasome regulato 58.7 1E+02 0.0034 27.6 13.7 68 178-245 126-195 (393)
285 2wb7_A PT26-6P; extra chromoso 58.3 13 0.00043 34.5 5.1 30 99-129 487-516 (526)
286 3kae_A CDC27, possible protein 56.9 65 0.0022 25.6 8.2 76 53-128 46-142 (242)
287 2wb7_A PT26-6P; extra chromoso 54.3 62 0.0021 30.0 8.9 13 117-129 485-497 (526)
288 1om2_A Protein (mitochondrial 53.8 18 0.00061 25.5 4.2 29 183-211 24-52 (95)
289 3ax2_A Mitochondrial import re 53.8 12 0.0004 25.0 3.1 29 183-211 21-49 (73)
290 2qx5_A Nucleoporin NIC96; mRNA 53.4 1.2E+02 0.0042 29.3 11.5 95 103-204 446-563 (661)
291 3u84_A Menin; MLL, JUND, ledgf 52.9 58 0.002 29.6 8.3 94 117-212 254-351 (550)
292 4gq4_A Menin; tumor suppressor 51.4 48 0.0016 30.1 7.5 96 115-212 237-336 (489)
293 2rpa_A Katanin P60 ATPase-cont 50.9 18 0.00063 24.4 3.8 29 182-210 15-43 (78)
294 3rau_A Tyrosine-protein phosph 50.1 1.4E+02 0.0046 26.5 12.1 36 96-131 113-157 (363)
295 4ady_A RPN2, 26S proteasome re 47.0 2.4E+02 0.0084 28.5 18.6 29 65-93 75-103 (963)
296 2r17_C Vacuolar protein sortin 46.1 1.4E+02 0.0049 25.6 20.6 157 54-210 93-269 (298)
297 2ijq_A Hypothetical protein; s 41.1 50 0.0017 25.6 5.4 62 184-245 37-101 (161)
298 2pmr_A Uncharacterized protein 37.7 97 0.0033 21.2 5.9 27 218-244 38-64 (87)
299 3r9m_A BRO1 domain-containing 37.4 2.2E+02 0.0074 25.2 11.5 24 221-244 255-278 (376)
300 2cwy_A Hypothetical protein TT 37.1 1E+02 0.0035 21.3 7.6 59 185-245 7-65 (94)
301 3kae_A CDC27, possible protein 36.8 1.6E+02 0.0054 23.4 10.0 62 184-245 67-140 (242)
302 1wy6_A Hypothetical protein ST 36.7 1.4E+02 0.0048 22.8 7.1 29 100-128 125-153 (172)
303 2dl1_A Spartin; SPG20, MIT, st 36.5 63 0.0022 23.5 5.0 13 117-129 20-32 (116)
304 2oo2_A Hypothetical protein AF 35.9 29 0.00099 23.9 2.9 27 217-243 33-59 (86)
305 2rpa_A Katanin P60 ATPase-cont 35.6 47 0.0016 22.3 3.9 28 104-131 16-43 (78)
306 3ax2_A Mitochondrial import re 32.6 37 0.0013 22.5 3.0 24 106-129 23-46 (73)
307 3re2_A Predicted protein; meni 30.7 2.9E+02 0.0099 24.6 10.6 50 119-173 276-330 (472)
308 3t5v_B Nuclear mRNA export pro 30.6 2.4E+02 0.0081 25.8 9.1 90 155-245 142-246 (455)
309 3iqu_A 14-3-3 protein sigma; s 30.6 2.3E+02 0.0078 23.4 10.0 54 155-209 149-206 (236)
310 1om2_A Protein (mitochondrial 29.7 67 0.0023 22.5 4.0 25 106-130 26-50 (95)
311 2jpw_A Troponin I, cardiac mus 29.5 19 0.00065 19.2 0.9 11 301-311 10-20 (32)
312 2jpu_A ORF C02003 protein; sol 29.3 63 0.0021 24.0 4.1 31 32-68 5-35 (129)
313 4gq4_A Menin; tumor suppressor 27.2 3.6E+02 0.012 24.5 9.8 54 118-172 282-336 (489)
314 1vh6_A Flagellar protein FLIS; 26.4 2.1E+02 0.0071 21.6 8.4 20 72-91 45-64 (145)
315 2dl1_A Spartin; SPG20, MIT, st 26.3 80 0.0027 23.0 4.1 13 155-167 19-31 (116)
316 4gq2_M Nucleoporin NUP120; bet 25.0 3.2E+02 0.011 27.5 9.8 89 144-233 844-950 (950)
317 3u84_A Menin; MLL, JUND, ledgf 24.6 4E+02 0.014 24.2 10.6 50 119-173 298-352 (550)
318 2xze_A STAM-binding protein; h 22.6 1.7E+02 0.0057 22.1 5.5 35 97-131 37-71 (146)
319 2ymb_A MITD1, MIT domain-conta 22.3 19 0.00063 30.4 0.0 35 29-69 18-52 (257)
320 3iqc_A FLIS, flagellar protein 21.6 2.5E+02 0.0084 20.7 9.0 20 72-91 48-67 (131)
321 3r9m_A BRO1 domain-containing 21.1 4.1E+02 0.014 23.3 8.7 17 30-46 141-157 (376)
322 3u8v_A Metal-binding protein S 21.0 2.1E+02 0.0072 19.7 6.5 41 7-47 23-68 (93)
No 1
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=100.00 E-value=3.9e-37 Score=276.92 Aligned_cols=279 Identities=38% Similarity=0.571 Sum_probs=255.4
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI 107 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~ 107 (325)
++++++|.+++++|.+..++++|.|+++++.|+++|.+++.+|...|++++|+.+|.++++++.+.+++..++.++.++|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46899999999999999988888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy10061 108 MMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAA 186 (325)
Q Consensus 108 ~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg 186 (325)
.+|..+|++++|+.+|++|++++...|++..++.++.++|.+|.. + +++|+.+|++|+++++..++......++.++|
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 7 99999999999999999888888889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh---cccCCChHHHHHHHHHHH
Q psy10061 187 RMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW---GNCCEAPEVQTLEKLLQA 263 (325)
Q Consensus 187 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~---~~~~~~~e~~~l~~L~~a 263 (325)
.+|..+|+|++|+.+|++++.+.++.+.......+++++|.+++.+|++++|..+|+++ +.|..+.++.++..|+.+
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~~l~~~ 242 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQA 242 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999988777677778999999999999999999999997 677788899999999999
Q ss_pred HhcCCHHHHHHHhcChhhhcccHHHHHHhhcCCCCCCCCCCCcc
Q psy10061 264 FDEEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRP 307 (325)
Q Consensus 264 ~~~gd~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 307 (325)
+..||.+.+..+++-+.+..++++..++++++.+|++++.+|++
T Consensus 243 ~~~~d~~~~~~~~~~~~~~~ld~~~~~~~~~l~~~~~~~~~~~~ 286 (307)
T 2ifu_A 243 YDEQDEEQLLRVCRSPLVTYMDNDYAKLAISLKVPGGGGGKKKP 286 (307)
T ss_dssp HHTTCHHHHHHHTTSHHHHTSCHHHHHHHHTCCCC---------
T ss_pred HHhcCHHHHHHHHhCchhhhhhHHHHHHHHhCCCCCCCcCCCCC
Confidence 99999999999544488899999999999999999987666653
No 2
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=100.00 E-value=3.2e-33 Score=249.58 Aligned_cols=263 Identities=19% Similarity=0.189 Sum_probs=222.7
Q ss_pred HHHHHHHHHhhhccc-----ccCCC-CC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061 34 GMEYVKSAEKHLKTS-----LLKWK-PD-YDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA 106 (325)
Q Consensus 34 A~~l~~~A~~~~~~~-----~~~~~-~~-~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~ 106 (325)
|.+++++|.+.++++ +|.|+ ++ +++|+++|++++.+|...|++++|+.+|.++++++.+.+++...+.++.++
T Consensus 4 a~~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 83 (292)
T 1qqe_A 4 PVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEA 83 (292)
T ss_dssp HHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCCcchhcCCCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 444444444444432 33444 44 888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C-HHHHHHHHHHHHHHHhcCCChhhHHHHHHH
Q psy10061 107 IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL-K-SDAALTLYSRAADVAHGEDNYKQAAEYISR 184 (325)
Q Consensus 107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~-~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~ 184 (325)
|.+|..+|++++|+.+|++|+.++...|++..++.++.++|.+|... + +++|+.+|++|+++++..++......++.+
T Consensus 84 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 163 (292)
T 1qqe_A 84 YKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIK 163 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999985 7 999999999999999988887777889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----cccCCChHHHHHHH
Q psy10061 185 AARMCVRVKEFDKAADLIRQEIGYHQESEHL-LAIGRLAVALVLVQLARGDTVAAEKAFKEW----GNCCEAPEVQTLEK 259 (325)
Q Consensus 185 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~~~~~e~~~l~~ 259 (325)
+|.+|..+|+|++|+.+|++++.+.+..+.. .....+++++|.|+..+|++++|..+|+++ +.|..+.++..+..
T Consensus 164 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~ 243 (292)
T 1qqe_A 164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKS 243 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Confidence 9999999999999999999999987655432 344557889999999999999999999997 67777788889999
Q ss_pred HHHHHhcCCHHHHHHHhcC-hhhhcccHHHHHHhhcCC
Q psy10061 260 LLQAFDEEDPEGARQALND-PFIKHMDVEYSRLARDLP 296 (325)
Q Consensus 260 L~~a~~~gd~~~~~~~~~~-~~~~~l~~~~~~~~~~l~ 296 (325)
|+.++..+|.+.+.+++.. ..+..++++...+..+++
T Consensus 244 l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k 281 (292)
T 1qqe_A 244 LIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIK 281 (292)
T ss_dssp HHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 9999988888888888887 667788999888877665
No 3
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.94 E-value=6.3e-25 Score=195.70 Aligned_cols=250 Identities=14% Similarity=0.124 Sum_probs=199.5
Q ss_pred hhhhHHHHHHhhchhc------ccccc--ccHHHHHHHHHHHHhhhcccccCCCCCHHHH--------------------
Q psy10061 8 EEGMEYVKSAEKHSLS------TMTSD--RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSA-------------------- 59 (325)
Q Consensus 8 ~~~~~~~~~ae~~~~~------~~~~~--~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A-------------------- 59 (325)
.||++++++|||++++ ||.++ +++++|+++|.+|..++.. .++|++|
T Consensus 2 ~~a~~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~ 76 (292)
T 1qqe_A 2 SDPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRL-----RKELNLAGDSFLKAADYQKKAGNEDEA 76 (292)
T ss_dssp CCHHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHHHHHHHH-----TTCTHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHHHHhCcCCCcchhcCCCCCccHHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 5899999999999994 56553 3699999999999877754 2444444
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCHHH
Q psy10061 60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKEL-NDLTDVENLAKQAATLFLEQGNREA 138 (325)
Q Consensus 60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~-g~~~eA~~~~~~A~~~~~~~g~~~~ 138 (325)
+..|..+|.+|...|++++|+.+|.+++.++...+++..++.++.++|.+|... |++++|+.+|++|++++...++...
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 455555677788899999999999999999999999999999999999999996 9999999999999999999999888
Q ss_pred HHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHH
Q psy10061 139 ASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY-KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLL 216 (325)
Q Consensus 139 aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 216 (325)
.+.++.++|.++...+ +++|+.+|++++++....+.. .....++.++|.++..+|++++|+.+|++++.+.+.....
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~- 235 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS- 235 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc-
Confidence 8999999999999988 999999999999988776543 3556688999999999999999999999999887665432
Q ss_pred HHHHHHHHHHHHHH--hcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHH
Q psy10061 217 AIGRLAVALVLVQL--ARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAF 264 (325)
Q Consensus 217 ~~~~~~~~lg~~~~--~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~ 264 (325)
.....+..++.++. ..+++.+|+..|+++... +.....++.++.+.+
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l-~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL-DKWKITILNKIKESI 284 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc-HHHHHHHHHHHHHHh
Confidence 12345566777665 457788888888876332 223345666666665
No 4
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.93 E-value=1.3e-23 Score=194.37 Aligned_cols=257 Identities=12% Similarity=0.021 Sum_probs=225.6
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI 107 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~ 107 (325)
.+++++|+++++++.+..+. .++......++..+|.+|...|++++|..+|.+++.+....++....+.++.++|
T Consensus 99 ~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 173 (411)
T 4a1s_A 99 LGDYNKAMQYHKHDLTLAKS-----MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLG 173 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH-----ccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 35777888888887777665 3566677778888889999999999999999999999999999999999999999
Q ss_pred HHHHHcCC-----------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHH
Q psy10061 108 MMCKELND-----------------LTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVA 169 (325)
Q Consensus 108 ~~y~~~g~-----------------~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~ 169 (325)
.+|...|+ +++|+.++++++.+....++....+.++..+|.+|...+ +++|+.+|++++++.
T Consensus 174 ~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (411)
T 4a1s_A 174 NVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA 253 (411)
T ss_dssp HHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999999999999999887 999999999999999
Q ss_pred hcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----
Q psy10061 170 HGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW---- 245 (325)
Q Consensus 170 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~---- 245 (325)
...++......++..+|.+|..+|++++|+.+|++++.+.+..++......++..+|.++...|++++|..+|+++
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 254 REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9888877778899999999999999999999999999999988877777889999999999999999999999997
Q ss_pred ccc-CCChHHHHHHHHHHHH-hcCCHHHHHHHhcC--hhhhcccHHHH
Q psy10061 246 GNC-CEAPEVQTLEKLLQAF-DEEDPEGARQALND--PFIKHMDVEYS 289 (325)
Q Consensus 246 ~~~-~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~--~~~~~l~~~~~ 289 (325)
+.. .......++..|+.++ ..|+.+.+...+++ .++..++....
T Consensus 334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 381 (411)
T 4a1s_A 334 QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXXXXX 381 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 222 2334556788899987 69999999999998 66666655433
No 5
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.93 E-value=1.3e-23 Score=188.58 Aligned_cols=234 Identities=18% Similarity=0.141 Sum_probs=194.6
Q ss_pred ccchhhhhhHHHHHHhhchh-ccccccccHHHHHHHHHHHHhhhccc------c---------cCCCCCHHHHHHHHHHH
Q psy10061 3 SDRKKEEGMEYVKSAEKHSL-STMTSDRKKEEGMEYVKSAEKHLKTS------L---------LKWKPDYDSAADDYSKA 66 (325)
Q Consensus 3 ~~~~~~~~~~~~~~ae~~~~-~~~~~~~~~~eA~~l~~~A~~~~~~~------~---------~~~~~~~~~A~~~y~~a 66 (325)
+.++..+|++++++|+|.++ +||.+++++++|.++|.++..+++.. + ..-.++...++.+|.++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45778999999999999998 46665678999999999987766531 0 00024445555666667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061 67 ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKG 146 (325)
Q Consensus 67 ~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~l 146 (325)
|.+|...|++++|+.+|.+++.++...+++...+.++.++|.+|.. |++++|+.+|++|++++...|+....+.++.++
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 7788889999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q psy10061 147 AKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVAL 225 (325)
Q Consensus 147 g~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 225 (325)
|.+|...+ +++|+.+|++++.+.+..+.......++..+|.++..+|++++|+.+|++++ +.+..... .....+..+
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~-~e~~~l~~l 239 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS-EDCAALEDL 239 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS-HHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC-HHHHHHHHH
Confidence 99999988 9999999999999999887766667789999999999999999999999999 65544321 233445566
Q ss_pred HHHHHhcCCHHHHHH
Q psy10061 226 VLVQLARGDTVAAEK 240 (325)
Q Consensus 226 g~~~~~~gd~~~A~~ 240 (325)
+.++ ..||.+.+.+
T Consensus 240 ~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 240 LQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHH-HTTCHHHHHH
T ss_pred HHHH-HhcCHHHHHH
Confidence 6655 5788766665
No 6
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.93 E-value=8.2e-23 Score=188.27 Aligned_cols=243 Identities=12% Similarity=0.086 Sum_probs=218.6
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKS-AYHAAKHLEQA 106 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~-~~~aa~~~~~~ 106 (325)
.+++++|+++|++|.++.+. .++....+.+|..+|.+|...|++++|..++.++++++.+.++ ....+.++.++
T Consensus 116 ~g~~~~A~~~~~~al~~~~~-----~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 116 QREYLSAIKFFKKAESKLIF-----VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp TTCHHHHHHHHHHHHTTGGG-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 47999999999999999877 4777888999999999999999999999999999999999987 78899999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy10061 107 IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA 185 (325)
Q Consensus 107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l 185 (325)
|.+|..+|++++|+.++++|+++....++....+.++.++|.+|...+ +++|+.+|++|+++++..++......++.++
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988 9999999999999999988755568899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHhhcccCCChHHHHHHHHHH
Q psy10061 186 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD---TVAAEKAFKEWGNCCEAPEVQTLEKLLQ 262 (325)
Q Consensus 186 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd---~~~A~~~~~~~~~~~~~~e~~~l~~L~~ 262 (325)
|.+|..+|++++|+.++++++.+.+..+++..... +..+|.++...|+ +.+|...+++.... .....+...|+.
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~al~~~~~~~~~--~~~~~~~~~la~ 347 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE-FEFLKSLYLSGPDEEAIQGFFDFLESKMLY--ADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHTSSCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHHCcCH--HHHHHHHHHHHH
Confidence 99999999999999999999999998887766655 5679999999999 78888888776221 233456778999
Q ss_pred HH-hcCCHHHHHHHhcC
Q psy10061 263 AF-DEEDPEGARQALND 278 (325)
Q Consensus 263 a~-~~gd~~~~~~~~~~ 278 (325)
.+ ..|+.+.+...+++
T Consensus 348 ~y~~~g~~~~A~~~~~~ 364 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLK 364 (383)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 98 59999999998876
No 7
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.92 E-value=2.7e-22 Score=178.63 Aligned_cols=268 Identities=12% Similarity=0.037 Sum_probs=223.8
Q ss_pred hhhhhhHHHHHHhhchhc--------------cccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHH
Q psy10061 6 KKEEGMEYVKSAEKHSLS--------------TMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFK 71 (325)
Q Consensus 6 ~~~~~~~~~~~ae~~~~~--------------~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~ 71 (325)
...+|..++.+|-+.-.. .+...+++++|++++.++....+. .++....+..+..+|.+|.
T Consensus 20 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~l~~~~~ 94 (338)
T 3ro2_A 20 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART-----IGDQLGEAKASGNLGNTLK 94 (338)
T ss_dssp CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-----ccccHHHHHHHHHHHHHHH
Confidence 356667777766554211 122346888899999988888766 2666777888888899999
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHH
Q psy10061 72 GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELND--------------------LTDVENLAKQAATLFL 131 (325)
Q Consensus 72 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~--------------------~~eA~~~~~~A~~~~~ 131 (325)
..|++++|..++.+++.+....++....+.++.++|.+|...|+ +++|+.++++++.+..
T Consensus 95 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~ 174 (338)
T 3ro2_A 95 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT 174 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888889999999999999999 9999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 132 EQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 132 ~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 210 (325)
..++....+.++..+|.++...+ +++|+.++++++++....++......++..+|.++...|++++|+.++++++.+.+
T Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 254 (338)
T 3ro2_A 175 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 254 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 99998888899999999998887 99999999999999988887777788899999999999999999999999999988
Q ss_pred HcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----ccc-CCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 211 ESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW----GNC-CEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 211 ~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~-~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
..++......++..+|.++...|++++|..+++++ +.. .......++..|+.++ ..|+.+.+...+++
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 255 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 88777777788889999999999999999999986 222 2333456777888887 58999999988876
No 8
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.92 E-value=4.1e-22 Score=183.04 Aligned_cols=268 Identities=11% Similarity=0.034 Sum_probs=235.3
Q ss_pred hhhhhhHHHHHHhhchhc--------------cccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHH
Q psy10061 6 KKEEGMEYVKSAEKHSLS--------------TMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFK 71 (325)
Q Consensus 6 ~~~~~~~~~~~ae~~~~~--------------~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~ 71 (325)
...+|..++.+|-+.... .+...+++++|++++.+|....+. .++....+.++..+|.+|.
T Consensus 24 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~la~~~~ 98 (406)
T 3sf4_A 24 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART-----IGDQLGEAKASGNLGNTLK 98 (406)
T ss_dssp CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHHHH
Confidence 356677777776654221 122346899999999999888876 3677788889999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHH
Q psy10061 72 GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELND--------------------LTDVENLAKQAATLFL 131 (325)
Q Consensus 72 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~--------------------~~eA~~~~~~A~~~~~ 131 (325)
..|++++|..++.+++.+....++....+.++.++|.+|...|+ +++|+.++++++.+..
T Consensus 99 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 178 (406)
T 3sf4_A 99 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVT 178 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 132 EQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 132 ~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 210 (325)
..++....+.++.++|.++...+ +++|+.++++++++....++......++..+|.+|..+|++++|+.+|++++.+.+
T Consensus 179 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 258 (406)
T 3sf4_A 179 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 258 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999888 99999999999999999888888888999999999999999999999999999999
Q ss_pred HcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----ccc-CCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 211 ESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW----GNC-CEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 211 ~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~-~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
..++......++..+|.++...|++++|..+|+++ +.. .......++..++.++ ..|+.+.+...+++
T Consensus 259 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 259 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88887777889999999999999999999999997 222 2333456778889987 69999999999887
No 9
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.91 E-value=1.3e-21 Score=179.81 Aligned_cols=259 Identities=12% Similarity=0.053 Sum_probs=227.3
Q ss_pred hhhhhhHHHHHHhhchhc----------------cccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHH
Q psy10061 6 KKEEGMEYVKSAEKHSLS----------------TMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATC 69 (325)
Q Consensus 6 ~~~~~~~~~~~ae~~~~~----------------~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~ 69 (325)
+..+|..++.+|-+.... .+...+++++|+.++.++.+.... .++....+.++..+|.+
T Consensus 62 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 62 DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE-----LNDKVGEARALYNLGNV 136 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----cccccchHHHHHHHHHH
Confidence 356777777776554321 123347999999999999998876 36777788999999999
Q ss_pred HHhcCC--------------------HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 70 FKGAKS--------------------FQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATL 129 (325)
Q Consensus 70 y~~~g~--------------------~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~ 129 (325)
|...|+ +++|..+|.+++.+....++....+.++.++|.+|...|++++|+.++++++.+
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 130 FLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 208 (325)
Q Consensus 130 ~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 208 (325)
....++....+.++.++|.+|...+ +++|+.+|++++++....++......++..+|.+|...|++++|+.+|++++.+
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999887 999999999999999998888888889999999999999999999999999999
Q ss_pred HHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----ccc-CCChHHHHHHHHHHHH-hcCCH
Q psy10061 209 HQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW----GNC-CEAPEVQTLEKLLQAF-DEEDP 269 (325)
Q Consensus 209 ~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~-~~~~e~~~l~~L~~a~-~~gd~ 269 (325)
.+..++......++..+|.+|...|++++|..+|+++ ... .......++..|+.++ ..|+.
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 9998887778889999999999999999999999997 222 2334566777888876 46655
No 10
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.90 E-value=1.4e-21 Score=179.88 Aligned_cols=242 Identities=16% Similarity=0.076 Sum_probs=214.1
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKS-AYHAAKHLEQA 106 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~-~~~aa~~~~~~ 106 (325)
.+++++|+++|.+|.++.+. .++....+.++..+|.+|...|++++|..++.++++++.+.++ ....+.++.++
T Consensus 114 ~g~~~~A~~~~~~al~~~~~-----~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPF-----VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGG-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhh-----CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 47999999999999999876 3777888999999999999999999999999999999999876 66889999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy10061 107 IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA 185 (325)
Q Consensus 107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l 185 (325)
|.+|..+|++++|+.++++|+++....++....+.++.++|.+|...+ +++|+.+|++++++++..+++.. ..++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHH
Confidence 999999999999999999999999999999999999999999999887 99999999999999998777666 7899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHhhcccCCChHHHHHHHHHH
Q psy10061 186 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD---TVAAEKAFKEWGNCCEAPEVQTLEKLLQ 262 (325)
Q Consensus 186 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd---~~~A~~~~~~~~~~~~~~e~~~l~~L~~ 262 (325)
|.+|..+|++++|+.++++++.+.++.+++.... .+..++.++...|+ +.+|+.++++.... .....+...|+.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~--~~~~~~~~~la~ 344 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE-LFLFLQAVYKETVDERKIHDLLSYFEKKNLH--AYIEACARSAAA 344 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH-HHHHHHHHHSSSCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhCCCcHHHHHHHHHHHHhCCCh--hHHHHHHHHHHH
Confidence 9999999999999999999999988776654443 34778999999999 88888888875222 123346668899
Q ss_pred HH-hcCCHHHHHHHhcC
Q psy10061 263 AF-DEEDPEGARQALND 278 (325)
Q Consensus 263 a~-~~gd~~~~~~~~~~ 278 (325)
.+ ..|+.+.+....++
T Consensus 345 ~y~~~g~~~~A~~~~~~ 361 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRK 361 (378)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 88 59999999998876
No 11
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.90 E-value=5e-21 Score=176.98 Aligned_cols=245 Identities=13% Similarity=0.081 Sum_probs=219.7
Q ss_pred ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061 27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA 106 (325)
Q Consensus 27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~ 106 (325)
..+++++|+.+|+++.+.. .++....+.++..+|.+|...|++++|..+|.+++.+.+..++....+.++..+
T Consensus 60 ~~g~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 60 NAGDCRAGVAFFQAAIQAG-------TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHC-------CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhc-------ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 3468999999999998874 246666778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C-----------------HHHHHHHHHHHHHH
Q psy10061 107 IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL-K-----------------SDAALTLYSRAADV 168 (325)
Q Consensus 107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~-~-----------------~~~A~~~y~~Al~~ 168 (325)
|.+|...|++++|+.++++++.+....++....+.++.++|.+|... + +++|+.+|++++++
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998765 5 89999999999999
Q ss_pred HhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh---
Q psy10061 169 AHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW--- 245 (325)
Q Consensus 169 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~--- 245 (325)
....++......++..+|.+|..+|++++|+.+|++++.+.+..++......++..+|.+|...|++++|..+|+++
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99888888888899999999999999999999999999999988877777789999999999999999999999997
Q ss_pred -ccc-CCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 246 -GNC-CEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 246 -~~~-~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
+.. .......++..++.++ ..|+.+.+...+++
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 222 1223456778889987 69999999988876
No 12
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.90 E-value=2.5e-21 Score=178.34 Aligned_cols=210 Identities=12% Similarity=0.093 Sum_probs=184.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHH
Q psy10061 65 KAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGN-REAASTVL 143 (325)
Q Consensus 65 ~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~-~~~aa~~l 143 (325)
..|.++...|++++|..+|.+++.+....++....+.++.++|.+|..+|++++|+.++++|++++...++ ....+.++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999998 78889999
Q ss_pred HHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHH
Q psy10061 144 EKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLA 222 (325)
Q Consensus 144 ~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 222 (325)
.++|.+|...+ +++|+.+|++|+++.+..++....+.++.++|.+|..+|++++|+.+|++++.+.+..++......++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 99999999988 99999999999999999998888889999999999999999999999999999999887734446789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhh----cccCCChHHHHHHHHHHHH-hcCCHHHHHH
Q psy10061 223 VALVLVQLARGDTVAAEKAFKEW----GNCCEAPEVQTLEKLLQAF-DEEDPEGARQ 274 (325)
Q Consensus 223 ~~lg~~~~~~gd~~~A~~~~~~~----~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~ 274 (325)
.++|.+|...|++++|..+++++ +...+..-...+..|+..+ ..|+.+.+..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 324 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQG 324 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 99999999999999999999997 2222222222355677877 5787433333
No 13
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.90 E-value=1.2e-20 Score=167.83 Aligned_cols=245 Identities=15% Similarity=0.072 Sum_probs=219.3
Q ss_pred ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061 27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA 106 (325)
Q Consensus 27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~ 106 (325)
..+++++|+.+|+++.+.. ..+....+.++..+|.+|...|++++|..++.+++.+....++....+.++..+
T Consensus 17 ~~g~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 17 KSGDCRAGVSFFEAAVQVG-------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHC-------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 3468999999999999864 245666788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C--------------------HHHHHHHHHHH
Q psy10061 107 IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL-K--------------------SDAALTLYSRA 165 (325)
Q Consensus 107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~-~--------------------~~~A~~~y~~A 165 (325)
|.+|...|++++|+.++++++.+....++....+.++..+|.++... + +++|+.+++++
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998765 4 79999999999
Q ss_pred HHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 166 ADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
+.+.+..++......++..+|.++...|++++|+.++++++.+.+..++......++..+|.++...|++++|..+++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998888888888899999999999999999999999999999988877777889999999999999999999999997
Q ss_pred ----cccC-CChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 246 ----GNCC-EAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 246 ----~~~~-~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
+... ......++..++.++ ..|+.+.+...+++
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 288 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 2222 223456777888887 69999999998876
No 14
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.89 E-value=1.4e-20 Score=173.09 Aligned_cols=213 Identities=13% Similarity=0.009 Sum_probs=185.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-HHHHH
Q psy10061 62 DYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGN-REAAS 140 (325)
Q Consensus 62 ~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~-~~~aa 140 (325)
.|...|..+...|++++|+.+|.+++.+....++....+.++.++|.+|...|++++|+.++++|++++...++ ....+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 45567888999999999999999999999999999999999999999999999999999999999999999887 66889
Q ss_pred HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHH
Q psy10061 141 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIG 219 (325)
Q Consensus 141 ~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 219 (325)
.++.++|.+|...+ +++|+.+|++|+++.+..++....+.++.++|.+|..+|++++|+.+|++++.+++..+++.. .
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~ 261 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-P 261 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-H
Confidence 99999999999988 999999999999999999888888899999999999999999999999999999998877666 6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh----cccCCChHHHHHHHHHHHH-hcCCHHHHHHH
Q psy10061 220 RLAVALVLVQLARGDTVAAEKAFKEW----GNCCEAPEVQTLEKLLQAF-DEEDPEGARQA 275 (325)
Q Consensus 220 ~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~ 275 (325)
.++.++|.++...|++++|..+++++ ....+..-...+..|...+ ..++.+....+
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~a 322 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL 322 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 78999999999999999999999997 2222222223445566666 47774333333
No 15
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.87 E-value=5.4e-20 Score=160.15 Aligned_cols=183 Identities=14% Similarity=0.134 Sum_probs=160.6
Q ss_pred cccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--CChHHHHHHH
Q psy10061 26 TSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN--KSAYHAAKHL 103 (325)
Q Consensus 26 ~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~ 103 (325)
...+++++|+.+|++|...+++.+ ..+.+.-+.++..+|.+|...|++++|..+|.+++.+..+. ++....+.++
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTS---GHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATL 88 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHH---CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 345789999999999999987632 24557778899999999999999999999999999999887 6778889999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC--CChhhH
Q psy10061 104 EQAIMMCKELNDLTDVENLAKQAATLFLEQG--NREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE--DNYKQA 178 (325)
Q Consensus 104 ~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g--~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~--~~~~~~ 178 (325)
.++|.+|...|++++|+.++++++.++.+.+ +....+.++.++|.++...+ +++|+.+|+++++++... .+....
T Consensus 89 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 168 (283)
T 3edt_B 89 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV 168 (283)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 9999999999999999999999999998873 34677889999999999888 999999999999997654 334556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 211 (325)
..++..+|.+|..+|++++|+.+|++++.+.+.
T Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999999999998665
No 16
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=4.2e-19 Score=156.98 Aligned_cols=184 Identities=16% Similarity=0.166 Sum_probs=162.6
Q ss_pred ccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--CChHHHHHH
Q psy10061 25 MTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN--KSAYHAAKH 102 (325)
Q Consensus 25 ~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~--~~~~~aa~~ 102 (325)
+...+++++|+.++.++.+...... .++......++..+|.+|...|++++|..+|.+++.+..+. ++....+.+
T Consensus 37 ~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 113 (311)
T 3nf1_A 37 YASQGRYEVAVPLCKQALEDLEKTS---GHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAAT 113 (311)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHH---CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence 3445689999999999999886521 23567778999999999999999999999999999999877 677788999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC--CChhh
Q psy10061 103 LEQAIMMCKELNDLTDVENLAKQAATLFLEQ--GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE--DNYKQ 177 (325)
Q Consensus 103 ~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~--g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~--~~~~~ 177 (325)
+.++|.+|...|++++|+.+++++++++... ++....+.++..+|.++...+ +++|+.+|+++++++... ++...
T Consensus 114 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 193 (311)
T 3nf1_A 114 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN 193 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999999887 777788899999999999887 999999999999998775 34556
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 178 AAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 178 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 211 (325)
...++..+|.+|..+|++++|+.+|++++.+.++
T Consensus 194 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 194 VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999998655
No 17
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.5e-18 Score=153.35 Aligned_cols=226 Identities=14% Similarity=0.139 Sum_probs=195.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 53 KPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNK--SAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLF 130 (325)
Q Consensus 53 ~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~--~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~ 130 (325)
.++.+.-+..+..+|.+|...|++++|..+|.+++.+....+ +....+.++..+|.+|...|++++|+.++++++.++
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 567778889999999999999999999999999999998775 667788999999999999999999999999999999
Q ss_pred HHc--CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061 131 LEQ--GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE--DNYKQAAEYISRAARMCVRVKEFDKAADLIRQE 205 (325)
Q Consensus 131 ~~~--g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 205 (325)
... ++....+.++..+|.++...+ +++|+.+|++++++.... ++......++..+|.++...|++++|+.+|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 887 777788899999999999887 999999999999998765 555666789999999999999999999999999
Q ss_pred HHHHHHc--ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-ccc----------------------------------
Q psy10061 206 IGYHQES--EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNC---------------------------------- 248 (325)
Q Consensus 206 l~~~~~~--~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~---------------------------------- 248 (325)
+.++... ++......++..+|.++...|++++|..+|+++ ...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence 9998776 233445568899999999999999999999996 110
Q ss_pred -------------CCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 249 -------------CEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 249 -------------~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
.......++..|+.++ ..|+.+.+...+++
T Consensus 260 ~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 303 (311)
T 3nf1_A 260 FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA 303 (311)
T ss_dssp SCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1234456777888887 69999999888776
No 18
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.83 E-value=2.6e-18 Score=142.92 Aligned_cols=191 Identities=12% Similarity=0.011 Sum_probs=168.0
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI 107 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~ 107 (325)
.|++++|.++++... ++....+..+..+|.+|...|++++|..+|.+++.+.+..++....+.++.++|
T Consensus 5 ~g~~~~A~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 73 (203)
T 3gw4_A 5 AHDYALAERQAQALL-----------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVG 73 (203)
T ss_dssp --CHHHHHHHHHHHH-----------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhc-----------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 467888888443321 222345788899999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy10061 108 MMCKELNDLTDVENLAKQAATLFLEQG-NREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA 185 (325)
Q Consensus 108 ~~y~~~g~~~eA~~~~~~A~~~~~~~g-~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l 185 (325)
.+|...|++++|+.++++++.++...+ +....+.++.++|.++...+ +++|+.++++++++.+..++......++..+
T Consensus 74 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 153 (203)
T 3gw4_A 74 MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGL 153 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 999999999999999999999999999 56688899999999999887 9999999999999999988888888889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q psy10061 186 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQ 229 (325)
Q Consensus 186 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~ 229 (325)
|.++..+|++++|+.++++++.+.++.+++...+.++..++.+.
T Consensus 154 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 197 (203)
T 3gw4_A 154 GDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLE 197 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcccchh
Confidence 99999999999999999999999999998888877777666553
No 19
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.82 E-value=3.8e-17 Score=149.37 Aligned_cols=248 Identities=13% Similarity=-0.005 Sum_probs=196.7
Q ss_pred cccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q psy10061 24 TMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHL 103 (325)
Q Consensus 24 ~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~ 103 (325)
.....+++++|..++.+|...... .+...-+.++..+|.++...|++++|...+.+++.+....++....+.++
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPP------GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCT------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCC------CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 334457999999999999887643 34444567788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHH
Q psy10061 104 EQAIMMCKELNDLTDVENLAKQAATLFLEQGNR--EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAE 180 (325)
Q Consensus 104 ~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~--~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~ 180 (325)
.++|.+|...|++++|+.++++++.+....++. ...+.++.++|.++...+ +++|..++++++++.+..++.. ...
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~ 175 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQ 175 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-GHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-HHH
Confidence 999999999999999999999999999998875 567788899999998887 9999999999999998876654 446
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCC--ChHHHH
Q psy10061 181 YISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL-LAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCE--APEVQT 256 (325)
Q Consensus 181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~--~~e~~~ 256 (325)
++..+|.++...|++++|+.++++++.+.+..+.+ ..........+.++...|++++|...++++ ..... ......
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 88899999999999999999999999887665432 222222224455677888888888888886 21111 111223
Q ss_pred HHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 257 LEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 257 l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
+..+++++ ..|+.+.+...+++
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~ 278 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEE 278 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44566665 47777777766655
No 20
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.80 E-value=8.7e-18 Score=149.22 Aligned_cols=183 Identities=14% Similarity=0.051 Sum_probs=157.8
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI 107 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~ 107 (325)
.++|++|++++.++.+.... .++.......|..+|.++...+++++|+.+|.+++.+....++....+.++.++|
T Consensus 88 ~~~y~~a~~~~~~~l~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg 162 (293)
T 3u3w_A 88 QKRYKEIYNKVWNELKKEEY-----HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIA 162 (293)
T ss_dssp TTCHHHHHHHHHHHHTTCCC-----CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHhccccC-----ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 35788888888888775432 2333444667777899998899999999999999998777777778888999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy10061 108 MMCKELNDLTDVENLAKQAATLFLEQ-GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA 185 (325)
Q Consensus 108 ~~y~~~g~~~eA~~~~~~A~~~~~~~-g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l 185 (325)
.+|..+|++++|+.+|+++++++... ++....+.++.++|.+|...+ +++|+.++++++++....++....+.++.++
T Consensus 163 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 242 (293)
T 3u3w_A 163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQR 242 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 99999999999999999999999888 788888899999999999887 9999999999999999888877778899999
Q ss_pred HHHHHHcC-CHHHHHHHHHHHHHHHHHcccH
Q psy10061 186 ARMCVRVK-EFDKAADLIRQEIGYHQESEHL 215 (325)
Q Consensus 186 g~~~~~~g-~~~~A~~~~~~al~~~~~~~~~ 215 (325)
|.+|..+| .+++|+.+|++++.+++..++.
T Consensus 243 g~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~ 273 (293)
T 3u3w_A 243 GECLRKLEYEEAEIEDAYKKASFFFDILEMH 273 (293)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 99999999 5799999999999999887754
No 21
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.79 E-value=4.9e-17 Score=129.17 Aligned_cols=160 Identities=7% Similarity=-0.020 Sum_probs=129.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 54 PDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ 133 (325)
Q Consensus 54 ~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~ 133 (325)
+|....+..+..+|.+|...|++++|..++.+++.+....++....+.++.++|.+|...|++++|+.++++++.+....
T Consensus 3 ~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 45666777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 134 GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES 212 (325)
Q Consensus 134 g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 212 (325)
++....+.++.++|.++...+ +++|+.++++++++.+..++......++..+|.++...|++++|+.++++++.+.++.
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 162 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 162 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence 888777888888888887776 8888888888888887777777777788888888888888888888888888776554
Q ss_pred c
Q psy10061 213 E 213 (325)
Q Consensus 213 ~ 213 (325)
+
T Consensus 163 ~ 163 (164)
T 3ro3_A 163 G 163 (164)
T ss_dssp -
T ss_pred C
Confidence 3
No 22
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.79 E-value=3.9e-17 Score=135.77 Aligned_cols=168 Identities=10% Similarity=0.034 Sum_probs=148.4
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q psy10061 72 GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLE 151 (325)
Q Consensus 72 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~ 151 (325)
..|++++|...+... .+++...+.++..+|.+|...|++++|+.++++++.++...++....+.++.++|.++.
T Consensus 4 ~~g~~~~A~~~~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 77 (203)
T 3gw4_A 4 EAHDYALAERQAQAL------LAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER 77 (203)
T ss_dssp ---CHHHHHHHHHHH------HTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHh------cCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 456777777743322 23455668899999999999999999999999999999999999999999999999999
Q ss_pred ccC-HHHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q psy10061 152 ELK-SDAALTLYSRAADVAHGED-NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQ 229 (325)
Q Consensus 152 ~~~-~~~A~~~y~~Al~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~ 229 (325)
..+ +++|+.++++++++++..+ +......++.++|.++..+|++++|+.++++++.+.+..+++.....++.++|.++
T Consensus 78 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 157 (203)
T 3gw4_A 78 MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA 157 (203)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 887 9999999999999999888 45577789999999999999999999999999999998888888888899999999
Q ss_pred HhcCCHHHHHHHHHhh
Q psy10061 230 LARGDTVAAEKAFKEW 245 (325)
Q Consensus 230 ~~~gd~~~A~~~~~~~ 245 (325)
...|++++|..+++++
T Consensus 158 ~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 158 QQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHH
Confidence 9999999999999997
No 23
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.78 E-value=3.7e-17 Score=145.11 Aligned_cols=186 Identities=13% Similarity=0.031 Sum_probs=144.9
Q ss_pred ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061 27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA 106 (325)
Q Consensus 27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~ 106 (325)
..++|++|++++.++.+.... .++...-...+...|.++...|++++|..+|.+++.+..+..+....+.++.++
T Consensus 87 ~~~~y~~A~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 2qfc_A 87 KQKRYKEIYNKVWNELKKEEY-----HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HTTCHHHHHHHHHHHHHTCCC-----CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhccccC-----ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 345788888888888776543 123344455666678888888888899888888888777766777778888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHH
Q psy10061 107 IMMCKELNDLTDVENLAKQAATLFLEQGNRE-AASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISR 184 (325)
Q Consensus 107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~-~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~ 184 (325)
|.+|..+|++++|+.+|++|++++...++.. ..+.++.++|.+|...+ +++|+.+|++++++....++....+.++.+
T Consensus 162 g~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~ 241 (293)
T 2qfc_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9998888899999999999888888775533 33478888888888877 889999998888888776666666778888
Q ss_pred HHHHHHHcCCHHHH-HHHHHHHHHHHHHcccHHH
Q psy10061 185 AARMCVRVKEFDKA-ADLIRQEIGYHQESEHLLA 217 (325)
Q Consensus 185 lg~~~~~~g~~~~A-~~~~~~al~~~~~~~~~~~ 217 (325)
+|.+|..+|++++| ..+|++++.+++..++...
T Consensus 242 lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~ 275 (293)
T 2qfc_A 242 RGECLRKLEYEEAEIEDAYKKASFFFDILEMHAY 275 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhh
Confidence 88888888888888 7778888888887776443
No 24
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.78 E-value=3.8e-17 Score=141.95 Aligned_cols=208 Identities=15% Similarity=0.110 Sum_probs=172.1
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q psy10061 71 KGAKSFQQCKEYLLKAANCYETNK--SAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ--GNREAASTVLEKG 146 (325)
Q Consensus 71 ~~~g~~~~A~~~~~~a~~~~~~~~--~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~--g~~~~aa~~l~~l 146 (325)
...|++++|..+|.++++++.+.. +....+.++..+|.+|...|++++|+.++++++.+..+. ++....+.++.++
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 356777888888888888877653 456778899999999999999999999999999999887 7778889999999
Q ss_pred HHHHhccC-HHHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc--cHHHHHHH
Q psy10061 147 AKSLEELK-SDAALTLYSRAADVAHGE--DNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE--HLLAIGRL 221 (325)
Q Consensus 147 g~~~~~~~-~~~A~~~y~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~ 221 (325)
|.+|...+ +++|+.+|++++.+++.. .+......++.++|.+|..+|++++|+.+|++++.++.... +......+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999887 999999999999998765 23355678999999999999999999999999999977652 23445578
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhh-cc-----c------------------------------------------CCChH
Q psy10061 222 AVALVLVQLARGDTVAAEKAFKEW-GN-----C------------------------------------------CEAPE 253 (325)
Q Consensus 222 ~~~lg~~~~~~gd~~~A~~~~~~~-~~-----~------------------------------------------~~~~e 253 (325)
+.++|.++...|++++|..+|+++ .. + .....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 899999999999999999999986 11 0 12334
Q ss_pred HHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 254 VQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 254 ~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
..++..|+.++ ..|+.+.+...+++
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~ 277 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDC 277 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45677888887 58999988887765
No 25
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=7.1e-17 Score=150.21 Aligned_cols=234 Identities=8% Similarity=-0.030 Sum_probs=202.2
Q ss_pred hhhhhHHHHHHhhchhccccccccHHHHHHHHHHHHhhhcccc--cCC----CCCHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy10061 7 KEEGMEYVKSAEKHSLSTMTSDRKKEEGMEYVKSAEKHLKTSL--LKW----KPDYDSAADDYSKAATCFKGAKSFQQCK 80 (325)
Q Consensus 7 ~~~~~~~~~~ae~~~~~~~~~~~~~~eA~~l~~~A~~~~~~~~--~~~----~~~~~~A~~~y~~a~~~y~~~g~~~~A~ 80 (325)
+|.|...+.+|++..+ .++|++|++.|.++.+.....- ... ......-..++.++|.+|...|++++|.
T Consensus 1 ~s~p~~~l~~a~~l~~-----~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~ 75 (434)
T 4b4t_Q 1 MSLPGSKLEEARRLVN-----EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLR 75 (434)
T ss_dssp CCSTTHHHHHHHHHHH-----HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCChHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHH
Confidence 3566677788877443 3589999999999998776421 000 1122334466788999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHH
Q psy10061 81 EYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAAL 159 (325)
Q Consensus 81 ~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~ 159 (325)
+++.++..+....++......+...++.++...|++++|+.++++++.+....++....+.++.++|.+|...+ +++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 155 (434)
T 4b4t_Q 76 EFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSL 155 (434)
T ss_dssp HHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHH
Confidence 99999999999998888888889999999999999999999999999999999988888999999999999988 99999
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHhcCCHHHH
Q psy10061 160 TLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH-LLAIGRLAVALVLVQLARGDTVAA 238 (325)
Q Consensus 160 ~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~~~~~gd~~~A 238 (325)
.++++++......++.....+++..+|.+|..+|+|++|..++++++.+...+.. +...+.++..+|.++...|++.+|
T Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A 235 (434)
T 4b4t_Q 156 ALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTA 235 (434)
T ss_dssp HHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHH
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999988888888899999999999999999999999999999888764 456778889999999999999999
Q ss_pred HHHHHhh
Q psy10061 239 EKAFKEW 245 (325)
Q Consensus 239 ~~~~~~~ 245 (325)
..+|.++
T Consensus 236 ~~~~~~a 242 (434)
T 4b4t_Q 236 FSYFFES 242 (434)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 26
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.77 E-value=2.3e-17 Score=146.54 Aligned_cols=186 Identities=9% Similarity=-0.019 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Q psy10061 60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAA 139 (325)
Q Consensus 60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~a 139 (325)
...+...+..+...|++++|.+.+.+++.......+.......+..+|.+|...|++++|+.++++++.+.....+....
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 44555667888899999999999999988765544445566777889999999999999999999999988777777778
Q ss_pred HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHH
Q psy10061 140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQ-AAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLA 217 (325)
Q Consensus 140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 217 (325)
+.++.++|.+|...+ +++|+.+|++|+++++...+... ...++.++|.+|..+|+|++|+.++++++.+....++...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 899999999999887 99999999999999887754333 3379999999999999999999999999999877666556
Q ss_pred HHHHHHHHHHHHHhcCCHHHH-HHHHHhh
Q psy10061 218 IGRLAVALVLVQLARGDTVAA-EKAFKEW 245 (325)
Q Consensus 218 ~~~~~~~lg~~~~~~gd~~~A-~~~~~~~ 245 (325)
.+.+++++|.+|...|++++| ..+|+++
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 677899999999999999999 8889986
No 27
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.77 E-value=2e-17 Score=146.84 Aligned_cols=188 Identities=10% Similarity=-0.012 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH
Q psy10061 58 SAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNRE 137 (325)
Q Consensus 58 ~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~ 137 (325)
.-...+.+.+..+...|++++|...+.++........+.......+..+|.+|...+++++|+.++++|+.+....++..
T Consensus 73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 152 (293)
T 3u3w_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH
Confidence 34455556677788999999999999998875433333333466777899999999999999999999999877788888
Q ss_pred HHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH
Q psy10061 138 AASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE-DNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL 215 (325)
Q Consensus 138 ~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 215 (325)
..+.++.++|.+|...+ +++|+.+|++++++++.. ++......++.++|.+|..+|+|++|+.++++++.+.++.++.
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~ 232 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence 88889999999999887 999999999999999887 6667778899999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHhcC-CHHHHHHHHHhh
Q psy10061 216 LAIGRLAVALVLVQLARG-DTVAAEKAFKEW 245 (325)
Q Consensus 216 ~~~~~~~~~lg~~~~~~g-d~~~A~~~~~~~ 245 (325)
...+.++.++|.+|..+| ++++|.++|+++
T Consensus 233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 777889999999999999 579999999997
No 28
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.77 E-value=1.4e-16 Score=126.40 Aligned_cols=153 Identities=15% Similarity=0.084 Sum_probs=143.9
Q ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc
Q psy10061 93 NKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHG 171 (325)
Q Consensus 93 ~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~ 171 (325)
.+++...+.++..+|.+|...|++++|+.++++++++....++....+.++..+|.++...+ +++|+.++++++++...
T Consensus 2 ~~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 2 PGSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999887 99999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 172 EDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 172 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.++......++..+|.++...|++++|+.++++++.+.++.++......++..+|.++...|++++|..+++++
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 82 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88888888899999999999999999999999999999988887778889999999999999999999999987
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=1.6e-16 Score=144.53 Aligned_cols=222 Identities=12% Similarity=-0.010 Sum_probs=126.5
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI 107 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~ 107 (325)
.+++++|+++|+++.+.... . ...+..+|.+|...|++++|..+|.+++.+.... ..++.++|
T Consensus 78 ~g~~~~A~~~~~~al~~~p~--------~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~ 140 (365)
T 4eqf_A 78 EGDLPVTILFMEAAILQDPG--------D---AEAWQFLGITQAENENEQAAIVALQRCLELQPNN------LKALMALA 140 (365)
T ss_dssp HTCHHHHHHHHHHHHHHCTT--------C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcC--------C---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHHH
Confidence 36788888888888775422 1 4557777888888888888888888888764322 45788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHH----HHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHH
Q psy10061 108 MMCKELNDLTDVENLAKQAATLFLEQGNRE----AASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYI 182 (325)
Q Consensus 108 ~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~----~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~ 182 (325)
.+|...|++++|+.++++++.+........ +.+..+..+|.++...+ +++|+.+|++++.+.+...+ ..++
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~ 216 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID----PDLQ 216 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC----HHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC----HHHH
Confidence 888888888888888888887654432211 12334444555555555 66666666666655433211 2345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHH
Q psy10061 183 SRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLL 261 (325)
Q Consensus 183 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~ 261 (325)
..+|.+|..+|++++|+.+|++++.+.+.. ..++.++|.++...|++++|+..|+++ ...... ..+...|+
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~ 288 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVRPED------YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF--IRSRYNLG 288 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--hHHHHHHH
Confidence 556666666666666666666655542211 124455566666666666666666554 211111 33444555
Q ss_pred HHH-hcCCHHHHHHHhcC
Q psy10061 262 QAF-DEEDPEGARQALND 278 (325)
Q Consensus 262 ~a~-~~gd~~~~~~~~~~ 278 (325)
.++ ..|+.+.+...+++
T Consensus 289 ~~~~~~g~~~~A~~~~~~ 306 (365)
T 4eqf_A 289 ISCINLGAYREAVSNFLT 306 (365)
T ss_dssp HHHHHHTCCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHH
Confidence 554 35555555555544
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.7e-15 Score=129.94 Aligned_cols=212 Identities=14% Similarity=0.029 Sum_probs=140.7
Q ss_pred ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHH
Q psy10061 27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNK-SAYHAAKHLEQ 105 (325)
Q Consensus 27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~-~~~~aa~~~~~ 105 (325)
..+++++|+++|.++.+.. . . ...+...|.+|...|++++|..++.+++.+..... +....+.++..
T Consensus 17 ~~~~~~~A~~~~~~a~~~~-~-----~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 17 KARQFDEAIEHYNKAWELH-K-----D------ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHS-C-----C------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhh-c-----c------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 3468999999999998876 3 1 35788999999999999999999999999998764 56666889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHH
Q psy10061 106 AIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISR 184 (325)
Q Consensus 106 ~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~ 184 (325)
+|.+|...|++++|+.++++++.+... +.++...+ +++|+..+++++... .....++..
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~ 144 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT--------------ADILTKLRNAEKELKKAEAEAYVN------PEKAEEARL 144 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHHHHHHHHHCC------HHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch--------------hHHHHHHhHHHHHHHHHHHHHHcC------cchHHHHHH
Confidence 999999999999999999999885321 12233333 555566555555432 122345556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHH
Q psy10061 185 AARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQA 263 (325)
Q Consensus 185 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a 263 (325)
+|.++...|++++|+.+|++++.+.+.. ..++..+|.++...|++++|...|+++ ..... ...+...++.+
T Consensus 145 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~l~~~ 216 (258)
T 3uq3_A 145 EGKEYFTKSDWPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--FVRAYIRKATA 216 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH--HHHHHHHHHHH
Confidence 6666666666666666666665543221 134455666666666666666666665 22111 13344455555
Q ss_pred H-hcCCHHHHHHHhcC
Q psy10061 264 F-DEEDPEGARQALND 278 (325)
Q Consensus 264 ~-~~gd~~~~~~~~~~ 278 (325)
+ ..|+.+.+...+++
T Consensus 217 ~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 217 QIAVKEYASALETLDA 232 (258)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHH
Confidence 4 46666666665555
No 31
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=3.7e-15 Score=127.80 Aligned_cols=192 Identities=16% Similarity=0.072 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-CH
Q psy10061 58 SAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQG-NR 136 (325)
Q Consensus 58 ~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g-~~ 136 (325)
..++.+...|.++...|++++|..+|.+++... .+ ..++..+|.+|...|++++|+.++++++.+....+ +.
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 75 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KD----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY 75 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---cc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch
Confidence 456788899999999999999999999999887 23 45899999999999999999999999999988874 66
Q ss_pred HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH
Q psy10061 137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL 215 (325)
Q Consensus 137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 215 (325)
...+.++..+|.++...+ +++|+.+|++++.+... +.++...|++++|+..+++++...+
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------~~~~~~~~~~~~a~~~~~~~~~~~~----- 136 (258)
T 3uq3_A 76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------------ADILTKLRNAEKELKKAEAEAYVNP----- 136 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHHHHHHHHHCCH-----
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------------hHHHHHHhHHHHHHHHHHHHHHcCc-----
Confidence 667889999999999887 99999999999987543 4567788899999999999887532
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 216 LAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 216 ~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
....++..+|.++...|++++|...|+++ ...... ..+...++.++ ..|+.+.+...+++
T Consensus 137 -~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 137 -EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED--ARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 23457789999999999999999999998 333222 45677888887 69999999998876
No 32
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.72 E-value=3.8e-15 Score=136.01 Aligned_cols=220 Identities=13% Similarity=-0.025 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Q psy10061 57 DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNR 136 (325)
Q Consensus 57 ~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~ 136 (325)
....+.....+.++...|++++|...+.+++.... .++....+.++..+|.+|...|++++|..++++++.+....|+.
T Consensus 11 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 11 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence 33456677778889999999999999999988764 34556677889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCCh--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q psy10061 137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY--KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE 213 (325)
Q Consensus 137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 213 (325)
...+.++..+|.++...+ +++|+.+|++++.+.+..+.. .....++..+|.++...|++++|..++++++.+.+..+
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 169 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 169 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC
Confidence 999999999999999887 999999999999999887654 45567888999999999999999999999999988766
Q ss_pred cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cc---cCCChHHHHHH--HHHHHH-hcCCHHHHHHHhcC
Q psy10061 214 HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GN---CCEAPEVQTLE--KLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 214 ~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~---~~~~~e~~~l~--~L~~a~-~~gd~~~~~~~~~~ 278 (325)
... ...++..+|.++...|++++|..+++++ .. ........... .++..+ ..|+.+.+...+.+
T Consensus 170 ~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 240 (373)
T 1hz4_A 170 PQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRH 240 (373)
T ss_dssp GGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 544 3467789999999999999999999997 22 21111222221 233334 68999999888765
No 33
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.71 E-value=1e-15 Score=136.14 Aligned_cols=230 Identities=10% Similarity=-0.082 Sum_probs=177.4
Q ss_pred ccHHHHHHHHHHHHhhhcccc---------cCCCCCHHHHHHHHHHH--------------HHHHHhcC-CHHHHHHHHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSL---------LKWKPDYDSAADDYSKA--------------ATCFKGAK-SFQQCKEYLL 84 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~---------~~~~~~~~~A~~~y~~a--------------~~~y~~~g-~~~~A~~~~~ 84 (325)
+++++|++++.++.+...... ....+++++|...|.++ |.++...| ++++|..+|.
T Consensus 36 g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 115 (330)
T 3hym_B 36 CDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLS 115 (330)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 577777777777765543211 00136666666666554 67788889 9999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHH
Q psy10061 85 KAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYS 163 (325)
Q Consensus 85 ~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~ 163 (325)
+++.+.... ..++..+|.+|...|++++|+.++++++.+..... ..+..+|.++...+ +++|+.+|+
T Consensus 116 ~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~ 183 (330)
T 3hym_B 116 KATTLEKTY------GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH------LPMLYIGLEYGLTNNSKLAERFFS 183 (330)
T ss_dssp HHHTTCTTC------THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhCCcc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH------HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 988765432 34688999999999999999999999988754422 24667999999887 999999999
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH---HHHHHHHHHHHHHHHhcCCHHHHHH
Q psy10061 164 RAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL---LAIGRLAVALVLVQLARGDTVAAEK 240 (325)
Q Consensus 164 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~lg~~~~~~gd~~~A~~ 240 (325)
+++.+.+.. ..++..+|.++...|++++|+.++++++.+.+..+.. .....++..+|.++...|++++|..
T Consensus 184 ~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 184 QALSIAPED------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHTTCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhCCCC------hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 998875432 4678899999999999999999999999987665432 1223577899999999999999999
Q ss_pred HHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 241 AFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 241 ~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
+|+++ ..... ...++..++.++ ..|+.+.+...+++
T Consensus 258 ~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (330)
T 3hym_B 258 YHRQALVLIPQ--NASTYSAIGYIHSLMGNFENAVDYFHT 295 (330)
T ss_dssp HHHHHHHHSTT--CSHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhhCcc--chHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99998 32222 245677888887 69999999999988
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=1.4e-15 Score=129.13 Aligned_cols=191 Identities=13% Similarity=0.030 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10061 61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAAS 140 (325)
Q Consensus 61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa 140 (325)
+.+...|.++...|++++|+..|.+++.+.... ..++.++|.++...|++++|+.++++++.+... -.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~------~~ 73 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQD------PEALYWLARTQLKLGLVNPALENGKTLVARTPR------YL 73 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cH
Confidence 467788999999999999999999988654432 568899999999999999999999999977321 23
Q ss_pred HHHHHHHHHHhcc-----------C-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 141 TVLEKGAKSLEEL-----------K-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 208 (325)
Q Consensus 141 ~~l~~lg~~~~~~-----------~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 208 (325)
.++.++|.++... + +++|+.+|++++++.+.. ..++..+|.++..+|++++|+..|++++++
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY------APLHLQRGLVYALLGERDKAEASLKQALAL 147 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 4688999999888 7 999999999999986542 368889999999999999999999999987
Q ss_pred HHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 209 HQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 209 ~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
. .+ ..++.++|.++...|++++|+..|+++ ....+. ..+...++.++ ..|+.+.+...+++
T Consensus 148 ~---~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~--~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 148 E---DT----PEIRSALAELYLSMGRLDEALAQYAKALEQAPKD--LDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp C---CC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHTC-------------
T ss_pred c---cc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5 22 246688999999999999999999998 332222 35677888887 59999998888776
No 35
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.70 E-value=2.8e-15 Score=137.57 Aligned_cols=194 Identities=18% Similarity=0.130 Sum_probs=101.0
Q ss_pred cccHHHHHHHHHHHHhhhcccc---------cCCCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSL---------LKWKPDYDSAADDYSKA--------------ATCFKGAKSFQQCKEYLL 84 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~---------~~~~~~~~~A~~~y~~a--------------~~~y~~~g~~~~A~~~~~ 84 (325)
.+++++|+++|+++.+...... ....+++++|.+.|.++ |.++...|++++|..+|.
T Consensus 80 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3577777777777766543210 00135566666655543 445666677777777776
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHH
Q psy10061 85 KAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYS 163 (325)
Q Consensus 85 ~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~ 163 (325)
+++..... .+.++.++|.+|...|++++|+.+|++++.+... ....+.++|.++...+ +++|+..|+
T Consensus 160 ~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~ 227 (388)
T 1w3b_A 160 KAIETQPN------FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN------FLDAYINLGNVLKEARIFDRAVAAYL 227 (388)
T ss_dssp HHHHHCTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66654321 1346677777777777777777777777654111 1223444455554444 555555555
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10061 164 RAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFK 243 (325)
Q Consensus 164 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~ 243 (325)
+++.+.+.. ..++..+|.+|...|++++|+.+|++++.+.+. ...++.++|.++...|++++|...|+
T Consensus 228 ~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 295 (388)
T 1w3b_A 228 RALSLSPNH------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH------FPDAYCNLANALKEKGSVAEAEDCYN 295 (388)
T ss_dssp HHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS------CHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHhhCcCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555443211 234444555555555555555555554443111 01133444444444555555555544
Q ss_pred hh
Q psy10061 244 EW 245 (325)
Q Consensus 244 ~~ 245 (325)
++
T Consensus 296 ~a 297 (388)
T 1w3b_A 296 TA 297 (388)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=3.8e-16 Score=132.63 Aligned_cols=184 Identities=14% Similarity=0.013 Sum_probs=141.5
Q ss_pred cccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy10061 26 TSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQ 105 (325)
Q Consensus 26 ~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~ 105 (325)
...+++++|+.+|+++.+.. ++. .+.+..+|.++...|++++|+.+|.+++.+.... ..++.+
T Consensus 16 ~~~g~~~~A~~~~~~al~~~--------p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~ 78 (217)
T 2pl2_A 16 YALGRYDAALTLFERALKEN--------PQD---PEALYWLARTQLKLGLVNPALENGKTLVARTPRY------LGGYMV 78 (217)
T ss_dssp HHTTCHHHHHHHHHHHHTTS--------SSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHH
Confidence 33568999999999998754 333 3567889999999999999999999999876432 457899
Q ss_pred HHHHHHHc-----------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCC
Q psy10061 106 AIMMCKEL-----------NDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGED 173 (325)
Q Consensus 106 ~~~~y~~~-----------g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~ 173 (325)
+|.+|..+ |++++|+..+++++++... -..++.++|.++...+ +++|+.+|++++++. +
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~ 149 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR------YAPLHLQRGLVYALLGERDKAEASLKQALALE---D 149 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---C
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---c
Confidence 99999999 9999999999999987321 2357889999999988 999999999999986 2
Q ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 174 NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 174 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
+ ..++.++|.+|..+|++++|+..|++++.+.+.. ..++.++|.++...|++++|...|++.
T Consensus 150 ~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 150 T----PEIRSALAELYLSMGRLDEALAQYAKALEQAPKD------LDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHTC--------------
T ss_pred c----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 2 3678899999999999999999999999874321 246788999999999999999999886
No 37
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.69 E-value=2.1e-15 Score=136.72 Aligned_cols=221 Identities=10% Similarity=-0.039 Sum_probs=145.5
Q ss_pred ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIM 108 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~ 108 (325)
+++++|+.+|.++.+... +. ...+..+|.+|...|++++|..+|.+++.+... ...++..+|.
T Consensus 78 g~~~~A~~~~~~al~~~p--------~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~l~~ 140 (368)
T 1fch_A 78 GDLPNAVLLFEAAVQQDP--------KH---MEAWQYLGTTQAENEQELLAISALRRCLELKPD------NQTALMALAV 140 (368)
T ss_dssp TCHHHHHHHHHHHHHSCT--------TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC--------CC---HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC------CHHHHHHHHH
Confidence 455555555555554321 11 234445678888899999999999988877533 1457888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHH-----------------------------cCCHHH----------------HHHHH
Q psy10061 109 MCKELNDLTDVENLAKQAATLFLE-----------------------------QGNREA----------------ASTVL 143 (325)
Q Consensus 109 ~y~~~g~~~eA~~~~~~A~~~~~~-----------------------------~g~~~~----------------aa~~l 143 (325)
+|...|++++|+.++++++.+... .|++.. .+.++
T Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 888888888888888877654221 111221 13456
Q ss_pred HHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHH
Q psy10061 144 EKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLA 222 (325)
Q Consensus 144 ~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 222 (325)
..+|.++...+ +++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|++++.+.+. ...++
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~ 288 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVRPND------YLLWNKLGATLANGNQSEEAVAAYRRALELQPG------YIRSR 288 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHH
Confidence 66777777666 888888888887764332 356777888888888888888888887775321 12456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhh----cccC-C-----ChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 223 VALVLVQLARGDTVAAEKAFKEW----GNCC-E-----APEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 223 ~~lg~~~~~~gd~~~A~~~~~~~----~~~~-~-----~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
..+|.++...|++++|..+|+++ +... . .....+...|+.++ ..|+.+.+....++
T Consensus 289 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 289 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 77888888888888888888876 2211 0 11145666777776 47888777777665
No 38
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.69 E-value=3e-15 Score=122.89 Aligned_cols=163 Identities=15% Similarity=0.046 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Q psy10061 59 AADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREA 138 (325)
Q Consensus 59 A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~ 138 (325)
-...|..+|.+|...|++++|+.+|.+++++.... ..++.++|.+|..+|++++|+..++++...... .
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~---~-- 72 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN------VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT---S-- 72 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---C--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch---h--
Confidence 45789999999999999999999999999876432 468999999999999999999999998765322 1
Q ss_pred HHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHH
Q psy10061 139 ASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLA 217 (325)
Q Consensus 139 aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 217 (325)
..++..+|.++...+ ++.|+..+.+++.+.... ..++..+|.+|..+|++++|+..|++++++.+.
T Consensus 73 -~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~------ 139 (184)
T 3vtx_A 73 -AEAYYILGSANFMIDEKQAAIDALQRAIALNTVY------ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG------ 139 (184)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch------
Confidence 346778888888776 999999999999876543 357889999999999999999999999987432
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 218 IGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 218 ~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
...++.++|.+|..+|++++|+++|+++
T Consensus 140 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a 167 (184)
T 3vtx_A 140 FIRAYQSIGLAYEGKGLRDEAVKYFKKA 167 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1347789999999999999999999997
No 39
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.69 E-value=3.5e-15 Score=132.70 Aligned_cols=250 Identities=13% Similarity=0.027 Sum_probs=181.1
Q ss_pred hhhhhhHHHHHHhhchh----cc------ccccccHHHHHHHHHHHHhhhcccc---------cCCCC-CHHHHHHHHHH
Q psy10061 6 KKEEGMEYVKSAEKHSL----ST------MTSDRKKEEGMEYVKSAEKHLKTSL---------LKWKP-DYDSAADDYSK 65 (325)
Q Consensus 6 ~~~~~~~~~~~ae~~~~----~~------~~~~~~~~eA~~l~~~A~~~~~~~~---------~~~~~-~~~~A~~~y~~ 65 (325)
...+|..++.++-+.-- .+ +...+++++|+.++.++.+...... ....+ ++++|...|.+
T Consensus 37 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 116 (330)
T 3hym_B 37 DFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSK 116 (330)
T ss_dssp CHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 35566666666543321 11 2233577888888877776543210 00134 77777777766
Q ss_pred H--------------HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 66 A--------------ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFL 131 (325)
Q Consensus 66 a--------------~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~ 131 (325)
+ |.++...|++++|..+|.+++.+.... ...+..+|.+|...|++++|+.++++++.+..
T Consensus 117 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 190 (330)
T 3hym_B 117 ATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC------HLPMLYIGLEYGLTNNSKLAERFFSQALSIAP 190 (330)
T ss_dssp HHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC------SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence 5 678899999999999999999887543 23567799999999999999999999987643
Q ss_pred HcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCCh---hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061 132 EQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY---KQAAEYISRAARMCVRVKEFDKAADLIRQEIG 207 (325)
Q Consensus 132 ~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 207 (325)
. -..++..+|.++...+ +++|+.++++++.+.+..++. .....++..+|.+|...|++++|+.+|++++.
T Consensus 191 ~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 264 (330)
T 3hym_B 191 E------DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV 264 (330)
T ss_dssp T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C------ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 2 1457889999999887 999999999999998765543 22246889999999999999999999999998
Q ss_pred HHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHH--hcCCHHHHHH
Q psy10061 208 YHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAF--DEEDPEGARQ 274 (325)
Q Consensus 208 ~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~--~~gd~~~~~~ 274 (325)
+.+. ...++..+|.++...|++++|..+|+++-...+ ....+...|+.++ ..|+.+.+..
T Consensus 265 ~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~g~~~a~~~ 326 (330)
T 3hym_B 265 LIPQ------NASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCIEMYIGDSEAYIG 326 (330)
T ss_dssp HSTT------CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHHHTTTTC------
T ss_pred hCcc------chHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHHHHHhCchhccCC
Confidence 7433 124678899999999999999999999833322 1234566777776 4777776543
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=1.4e-15 Score=132.20 Aligned_cols=185 Identities=9% Similarity=-0.011 Sum_probs=85.5
Q ss_pred ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIM 108 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~ 108 (325)
+++++|+++|.++.+..... ...+..+|.+|...|++++|+.+|.+++.. ..+....+.++..+|.
T Consensus 17 ~~~~~A~~~~~~~l~~~p~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 17 NNYAEAIEVFNKLEAKKYNS-----------PYIYNRRAVCYYELAKYDLAQKDIETYFSK---VNATKAKSADFEYYGK 82 (272)
T ss_dssp TCHHHHHHHHHHHHHTTCCC-----------STTHHHHHHHHHHTTCHHHHHHHHHHHHTT---SCTTTCCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---cCchhHHHHHHHHHHH
Confidence 45666666666655443220 013444455555555555555555555541 1233333444555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy10061 109 MCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAAR 187 (325)
Q Consensus 109 ~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~ 187 (325)
+|...|++++|+.++++++++.... ..++..+|.+|...+ +++|+.+|++++++... ...++..+|.
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~l~~ 150 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTR------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT------DPKVFYELGQ 150 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTC------THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC------CHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC------cHHHHHHHHH
Confidence 5555555555555555555432211 124445555555444 55555555555443111 1234444552
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHhh
Q psy10061 188 MCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD---TVAAEKAFKEW 245 (325)
Q Consensus 188 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd---~~~A~~~~~~~ 245 (325)
.....+++++|+.+|++++.+.+... .++..+|.++...|+ +++|...|+++
T Consensus 151 ~~~~~~~~~~A~~~~~~a~~~~p~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 151 AYYYNKEYVKADSSFVKVLELKPNIY------IGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCH------HHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccch------HHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 22223355555555555555433320 233344555555454 55555555553
No 41
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.68 E-value=9.7e-15 Score=133.91 Aligned_cols=247 Identities=15% Similarity=0.048 Sum_probs=188.2
Q ss_pred hhhhhhHHHHHHhhc----hh-----c-cccccccHHHHHHHHHHHHhhhcccc---------cCCCCCHHHHHHHHHHH
Q psy10061 6 KKEEGMEYVKSAEKH----SL-----S-TMTSDRKKEEGMEYVKSAEKHLKTSL---------LKWKPDYDSAADDYSKA 66 (325)
Q Consensus 6 ~~~~~~~~~~~ae~~----~~-----~-~~~~~~~~~eA~~l~~~A~~~~~~~~---------~~~~~~~~~A~~~y~~a 66 (325)
+..+|.+++.+|-+. .. + .+...+++++|++.|.++.+...... ..-.+++++|.+.|.++
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 356666666666432 21 1 23334678888888888876543211 11147777777776654
Q ss_pred --------------HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 67 --------------ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLE 132 (325)
Q Consensus 67 --------------~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~ 132 (325)
|.+|...|++++|...|.+++.+.... ..++.++|.++...|++++|+..+++++.+...
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 235 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF------LDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 678899999999999999998875432 467899999999999999999999999876321
Q ss_pred cCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 133 QGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 133 ~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 211 (325)
-..++.++|.++...+ +++|+.+|++++++.+.. ..++..+|.++...|++++|+.+|++++.+.+.
T Consensus 236 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 303 (388)
T 1w3b_A 236 ------HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF------PDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303 (388)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT
T ss_pred ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence 2457889999999887 999999999999864332 357889999999999999999999999987432
Q ss_pred cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 212 SEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 212 ~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
. ..++..+|.++...|++++|...|+++ ...... ..+...|+.++ ..|+.+.+...+++
T Consensus 304 ~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 304 H------ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF--AAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp C------HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC--HHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred c------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 246788999999999999999999998 433332 45677888887 69999999888876
No 42
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.67 E-value=1.9e-14 Score=129.09 Aligned_cols=257 Identities=13% Similarity=0.037 Sum_probs=167.7
Q ss_pred hhhhhhHHHHHHhhchhc----c------ccccccHHHHHHHHHHHHhhhcccc---------cCCCCCHHHHHHHHHHH
Q psy10061 6 KKEEGMEYVKSAEKHSLS----T------MTSDRKKEEGMEYVKSAEKHLKTSL---------LKWKPDYDSAADDYSKA 66 (325)
Q Consensus 6 ~~~~~~~~~~~ae~~~~~----~------~~~~~~~~eA~~l~~~A~~~~~~~~---------~~~~~~~~~A~~~y~~a 66 (325)
+..+|..++.++-+.-.. | +...+++++|++++.++.+...... ....+++++|...|.++
T Consensus 18 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 97 (359)
T 3ieg_A 18 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV 97 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 355666666666543221 1 1223677888888888776543210 00124555555554443
Q ss_pred -----------------------------HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH
Q psy10061 67 -----------------------------ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLT 117 (325)
Q Consensus 67 -----------------------------~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~ 117 (325)
+.++...|++++|..+|.+++...... ..++..+|.+|...|+++
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 171 (359)
T 3ieg_A 98 LKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD------AELRELRAECFIKEGEPR 171 (359)
T ss_dssp HTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHH
T ss_pred HhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHCCCHH
Confidence 455556666666666666665543321 245666677777777777
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhh------HHHHHHHHHHHHH
Q psy10061 118 DVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQ------AAEYISRAARMCV 190 (325)
Q Consensus 118 eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~------~~~~~~~lg~~~~ 190 (325)
+|+.++++++.+.. .+ ..++..+|.++...+ +++|+.+|++++++......... .......+|.++.
T Consensus 172 ~A~~~~~~~~~~~~--~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 245 (359)
T 3ieg_A 172 KAISDLKAASKLKS--DN----TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI 245 (359)
T ss_dssp HHHHHHHHHHTTCS--CC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777665421 11 246778888888777 99999999999987654422110 0112345688999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCC
Q psy10061 191 RVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEED 268 (325)
Q Consensus 191 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd 268 (325)
..|++++|+..|++++.+.+. +.......+..+|.++...|++++|...|+++ ..... ...+...++.++ ..|+
T Consensus 246 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~ 321 (359)
T 3ieg_A 246 RDGRYTDATSKYESVMKTEPS--VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD--NVNALKDRAEAYLIEEM 321 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCC
Confidence 999999999999999886543 33334456778999999999999999999998 33322 245777888887 6999
Q ss_pred HHHHHHHhcC
Q psy10061 269 PEGARQALND 278 (325)
Q Consensus 269 ~~~~~~~~~~ 278 (325)
.+.+...+++
T Consensus 322 ~~~A~~~~~~ 331 (359)
T 3ieg_A 322 YDEAIQDYEA 331 (359)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999887
No 43
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.67 E-value=2.3e-14 Score=138.47 Aligned_cols=253 Identities=8% Similarity=-0.048 Sum_probs=189.9
Q ss_pred hhhhhhHHHHHHhhchh---cc------ccccccHHHHHHHHHHHHhhhccccc---------CCCCCHHHHHHHHHH--
Q psy10061 6 KKEEGMEYVKSAEKHSL---ST------MTSDRKKEEGMEYVKSAEKHLKTSLL---------KWKPDYDSAADDYSK-- 65 (325)
Q Consensus 6 ~~~~~~~~~~~ae~~~~---~~------~~~~~~~~eA~~l~~~A~~~~~~~~~---------~~~~~~~~A~~~y~~-- 65 (325)
+..+|..++.++.+.-. .| +...+++++|+++|.++.+....... ...+++++|.+.|.+
T Consensus 287 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 366 (597)
T 2xpi_A 287 ELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV 366 (597)
T ss_dssp HHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 35666777766655311 12 22346899999999998765432110 013666777666554
Q ss_pred ------------HHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 66 ------------AATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ 133 (325)
Q Consensus 66 ------------a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~ 133 (325)
++.+|...|++++|..+|.++..+... + ..++..++.+|...|++++|+.++++++.+...
T Consensus 367 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 439 (597)
T 2xpi_A 367 DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ--F----GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG- 439 (597)
T ss_dssp HHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-
T ss_pred hhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-
Confidence 467888999999999999998875432 1 347888999999999999999999998765332
Q ss_pred CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 134 GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES 212 (325)
Q Consensus 134 g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 212 (325)
+ ...+..+|.+|...+ +++|+.+|++++++.... ..++..+|.+|.+.|++++|+.+|++++++.++.
T Consensus 440 -~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 440 -T----HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD------PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp -C----SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred -c----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 1 346788999998887 999999999999875432 3578899999999999999999999999987765
Q ss_pred c-cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 213 E-HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 213 ~-~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
+ ++.....++..+|.++...|++++|.+.|+++ ..... ...+...|+.++ ..|+.+.+...+++
T Consensus 509 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN--DANVHTAIALVYLHKKIPGLAITHLHE 575 (597)
T ss_dssp CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4 33322457889999999999999999999997 33222 245677888887 59999999999887
No 44
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.66 E-value=3.3e-14 Score=126.17 Aligned_cols=222 Identities=7% Similarity=-0.055 Sum_probs=164.4
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI 107 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~ 107 (325)
.+++++|+.+|+++.+.... -...+..+|.++...|++++|..+|.+++.+.... ..++..+|
T Consensus 34 ~~~~~~A~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la 96 (327)
T 3cv0_A 34 LANLAEAALAFEAVCQAAPE-----------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------IAVHAALA 96 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC------HHHHHHHH
Confidence 45899999999998875422 23456678888999999999999999988774321 45788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH-----------------------------HHHcCCHHHHH--------------HHHH
Q psy10061 108 MMCKELNDLTDVENLAKQAATL-----------------------------FLEQGNREAAS--------------TVLE 144 (325)
Q Consensus 108 ~~y~~~g~~~eA~~~~~~A~~~-----------------------------~~~~g~~~~aa--------------~~l~ 144 (325)
.+|...|++++|+.++++++.. +...|++..+. ..+.
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 176 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHA 176 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Confidence 8999999999999888888753 22223333333 3455
Q ss_pred HHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Q psy10061 145 KGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAV 223 (325)
Q Consensus 145 ~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 223 (325)
.+|.++...+ +++|+.++++++++.... ..++..+|.++...|++++|+.+|++++.+.+. ...++.
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~ 244 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPDD------AQLWNKLGATLANGNRPQEALDAYNRALDINPG------YVRVMY 244 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHH
Confidence 6777777776 999999999998875432 357888999999999999999999998876432 123567
Q ss_pred HHHHHHHhcCCHHHHHHHHHhh----cccCC-Ch------HHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 224 ALVLVQLARGDTVAAEKAFKEW----GNCCE-AP------EVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 224 ~lg~~~~~~gd~~~A~~~~~~~----~~~~~-~~------e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
.+|.++...|++++|...|+++ +.... .. ...+...++.++ ..|+.+.+....++
T Consensus 245 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 245 NMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 8999999999999999999986 22111 11 455677888887 58999999888776
No 45
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.66 E-value=1.4e-15 Score=151.17 Aligned_cols=165 Identities=15% Similarity=0.120 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Q psy10061 57 DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNR 136 (325)
Q Consensus 57 ~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~ 136 (325)
+.-+++|..+|.+|..+|++++|+.+|++++++.... +.++.++|.+|..+|++++|+.+|++|+++...
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~---- 75 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF------AAAHSNLASVLQQQGKLQEALMHYKEAIRISPT---- 75 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Confidence 4557889999999999999999999999999886543 568999999999999999999999999987322
Q ss_pred HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH
Q psy10061 137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL 215 (325)
Q Consensus 137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 215 (325)
-+.++.++|.+|...+ +++|+++|++|+++.... ..++.++|.+|..+|++++|+..|++++++.+.
T Consensus 76 --~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~---- 143 (723)
T 4gyw_A 76 --FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF------ADAHSNLASIHKDSGNIPEAIASYRTALKLKPD---- 143 (723)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----
T ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Confidence 2457999999999988 999999999999985442 468999999999999999999999999987432
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 216 LAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 216 ~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
...++.++|.++...|++++|.+.++++
T Consensus 144 --~~~a~~~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 144 --FPDAYCNLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp --CHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred --ChHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence 1246789999999999999999999985
No 46
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.66 E-value=4.9e-15 Score=134.62 Aligned_cols=246 Identities=11% Similarity=-0.012 Sum_probs=182.5
Q ss_pred hhhhhhHHHHHHhhchhc----c------ccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCC
Q psy10061 6 KKEEGMEYVKSAEKHSLS----T------MTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKS 75 (325)
Q Consensus 6 ~~~~~~~~~~~ae~~~~~----~------~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~ 75 (325)
+..+|..++.+|-+.-.. | +...+++++|+++|.++.+.... . ...+..+|.+|...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~---~~~~~~l~~~~~~~g~ 148 (365)
T 4eqf_A 80 DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN--------N---LKALMALAVSYTNTSH 148 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------C---HHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--------C---HHHHHHHHHHHHcccc
Confidence 466777777777653321 2 22347899999999999886522 1 4568899999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCChH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q psy10061 76 FQQCKEYLLKAANCYETNKSAY----HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLE 151 (325)
Q Consensus 76 ~~~A~~~~~~a~~~~~~~~~~~----~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~ 151 (325)
+++|..+|.+++.+........ +.+..+..++.+|...|++++|+.++++++.+.....+ ..++..+|.++.
T Consensus 149 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~l~~~~~ 224 (365)
T 4eqf_A 149 QQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID----PDLQTGLGVLFH 224 (365)
T ss_dssp HHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC----HHHHHHHHHHHH
Confidence 9999999999998866533221 34667778899999999999999999999988543323 347889999999
Q ss_pred ccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q psy10061 152 ELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQL 230 (325)
Q Consensus 152 ~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~ 230 (325)
..+ +++|+.+|++++++.+.. ..++..+|.+|...|++++|+.+|++++.+.+.. ..++.++|.+|.
T Consensus 225 ~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~ 292 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVRPED------YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF------IRSRYNLGISCI 292 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc------hHHHHHHHHHHH
Confidence 887 999999999999986543 4588999999999999999999999999985543 246788999999
Q ss_pred hcCCHHHHHHHHHhh----cccCC-------ChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 231 ARGDTVAAEKAFKEW----GNCCE-------APEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 231 ~~gd~~~A~~~~~~~----~~~~~-------~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
..|++++|..+|+++ +...+ .....+...|+.++ ..|+.+.+..+.++
T Consensus 293 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 293 NLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999997 22211 11246777888987 59999999998887
No 47
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.66 E-value=6.3e-14 Score=130.56 Aligned_cols=193 Identities=13% Similarity=0.028 Sum_probs=130.6
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 70 FKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKS 149 (325)
Q Consensus 70 y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~ 149 (325)
+...|++++|+.+|.+++.+... ...++..+|.+|...|++++|+.++++++.... .+ ..++..+|.+
T Consensus 153 ~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~ 220 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDKILEVCVW------DAELRELRAECFIKEGEPRKAISDLKAASKLKN--DN----TEAFYKISTL 220 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC--SC----HHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHH
Confidence 44455555555555555443221 123455566666666666666666666665421 11 3467778888
Q ss_pred HhccC-HHHHHHHHHHHHHHHhcCCChhhH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHH
Q psy10061 150 LEELK-SDAALTLYSRAADVAHGEDNYKQA------AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLA 222 (325)
Q Consensus 150 ~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 222 (325)
|...+ +++|+.+|++++.+.......... ...+..+|.++...|++++|+.+|++++.+.+. ++......+
T Consensus 221 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~ 298 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS--IAEYTVRSK 298 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS--SHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--chHHHHHHH
Confidence 88877 999999999998775543211110 112244599999999999999999999886432 333334578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 223 VALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 223 ~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
..+|.++...|++++|...++++ ..... ...++..++.++ ..|+.+.+...+++
T Consensus 299 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 299 ERICHCFSKDEKPVEAIRVCSEVLQMEPD--NVNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 89999999999999999999997 33322 245677888887 69999999988876
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=4.7e-15 Score=128.80 Aligned_cols=221 Identities=9% Similarity=-0.060 Sum_probs=177.8
Q ss_pred chhhhhhHHHHHHhhchhc----ccc------ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcC
Q psy10061 5 RKKEEGMEYVKSAEKHSLS----TMT------SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAK 74 (325)
Q Consensus 5 ~~~~~~~~~~~~ae~~~~~----~~~------~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g 74 (325)
.+..+|..++.++-+.-.. |+. ..+++++|++++.++.+.. ++..-...+|...|.+|...|
T Consensus 17 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 17 NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--------NATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp TCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--------CTTTCCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--------CchhHHHHHHHHHHHHHHHcc
Confidence 3567888888888665432 322 2378999999999998832 222334677899999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHhcc
Q psy10061 75 SFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGA-KSLEEL 153 (325)
Q Consensus 75 ~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg-~~~~~~ 153 (325)
++++|+.+|.+++.+.... ..++.++|.+|...|++++|+.++++++.+ .-. -..++..+| .+|...
T Consensus 89 ~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~----~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDTTR------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTT----DPKVFYELGQAYYYNK 156 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTC------THHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCC----CHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCC----cHHHHHHHHHHHHHHH
Confidence 9999999999999876543 358999999999999999999999999877 112 245788999 888877
Q ss_pred CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHH
Q psy10061 154 KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE---FDKAADLIRQEIGYHQESEH--LLAIGRLAVALVLV 228 (325)
Q Consensus 154 ~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~lg~~ 228 (325)
++++|+.+|++++++.+.. ..++..+|.++..+|+ +++|+..|++++.+....++ ......++..+|.+
T Consensus 157 ~~~~A~~~~~~a~~~~p~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (272)
T 3u4t_A 157 EYVKADSSFVKVLELKPNI------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY 230 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 8999999999999986543 4678899999999999 99999999999999876655 33345688899999
Q ss_pred HHhcCCHHHHHHHHHhh-cccCCC
Q psy10061 229 QLARGDTVAAEKAFKEW-GNCCEA 251 (325)
Q Consensus 229 ~~~~gd~~~A~~~~~~~-~~~~~~ 251 (325)
|...|++++|.++|+++ ....+.
T Consensus 231 ~~~~~~~~~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 231 YTINRDKVKADAAWKNILALDPTN 254 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCccH
Confidence 99999999999999998 444333
No 49
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.65 E-value=8e-15 Score=132.85 Aligned_cols=223 Identities=11% Similarity=0.053 Sum_probs=168.5
Q ss_pred hhhhhhHHHHHHhhchhc----c------ccccccHHHHHHHHHHHHhhhcccc---------cCCCCCHHHHHHHHHH-
Q psy10061 6 KKEEGMEYVKSAEKHSLS----T------MTSDRKKEEGMEYVKSAEKHLKTSL---------LKWKPDYDSAADDYSK- 65 (325)
Q Consensus 6 ~~~~~~~~~~~ae~~~~~----~------~~~~~~~~eA~~l~~~A~~~~~~~~---------~~~~~~~~~A~~~y~~- 65 (325)
+..+|..++.++-+.-.. | +...+++++|+++|.++.+...... ....+++++|.+.|.+
T Consensus 79 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 158 (368)
T 1fch_A 79 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDW 158 (368)
T ss_dssp CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 467777777777654321 2 2234799999999999988764310 1114777777777775
Q ss_pred -----------------------------HHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH
Q psy10061 66 -----------------------------AATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDL 116 (325)
Q Consensus 66 -----------------------------a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~ 116 (325)
++.++ ..|++++|..+|.+++.+..... .+.++.++|.+|...|++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~----~~~~~~~l~~~~~~~g~~ 233 (368)
T 1fch_A 159 LRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSI----DPDVQCGLGVLFNLSGEY 233 (368)
T ss_dssp HHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSC----CHHHHHHHHHHHHHTTCH
T ss_pred HHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcc----cHHHHHHHHHHHHHcCCH
Confidence 33344 66777777777777776654322 256889999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCH
Q psy10061 117 TDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEF 195 (325)
Q Consensus 117 ~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 195 (325)
++|+.++++++.+... -..++..+|.++...+ +++|+.+|++++.+.+.. ..++..+|.+|..+|++
T Consensus 234 ~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 234 DKAVDCFTAALSVRPN------DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY------IRSRYNLGISCINLGAH 301 (368)
T ss_dssp HHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhCcC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCH
Confidence 9999999999887322 1457899999999887 999999999999875432 36889999999999999
Q ss_pred HHHHHHHHHHHHHHHHcccHHHH-----HHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 196 DKAADLIRQEIGYHQESEHLLAI-----GRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 196 ~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
++|+.+|++++.+.+....+... ..++..+|.++...|+++.|...+++.
T Consensus 302 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 302 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 99999999999988765333222 467889999999999999999998875
No 50
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.64 E-value=1.8e-13 Score=122.67 Aligned_cols=240 Identities=10% Similarity=0.115 Sum_probs=143.9
Q ss_pred ccccHHHHHHHHHHHHhhhcccc---------cCCCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHH
Q psy10061 27 SDRKKEEGMEYVKSAEKHLKTSL---------LKWKPDYDSAADDYSKA--------------ATCFKGAKSFQQCKEYL 83 (325)
Q Consensus 27 ~~~~~~eA~~l~~~A~~~~~~~~---------~~~~~~~~~A~~~y~~a--------------~~~y~~~g~~~~A~~~~ 83 (325)
..+++++|+++|.++.+...... ....+++++|...|.++ |.++...|++++|...|
T Consensus 15 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 94 (359)
T 3ieg_A 15 AAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDF 94 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHH
Confidence 34689999999999988653310 00124555555554443 33445555555555555
Q ss_pred HHHHHHHHhcCChHHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC
Q psy10061 84 LKAANCYETNKSAYHA---------AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK 154 (325)
Q Consensus 84 ~~a~~~~~~~~~~~~a---------a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~ 154 (325)
.+++.+....++.... ...+...+.++...|++++|+.++++++..... + ..++..+|.++...+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~ 168 (359)
T 3ieg_A 95 KKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW--D----AELRELRAECFIKEG 168 (359)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--c----hHHHHHHHHHHHHCC
Confidence 5554332200000000 111122245555556666666666555544221 1 235666777777776
Q ss_pred -HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHH------HHHHHHHHHH
Q psy10061 155 -SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLA------IGRLAVALVL 227 (325)
Q Consensus 155 -~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~lg~ 227 (325)
+++|+.++++++.+.+.. ..++..+|.++...|++++|+.+|++++.+.+....... .......+|.
T Consensus 169 ~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 242 (359)
T 3ieg_A 169 EPRKAISDLKAASKLKSDN------TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 242 (359)
T ss_dssp CHHHHHHHHHHHHTTCSCC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887653321 357788899999999999999999988876543322110 1112345688
Q ss_pred HHHhcCCHHHHHHHHHhh-cccCCChHH--HHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 228 VQLARGDTVAAEKAFKEW-GNCCEAPEV--QTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 228 ~~~~~gd~~~A~~~~~~~-~~~~~~~e~--~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
++...|++++|...|+++ ......... .+...++.++ ..|+.+.+...+++
T Consensus 243 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 297 (359)
T 3ieg_A 243 ELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE 297 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 899999999999999997 333333222 3455677776 58999998888876
No 51
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.64 E-value=9.6e-14 Score=129.31 Aligned_cols=239 Identities=11% Similarity=0.118 Sum_probs=152.2
Q ss_pred cccHHHHHHHHHHHHhhhcccc---------cCCCCCHHHHHHHHHH--------------HHHHHHhcCCHHHHHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSL---------LKWKPDYDSAADDYSK--------------AATCFKGAKSFQQCKEYLL 84 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~---------~~~~~~~~~A~~~y~~--------------a~~~y~~~g~~~~A~~~~~ 84 (325)
.+++++|+.+|.++.+...... ....+++++|...|.+ +|.+|...|++++|..+|.
T Consensus 39 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 118 (450)
T 2y4t_A 39 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFK 118 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3567777777777765432200 0012444444444443 3456666777777777776
Q ss_pred HHHHHHHhcC---Ch-HH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-
Q psy10061 85 KAANCYETNK---SA-YH-----AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK- 154 (325)
Q Consensus 85 ~a~~~~~~~~---~~-~~-----aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~- 154 (325)
+++.+..... .. .. ....+...|.+|...|++++|+.++++++.+... -..++..+|.+|...+
T Consensus 119 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~ 192 (450)
T 2y4t_A 119 KVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW------DAELRELRAECFIKEGE 192 (450)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTC
T ss_pred HHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHCCC
Confidence 6654322110 00 00 0112334466677777777777777776654211 1245777888888777
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHH------HHHHHHHHHHH
Q psy10061 155 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLA------IGRLAVALVLV 228 (325)
Q Consensus 155 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~lg~~ 228 (325)
+++|+.+|++++.+.... ..++..+|.+|...|++++|+.+|++++.+.+....... .......+|.+
T Consensus 193 ~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 266 (450)
T 2y4t_A 193 PRKAISDLKAASKLKNDN------TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE 266 (450)
T ss_dssp GGGGHHHHHHHHHHHCSC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998876432 367889999999999999999999999876443221110 11123456999
Q ss_pred HHhcCCHHHHHHHHHhh-cccCCChH--HHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 229 QLARGDTVAAEKAFKEW-GNCCEAPE--VQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 229 ~~~~gd~~~A~~~~~~~-~~~~~~~e--~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
+...|++++|...|+++ ........ ..+...++.++ ..|+.+.+...+++
T Consensus 267 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 267 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999997 33333322 34667788887 69999999888776
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=1.4e-13 Score=118.21 Aligned_cols=202 Identities=14% Similarity=0.097 Sum_probs=163.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 53 KPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLE 132 (325)
Q Consensus 53 ~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~ 132 (325)
..+....+..+...|.++...|++++|..+|.+++..... ...++..+|.+|...|++++|+.++++++.+...
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 103 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS------SADAHAALAVVFQTEMEPKLADEEYRKALASDSR 103 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3566677899999999999999999999999999877432 1568899999999999999999999999877322
Q ss_pred cCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 133 QGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 133 ~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 211 (325)
-..++..+|.++...+ +++|+.+|++++. .+.......++..+|.++...|++++|+.+|++++...+.
T Consensus 104 ------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 173 (252)
T 2ho1_A 104 ------NARVLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN 173 (252)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred ------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 1457889999999887 9999999999987 2222334578899999999999999999999999886422
Q ss_pred cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 212 SEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 212 ~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
. ..++..+|.++...|++++|...|+++ ...... ...+..++..+ ..|+.+.+...+++
T Consensus 174 ~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~A~~~~~~ 234 (252)
T 2ho1_A 174 Q------PSVALEMADLLYKEREYVPARQYYDLFAQGGGQN--ARSLLLGIRLAKVFEDRDTAASYGLQ 234 (252)
T ss_dssp C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC--HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred c------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 1 246678999999999999999999998 333333 34556677776 59999999998887
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=2e-13 Score=119.16 Aligned_cols=217 Identities=8% Similarity=0.018 Sum_probs=172.5
Q ss_pred ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Q psy10061 27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKG----AKSFQQCKEYLLKAANCYETNKSAYHAAKH 102 (325)
Q Consensus 27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~----~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~ 102 (325)
..+++++|+++|++|.+ . ++. ..+..+|.+|.. .+++++|..+|.++++. ++ ..+
T Consensus 18 ~~~~~~~A~~~~~~a~~---~------~~~----~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~----~~a 76 (273)
T 1ouv_A 18 KEKDFTQAKKYFEKACD---L------KEN----SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----NY----SNG 76 (273)
T ss_dssp HTTCHHHHHHHHHHHHH---T------TCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHH
T ss_pred hCCCHHHHHHHHHHHHH---C------CCH----HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----CC----HHH
Confidence 34689999999999987 2 121 457789999999 99999999999999865 22 568
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc----cC-HHHHHHHHHHHHHHHhcCC
Q psy10061 103 LEQAIMMCKE----LNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEE----LK-SDAALTLYSRAADVAHGED 173 (325)
Q Consensus 103 ~~~~~~~y~~----~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~----~~-~~~A~~~y~~Al~~~~~~~ 173 (325)
+.++|.+|.. .+++++|+.+|+++++. ++ ..++.++|.+|.. .+ +++|+.+|+++++. +
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~ 144 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDL----KY----AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL----N 144 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----CC----ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc----C
Confidence 8999999999 99999999999999875 44 4578999999987 65 99999999999974 2
Q ss_pred ChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHhh
Q psy10061 174 NYKQAAEYISRAARMCVR----VKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLA----RGDTVAAEKAFKEW 245 (325)
Q Consensus 174 ~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~----~gd~~~A~~~~~~~ 245 (325)
+ ..++.++|.+|.. .+++++|+.+|+++++. ++ ..++..+|.+|.. .+++++|..+|+++
T Consensus 145 ~----~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 212 (273)
T 1ouv_A 145 D----GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KD----SPGCFNAGNMYHHGEGATKNFKEALARYSKA 212 (273)
T ss_dssp C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred c----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 2 3578899999999 99999999999999874 22 2467889999999 99999999999998
Q ss_pred cccCCChHHHHHHHHHHHH-h----cCCHHHHHHHhcChhhhcccHHHHHH
Q psy10061 246 GNCCEAPEVQTLEKLLQAF-D----EEDPEGARQALNDPFIKHMDVEYSRL 291 (325)
Q Consensus 246 ~~~~~~~e~~~l~~L~~a~-~----~gd~~~~~~~~~~~~~~~l~~~~~~~ 291 (325)
-...+ ......|+..+ . .+|.+.+...+++.+-...+.....+
T Consensus 213 ~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 260 (273)
T 1ouv_A 213 CELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDIL 260 (273)
T ss_dssp HHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHH
T ss_pred HhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22221 45667788887 4 78888888888874433333333333
No 54
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.62 E-value=4e-14 Score=134.34 Aligned_cols=234 Identities=10% Similarity=-0.002 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q psy10061 31 KEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSF-QQCKEYLLKAANCYETNKSAYHAAKHLEQAIMM 109 (325)
Q Consensus 31 ~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~-~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~ 109 (325)
..+..+.+.++...+.... ...+.-+..+...|.+|...|++ ++|..+|.+++.+.... +.++.++|.+
T Consensus 77 ~~~~~~~~~~al~~l~~~~----~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~ 146 (474)
T 4abn_A 77 QQDVQEEMEKTLQQMEEVL----GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL------VEAWNQLGEV 146 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHH----TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh----ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC------HHHHHHHHHH
Confidence 3355555566555554321 12233467788899999999999 99999999999876432 4689999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---------C-HHHHHHHHHHHHHHHhcCCChhhHH
Q psy10061 110 CKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL---------K-SDAALTLYSRAADVAHGEDNYKQAA 179 (325)
Q Consensus 110 y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~---------~-~~~A~~~y~~Al~~~~~~~~~~~~~ 179 (325)
|...|++++|+.+|++++++. .+ ..++.++|.++... + +++|+.+|++++++.... .
T Consensus 147 ~~~~g~~~~A~~~~~~al~~~---p~----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~ 213 (474)
T 4abn_A 147 YWKKGDVTSAHTCFSGALTHC---KN----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD------G 213 (474)
T ss_dssp HHHHTCHHHHHHHHHHHHTTC---CC----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC------H
T ss_pred HHHcCCHHHHHHHHHHHHhhC---CC----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC------H
Confidence 999999999999999998763 22 37899999999988 7 999999999999986543 3
Q ss_pred HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCC
Q psy10061 180 EYISRAARMCVRV--------KEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCE 250 (325)
Q Consensus 180 ~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~ 250 (325)
.++..+|.+|..+ |++++|+.+|++++.+.+.. .....+++++|.+|...|++++|...|+++ .....
T Consensus 214 ~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 290 (474)
T 4abn_A 214 RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA---SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA 290 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc---ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 6889999999999 99999999999999874311 122357789999999999999999999998 33322
Q ss_pred ChHHHHHHHHHHHH-hcCCHHHHHHHhcChhhhcccHHHHHHhhcCC
Q psy10061 251 APEVQTLEKLLQAF-DEEDPEGARQALNDPFIKHMDVEYSRLARDLP 296 (325)
Q Consensus 251 ~~e~~~l~~L~~a~-~~gd~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 296 (325)
. ..+...++.++ ..|+.+.+.....+- ....+..++..|.
T Consensus 291 ~--~~a~~~l~~~~~~lg~~~eAi~~~~~~----~~~~l~~~~~~l~ 331 (474)
T 4abn_A 291 W--PEPQQREQQLLEFLSRLTSLLESKGKT----KPKKLQSMLGSLR 331 (474)
T ss_dssp C--HHHHHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHTCC
T ss_pred C--HHHHHHHHHHHHHHHHHHHHHHHhccc----cCccHHHHHHhch
Confidence 2 34566677776 477777776655441 1233455555554
No 55
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.9e-13 Score=126.95 Aligned_cols=246 Identities=9% Similarity=0.020 Sum_probs=187.7
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI 107 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~ 107 (325)
.+++++|.+++.++.+.... -++-.........++.++...|+++++..++.+++.+..+.++....+.++.++|
T Consensus 68 ~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la 142 (434)
T 4b4t_Q 68 MGAKDKLREFIPHSTEYMMQ-----FAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLA 142 (434)
T ss_dssp HTCHHHHHHHHHHTHHHHHT-----SCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH-----ccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 46788888888888777654 2344445566777788888899999999999999999999988888899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCCh-hhHHHHHHHH
Q psy10061 108 MMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY-KQAAEYISRA 185 (325)
Q Consensus 108 ~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~-~~~~~~~~~l 185 (325)
.+|...|++++|+.+++++.......++....+.++..+|.+|...+ +++|..+|++++.+.....+. ...+.++..+
T Consensus 143 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 222 (434)
T 4b4t_Q 143 TLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMS 222 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Confidence 99999999999999999999999999988889999999999999887 999999999999998887654 5557788999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHHHhcCCHHHHH-HHHHhh--cccCCChHHHHHHHH
Q psy10061 186 ARMCVRVKEFDKAADLIRQEIGYHQESEHL--LAIGRLAVALVLVQLARGDTVAAE-KAFKEW--GNCCEAPEVQTLEKL 260 (325)
Q Consensus 186 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~lg~~~~~~gd~~~A~-~~~~~~--~~~~~~~e~~~l~~L 260 (325)
|.++...|+|.+|..+|.++++.+...+.. ..........+.++.......... ..+..- .......+......|
T Consensus 223 g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 302 (434)
T 4b4t_Q 223 GILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAV 302 (434)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHH
Confidence 999999999999999999999998876532 111111122222222222222222 222221 222344556667777
Q ss_pred HHHHhcCCHHHHHHHhcC
Q psy10061 261 LQAFDEEDPEGARQALND 278 (325)
Q Consensus 261 ~~a~~~gd~~~~~~~~~~ 278 (325)
..++..++...+...+..
T Consensus 303 ~~~~~~~~l~~~~~~~~~ 320 (434)
T 4b4t_Q 303 AEAYNNRSLLDFNTALKQ 320 (434)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHH
Confidence 788777777777666543
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=2e-13 Score=114.49 Aligned_cols=198 Identities=10% Similarity=0.062 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Q psy10061 57 DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNR 136 (325)
Q Consensus 57 ~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~ 136 (325)
+.-...+...|.++...|++++|..+|.+++...... ..++..+|.+|...|++++|+.++++++.+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---- 74 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN------ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD---- 74 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----
Confidence 4456778899999999999999999999998875432 458899999999999999999999999876322
Q ss_pred HHHHHHHHHHHHHHhcc-C-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q psy10061 137 EAASTVLEKGAKSLEEL-K-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH 214 (325)
Q Consensus 137 ~~aa~~l~~lg~~~~~~-~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 214 (325)
-..++..+|.++... + +++|+.+++++++ .........++..+|.++...|++++|+.+|++++...+..
T Consensus 75 --~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-- 146 (225)
T 2vq2_A 75 --SAEINNNYGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF-- 146 (225)
T ss_dssp --CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--
T ss_pred --ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Confidence 134788999999988 7 9999999999987 22223335688899999999999999999999998864321
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccC-CChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 215 LLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCC-EAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 215 ~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~-~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
..++..+|.++...|++++|...++++ .... .... .+..+...+ ..|+.+.+....+.
T Consensus 147 ----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 147 ----PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD--DLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHH--HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHH
Confidence 246778999999999999999999997 3333 3333 344455555 58999988887766
No 57
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.61 E-value=1.1e-13 Score=131.74 Aligned_cols=219 Identities=13% Similarity=0.001 Sum_probs=170.1
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI 107 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~ 107 (325)
.+++++|+++|.++.+.. ++ ...+..+|.++...|++++|..+|.+++...... ..++..+|
T Consensus 256 ~~~~~~A~~~~~~~~~~~--------~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~ 317 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--------PT----PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY------PPTYYHRG 317 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--------CC----HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--------CC----chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC------HHHHHHHH
Confidence 468899999999887753 33 4567788999999999999999999988765432 45788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy10061 108 MMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAA 186 (325)
Q Consensus 108 ~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg 186 (325)
.+|...|++++|+.++++++.+..... .++..+|.++...+ +++|+.+|++++++.... ..++..+|
T Consensus 318 ~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~ 385 (537)
T 3fp2_A 318 QMYFILQDYKNAKEDFQKAQSLNPENV------YPYIQLACLLYKQGKFTESEAFFNETKLKFPTL------PEVPTFFA 385 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCS------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------THHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHH
Confidence 999999999999999999987643322 46788999988887 999999999999875443 24778889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc----------CCHHHHHHHHHhh-cccCCChHHH
Q psy10061 187 RMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLAR----------GDTVAAEKAFKEW-GNCCEAPEVQ 255 (325)
Q Consensus 187 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~----------gd~~~A~~~~~~~-~~~~~~~e~~ 255 (325)
.++...|++++|+.+|++++.+.+...........+..+|.++... |++++|...|+++ ...... ..
T Consensus 386 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~ 463 (537)
T 3fp2_A 386 EILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS--EQ 463 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC--HH
T ss_pred HHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC--HH
Confidence 9999999999999999999998776543222212345678888888 9999999999997 333222 35
Q ss_pred HHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 256 TLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 256 ~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
+...|+.++ ..|+.+.+...+++
T Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 464 AKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHH
Confidence 667788887 58999998888876
No 58
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.60 E-value=4.2e-14 Score=133.60 Aligned_cols=219 Identities=16% Similarity=0.041 Sum_probs=170.3
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI 107 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~ 107 (325)
.+++++|++++.++.+.. ++ ...+..+|.+|...|++++|...|.+++...... ..++..+|
T Consensus 250 ~~~~~~A~~~~~~~l~~~--------~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~ 311 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELF--------PR----VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN------SSVYYHRG 311 (514)
T ss_dssp SSCHHHHHHHHHHHHHHC--------CC----HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC------THHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhC--------cc----HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC------HHHHHHHH
Confidence 467888888888876643 33 5667778888888888888888888887654332 34788889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy10061 108 MMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAA 186 (325)
Q Consensus 108 ~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg 186 (325)
.+|...|++++|+.++++++.+.... ..++..+|.++...+ +++|+.+|++++...... ..++..+|
T Consensus 312 ~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la 379 (514)
T 2gw1_A 312 QMNFILQNYDQAGKDFDKAKELDPEN------IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA------PEVPNFFA 379 (514)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCSSC------SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTC------SHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhChhh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccC------HHHHHHHH
Confidence 99999999999999999988753321 236888999998887 999999999999876543 25788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHhh-cccCCChHHHHHHHHHH
Q psy10061 187 RMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLA---RGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQ 262 (325)
Q Consensus 187 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~---~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~ 262 (325)
.++...|++++|+.+|++++.+.+..........++..+|.++.. .|++++|...|+++ ...... ..+...++.
T Consensus 380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~ 457 (514)
T 2gw1_A 380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS--EQAKIGLAQ 457 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc--HHHHHHHHH
Confidence 999999999999999999998876543322222367889999999 99999999999997 332222 346677888
Q ss_pred HH-hcCCHHHHHHHhcC
Q psy10061 263 AF-DEEDPEGARQALND 278 (325)
Q Consensus 263 a~-~~gd~~~~~~~~~~ 278 (325)
++ ..|+.+.+...+++
T Consensus 458 ~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 458 MKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHH
Confidence 87 69999999998886
No 59
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=8.2e-14 Score=119.59 Aligned_cols=193 Identities=12% Similarity=-0.006 Sum_probs=157.0
Q ss_pred ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061 27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA 106 (325)
Q Consensus 27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~ 106 (325)
..+++++|+++|.++.+.... . ...+..+|.+|...|++++|..+|.+++..... ...++..+
T Consensus 49 ~~~~~~~A~~~~~~al~~~~~--------~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l 111 (252)
T 2ho1_A 49 QRGNTEQAKVPLRKALEIDPS--------S---ADAHAALAVVFQTEMEPKLADEEYRKALASDSR------NARVLNNY 111 (252)
T ss_dssp HTTCTGGGHHHHHHHHHHCTT--------C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCC--------h---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHH
Confidence 446899999999999876422 1 467888999999999999999999999887542 14678999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy10061 107 IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA 185 (325)
Q Consensus 107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l 185 (325)
|.+|...|++++|+.++++++. .+........+..+|.++...+ +++|+.+|++++++.... ..++..+
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l 181 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ------PSVALEM 181 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc------HHHHHHH
Confidence 9999999999999999999986 3334445678899999999887 999999999999875432 4578899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCCh
Q psy10061 186 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAP 252 (325)
Q Consensus 186 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~ 252 (325)
|.++...|++++|+.++++++...+. ....+..++.++...|++++|..+++++ ..+....
T Consensus 182 a~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 182 ADLLYKEREYVPARQYYDLFAQGGGQ------NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcC------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 99999999999999999998774321 1235677999999999999999999998 4444333
No 60
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.59 E-value=2e-13 Score=121.09 Aligned_cols=222 Identities=12% Similarity=0.092 Sum_probs=165.1
Q ss_pred hhhhhhHHHHHHhhchhc----c------ccccccHHHHHHHHHHHHhhhcccc---------cCCCCCHHHHHHHHHHH
Q psy10061 6 KKEEGMEYVKSAEKHSLS----T------MTSDRKKEEGMEYVKSAEKHLKTSL---------LKWKPDYDSAADDYSKA 66 (325)
Q Consensus 6 ~~~~~~~~~~~ae~~~~~----~------~~~~~~~~eA~~l~~~A~~~~~~~~---------~~~~~~~~~A~~~y~~a 66 (325)
+..+|..++.++-+.-.. | +...+++++|++++.++.+...... ....+++++|...|.++
T Consensus 36 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 115 (327)
T 3cv0_A 36 NLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 115 (327)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456777777777553321 2 2234789999999999988754310 11146777777777665
Q ss_pred HH-----------------------------HHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH
Q psy10061 67 AT-----------------------------CFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLT 117 (325)
Q Consensus 67 ~~-----------------------------~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~ 117 (325)
.. ++...|++++|..++.+++..... ...++..+|.+|...|+++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~ 189 (327)
T 3cv0_A 116 LLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN------DAQLHASLGVLYNLSNNYD 189 (327)
T ss_dssp HHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHH
T ss_pred HHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhccHH
Confidence 42 255566667777777776655432 2467888999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHH
Q psy10061 118 DVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFD 196 (325)
Q Consensus 118 eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 196 (325)
+|+.++++++.+... -..++..+|.++...+ +++|+.+|++++.+.+.. ..++..+|.+|..+|+++
T Consensus 190 ~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 190 SAAANLRRAVELRPD------DAQLWNKLGATLANGNRPQEALDAYNRALDINPGY------VRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhccHH
Confidence 999999999876321 1357889999999887 999999999999875432 357889999999999999
Q ss_pred HHHHHHHHHHHHHHHcccHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 197 KAADLIRQEIGYHQESEHLLA------IGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 197 ~A~~~~~~al~~~~~~~~~~~------~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
+|+.+|++++.+.+....... ...++..+|.++...|+++.|...+++.
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999998766332221 4567889999999999999999999875
No 61
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=4.7e-13 Score=112.14 Aligned_cols=195 Identities=10% Similarity=-0.041 Sum_probs=157.3
Q ss_pred ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061 27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA 106 (325)
Q Consensus 27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~ 106 (325)
..+++++|++++.++.+.... + ...+..+|.+|...|++++|..+|.+++.+.... ..++..+
T Consensus 20 ~~~~~~~A~~~~~~~~~~~~~-------~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l 82 (225)
T 2vq2_A 20 RGQDYRQATASIEDALKSDPK-------N----ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS------AEINNNY 82 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-------C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhCcc-------c----hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hHHHHHH
Confidence 346899999999999886532 1 4578889999999999999999999998875432 4578899
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHH
Q psy10061 107 IMMCKEL-NDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISR 184 (325)
Q Consensus 107 ~~~y~~~-g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~ 184 (325)
|.+|... |++++|+.++++++. .+........+..+|.++...+ +++|+.+++++++..... ..++..
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~ 152 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF------PPAFKE 152 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------chHHHH
Confidence 9999999 999999999999987 3333344567899999999887 999999999999875432 357889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHH
Q psy10061 185 AARMCVRVKEFDKAADLIRQEIGYHQ-ESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEV 254 (325)
Q Consensus 185 lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~ 254 (325)
+|.++...|++++|+.++++++.+.+ .. ...+..++.++...|+++.|..+++.. ..+.+..+.
T Consensus 153 la~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 153 LARTKMLAGQLGDADYYFKKYQSRVEVLQ------ADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEEL 218 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999988654 21 123466888899999999999999987 344444433
No 62
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=7.1e-14 Score=118.94 Aligned_cols=184 Identities=14% Similarity=0.042 Sum_probs=144.8
Q ss_pred ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061 27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA 106 (325)
Q Consensus 27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~ 106 (325)
..+++++|+++|.++.+... +. ...+..+|.++...|++++|..+|.+++.+... ...++..+
T Consensus 35 ~~~~~~~A~~~~~~~l~~~~--------~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l 97 (243)
T 2q7f_A 35 EFGDYEKAAEAFTKAIEENK--------ED---AIPYINFANLLSSVNELERALAFYDKALELDSS------AATAYYGA 97 (243)
T ss_dssp -------CCTTHHHHHTTCT--------TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHH
T ss_pred HhhCHHHHHHHHHHHHHhCc--------cc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc------chHHHHHH
Confidence 34689999999998877432 11 467788899999999999999999999877543 24678899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy10061 107 IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA 185 (325)
Q Consensus 107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l 185 (325)
|.+|...|++++|+.++++++.+... + ..++..+|.++...+ +++|+.++++++.+.... ..++..+
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l 165 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGME--N----GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND------TEARFQF 165 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCC--S----HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc------HHHHHHH
Confidence 99999999999999999999876432 1 346888999998887 999999999999875532 3578899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 186 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 186 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
|.++...|++++|+.+|++++...+. ...++..+|.++...|++++|..+|+++
T Consensus 166 ~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 166 GMCLANEGMLDEALSQFAAVTEQDPG------HADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999876332 1246788999999999999999999997
No 63
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.57 E-value=1.9e-13 Score=118.61 Aligned_cols=196 Identities=12% Similarity=0.022 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Q psy10061 60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAA 139 (325)
Q Consensus 60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~a 139 (325)
.+.+...|..+...|+|++|+..|.+++..+.. ......++..+|.+|..+|++++|+..|++++.++..... .
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~ 88 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT---HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR---V 88 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---H
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch---h
Confidence 345667788888999999999999998776543 2234678999999999999999999999999988654433 3
Q ss_pred HHHHHHHHHHHhc--------cC-HHHHHHHHHHHHHHHhcCCChhhHH-----------HHHHHHHHHHHHcCCHHHHH
Q psy10061 140 STVLEKGAKSLEE--------LK-SDAALTLYSRAADVAHGEDNYKQAA-----------EYISRAARMCVRVKEFDKAA 199 (325)
Q Consensus 140 a~~l~~lg~~~~~--------~~-~~~A~~~y~~Al~~~~~~~~~~~~~-----------~~~~~lg~~~~~~g~~~~A~ 199 (325)
..++..+|.++.. .+ +++|+..|++++..++.......+. ..+..+|.+|...|+|++|+
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 4578899999987 66 9999999999999887654322111 12278999999999999999
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc----------CCHHHHHHHHHhh-cccCCChHHH-HHHHHHHHH
Q psy10061 200 DLIRQEIGYHQESEHLLAIGRLAVALVLVQLAR----------GDTVAAEKAFKEW-GNCCEAPEVQ-TLEKLLQAF 264 (325)
Q Consensus 200 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~----------gd~~~A~~~~~~~-~~~~~~~e~~-~l~~L~~a~ 264 (325)
..|++++...+... ....+++.+|.+|... |++++|...|+++ ..+.++.... +...|....
T Consensus 169 ~~~~~~l~~~p~~~---~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~ 242 (261)
T 3qky_A 169 VTYEAVFDAYPDTP---WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRAR 242 (261)
T ss_dssp HHHHHHHHHCTTST---THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCc---hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 99999998754422 1335678899999977 9999999999998 6666555443 333344443
No 64
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=1.4e-12 Score=112.98 Aligned_cols=155 Identities=6% Similarity=-0.105 Sum_probs=121.1
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI 107 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~ 107 (325)
.+++++|+++|.++.+... .+.+.-...+...|.+|...|++++|..+|.+++.+... -..++..+|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la 84 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRA-------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLG 84 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSC-------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhccc-------ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC------cHHHHHHHH
Confidence 4789999999999987642 334566788899999999999999999999999987543 145789999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy10061 108 MMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAA 186 (325)
Q Consensus 108 ~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg 186 (325)
.+|...|++++|+.++++++.+.... ..++..+|.+|...+ +++|+.+|++++++..... .... ..
T Consensus 85 ~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~------~~~~-~~ 151 (275)
T 1xnf_A 85 IYLTQAGNFDAAYEAFDSVLELDPTY------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP------FRSL-WL 151 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHH-HH
T ss_pred HHHHHccCHHHHHHHHHHHHhcCccc------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh------HHHH-HH
Confidence 99999999999999999999874322 357889999998887 9999999999998765431 1111 22
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH
Q psy10061 187 RMCVRVKEFDKAADLIRQEIGY 208 (325)
Q Consensus 187 ~~~~~~g~~~~A~~~~~~al~~ 208 (325)
.++...|++++|+.++++++..
T Consensus 152 ~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 152 YLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhc
Confidence 2335668888888888777654
No 65
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.57 E-value=1e-13 Score=120.32 Aligned_cols=209 Identities=13% Similarity=0.085 Sum_probs=157.9
Q ss_pred hhhhhHHHHHHhhchhccccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy10061 7 KEEGMEYVKSAEKHSLSTMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKA 86 (325)
Q Consensus 7 ~~~~~~~~~~ae~~~~~~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a 86 (325)
+..++.++..|... ...++|++|+++|.++.+.. ++.+...+.+..+|.+|...|++++|+..|.++
T Consensus 12 ~~~~~~~~~~a~~~-----~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~ 78 (261)
T 3qky_A 12 HSSPQEAFERAMEF-----YNQGKYDRAIEYFKAVFTYG--------RTHEWAADAQFYLARAYYQNKEYLLAASEYERF 78 (261)
T ss_dssp CSSHHHHHHHHHHH-----HHTTCHHHHHHHHHHHGGGC--------SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-----HHhCCHHHHHHHHHHHHHhC--------CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 34445555555442 23468999999999988765 333455788899999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHcCCHHHHH-----------HHHHHHH
Q psy10061 87 ANCYETNKSAYHAAKHLEQAIMMCKE--------LNDLTDVENLAKQAATLFLEQGNREAAS-----------TVLEKGA 147 (325)
Q Consensus 87 ~~~~~~~~~~~~aa~~~~~~~~~y~~--------~g~~~eA~~~~~~A~~~~~~~g~~~~aa-----------~~l~~lg 147 (325)
+..+.... ....++..+|.+|.. +|++++|+.+|++++..+........+. ..+..+|
T Consensus 79 l~~~p~~~---~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la 155 (261)
T 3qky_A 79 IQIYQIDP---RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAA 155 (261)
T ss_dssp HHHCTTCT---THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCc---hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98875432 345789999999999 9999999999999998876554433322 1237889
Q ss_pred HHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHHcccHH
Q psy10061 148 KSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRV----------KEFDKAADLIRQEIGYHQESEHLL 216 (325)
Q Consensus 148 ~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~ 216 (325)
.+|...+ +++|+.+|+++++.++... ....++..+|.+|..+ |++++|+.+|++++..++...
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~--- 229 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTP---WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP--- 229 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTST---THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT---
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCc---hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh---
Confidence 9999887 9999999999999876542 2356888999999977 999999999999998765432
Q ss_pred HHHHHHHHHHHHHHhcCCHHH
Q psy10061 217 AIGRLAVALVLVQLARGDTVA 237 (325)
Q Consensus 217 ~~~~~~~~lg~~~~~~gd~~~ 237 (325)
....+...++.++...+++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 122344566777666655544
No 66
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.57 E-value=2.8e-13 Score=128.88 Aligned_cols=219 Identities=15% Similarity=0.135 Sum_probs=172.1
Q ss_pred hhhhhHHHHHHhhchhc---------cccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHH
Q psy10061 7 KEEGMEYVKSAEKHSLS---------TMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQ 77 (325)
Q Consensus 7 ~~~~~~~~~~ae~~~~~---------~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~ 77 (325)
..+|..++.++-+.-.. .+...+++++|++++.++.+.... . ...+...|.+|...|+++
T Consensus 259 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~---~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 259 LLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE--------Y---PPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT--------C---HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC--------C---HHHHHHHHHHHHhcCCHH
Confidence 45677777766553321 233457899999999999876532 2 346888999999999999
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HH
Q psy10061 78 QCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SD 156 (325)
Q Consensus 78 ~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~ 156 (325)
+|...|.+++.+.... ..++..+|.+|...|++++|+.++++++.+.... ..++..+|.++...+ ++
T Consensus 328 ~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~ 395 (537)
T 3fp2_A 328 NAKEDFQKAQSLNPEN------VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL------PEVPTFFAEILTDRGDFD 395 (537)
T ss_dssp HHHHHHHHHHHHCTTC------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------THHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhCCHH
Confidence 9999999999876543 2578899999999999999999999999874332 346888999999887 99
Q ss_pred HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q psy10061 157 AALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRV----------KEFDKAADLIRQEIGYHQESEHLLAIGRLAVALV 226 (325)
Q Consensus 157 ~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 226 (325)
+|+.+|++++++.............+..+|.++... |++++|+.+|++++.+.+.. ..++..+|
T Consensus 396 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~ 469 (537)
T 3fp2_A 396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS------EQAKIGLA 469 (537)
T ss_dssp HHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred HHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC------HHHHHHHH
Confidence 999999999999987665444445667889999999 99999999999999874321 24678899
Q ss_pred HHHHhcCCHHHHHHHHHhh-cccCCChHH
Q psy10061 227 LVQLARGDTVAAEKAFKEW-GNCCEAPEV 254 (325)
Q Consensus 227 ~~~~~~gd~~~A~~~~~~~-~~~~~~~e~ 254 (325)
.+|...|++++|...|+++ .......+.
T Consensus 470 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 470 QLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 9999999999999999998 333333333
No 67
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.56 E-value=1.8e-13 Score=128.43 Aligned_cols=244 Identities=14% Similarity=0.081 Sum_probs=163.9
Q ss_pred ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCh--HHHHHHHH
Q psy10061 27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSA--YHAAKHLE 104 (325)
Q Consensus 27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~--~~aa~~~~ 104 (325)
..|++++|+++|++|+++.+.... .......+..|.++|.+|..+|++++|..+|.+++.+.+..... ...+.++.
T Consensus 63 ~~G~~~eAl~~~~kAl~~~~~~~~--~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~ 140 (472)
T 4g1t_A 63 LKGQNEAALECLRKAEELIQQEHA--DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC 140 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSG--GGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhcCc--cccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH
Confidence 347999999999999998765210 12234456789999999999999999999999999999876532 23456777
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHHHHHH-----------------HcCCHHHHHHH--------------HHHHHHHHh
Q psy10061 105 QAIMMCKEL--NDLTDVENLAKQAATLFL-----------------EQGNREAASTV--------------LEKGAKSLE 151 (325)
Q Consensus 105 ~~~~~y~~~--g~~~eA~~~~~~A~~~~~-----------------~~g~~~~aa~~--------------l~~lg~~~~ 151 (325)
+.|.++... +++++|+.+|++|+++.. ..++...+... +..+|..+.
T Consensus 141 ~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~ 220 (472)
T 4g1t_A 141 EEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLH 220 (472)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHH
Confidence 787776654 469999999999987521 12222222222 223333332
Q ss_pred cc----C-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH-HHH-------
Q psy10061 152 EL----K-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL-LAI------- 218 (325)
Q Consensus 152 ~~----~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~------- 218 (325)
.. + +++|+.+|++++.+.... ..++.++|.+|...|++++|+..|++++++.+..... ...
T Consensus 221 ~~~~~~~~~~~a~~~~~~al~~~~~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~ 294 (472)
T 4g1t_A 221 KMREEGEEEGEGEKLVEEALEKAPGV------TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAK 294 (472)
T ss_dssp HCC------CHHHHHHHHHHHHCSSC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHhCccH------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 21 2 667777777777654332 3578899999999999999999999998764331100 000
Q ss_pred ---------------------------------------HHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCC-ChHHHHH
Q psy10061 219 ---------------------------------------GRLAVALVLVQLARGDTVAAEKAFKEW-GNCCE-APEVQTL 257 (325)
Q Consensus 219 ---------------------------------------~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~-~~e~~~l 257 (325)
..++..+|.+|...|++++|+++|+++ ..... .....+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~ 374 (472)
T 4g1t_A 295 VFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH 374 (472)
T ss_dssp HHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 112457899999999999999999997 22222 2222334
Q ss_pred HHHHHH--HhcCCHHHHHHHhcC
Q psy10061 258 EKLLQA--FDEEDPEGARQALND 278 (325)
Q Consensus 258 ~~L~~a--~~~gd~~~~~~~~~~ 278 (325)
..++.. +..|+.+.+.....+
T Consensus 375 ~~~~~~~~~~~~~~~~Ai~~y~k 397 (472)
T 4g1t_A 375 LRYGNFQLYQMKCEDKAIHHFIE 397 (472)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Confidence 455553 357888888777655
No 68
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.56 E-value=2.3e-13 Score=115.55 Aligned_cols=160 Identities=8% Similarity=0.059 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10061 61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAAS 140 (325)
Q Consensus 61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa 140 (325)
+.+...|.++...|++++|+.+|.+++++.... +. .++.++|.+|..+|++++|+.++++++.+.. .-.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~ 76 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ-DS----VTAYNCGVCADNIKKYKEAADYFDIAIKKNY------NLA 76 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC------SHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC-Cc----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc------chH
Confidence 677888999999999999999999999887421 21 4667799999999999999999999985421 235
Q ss_pred HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHH
Q psy10061 141 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDN-YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI 218 (325)
Q Consensus 141 ~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 218 (325)
.++..+|.+|...+ +++|+.+|++++.+.+.... ....+.++..+|.++..+|++++|+.+|++++.+.+. ...
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~ 152 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK----KWK 152 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH----HHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC----ccc
Confidence 67899999999887 99999999999998775432 2233568999999999999999999999999886221 002
Q ss_pred HHHHHHHHHHHHhcCCH
Q psy10061 219 GRLAVALVLVQLARGDT 235 (325)
Q Consensus 219 ~~~~~~lg~~~~~~gd~ 235 (325)
..++.++|.+|...|+.
T Consensus 153 ~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 153 TDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45778899999887765
No 69
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.55 E-value=2.2e-13 Score=127.87 Aligned_cols=230 Identities=13% Similarity=0.083 Sum_probs=143.4
Q ss_pred cHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC---hHHHHHHHHHH
Q psy10061 30 KKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKS---AYHAAKHLEQA 106 (325)
Q Consensus 30 ~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~---~~~aa~~~~~~ 106 (325)
+.+.++..+.+.....-. -.+...-+..|+.+|.+|..+|++++|+++|.+|+++.+.... ....+.+|.++
T Consensus 26 ~~~~~l~~~e~~~~~~~~-----~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nl 100 (472)
T 4g1t_A 26 EGENSLDDFEDKVFYRTE-----FQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNY 100 (472)
T ss_dssp TTCCCHHHHHHHHHHHTT-----SCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----hCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHH
Confidence 445555555554433221 1233444788999999999999999999999999999876532 23457789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHhcc--C-HHHHHHHHHHHHHHHhcCCChhhHHHH
Q psy10061 107 IMMCKELNDLTDVENLAKQAATLFLEQGNR--EAASTVLEKGAKSLEEL--K-SDAALTLYSRAADVAHGEDNYKQAAEY 181 (325)
Q Consensus 107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~--~~aa~~l~~lg~~~~~~--~-~~~A~~~y~~Al~~~~~~~~~~~~~~~ 181 (325)
|.+|..+|++++|+.++++++.+.....+. ...+.++.+.|..+... + +++|+.+|++|+++.+.. ..+
T Consensus 101 a~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~------~~~ 174 (472)
T 4g1t_A 101 AWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN------PEF 174 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC------HHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC------HHH
Confidence 999999999999999999999999887542 23456777888766543 4 999999999999886542 234
Q ss_pred HHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH----HHhcCCHHHHHHHHHhh-cccCCChH
Q psy10061 182 ISRAARMC---VRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLV----QLARGDTVAAEKAFKEW-GNCCEAPE 253 (325)
Q Consensus 182 ~~~lg~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~----~~~~gd~~~A~~~~~~~-~~~~~~~e 253 (325)
+..+|.++ ...+++++|++.|++++.+.+.. . .++..+|.+ +...|++++|..+++++ ..... .
T Consensus 175 ~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~--~----~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~--~ 246 (472)
T 4g1t_A 175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN--Q----YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG--V 246 (472)
T ss_dssp HHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC--H----HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS--C
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc--h----HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc--H
Confidence 44555443 34466677777777777653211 1 112222322 22334555555555554 11111 1
Q ss_pred HHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 254 VQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 254 ~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
..+...++..+ ..|+.+.+...+.+
T Consensus 247 ~~~~~~lg~~~~~~~~~~~A~~~~~~ 272 (472)
T 4g1t_A 247 TDVLRSAAKFYRRKDEPDKAIELLKK 272 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 23344555554 35555555555444
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.54 E-value=4e-14 Score=134.34 Aligned_cols=186 Identities=12% Similarity=0.053 Sum_probs=152.8
Q ss_pred ccccH-HHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy10061 27 SDRKK-EEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQ 105 (325)
Q Consensus 27 ~~~~~-~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~ 105 (325)
..++| ++|+++|++|.+... +. .+.+..+|.+|...|++++|..+|.+++.+.. + ..++.+
T Consensus 114 ~~g~~~~~A~~~~~~al~~~p--------~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~----~~~~~~ 175 (474)
T 4abn_A 114 VTPDYSPEAEVLLSKAVKLEP--------EL---VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK---N----KVSLQN 175 (474)
T ss_dssp SSSSCCHHHHHHHHHHHHHCT--------TC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCC---C----HHHHHH
T ss_pred hccccHHHHHHHHHHHHhhCC--------CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---C----HHHHHH
Confidence 34689 999999999987652 22 35788999999999999999999999987642 2 378999
Q ss_pred HHHHHHHc---------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--------C-HHHHHHHHHHHHH
Q psy10061 106 AIMMCKEL---------NDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL--------K-SDAALTLYSRAAD 167 (325)
Q Consensus 106 ~~~~y~~~---------g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~--------~-~~~A~~~y~~Al~ 167 (325)
+|.+|..+ |++++|+.+|++++++.... ..++.++|.+|... + +++|+.+|++++.
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 249 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD------GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK 249 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 99999999 99999999999999874322 34788999999876 6 9999999999999
Q ss_pred HHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 168 VAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 168 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
+.... .....++.++|.+|..+|++++|+.+|++++.+.+.. ..++..++.++...|++++|.+.+.+.
T Consensus 250 ~~p~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 250 VDRKA---SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW------PEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HCGGG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hCCCc---ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 85421 1235789999999999999999999999999874332 246678999999999999999877664
No 71
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.54 E-value=8.2e-14 Score=138.37 Aligned_cols=159 Identities=13% Similarity=0.091 Sum_probs=136.6
Q ss_pred cccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q psy10061 24 TMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHL 103 (325)
Q Consensus 24 ~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~ 103 (325)
.+...|++++|+++|++|+++. +++ ..+|..+|.+|..+|++++|+.+|.+++++.... +.++
T Consensus 18 ~~~~~G~~~eAi~~~~kAl~l~--------P~~---~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~------~~a~ 80 (723)
T 4gyw_A 18 IKREQGNIEEAVRLYRKALEVF--------PEF---AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF------ADAY 80 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--------SCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHH
Confidence 3444579999999999998875 333 3568899999999999999999999999886432 5689
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHH
Q psy10061 104 EQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYI 182 (325)
Q Consensus 104 ~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~ 182 (325)
.++|.+|..+|++++|+.+|++|+++-.. -+.++.++|.+|...+ +++|+.+|++|+++.... ..++
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P~------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~------~~a~ 148 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQINPA------FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF------PDAY 148 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHH
Confidence 99999999999999999999999987321 2457999999999998 999999999999986543 4689
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 183 SRAARMCVRVKEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 183 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 211 (325)
.++|.+|..+|++++|++.+++++++...
T Consensus 149 ~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 149 CNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred hhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 99999999999999999999999998764
No 72
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=2.6e-13 Score=115.39 Aligned_cols=196 Identities=11% Similarity=0.058 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Q psy10061 57 DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNR 136 (325)
Q Consensus 57 ~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~ 136 (325)
.-.+..|...|.++...|++++|..+|.+++..... ...++..+|.+|...|++++|+.++++++.+...
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---- 89 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE------DAIPYINFANLLSSVNELERALAFYDKALELDSS---- 89 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc----
Confidence 345677888899999999999999999998864322 2568899999999999999999999999877332
Q ss_pred HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH
Q psy10061 137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL 215 (325)
Q Consensus 137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 215 (325)
-..++..+|.++...+ +++|+.+|++++++.... ..++..+|.++...|++++|+.++++++.+.+..
T Consensus 90 --~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--- 158 (243)
T 2q7f_A 90 --AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN------GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND--- 158 (243)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC---
T ss_pred --chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---
Confidence 2457889999999887 999999999999876543 3578899999999999999999999998864321
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 216 LAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 216 ~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
..++..+|.++...|++++|...|+++ ..... ...+...++.++ ..|+.+.+...+++
T Consensus 159 ---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 159 ---TEARFQFGMCLANEGMLDEALSQFAAVTEQDPG--HADAFYNAGVTYAYKENREKALEMLDK 218 (243)
T ss_dssp ---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 236788999999999999999999998 33222 244677888887 69999999999887
No 73
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=1.7e-12 Score=113.25 Aligned_cols=184 Identities=16% Similarity=0.123 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCC
Q psy10061 60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKE----LNDLTDVENLAKQAATLFLEQGN 135 (325)
Q Consensus 60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~----~g~~~eA~~~~~~A~~~~~~~g~ 135 (325)
.+.+..+|.+|...|++++|..+|.++++ .++ ..++.++|.+|.. .+++++|+.+|++++++ ++
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~ 73 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD----LKE----NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----NY 73 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCC----HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----CC
Confidence 45677899999999999999999999987 333 3578999999999 99999999999999865 33
Q ss_pred HHHHHHHHHHHHHHHhc----cC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q psy10061 136 REAASTVLEKGAKSLEE----LK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVR----VKEFDKAADLIRQEI 206 (325)
Q Consensus 136 ~~~aa~~l~~lg~~~~~----~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al 206 (325)
..++..+|.+|.. .+ +++|+.+|+++++. ++ ..++.++|.+|.. .+++++|+.+|++++
T Consensus 74 ----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 74 ----SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----KY----AEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp ----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----CC----ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 4578899999987 66 99999999999875 22 4688899999999 999999999999998
Q ss_pred HHHHHcccHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHhhcccCCChHHHHHHHHHHHH-h----cCCHHHHHHHhc
Q psy10061 207 GYHQESEHLLAIGRLAVALVLVQLA----RGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAF-D----EEDPEGARQALN 277 (325)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~lg~~~~~----~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~-~----~gd~~~~~~~~~ 277 (325)
+. ++ ..++.++|.+|.. .+++++|..+|+++-... .......|+..+ . .+|.+.+...++
T Consensus 142 ~~----~~----~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 210 (273)
T 1ouv_A 142 DL----ND----GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYS 210 (273)
T ss_dssp HT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred hc----Cc----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 74 22 2466789999998 999999999999982111 245667788876 5 789999998887
Q ss_pred C
Q psy10061 278 D 278 (325)
Q Consensus 278 ~ 278 (325)
+
T Consensus 211 ~ 211 (273)
T 1ouv_A 211 K 211 (273)
T ss_dssp H
T ss_pred H
Confidence 7
No 74
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.53 E-value=5.8e-13 Score=128.64 Aligned_cols=222 Identities=13% Similarity=0.050 Sum_probs=168.0
Q ss_pred hhhhhhHHHHHHhhchh----cc------ccccccHHHHHHHHHHHHhhhcccc---------cCCCCCHHHHHHHHHHH
Q psy10061 6 KKEEGMEYVKSAEKHSL----ST------MTSDRKKEEGMEYVKSAEKHLKTSL---------LKWKPDYDSAADDYSKA 66 (325)
Q Consensus 6 ~~~~~~~~~~~ae~~~~----~~------~~~~~~~~eA~~l~~~A~~~~~~~~---------~~~~~~~~~A~~~y~~a 66 (325)
+..+|.+++.++.+.-. .| +...+++++|.+++.++.+...... ....+++++|.+.|.++
T Consensus 320 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 399 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKS 399 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45677777777654221 12 2233577777777777664432210 11146777777666654
Q ss_pred --------------HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 67 --------------ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLE 132 (325)
Q Consensus 67 --------------~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~ 132 (325)
+.+|...|++++|...|.++....... ..++..++.+|...|++++|+.++++++++..
T Consensus 400 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~- 472 (597)
T 2xpi_A 400 STMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT------HLPYLFLGMQHMQLGNILLANEYLQSSYALFQ- 472 (597)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence 577889999999999999998664422 45788999999999999999999999987632
Q ss_pred cCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 133 QGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDN-YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 133 ~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 210 (325)
.+ ..++..+|.+|...+ +++|+.+|++++++.+..+. +.....++..+|.+|...|++++|+.+|++++++.+
T Consensus 473 -~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 473 -YD----PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp -CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred -CC----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 22 246889999999887 99999999999999876543 333357899999999999999999999999988632
Q ss_pred HcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 211 ESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 211 ~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
. ...++..+|.+|...|++++|.+.|+++
T Consensus 548 ~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 548 N------DANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp C------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred C------ChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 1 1246788999999999999999999998
No 75
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=4.4e-13 Score=109.77 Aligned_cols=155 Identities=12% Similarity=0.035 Sum_probs=130.1
Q ss_pred ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061 27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA 106 (325)
Q Consensus 27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~ 106 (325)
..|++++|++.|++|.+.- |+. .+.+..+|.+|...|++++|...+.++....... ..++...
T Consensus 17 ~~g~~~~A~~~~~~al~~~--------p~~---~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~ 79 (184)
T 3vtx_A 17 TKGDFDGAIRAYKKVLKAD--------PNN---VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS------AEAYYIL 79 (184)
T ss_dssp HHTCHHHHHHHHHHHHHHC--------TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC------HHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC--------CCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh------HHHHHHH
Confidence 3479999999999998865 332 3568899999999999999999999987765432 4578889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy10061 107 IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA 185 (325)
Q Consensus 107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l 185 (325)
|.++...+++++|+..+.+++.+... + ..++..+|.+|...+ +++|+.+|++++++.+.. ..++.++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~--~----~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l 147 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTV--Y----ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF------IRAYQSI 147 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcc--c----hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh------hhHHHHH
Confidence 99999999999999999999876332 2 346888999999888 999999999999885432 4688999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 186 ARMCVRVKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 186 g~~~~~~g~~~~A~~~~~~al~~~~ 210 (325)
|.+|..+|++++|+.+|++++++.+
T Consensus 148 g~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 148 GLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 9999999999999999999998743
No 76
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.53 E-value=1.2e-13 Score=127.33 Aligned_cols=201 Identities=10% Similarity=0.036 Sum_probs=159.0
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKS-FQQCKEYLLKAANCYETNKSAYHAAKHLEQA 106 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~-~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~ 106 (325)
.+++++|+++|.+|+++. +++ ...|...|.++..+|+ +++|+.+|.+++.+..+. ..++.++
T Consensus 110 ~g~~~~Al~~~~~al~l~--------P~~---~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~------~~a~~~~ 172 (382)
T 2h6f_A 110 DERSERAFKLTRDAIELN--------AAN---YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN------YQVWHHR 172 (382)
T ss_dssp TCCCHHHHHHHHHHHHHC--------TTC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred CCChHHHHHHHHHHHHhC--------ccC---HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC------HHHHHHH
Confidence 367899999999888765 222 3467788999999996 999999999999877543 4689999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy10061 107 IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA 185 (325)
Q Consensus 107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l 185 (325)
|.++..+|++++|+.+|++++.+-- ++ ..++.++|.++...+ +++|+.+|++++++.... ..++.++
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP--~~----~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~------~~a~~~l 240 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDA--KN----YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN------NSVWNQR 240 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCT--TC----HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCc--cC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHH
Confidence 9999999999999999999997632 22 347899999999888 999999999999986543 4689999
Q ss_pred HHHHHH-cCCHHHH-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHhhcccCCChHHHHH
Q psy10061 186 ARMCVR-VKEFDKA-----ADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARG--DTVAAEKAFKEWGNCCEAPEVQTL 257 (325)
Q Consensus 186 g~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g--d~~~A~~~~~~~~~~~~~~e~~~l 257 (325)
|.++.. .|.+++| +.+|++++.+.+.. ..+++++|.++...| ++.+|.+.+++. .. ..+...++
T Consensus 241 g~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~------~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al 312 (382)
T 2h6f_A 241 YFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN------ESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLI 312 (382)
T ss_dssp HHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHH
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHH
Confidence 999999 5555888 58899998864332 236788999999988 799999999887 22 22234567
Q ss_pred HHHHHHHh
Q psy10061 258 EKLLQAFD 265 (325)
Q Consensus 258 ~~L~~a~~ 265 (325)
..|+.++.
T Consensus 313 ~~La~~~~ 320 (382)
T 2h6f_A 313 AFLVDIYE 320 (382)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77788763
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.51 E-value=4.7e-13 Score=108.42 Aligned_cols=167 Identities=14% Similarity=0.086 Sum_probs=138.1
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q psy10061 55 DYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQG 134 (325)
Q Consensus 55 ~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g 134 (325)
+.+.....|...|.++...|++++|...|.+++..... ...++..+|.+|...|++++|+.++++++.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-- 74 (186)
T 3as5_A 3 NDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF------DVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-- 74 (186)
T ss_dssp -CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred ccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--
Confidence 33556788889999999999999999999888654332 2568899999999999999999999999877321
Q ss_pred CHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q psy10061 135 NREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE 213 (325)
Q Consensus 135 ~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 213 (325)
-..++..+|.++...+ +++|+.++++++.+.... ..++..+|.++...|++++|+.++++++...+..
T Consensus 75 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~- 143 (186)
T 3as5_A 75 ----NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN------FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE- 143 (186)
T ss_dssp ----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred ----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc-
Confidence 2356888999998877 999999999999875432 3578899999999999999999999998864221
Q ss_pred cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 214 HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 214 ~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..++..+|.++...|++++|..+++++
T Consensus 144 -----~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 144 -----GKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 246788999999999999999999996
No 78
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.5e-13 Score=129.80 Aligned_cols=226 Identities=15% Similarity=0.057 Sum_probs=178.4
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPD---YDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLE 104 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~---~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~ 104 (325)
.+++++|+++|.++.+.+...+.....+ .+.-...+...|.++...|++++|...|.+++..... ..++.
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-------~~~~~ 274 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-------VNSYI 274 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-------HHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-------HHHHH
Confidence 5789999999999998542211000122 2566788999999999999999999999999876432 67899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHH
Q psy10061 105 QAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYIS 183 (325)
Q Consensus 105 ~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~ 183 (325)
.+|.+|...|++++|+.++++++.+.... ..++..+|.++...+ +++|+.+|++++.+.... ..++.
T Consensus 275 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~ 342 (514)
T 2gw1_A 275 YMALIMADRNDSTEYYNYFDKALKLDSNN------SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN------IFPYI 342 (514)
T ss_dssp HHHHHHHTSSCCTTGGGHHHHHHTTCTTC------THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC------SHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhcCcCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh------HHHHH
Confidence 99999999999999999999998763322 336889999999887 999999999999875542 24788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----cccC-CChHHHHHH
Q psy10061 184 RAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW----GNCC-EAPEVQTLE 258 (325)
Q Consensus 184 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~~-~~~e~~~l~ 258 (325)
.+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|...|+++ +... ......+..
T Consensus 343 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 416 (514)
T 2gw1_A 343 QLACLAYRENKFDDCETLFSEAKRKFPEA------PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLV 416 (514)
T ss_dssp HHHHHTTTTTCHHHHHHHHHHHHHHSTTC------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcccC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence 99999999999999999999998864332 246678999999999999999999997 2221 111134677
Q ss_pred HHHHHH-h---cCCHHHHHHHhcC
Q psy10061 259 KLLQAF-D---EEDPEGARQALND 278 (325)
Q Consensus 259 ~L~~a~-~---~gd~~~~~~~~~~ 278 (325)
.++.++ . .|+.+.+...+++
T Consensus 417 ~l~~~~~~~~~~~~~~~A~~~~~~ 440 (514)
T 2gw1_A 417 GKATLLTRNPTVENFIEATNLLEK 440 (514)
T ss_dssp HHHHHHHTSCCTTHHHHHHHHHHH
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHH
Confidence 788876 6 7999999888876
No 79
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.50 E-value=2.1e-12 Score=109.86 Aligned_cols=176 Identities=13% Similarity=0.004 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10061 61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAAS 140 (325)
Q Consensus 61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa 140 (325)
+.+...|..+...|++++|+..|.+++..+... .....++..+|.+|...|++++|+..|++++..+..... +.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~---~~ 78 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFG---PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---ID 78 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc---HH
Confidence 345566788889999999999999998765432 234568899999999999999999999999987665443 33
Q ss_pred HHHHHHHHHHhc------------------cC-HHHHHHHHHHHHHHHhcCCChhhH-----------HHHHHHHHHHHH
Q psy10061 141 TVLEKGAKSLEE------------------LK-SDAALTLYSRAADVAHGEDNYKQA-----------AEYISRAARMCV 190 (325)
Q Consensus 141 ~~l~~lg~~~~~------------------~~-~~~A~~~y~~Al~~~~~~~~~~~~-----------~~~~~~lg~~~~ 190 (325)
.++..+|.++.. .+ +++|+..|+++++.++.......+ ......+|.+|.
T Consensus 79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~ 158 (225)
T 2yhc_A 79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYT 158 (225)
T ss_dssp HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667766653 34 999999999999988765432211 122257889999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 191 RVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 191 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..|+|++|+..|+++++.++... ....++..+|.+|..+|++++|.+.+++.
T Consensus 159 ~~~~~~~A~~~~~~~l~~~p~~~---~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 159 ERGAWVAVVNRVEGMLRDYPDTQ---ATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTSH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHHCcCCC---ccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 99999999999999998765432 23357889999999999999999999986
No 80
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.45 E-value=6.8e-12 Score=105.46 Aligned_cols=176 Identities=13% Similarity=0.006 Sum_probs=119.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q psy10061 66 AATCFKGAKSFQQCKEYLLKAANCYETN----------KSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGN 135 (325)
Q Consensus 66 a~~~y~~~g~~~~A~~~~~~a~~~~~~~----------~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~ 135 (325)
-|..+...|++++|+.+|.+++.+.... ...........++|.+|...|++++|+.+|++++.+... +
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~ 87 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN--N 87 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--C
Confidence 3444445555555555555555443211 111222333445999999999999999999999987432 2
Q ss_pred HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHc
Q psy10061 136 REAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEF--DKAADLIRQEIGYHQES 212 (325)
Q Consensus 136 ~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~~~~ 212 (325)
..++.++|.++...+ +++|+.+|++++++.+.. ..++.++|.+|...|+. ..+...|.+++.
T Consensus 88 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~----- 152 (208)
T 3urz_A 88 ----VDCLEACAEMQVCRGQEKDALRMYEKILQLEADN------LAANIFLGNYYYLTAEQEKKKLETDYKKLSS----- 152 (208)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHHHHHHHHHC---C-----
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-----
Confidence 457899999999887 999999999999986543 46889999999877643 445555555432
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHH
Q psy10061 213 EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKL 260 (325)
Q Consensus 213 ~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L 260 (325)
+......++..|.++...|++++|+.+|+++ ..+.+......+..+
T Consensus 153 --~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~i 199 (208)
T 3urz_A 153 --PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKI 199 (208)
T ss_dssp --CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred --CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 1122235677899999999999999999998 445444444444444
No 81
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.45 E-value=3.9e-12 Score=120.74 Aligned_cols=143 Identities=10% Similarity=0.078 Sum_probs=124.1
Q ss_pred cccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--CChHHHHHHH
Q psy10061 26 TSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN--KSAYHAAKHL 103 (325)
Q Consensus 26 ~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~ 103 (325)
...|+|++|+.+++++++...+.+ ++++...+..++.+|.+|..+|+|++|..++.++++++++. .++...+..+
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~l---g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVF---ADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTB---CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 345799999999999999887754 58889999999999999999999999999999999999865 4678899999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc
Q psy10061 104 EQAIMMCKELNDLTDVENLAKQAATLFLEQ-G-NREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHG 171 (325)
Q Consensus 104 ~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~-g-~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~ 171 (325)
+++|.+|..+|++++|+.+|++|+++.... | +....+..+..++..+..++ +.+|...|+++.+-+.+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998875 4 46677778888888888777 88888888888765533
No 82
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.44 E-value=2.4e-12 Score=118.75 Aligned_cols=194 Identities=11% Similarity=0.009 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCC
Q psy10061 57 DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELND-LTDVENLAKQAATLFLEQGN 135 (325)
Q Consensus 57 ~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~-~~eA~~~~~~A~~~~~~~g~ 135 (325)
+.-.+.|...+.++...|++++|+.+|.+++.+.... ..++.++|.++..+|+ +++|+.++++++.+.-.
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~--- 164 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK--- 164 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT---
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC------HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC---
Confidence 4457788899999999999999999999999876543 4689999999999997 99999999999986332
Q ss_pred HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q psy10061 136 REAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH 214 (325)
Q Consensus 136 ~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 214 (325)
-..++.++|.++...+ +++|+.+|++++++.... ..++.++|.++..+|++++|+.+|+++|.+.+..
T Consensus 165 ---~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~-- 233 (382)
T 2h6f_A 165 ---NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN-- 233 (382)
T ss_dssp ---CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC--
T ss_pred ---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--
Confidence 2447999999999888 999999999999986543 4689999999999999999999999999874321
Q ss_pred HHHHHHHHHHHHHHHHh-cCCHHHH-----HHHHHhh-cccCCChHHHHHHHHHHHHh-cC--CHHHHHHHh
Q psy10061 215 LLAIGRLAVALVLVQLA-RGDTVAA-----EKAFKEW-GNCCEAPEVQTLEKLLQAFD-EE--DPEGARQAL 276 (325)
Q Consensus 215 ~~~~~~~~~~lg~~~~~-~gd~~~A-----~~~~~~~-~~~~~~~e~~~l~~L~~a~~-~g--d~~~~~~~~ 276 (325)
..+++++|.++.. .|.+++| +.+|+++ ..-... ..+...++.++. .| +.+.+.+.+
T Consensus 234 ----~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~--~~a~~~l~~ll~~~g~~~~~~a~~~~ 299 (382)
T 2h6f_A 234 ----NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN--ESAWNYLKGILQDRGLSKYPNLLNQL 299 (382)
T ss_dssp ----HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHTTTCGGGCHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHccCccchHHHHHHH
Confidence 2467889999999 5555777 4788886 222111 234455555553 44 344444433
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.44 E-value=6.4e-12 Score=106.51 Aligned_cols=157 Identities=10% Similarity=-0.015 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHH
Q psy10061 101 KHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAA 179 (325)
Q Consensus 101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~ 179 (325)
..+.+.|.+|...|++++|+.+|++++++... .+. ..+..+|.++...+ +++|+.+|++++.+.+. ..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~ 76 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN-QDS----VTAYNCGVCADNIKKYKEAADYFDIAIKKNYN------LA 76 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS------HH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCC-CCc----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc------hH
Confidence 67899999999999999999999999987531 222 35667999999887 99999999999975433 35
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCCh--HHHH
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH-LLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAP--EVQT 256 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~--e~~~ 256 (325)
.++..+|.+|..+|++++|+.+|++++.+.+.... ......++..+|.++...|++++|++.|+++-... .. ...+
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 155 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDA 155 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHH
Confidence 68899999999999999999999999998655332 23345678999999999999999999999982222 23 3566
Q ss_pred HHHHHHHH-hcCCH
Q psy10061 257 LEKLLQAF-DEEDP 269 (325)
Q Consensus 257 l~~L~~a~-~~gd~ 269 (325)
...|+.++ ..|+.
T Consensus 156 ~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 156 LYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776 45655
No 84
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.44 E-value=6.5e-12 Score=97.19 Aligned_cols=102 Identities=13% Similarity=0.126 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc-cH
Q psy10061 138 AASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE-HL 215 (325)
Q Consensus 138 ~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~ 215 (325)
..+.++.++|..+...+ +++|+.+|++|+++.+.. ..++.++|.+|..+|+|++|+..|++++++.+... .+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 79 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADY 79 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhh
Confidence 34455556666655554 666666666666553321 24566666666666666666666666666655442 33
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 216 LAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 216 ~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
...+.++.++|.++..+|++++|+++|+++
T Consensus 80 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 80 KLIAKAMSRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444556666666666666666666666665
No 85
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.43 E-value=7.9e-12 Score=118.65 Aligned_cols=143 Identities=6% Similarity=0.009 Sum_probs=127.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHH
Q psy10061 67 ATCFKGAKSFQQCKEYLLKAANCYETN--KSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ--GNREAASTV 142 (325)
Q Consensus 67 ~~~y~~~g~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~--g~~~~aa~~ 142 (325)
+..++.+|+|++|...|.+++++..+. .++...+.++.++|.+|..+|+|++|+.+++++++++++. .+....+..
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 345678999999999999999999875 3567899999999999999999999999999999999875 456788999
Q ss_pred HHHHHHHHhccC-HHHHHHHHHHHHHHHhcC-C-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 143 LEKGAKSLEELK-SDAALTLYSRAADVAHGE-D-NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH 209 (325)
Q Consensus 143 l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~-~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 209 (325)
++++|.+|..++ +++|+.+|++|+++.+.. | ++....+++..++.++..++.|.+|...|+++.+-+
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988 999999999999999874 3 567778889999999999999999999999987755
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.40 E-value=1.8e-12 Score=103.34 Aligned_cols=146 Identities=8% Similarity=0.010 Sum_probs=108.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061 65 KAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLE 144 (325)
Q Consensus 65 ~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~ 144 (325)
.+|.+++..|++++|+..+.+++.. .......+..+|.+|...|++++|+.++++++++... + ..++.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~--~----~~a~~ 69 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER--D----PKAHR 69 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHH
Confidence 4677888888899998888887543 3344567788999999999999999999999877322 2 45788
Q ss_pred HHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHHHHcccHHHHHHHH
Q psy10061 145 KGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADL-IRQEIGYHQESEHLLAIGRLA 222 (325)
Q Consensus 145 ~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~~~~~~~ 222 (325)
.+|.+|...+ +++|+.+|++++++.+.. ..++.++|.+|..+|++++|+.. +++++.+.+.. ..++
T Consensus 70 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~------~~~~ 137 (150)
T 4ga2_A 70 FLGLLYELEENTDKAVECYRRSVELNPTQ------KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS------PAVY 137 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC------HHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC------HHHH
Confidence 9999999887 999999999999886543 36788999999999999887765 58888875432 1244
Q ss_pred HHHHHHHHhcCC
Q psy10061 223 VALVLVQLARGD 234 (325)
Q Consensus 223 ~~lg~~~~~~gd 234 (325)
...+.++..+|+
T Consensus 138 ~l~~~ll~~~G~ 149 (150)
T 4ga2_A 138 KLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHHHhCc
Confidence 556677776664
No 87
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.40 E-value=1e-11 Score=96.06 Aligned_cols=107 Identities=17% Similarity=0.126 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCC-C
Q psy10061 97 YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGED-N 174 (325)
Q Consensus 97 ~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~-~ 174 (325)
...+.++.++|++|.+.|+|++|+.+|++|+++... -+.++.++|.+|...+ +++|+.+|++++++.+... .
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 78 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD 78 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh
Confidence 456677778888888888888888888888776321 1446778888888776 8888888888888776653 4
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 175 YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH 209 (325)
Q Consensus 175 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 209 (325)
+...+.++.++|.++..+|++++|+++|++++.+.
T Consensus 79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45556788888989888999999999988888753
No 88
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.38 E-value=3.6e-11 Score=101.37 Aligned_cols=173 Identities=15% Similarity=0.052 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q psy10061 32 EEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCK 111 (325)
Q Consensus 32 ~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~ 111 (325)
.+|+++|++|.+. ++ .+.+..+|.+|...+++++|..+|.++++. ++ +.++.++|.+|.
T Consensus 3 ~eA~~~~~~aa~~---------g~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~----~~a~~~lg~~y~ 61 (212)
T 3rjv_A 3 TEPGSQYQQQAEA---------GD----RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GD----GDALALLAQLKI 61 (212)
T ss_dssp -CTTHHHHHHHHT---------TC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TC----HHHHHHHHHHTT
T ss_pred chHHHHHHHHHHC---------CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHH
Confidence 3577788877653 12 245778899999999999999999999753 44 468899999999
Q ss_pred HcC----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc----cC-HHHHHHHHHHHHHHHhcCCChhhHHHHH
Q psy10061 112 ELN----DLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEE----LK-SDAALTLYSRAADVAHGEDNYKQAAEYI 182 (325)
Q Consensus 112 ~~g----~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~----~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~ 182 (325)
. + ++++|+.+|++|++ .|+. .++.++|.+|.. .+ +++|+.+|++|++. ++......++
T Consensus 62 ~-~g~~~~~~~A~~~~~~A~~----~g~~----~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~ 128 (212)
T 3rjv_A 62 R-NPQQADYPQARQLAEKAVE----AGSK----SGEIVLARVLVNRQAGATDVAHAITLLQDAARD----SESDAAVDAQ 128 (212)
T ss_dssp S-STTSCCHHHHHHHHHHHHH----TTCH----HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHH
T ss_pred c-CCCCCCHHHHHHHHHHHHH----CCCH----HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHH
Confidence 8 7 89999999999964 4554 478899999986 33 99999999999753 3322335688
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc-C-----CHHHHHHHHHhh
Q psy10061 183 SRAARMCVR----VKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLAR-G-----DTVAAEKAFKEW 245 (325)
Q Consensus 183 ~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~-g-----d~~~A~~~~~~~ 245 (325)
.++|.+|.. .+++++|+.+|++++++ .++. .+++++|.+|... | |+++|..+|+++
T Consensus 129 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~----~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 129 MLLGLIYASGVHGPEDDVKASEYFKGSSSL---SRTG----YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp HHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---SCTT----HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---CCCH----HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 999999999 88999999999999864 1222 2567899999864 3 899999999997
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.38 E-value=3.1e-11 Score=102.54 Aligned_cols=166 Identities=4% Similarity=-0.095 Sum_probs=129.3
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI 107 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~ 107 (325)
.++|++|+..|.++.+.... ...+.+.+..+|.+|...|++++|+..|.++++.+..... +..++..+|
T Consensus 17 ~g~~~~A~~~~~~~~~~~p~--------~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~---~~~a~~~~g 85 (225)
T 2yhc_A 17 DGNWRQAITQLEALDNRYPF--------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---IDYVMYMRG 85 (225)
T ss_dssp HTCHHHHHHHHHHHHHHCTT--------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC--------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc---HHHHHHHHH
Confidence 46899999999999886533 3445677888999999999999999999999988765432 334566667
Q ss_pred HHHHH------------------cCCHHHHHHHHHHHHHHHHHcCCHHHH-----------HHHHHHHHHHHhccC-HHH
Q psy10061 108 MMCKE------------------LNDLTDVENLAKQAATLFLEQGNREAA-----------STVLEKGAKSLEELK-SDA 157 (325)
Q Consensus 108 ~~y~~------------------~g~~~eA~~~~~~A~~~~~~~g~~~~a-----------a~~l~~lg~~~~~~~-~~~ 157 (325)
.+|.. .|++++|+..|+++++.+........+ +.....+|.+|...+ +++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~ 165 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVA 165 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 66654 678999999999998776554433221 122346788888777 999
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061 158 ALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIG 207 (325)
Q Consensus 158 A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 207 (325)
|+..|+++++.++.. .....++..+|.+|.++|++++|++.+++++.
T Consensus 166 A~~~~~~~l~~~p~~---~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 166 VVNRVEGMLRDYPDT---QATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHSTTS---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCC---CccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 999999999988764 33457899999999999999999999987655
No 90
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.37 E-value=2.1e-10 Score=108.78 Aligned_cols=186 Identities=14% Similarity=0.095 Sum_probs=108.1
Q ss_pred cccHHHHHHHHHHHHhhhcc------cc-c----CCCCCHHHHHHHHHHH------------HHHHHh----cCCHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKT------SL-L----KWKPDYDSAADDYSKA------------ATCFKG----AKSFQQCK 80 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~------~~-~----~~~~~~~~A~~~y~~a------------~~~y~~----~g~~~~A~ 80 (325)
.+++++|+++|++|.+.-.. +. . ...+|++.|...|.++ |.+|.. .+++++|.
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 135 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESV 135 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 35777788877777654211 00 0 0146667777666665 345555 66777777
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc----
Q psy10061 81 EYLLKAANCYETNKSAYHAAKHLEQAIMMCKE----LNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEE---- 152 (325)
Q Consensus 81 ~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~----~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~---- 152 (325)
.+|.++++. ++ ..++.++|.+|.. .+++++|+.+|+++++. |+ ..++..+|.+|..
T Consensus 136 ~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~ 199 (490)
T 2xm6_A 136 KWFRLAAEQ----GR----DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----GN----VWSCNQLGYMYSRGLGV 199 (490)
T ss_dssp HHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHC----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCC
Confidence 777776543 22 3466777777776 66777777777777643 43 2356666666664
Q ss_pred cC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q psy10061 153 LK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVR----VKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVL 227 (325)
Q Consensus 153 ~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 227 (325)
.+ +++|+.+|+++++. ++ ..++..+|.+|.. .+++++|+.+|+++++. ++ ..+++.+|.
T Consensus 200 ~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~ 263 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATS----GD----ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ----GN----SIAQFRLGY 263 (490)
T ss_dssp CCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT----TC----HHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHH
Confidence 22 67777777766542 22 2345556666665 55666666666665442 11 123445555
Q ss_pred HHHh----cCCHHHHHHHHHhh
Q psy10061 228 VQLA----RGDTVAAEKAFKEW 245 (325)
Q Consensus 228 ~~~~----~gd~~~A~~~~~~~ 245 (325)
+|.. .+|+++|..+|+++
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a 285 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKS 285 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHH
Confidence 5555 55666666666654
No 91
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.36 E-value=3.4e-11 Score=106.76 Aligned_cols=192 Identities=12% Similarity=0.012 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Q psy10061 60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAA 139 (325)
Q Consensus 60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~a 139 (325)
...+..++..+...+++++|+..+.+.+.....-++ ..++..+|.+|...|++++|+.++++ -++
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~----~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~---- 129 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTN----TTFLLMAASIYFYDQNPDAALRTLHQ-------GDS---- 129 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSC----HHHHHHHHHHHHHTTCHHHHHHHHTT-------CCS----
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCC----HHHHHHHHHHHHHCCCHHHHHHHHhC-------CCC----
Confidence 456666677777777777777777665432100111 23566677777777777777777665 122
Q ss_pred HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHH
Q psy10061 140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI 218 (325)
Q Consensus 140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 218 (325)
..++..+|.++...+ +++|+..|++++++.+.. . .......+..++...|++++|+.+|++++...+. .
T Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~---~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~------~ 199 (291)
T 3mkr_A 130 LECMAMTVQILLKLDRLDLARKELKKMQDQDEDA---T-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP------T 199 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---H-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC------C
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc---H-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC------c
Confidence 235666677777666 777777777777663221 0 0001111112233446777777777777665221 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHH-HHHHHhcC
Q psy10061 219 GRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPE-GARQALND 278 (325)
Q Consensus 219 ~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~-~~~~~~~~ 278 (325)
..+++++|.++..+|++++|...|+++ ...... ..++..++.++ ..|+.+ .+...+++
T Consensus 200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~--~~~l~~l~~~~~~~g~~~eaa~~~~~~ 260 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH--PETLINLVVLSQHLGKPPEVTNRYLSQ 260 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 235566777777777777777777776 222221 33455666554 355543 34444443
No 92
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.35 E-value=3.2e-10 Score=107.54 Aligned_cols=191 Identities=16% Similarity=0.079 Sum_probs=148.1
Q ss_pred CCCHHHHHHHHHHH------------HHHHHh----cCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----
Q psy10061 53 KPDYDSAADDYSKA------------ATCFKG----AKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKE---- 112 (325)
Q Consensus 53 ~~~~~~A~~~y~~a------------~~~y~~----~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~---- 112 (325)
.+|++.|...|.++ |.+|.. .+++++|..+|.++++. ++ ..++.++|.+|..
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~ 127 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----GL----PQAQQNLGVMYHEGNGV 127 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSS
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCC
Confidence 36777777777765 567887 89999999999998753 33 4578889999998
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc----c-CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy10061 113 LNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEE----L-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAAR 187 (325)
Q Consensus 113 ~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~----~-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~ 187 (325)
.+++++|+.+|+++++. |+ ..++.++|.+|.. . ++++|+.+|+++++. ++ ..++..+|.
T Consensus 128 ~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~----~~a~~~Lg~ 191 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQ----GR----DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----GN----VWSCNQLGY 191 (490)
T ss_dssp CCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHH
Confidence 88999999999998753 55 3468899999986 3 399999999999874 33 367889999
Q ss_pred HHHH----cCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHhhcccCCChHHHHHHH
Q psy10061 188 MCVR----VKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLA----RGDTVAAEKAFKEWGNCCEAPEVQTLEK 259 (325)
Q Consensus 188 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~----~gd~~~A~~~~~~~~~~~~~~e~~~l~~ 259 (325)
+|.. .+++++|+.+|+++++. ++. .+++.+|.+|.. .+|+++|...|+++-... .......
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~----~~~----~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 260 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATS----GDE----LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFR 260 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT----TCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHC----CCH----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 9998 89999999999998763 332 456789999997 899999999999972111 1234556
Q ss_pred HHHHH-h----cCCHHHHHHHhcC
Q psy10061 260 LLQAF-D----EEDPEGARQALND 278 (325)
Q Consensus 260 L~~a~-~----~gd~~~~~~~~~~ 278 (325)
|+..+ . .+|.+.+....++
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~ 284 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRK 284 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHH
Confidence 66665 3 5777777777665
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.34 E-value=5e-12 Score=125.18 Aligned_cols=179 Identities=9% Similarity=-0.019 Sum_probs=137.9
Q ss_pred ccccHHHHHHHHHHHHh-hhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy10061 27 SDRKKEEGMEYVKSAEK-HLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQ 105 (325)
Q Consensus 27 ~~~~~~eA~~l~~~A~~-~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~ 105 (325)
..+++++|++.++++.. .+... ....+.-.+.+...|.+|...|++++|+..|.+++++.... ..++.+
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~----~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~ 472 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDAD----GVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR------WRLVWY 472 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-----------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC------HHHHHH
T ss_pred cccCHHHHHHHHHHhhhhccccc----ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch------HHHHHH
Confidence 34689999999999972 11110 01112334578888999999999999999999999876532 468999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHH
Q psy10061 106 AIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISR 184 (325)
Q Consensus 106 ~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~ 184 (325)
+|.+|..+|++++|+..|++|+.+.-.. ..++.++|.++...+ +++ +.+|++|+++.... ..++.+
T Consensus 473 lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~------~~a~~~ 539 (681)
T 2pzi_A 473 RAVAELLTGDYDSATKHFTEVLDTFPGE------LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV------ISAAFG 539 (681)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTC------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC------HHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch------HHHHHH
Confidence 9999999999999999999999874332 346889999999887 999 99999999875543 358899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCC
Q psy10061 185 AARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD 234 (325)
Q Consensus 185 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd 234 (325)
+|.++..+|++++|+..|++++++.+. ...++.++|.+++..++
T Consensus 540 lg~~~~~~g~~~~A~~~~~~al~l~P~------~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 540 LARARSAEGDRVGAVRTLDEVPPTSRH------FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCTTSTT------HHHHHHHHHHHTC----
T ss_pred HHHHHHHcCCHHHHHHHHHhhcccCcc------cHHHHHHHHHHHHccCC
Confidence 999999999999999999999875321 22467789999877555
No 94
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=7.6e-11 Score=95.17 Aligned_cols=156 Identities=11% Similarity=0.020 Sum_probs=128.5
Q ss_pred ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061 27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA 106 (325)
Q Consensus 27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~ 106 (325)
..+++++|++++.++.+.... + ...+..+|.++...|++++|..++.+++..... ...++..+
T Consensus 20 ~~~~~~~A~~~~~~~~~~~~~-------~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~ 82 (186)
T 3as5_A 20 KAGRYSQAVMLLEQVYDADAF-------D----VDVALHLGIAYVKTGAVDRGTELLERSLADAPD------NVKVATVL 82 (186)
T ss_dssp HHTCHHHHHHHHTTTCCTTSC-------C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCcc-------C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHH
Confidence 346899999999887654321 1 467888999999999999999999999877432 14578899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy10061 107 IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA 185 (325)
Q Consensus 107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l 185 (325)
|.+|...|++++|+.++++++.+... + ...+..+|.++...+ +++|+.++++++...... ..++..+
T Consensus 83 a~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l 150 (186)
T 3as5_A 83 GLTYVQVQKYDLAVPLLIKVAEANPI--N----FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE------GKVHRAI 150 (186)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCcH--h----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc------hHHHHHH
Confidence 99999999999999999999877332 1 357888999999887 999999999999875432 4688899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 186 ARMCVRVKEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 186 g~~~~~~g~~~~A~~~~~~al~~~~~ 211 (325)
|.++...|++++|+.++++++.+.+.
T Consensus 151 a~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 151 AFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999987654
No 95
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.32 E-value=4.4e-11 Score=103.41 Aligned_cols=186 Identities=11% Similarity=-0.054 Sum_probs=134.3
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q psy10061 72 GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLE 151 (325)
Q Consensus 72 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~ 151 (325)
..|++++|+..|.+++... ..+....+.++..+|.+|...|++++|+.++++++.+... -..++..+|.++.
T Consensus 17 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~ 88 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASR--ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLT 88 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhcc--cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHH
Confidence 3466788888888877652 1345667889999999999999999999999999987321 2347889999999
Q ss_pred ccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q psy10061 152 ELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQL 230 (325)
Q Consensus 152 ~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~ 230 (325)
..+ +++|+.+|++++++.+.. ..++..+|.+|...|++++|+.+|++++.+.+.... ....+ .++.
T Consensus 89 ~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~------~~~~~-~~~~ 155 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLELDPTY------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF------RSLWL-YLAE 155 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------HHHHH-HHHH
T ss_pred HccCHHHHHHHHHHHHhcCccc------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChH------HHHHH-HHHH
Confidence 887 999999999999986543 368889999999999999999999999986443211 11111 2224
Q ss_pred hcCCHHHHHHHHHhh-cccCC-----------------------------------ChHHHHHHHHHHHH-hcCCHHHHH
Q psy10061 231 ARGDTVAAEKAFKEW-GNCCE-----------------------------------APEVQTLEKLLQAF-DEEDPEGAR 273 (325)
Q Consensus 231 ~~gd~~~A~~~~~~~-~~~~~-----------------------------------~~e~~~l~~L~~a~-~~gd~~~~~ 273 (325)
..|++++|...+++. ..... .....+...++.++ ..|+.+.+.
T Consensus 156 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 235 (275)
T 1xnf_A 156 QKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSAT 235 (275)
T ss_dssp HHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHH
Confidence 456666666666543 10000 01135566777776 588888888
Q ss_pred HHhcC
Q psy10061 274 QALND 278 (325)
Q Consensus 274 ~~~~~ 278 (325)
..+++
T Consensus 236 ~~~~~ 240 (275)
T 1xnf_A 236 ALFKL 240 (275)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87776
No 96
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.30 E-value=4.1e-10 Score=115.96 Aligned_cols=245 Identities=13% Similarity=0.133 Sum_probs=166.6
Q ss_pred hhhhhHHHHHHhhchhc----cccccccHHHHHHHHHHHHhhhcc-c-ccCCCCCHHHHHHHHH---------HHHHHHH
Q psy10061 7 KEEGMEYVKSAEKHSLS----TMTSDRKKEEGMEYVKSAEKHLKT-S-LLKWKPDYDSAADDYS---------KAATCFK 71 (325)
Q Consensus 7 ~~~~~~~~~~ae~~~~~----~~~~~~~~~eA~~l~~~A~~~~~~-~-~~~~~~~~~~A~~~y~---------~a~~~y~ 71 (325)
++++++++.+-++.+.. .....+.|+||..+|+++...... . +..-.++|++|.+.++ +.|.++.
T Consensus 1037 ~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1037 RTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQL 1116 (1630)
T ss_pred hhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 56777777776654442 233346899999999998644432 1 1101367788777664 4588888
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------HHHcCCHHH
Q psy10061 72 GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATL-------------FLEQGNREA 138 (325)
Q Consensus 72 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~-------------~~~~g~~~~ 138 (325)
..|++++|+++|.++ ++ ...|.+++.++.+.|++++|+++|..|... |.+.++...
T Consensus 1117 ~~G~~kEAIdsYiKA-------dD----~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rlee 1185 (1630)
T 1xi4_A 1117 QKGMVKEAIDSYIKA-------DD----PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE 1185 (1630)
T ss_pred hCCCHHHHHHHHHhc-------CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHH
Confidence 999999999999775 34 346888999999999999999999887632 333344443
Q ss_pred HHH--------HHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 139 AST--------VLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH 209 (325)
Q Consensus 139 aa~--------~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 209 (325)
... .+.++|..+...+ |++|+.+|.+| ..|.+++.+|.++|++++|++.++++....
T Consensus 1186 le~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------------~ny~rLA~tLvkLge~q~AIEaarKA~n~~ 1251 (1630)
T 1xi4_A 1186 LEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANSTR 1251 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHH
Confidence 222 2556888888887 99999999885 367789999999999999999998885542
Q ss_pred H---------HcccHH----------HHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHhcCCHH
Q psy10061 210 Q---------ESEHLL----------AIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAFDEEDPE 270 (325)
Q Consensus 210 ~---------~~~~~~----------~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~~~gd~~ 270 (325)
. +.+.+. ..+..+..++..|...|.+++|+.+++..-... .....+-..|+.++..-.++
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHH
Confidence 1 000000 012245577888999999999999998862221 11122444566666556666
Q ss_pred HHHHHhc
Q psy10061 271 GARQALN 277 (325)
Q Consensus 271 ~~~~~~~ 277 (325)
...++++
T Consensus 1331 klmEhlk 1337 (1630)
T 1xi4_A 1331 KMREHLE 1337 (1630)
T ss_pred HHHHHHH
Confidence 6666655
No 97
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.29 E-value=5e-11 Score=99.51 Aligned_cols=132 Identities=11% Similarity=0.034 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhh
Q psy10061 99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQ 177 (325)
Q Consensus 99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~ 177 (325)
.+..+.++|.++...|++++|+.+|+++++ . -..++.++|.+|...+ +++|+.+|++++.+....
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-----~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----- 70 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQD-----P----HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----- 70 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS-----C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC-----C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-----
Confidence 345677888899999999999999988841 1 2457889999998887 999999999998875432
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc----------cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 178 AAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE----------HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 178 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..++.++|.+|..+|++++|+.+|++++.+.+... .......+++++|.++...|++++|..+|+++
T Consensus 71 -~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 71 -AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 46788999999999999999999999988765432 11123357788999999999999999999997
No 98
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.28 E-value=2.9e-10 Score=101.23 Aligned_cols=213 Identities=9% Similarity=-0.031 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHH-------HhcCCH-------HHHHHHHHHHHH-HHHhcCCh
Q psy10061 32 EEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCF-------KGAKSF-------QQCKEYLLKAAN-CYETNKSA 96 (325)
Q Consensus 32 ~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y-------~~~g~~-------~~A~~~~~~a~~-~~~~~~~~ 96 (325)
++|+..|++|.+.... .. +.+...|.++ ...|++ ++|...|.+|+. +...
T Consensus 33 ~~a~~~~~~al~~~p~--------~~---~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~---- 97 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH--------HP---DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK---- 97 (308)
T ss_dssp HHHHHHHHHHHHHHTT--------CH---HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT----
T ss_pred HHHHHHHHHHHHHcCC--------CH---HHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc----
Confidence 6788888888876632 22 2333444443 356886 899999999987 4332
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCCh
Q psy10061 97 YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY 175 (325)
Q Consensus 97 ~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~ 175 (325)
-..++.+.|.++...|++++|...|++++.+.. .+.. .++.++|.++...+ +++|+..|++|+++....
T Consensus 98 --~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~--- 167 (308)
T 2ond_A 98 --NMLLYFAYADYEESRMKYEKVHSIYNRLLAIED--IDPT---LVYIQYMKFARRAEGIKSGRMIFKKAREDARTR--- 167 (308)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS--SCTH---HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC---
T ss_pred --cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc--cCcc---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---
Confidence 245788999999999999999999999987522 1221 26888888887766 999999999998764322
Q ss_pred hhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cc--cCCC
Q psy10061 176 KQAAEYISRAARMCV-RVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GN--CCEA 251 (325)
Q Consensus 176 ~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~--~~~~ 251 (325)
..++...+.+.. ..|++++|+.+|++++.+.+.. ..++..++.++...|++++|...|+++ .. +...
T Consensus 168 ---~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 168 ---HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp ---THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred ---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence 234444554433 3799999999999999976432 356788999999999999999999998 43 3322
Q ss_pred hHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 252 PEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 252 ~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
....+...++... ..|+.+.+....++
T Consensus 239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 239 KSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3345566667765 58999999888776
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.27 E-value=4.3e-10 Score=94.70 Aligned_cols=172 Identities=18% Similarity=0.060 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc----
Q psy10061 78 QCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL---- 153 (325)
Q Consensus 78 ~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~---- 153 (325)
+|...|.++++. ++ +.++.++|.+|...+++++|+.+|++|++ .|+. .++.++|.+|...
T Consensus 4 eA~~~~~~aa~~----g~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~g~~----~a~~~lg~~y~~~g~~~ 67 (212)
T 3rjv_A 4 EPGSQYQQQAEA----GD----RRAQYYLADTWVSSGDYQKAEYWAQKAAA----QGDG----DALALLAQLKIRNPQQA 67 (212)
T ss_dssp CTTHHHHHHHHT----TC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----TTCH----HHHHHHHHHTTSSTTSC
T ss_pred hHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCH----HHHHHHHHHHHcCCCCC
Confidence 466777777643 44 45889999999999999999999999975 3654 4788999999886
Q ss_pred CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q psy10061 154 KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVR----VKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQ 229 (325)
Q Consensus 154 ~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~ 229 (325)
++++|+.+|++|++. ++ ..++.++|.+|.. .+++++|+.+|+++++. ++......+++++|.+|
T Consensus 68 ~~~~A~~~~~~A~~~----g~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y 135 (212)
T 3rjv_A 68 DYPQARQLAEKAVEA----GS----KSGEIVLARVLVNRQAGATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIY 135 (212)
T ss_dssp CHHHHHHHHHHHHHT----TC----HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHH
Confidence 599999999999652 32 3678899999998 89999999999998764 22112345778999999
Q ss_pred Hh----cCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHHh--cC-----CHHHHHHHhcChh
Q psy10061 230 LA----RGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAFD--EE-----DPEGARQALNDPF 280 (325)
Q Consensus 230 ~~----~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~~--~g-----d~~~~~~~~~~~~ 280 (325)
.. .+|+.+|..+|+++ .. .+.. .....|+..+. .| |.+.+....++.+
T Consensus 136 ~~g~g~~~d~~~A~~~~~~A~~~-~~~~--~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 136 ASGVHGPEDDVKASEYFKGSSSL-SRTG--YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp HHTSSSSCCHHHHHHHHHHHHHT-SCTT--HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHc-CCCH--HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 99 89999999999998 33 2222 25677888874 34 8899988887733
No 100
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.26 E-value=1.2e-09 Score=96.74 Aligned_cols=166 Identities=10% Similarity=0.098 Sum_probs=118.7
Q ss_pred CCCHHHHHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH
Q psy10061 53 KPDYDSAADDYSK----------------AATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDL 116 (325)
Q Consensus 53 ~~~~~~A~~~y~~----------------a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~ 116 (325)
.++++.|.+.+++ +|.++...|++++|+.++.+ -++ ..++..+|.+|..+|++
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~----~~~~~~l~~~~~~~g~~ 146 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDS----LECMAMTVQILLKLDRL 146 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCS----HHHHHHHHHHHHHTTCH
T ss_pred CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCC----HHHHHHHHHHHHHCCCH
Confidence 3566666666654 35677888999998888876 122 34788889999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCH
Q psy10061 117 TDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEF 195 (325)
Q Consensus 117 ~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 195 (325)
++|+..+++++.+. .+.. ......-...++...+ +++|+.+|+++++..... ..++.++|.++..+|++
T Consensus 147 ~~A~~~l~~~~~~~---p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 147 DLARKELKKMQDQD---EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT------LLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHHHHHHHHHHHHC---TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhhC---cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCH
Confidence 99999999988763 1211 1111111122333445 999999999999875432 46889999999999999
Q ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHhh
Q psy10061 196 DKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVA-AEKAFKEW 245 (325)
Q Consensus 196 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~-A~~~~~~~ 245 (325)
++|+..|++++.+.+. ...++.++|.++...|++.+ +..+++++
T Consensus 217 ~eA~~~l~~al~~~p~------~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 217 EAAEGVLQEALDKDSG------HPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp HHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999886432 12467889999999999876 56777776
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.25 E-value=5.9e-10 Score=93.48 Aligned_cols=180 Identities=13% Similarity=0.081 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHH
Q psy10061 100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGN----------REAASTVLEKGAKSLEELK-SDAALTLYSRAADV 168 (325)
Q Consensus 100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~----------~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~ 168 (325)
+..+...|..+...|++++|+.+|++++.+...... .........++|.+|...+ +++|+.+|++++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 345667788889999999999999999886332111 1111222233999999887 99999999999998
Q ss_pred HhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHhhc
Q psy10061 169 AHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD--TVAAEKAFKEWG 246 (325)
Q Consensus 169 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd--~~~A~~~~~~~~ 246 (325)
.+.. ..++..+|.+|..+|++++|+.+|++++.+.+.. ..+++++|.+|+..|+ ...+...+.+..
T Consensus 84 ~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
T 3urz_A 84 APNN------VDCLEACAEMQVCRGQEKDALRMYEKILQLEADN------LAANIFLGNYYYLTAEQEKKKLETDYKKLS 151 (208)
T ss_dssp CTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 6543 4688999999999999999999999999874321 2467889999987765 344555555542
Q ss_pred ccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcChhhhcccHHHHHHhh
Q psy10061 247 NCCEAPEVQTLEKLLQAF-DEEDPEGARQALNDPFIKHMDVEYSRLAR 293 (325)
Q Consensus 247 ~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~~~~~~l~~~~~~~~~ 293 (325)
. ..........++.++ ..|+.+.+...+++.+-...+.+..+.+.
T Consensus 152 ~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 152 S--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred C--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 1 222223344556654 57889999998887443344455444433
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.25 E-value=8.3e-11 Score=113.69 Aligned_cols=155 Identities=12% Similarity=0.069 Sum_probs=115.7
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI 107 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~ 107 (325)
++++++|+++|+++.+... + -...+..+|.+|...|++++|..+|.+++++.... ..++.++|
T Consensus 2 ~g~~~~A~~~~~~al~~~p--------~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg 64 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP--------Q---DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH------PEAVARLG 64 (568)
T ss_dssp ---------------------------C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC------HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC--------C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Confidence 4678999999999876542 2 13578899999999999999999999998765432 56899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy10061 108 MMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAA 186 (325)
Q Consensus 108 ~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg 186 (325)
.+|..+|++++|+.++++++++... + ..++.++|.+|...+ +++|+.+|++++++.... ..++.++|
T Consensus 65 ~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~ 132 (568)
T 2vsy_A 65 RVRWTQQRHAEAAVLLQQASDAAPE--H----PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE------PYITAQLL 132 (568)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Confidence 9999999999999999999987332 2 457899999999887 999999999999886532 36788999
Q ss_pred HHHHHc---CCHHHHHHHHHHHHHHHHH
Q psy10061 187 RMCVRV---KEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 187 ~~~~~~---g~~~~A~~~~~~al~~~~~ 211 (325)
.++..+ |++++|+..|+++++..+.
T Consensus 133 ~~~~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 133 NWRRRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp HHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence 999999 9999999999999987554
No 103
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.24 E-value=1.7e-10 Score=96.23 Aligned_cols=134 Identities=13% Similarity=0.056 Sum_probs=111.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy10061 63 YSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTV 142 (325)
Q Consensus 63 y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~ 142 (325)
+...|.++...|++++|+.+|.+++ .. ...++.++|.+|...|++++|+.+|++++.+... -..+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~------~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------~~~~ 73 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ------DP---HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH------LAVA 73 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS------SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc------CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------chHH
Confidence 4456888889999999999998873 11 2468999999999999999999999999987421 2457
Q ss_pred HHHHHHHHhccC-HHHHHHHHHHHHHHHhcCC----------ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 143 LEKGAKSLEELK-SDAALTLYSRAADVAHGED----------NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 143 l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~----------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 211 (325)
+.++|.+|...+ +++|+.+|++++++.+... .......++.++|.+|..+|++++|+.+|++++.+.+.
T Consensus 74 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 74 YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 899999999887 9999999999999877654 33445678999999999999999999999999887543
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.22 E-value=1.2e-10 Score=92.62 Aligned_cols=141 Identities=15% Similarity=0.076 Sum_probs=110.8
Q ss_pred ccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy10061 25 MTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLE 104 (325)
Q Consensus 25 ~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~ 104 (325)
+...+++++|+..++++.... ++-...+..+|.+|...|+|++|+.+|.+++++.... ..++.
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-----------p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~------~~a~~ 69 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-----------RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD------PKAHR 69 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-----------HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-----------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Confidence 444578999999998875533 3334455678999999999999999999999886542 56899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHH-HHHHHHHHhcCCChhhHHHHH
Q psy10061 105 QAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTL-YSRAADVAHGEDNYKQAAEYI 182 (325)
Q Consensus 105 ~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~-y~~Al~~~~~~~~~~~~~~~~ 182 (325)
++|.+|...|++++|+.+|++++++... + ..++.++|.+|...+ +++|+.. +++|+++.+.. ..++
T Consensus 70 ~lg~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~------~~~~ 137 (150)
T 4ga2_A 70 FLGLLYELEENTDKAVECYRRSVELNPT--Q----KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS------PAVY 137 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC------HHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC------HHHH
Confidence 9999999999999999999999987322 2 347899999998887 7777765 58999987653 3567
Q ss_pred HHHHHHHHHcCC
Q psy10061 183 SRAARMCVRVKE 194 (325)
Q Consensus 183 ~~lg~~~~~~g~ 194 (325)
...+.++...|+
T Consensus 138 ~l~~~ll~~~G~ 149 (150)
T 4ga2_A 138 KLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHHHhCc
Confidence 777888877764
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.22 E-value=9.8e-11 Score=115.90 Aligned_cols=187 Identities=13% Similarity=-0.002 Sum_probs=140.5
Q ss_pred HhcCCHHHHHHHHHHHHHHH-Hh-cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061 71 KGAKSFQQCKEYLLKAANCY-ET-NKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAK 148 (325)
Q Consensus 71 ~~~g~~~~A~~~~~~a~~~~-~~-~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~ 148 (325)
...|++++|++.|.++++.. .. .......+.++..+|.+|..+|++++|+..|++++++.. ++ ..++.++|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~----~~a~~~lg~ 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG--WR----WRLVWYRAV 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC--CC----HHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc--ch----HHHHHHHHH
Confidence 57899999999999987211 10 011122356889999999999999999999999997632 22 457899999
Q ss_pred HHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q psy10061 149 SLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVL 227 (325)
Q Consensus 149 ~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 227 (325)
++...+ +++|+.+|++|+++.... ..++.++|.+|..+|++++ +.+|++++++.+.. ..+++++|.
T Consensus 476 ~~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~------~~a~~~lg~ 542 (681)
T 2pzi_A 476 AELLTGDYDSATKHFTEVLDTFPGE------LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV------ISAAFGLAR 542 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTC------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC------HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch------HHHHHHHHH
Confidence 999887 999999999999987654 3578899999999999999 99999999874321 236789999
Q ss_pred HHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHH-hcCC-----HHHHHHHhc
Q psy10061 228 VQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAF-DEED-----PEGARQALN 277 (325)
Q Consensus 228 ~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~-~~gd-----~~~~~~~~~ 277 (325)
++..+|++++|+..|+++-.... ....+...++.++ ..++ .+.+.++.+
T Consensus 543 ~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~ 597 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEVPPTSR-HFTTARLTSAVTLLSGRSTSEVTEEQIRDAAR 597 (681)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTST-THHHHHHHHHHHTC-------CCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhcccCc-ccHHHHHHHHHHHHccCCCCCCCHHHHHHHHH
Confidence 99999999999999999833322 2244566677776 3333 455555554
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.22 E-value=1.5e-10 Score=111.83 Aligned_cols=149 Identities=10% Similarity=-0.062 Sum_probs=110.7
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q psy10061 73 AKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEE 152 (325)
Q Consensus 73 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~ 152 (325)
.|++++|..+|.+++++.... +.++.++|.+|...|++++|+.+|++++++... -..++.++|.+|..
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~ 69 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD------FVAWLMLADAELGMGDTTAGEMAVQRGLALHPG------HPEAVARLGRVRWT 69 (568)
T ss_dssp -------------------CC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT------CHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH
Confidence 467888888888887765432 468999999999999999999999999876322 24578999999998
Q ss_pred cC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q psy10061 153 LK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLA 231 (325)
Q Consensus 153 ~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~ 231 (325)
.+ +++|+.+|++++++.... ..++.++|.+|..+|++++|+.+|++++++.+.. ..++.+++.++..
T Consensus 70 ~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~ 137 (568)
T 2vsy_A 70 QQRHAEAAVLLQQASDAAPEH------PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE------PYITAQLLNWRRR 137 (568)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 87 999999999999985542 4688999999999999999999999999874321 2467889999999
Q ss_pred c---CCHHHHHHHHHhh
Q psy10061 232 R---GDTVAAEKAFKEW 245 (325)
Q Consensus 232 ~---gd~~~A~~~~~~~ 245 (325)
+ |++++|.+.|+++
T Consensus 138 ~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 138 LCDWRALDVLSAQVRAA 154 (568)
T ss_dssp TTCCTTHHHHHHHHHHH
T ss_pred hhccccHHHHHHHHHHH
Confidence 9 9999999999996
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.21 E-value=2.9e-10 Score=87.71 Aligned_cols=102 Identities=15% Similarity=0.035 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCCh
Q psy10061 97 YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY 175 (325)
Q Consensus 97 ~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~ 175 (325)
...+..+.+.|..|.+.|++++|+.+|++|+++... -..++.++|.+|...+ +++|+..|++++++....
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--- 80 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE------NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF--- 80 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh---
Confidence 345778888899999999999999999998876321 1457888898888887 999999999998874432
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 176 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 176 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 210 (325)
..++.++|.+|..+|++++|+..|++++++.+
T Consensus 81 ---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 81 ---IKGYIRKAACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 35788899999999999999999999988743
No 108
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.21 E-value=7.2e-10 Score=88.18 Aligned_cols=132 Identities=11% Similarity=-0.018 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChh
Q psy10061 98 HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYK 176 (325)
Q Consensus 98 ~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~ 176 (325)
..+..+..+|.++...|++++|+.++++++.+.... ..++..+|.++...+ +++|+.+|++++.+....
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---- 80 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---- 80 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----
Confidence 345667777777777777777777777777653221 346677777777666 777777777777764322
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 177 QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 177 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..++..+|.++..+|++++|+.+|++++.+.+.. .........+..+...|++++|...+.+.
T Consensus 81 --~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 81 --IKGYYRRAASNMALGKFRAALRDYETVVKVKPHD----KDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 3467778888888888888888888777654321 11223344555577777777777777764
No 109
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.20 E-value=5.6e-10 Score=89.23 Aligned_cols=114 Identities=11% Similarity=-0.013 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-----C-HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc
Q psy10061 99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQG-----N-REAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHG 171 (325)
Q Consensus 99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g-----~-~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~ 171 (325)
.+..+.+.|+.+...|+|++|+.+|++|+++-...- + ...-+.++.++|.++..++ +++|+.+|.+|+++|..
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 456677788888888888888888888888766521 1 1122347888888888777 88888888888887433
Q ss_pred CCC-hhhHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 172 EDN-YKQAAEYI----SRAARMCVRVKEFDKAADLIRQEIGYHQES 212 (325)
Q Consensus 172 ~~~-~~~~~~~~----~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 212 (325)
.+. ...-..+| .+.|.++..+|++++|+..|++++++.++-
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 221 12234566 889999999999999999999998887653
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.19 E-value=1.4e-10 Score=94.41 Aligned_cols=161 Identities=10% Similarity=0.025 Sum_probs=123.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy10061 62 DYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAAST 141 (325)
Q Consensus 62 ~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~ 141 (325)
.+...|..+...|++++|...|.+++...... ..++..+|.+|...|++++|+.++++++.... +..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~~---- 74 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSR------GDVKLAKADCLLETKQFELAQELLATIPLEYQ---DNS---- 74 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---CHH----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---ChH----
Confidence 35567888889999999999999998877643 46899999999999999999999999875532 221
Q ss_pred HHHHHHHHHh--ccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHH
Q psy10061 142 VLEKGAKSLE--ELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIG 219 (325)
Q Consensus 142 ~l~~lg~~~~--~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 219 (325)
....++.+.. ..+...|+.++++++++.+.. ..++..+|.++...|++++|+..|++++.+.+... ..
T Consensus 75 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~ 144 (176)
T 2r5s_A 75 YKSLIAKLELHQQAAESPELKRLEQELAANPDN------FELACELAVQYNQVGRDEEALELLWNILKVNLGAQ----DG 144 (176)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT----TT
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC----hH
Confidence 1222232221 122345799999999876543 36888999999999999999999999987643221 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 220 RLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 220 ~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.++..+|.++...|+.++|...|+++
T Consensus 145 ~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 145 EVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 36678999999999999999999885
No 111
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.19 E-value=1.4e-09 Score=86.48 Aligned_cols=141 Identities=16% Similarity=0.075 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Q psy10061 57 DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNR 136 (325)
Q Consensus 57 ~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~ 136 (325)
...+..+...|.++...|++++|..+|.+++.+.... ..++.++|.+|...|++++|+.++++++.+...
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---- 79 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELDKK---- 79 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----
Confidence 4567788889999999999999999999998875432 568899999999999999999999999987432
Q ss_pred HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q psy10061 137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE 213 (325)
Q Consensus 137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 213 (325)
-..++..+|.++...+ +++|+.+|++++.+..... .......++..+...|++++|+.++.+...++...+
T Consensus 80 --~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 151 (166)
T 1a17_A 80 --YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK----DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLD 151 (166)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred --cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcccc
Confidence 2457889999999887 9999999999998865431 122335566668889999999999999888776543
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.19 E-value=4.5e-10 Score=86.62 Aligned_cols=114 Identities=11% Similarity=0.019 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Q psy10061 57 DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNR 136 (325)
Q Consensus 57 ~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~ 136 (325)
++-++.+...|+.|...|+|++|+.+|.+++++.... ..++.++|.+|..+|++++|+..+++++++-.. +
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~- 80 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN------AILYSNRAACLTKLMEFQRALDDCDTCIRLDSK--F- 80 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh--h-
Confidence 4556778889999999999999999999999875432 568999999999999999999999999987221 1
Q ss_pred HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy10061 137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARM 188 (325)
Q Consensus 137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~ 188 (325)
..++.++|.++...+ +++|+.+|++++++.+.. ..++..++.+
T Consensus 81 ---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~------~~a~~~l~~~ 124 (126)
T 4gco_A 81 ---IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN------EEAREGVRNC 124 (126)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC------HHHHHHHHHh
Confidence 347999999999988 999999999999986543 2455566554
No 113
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.18 E-value=7.2e-10 Score=98.65 Aligned_cols=185 Identities=11% Similarity=0.018 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q psy10061 32 EEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCK 111 (325)
Q Consensus 32 ~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~ 111 (325)
++|...|++|.+.+. ++. ..++...+.++...|++++|...|.+++.+... +.. .++.+.+.++.
T Consensus 81 ~~A~~~~~rAl~~~~-------p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~---~~~~~~~~~~~ 145 (308)
T 2ond_A 81 DEAANIYERAISTLL-------KKN---MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI--DPT---LVYIQYMKFAR 145 (308)
T ss_dssp HHHHHHHHHHHTTTT-------TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS--CTH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-------ccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc--Ccc---HHHHHHHHHHH
Confidence 889999999888432 222 356778899999999999999999999875432 211 27889999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-ccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Q psy10061 112 ELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLE-ELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMC 189 (325)
Q Consensus 112 ~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~-~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~ 189 (325)
+.|++++|+..|++|+.+... + ...+...+.+.. ..+ +++|+.+|++++++.... ..++..+|.++
T Consensus 146 ~~~~~~~A~~~~~~a~~~~p~--~----~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~ 213 (308)
T 2ond_A 146 RAEGIKSGRMIFKKAREDART--R----HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI------PEYVLAYIDYL 213 (308)
T ss_dssp HHHCHHHHHHHHHHHHTSTTC--C----THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHH
Confidence 999999999999999865321 1 233444444432 244 999999999999987643 46788999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 190 VRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 190 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..+|++++|+.+|++++.... + .+.....++...+..+...|+++.|...++++
T Consensus 214 ~~~g~~~~A~~~~~~al~~~~-l-~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 214 SHLNEDNNTRVLFERVLTSGS-L-PPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HTTCCHHHHHHHHHHHHHSSS-S-CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhccC-C-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999987410 0 11112346777888899999999999999997
No 114
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.17 E-value=1.5e-09 Score=82.48 Aligned_cols=130 Identities=13% Similarity=0.142 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10061 61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAAS 140 (325)
Q Consensus 61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa 140 (325)
+.+..+|.++...|++++|...|.+++..... + ..++..++.++...|++++|+.++++++..... + .
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~----~ 69 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--S----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--S----A 69 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--C----H
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc--c----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC--c----h
Confidence 34566777777888888888888877665321 1 346677788888888888888888887765221 1 2
Q ss_pred HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 141 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 208 (325)
Q Consensus 141 ~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 208 (325)
..+..+|.++...+ +++|+.++++++...... ..++..+|.++...|++++|+.++++++.+
T Consensus 70 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 70 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 35667777777666 888888888777664322 246667778888888888888887777654
No 115
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.17 E-value=7.4e-10 Score=103.47 Aligned_cols=116 Identities=11% Similarity=0.071 Sum_probs=101.4
Q ss_pred ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN--KSAYHAAKHLEQA 106 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~~~~ 106 (325)
++|++|+.+++++++...+.+ +++....+..++.++.+|..+|+|++|..++++++.++++. .++...+..++++
T Consensus 312 g~~~eA~~~~~~~L~i~~~~l---g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVF---EDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTB---CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCcc---ChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 589999999999999887754 68889999999999999999999999999999999999975 4678899999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHH
Q psy10061 107 IMMCKELNDLTDVENLAKQAATLFLEQ-G-NREAASTVLEKGA 147 (325)
Q Consensus 107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~-g-~~~~aa~~l~~lg 147 (325)
|.+|..+|++++|+.+|++|++++... | +....+....+|.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 999999999999999999999999875 4 3445555555443
No 116
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.17 E-value=1.4e-09 Score=83.11 Aligned_cols=102 Identities=15% Similarity=0.055 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhh
Q psy10061 99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQ 177 (325)
Q Consensus 99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~ 177 (325)
.+..+.+.|.++...|++++|+.+|++++.+... + ..++.++|.++...+ +++|+.+|++++.+....
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----- 71 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE--D----ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF----- 71 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--C----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-----
Confidence 3567788888888888888888888888876322 1 357888888888777 888888888888875432
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 178 AAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES 212 (325)
Q Consensus 178 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 212 (325)
..++..+|.++..+|++++|+..|++++.+.+..
T Consensus 72 -~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 105 (126)
T 3upv_A 72 -VRAYIRKATAQIAVKEYASALETLDAARTKDAEV 105 (126)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCccc
Confidence 3577888888888888888888888888876543
No 117
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.17 E-value=9.9e-10 Score=83.46 Aligned_cols=127 Identities=13% Similarity=0.081 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHH
Q psy10061 101 KHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAA 179 (325)
Q Consensus 101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~ 179 (325)
.++..+|.+|...|++++|+.++++++.... .+ ...+..+|.++...+ +++|+.++++++...... .
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~ 69 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP--RS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------A 69 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------H
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCC--cc----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc------h
Confidence 4678899999999999999999999987532 12 346788899988776 999999999999875432 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.++..+|.++...|++++|+.++++++...+.. ...+..+|.++...|++++|...|+++
T Consensus 70 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 70 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 577889999999999999999999998763321 245678999999999999999999986
No 118
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.16 E-value=1.1e-09 Score=99.04 Aligned_cols=142 Identities=10% Similarity=-0.000 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061 57 DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKS---------AYHAAKHLEQAIMMCKELNDLTDVENLAKQAA 127 (325)
Q Consensus 57 ~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~ 127 (325)
...+..+...|.++...|++++|+.+|.+++.+.....+ ....+.++.++|.+|..+|++++|+.+|++++
T Consensus 144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345678888999999999999999999999998875431 12236789999999999999999999999998
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHH-HHHHHHH
Q psy10061 128 TLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKA-ADLIRQE 205 (325)
Q Consensus 128 ~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A-~~~~~~a 205 (325)
.+... -..++.++|.+|...+ +++|+.+|++++++.... ..++..++.++..+|++++| ...|+++
T Consensus 224 ~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 224 ELDSN------NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN------KAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87322 2457889999999887 999999999999886543 35788899999999999988 5567777
Q ss_pred HHHHH
Q psy10061 206 IGYHQ 210 (325)
Q Consensus 206 l~~~~ 210 (325)
+....
T Consensus 292 ~~~~~ 296 (336)
T 1p5q_A 292 FERLA 296 (336)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 66543
No 119
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.15 E-value=6.8e-10 Score=88.61 Aligned_cols=103 Identities=12% Similarity=0.012 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCC
Q psy10061 96 AYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDN 174 (325)
Q Consensus 96 ~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~ 174 (325)
...-..++.++|.++..+|++++|+.+|++++.+-.. + ..++.++|.+|...+ +++|+.+|++++.+.+..
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~--~----~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~-- 103 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY--N----VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND-- 103 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC--
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC--
Confidence 3445667888889999999999999999988876321 2 346888888888887 999999999998887653
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 175 YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 175 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 210 (325)
..++.++|.+|..+|++++|+..|++++.+.+
T Consensus 104 ----~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 104 ----YTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp ----CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ----cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 25778899999999999999999999888753
No 120
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.15 E-value=4.7e-10 Score=99.05 Aligned_cols=163 Identities=11% Similarity=0.020 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10061 61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAAS 140 (325)
Q Consensus 61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa 140 (325)
+.+...|..+...|++++|...|.+++...... ..++..+|.+|...|++++|+.++++++.... +. .
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p---~~---~ 185 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ---DT---R 185 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC---SH---H
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc---ch---H
Confidence 345567788889999999999999988776542 45788899999999999999999998865422 22 1
Q ss_pred HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHH
Q psy10061 141 TVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIG 219 (325)
Q Consensus 141 ~~l~~lg~~~~~~-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 219 (325)
.....++..+... +.++|+..|++++...... ..++.++|.++...|++++|+..|++++...+... ..
T Consensus 186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~------~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~----~~ 255 (287)
T 3qou_A 186 YQGLVAQIELLXQAADTPEIQQLQQQVAENPED------AALATQLALQLHQVGRNEEALELLFGHLRXDLTAA----DG 255 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG----GG
T ss_pred HHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc----cc
Confidence 2333444444444 3778899999998876543 35788999999999999999999999988643321 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 220 RLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 220 ~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.++.+++.++...|+.+.|...|++.
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 46678899999999999999888875
No 121
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.15 E-value=1.2e-09 Score=87.12 Aligned_cols=97 Identities=14% Similarity=0.073 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH
Q psy10061 137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL 215 (325)
Q Consensus 137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 215 (325)
..-...+..+|.++...+ +++|+.+|++++.+.+.. ..++.++|.+|..+|+|++|+..|++++.+.+..
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~--- 103 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN------VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND--- 103 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC---
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC---
Confidence 445667889999998887 999999999999986543 4688999999999999999999999999975432
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 216 LAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 216 ~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..+++++|.+|..+|++++|+.+|+++
T Consensus 104 ---~~~~~~lg~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 104 ---YTPVFHTGQCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp ---CHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---cHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 246789999999999999999999998
No 122
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.15 E-value=1.3e-09 Score=87.00 Aligned_cols=114 Identities=14% Similarity=0.070 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN------KSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ 133 (325)
Q Consensus 60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~------~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~ 133 (325)
+..+...|+.+...|+|++|+.+|.+++++.... .....-+.+|.+.|.++..+|++++|+.+|++|+++|...
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 4455667888889999999999999999998762 1112345599999999999999999999999999986655
Q ss_pred CCH-HHHHHHH----HHHHHHHhccC-HHHHHHHHHHHHHHHhcCC
Q psy10061 134 GNR-EAASTVL----EKGAKSLEELK-SDAALTLYSRAADVAHGED 173 (325)
Q Consensus 134 g~~-~~aa~~l----~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~ 173 (325)
+.. ..-+.+| .+.|.++...+ +++|+.+|++|+++.....
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 431 1234456 99999999998 9999999999999988764
No 123
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.14 E-value=5.8e-10 Score=100.85 Aligned_cols=156 Identities=13% Similarity=0.089 Sum_probs=122.1
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHH
Q psy10061 72 GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGN---------REAASTV 142 (325)
Q Consensus 72 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~---------~~~aa~~ 142 (325)
.++++++|...|.++.... ...+.++.++|.+|...|++++|+.+|++|+.+.....+ ....+.+
T Consensus 125 ~L~~~~~A~~~~~~a~~~~------p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~ 198 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEK------LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLAS 198 (336)
T ss_dssp EEEEEECCCCGGGCCHHHH------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHH------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHH
Confidence 3455666666666655432 345778999999999999999999999999998765531 1222578
Q ss_pred HHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHH
Q psy10061 143 LEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRL 221 (325)
Q Consensus 143 l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 221 (325)
+.++|.+|...+ +++|+.+|++++++.... ..++.++|.+|..+|++++|+..|++++.+.+.. ..+
T Consensus 199 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~a 266 (336)
T 1p5q_A 199 HLNLAMCHLKLQAFSAAIESCNKALELDSNN------EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN------KAA 266 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC------HHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------HHH
Confidence 999999999887 999999999999986542 4688999999999999999999999999874321 236
Q ss_pred HHHHHHHHHhcCCHHHHH-HHHHhh
Q psy10061 222 AVALVLVQLARGDTVAAE-KAFKEW 245 (325)
Q Consensus 222 ~~~lg~~~~~~gd~~~A~-~~~~~~ 245 (325)
+..++.++...|++.+|. ..|++.
T Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 267 KTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999884 445543
No 124
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.13 E-value=1.8e-09 Score=101.62 Aligned_cols=171 Identities=13% Similarity=0.017 Sum_probs=129.0
Q ss_pred cHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy10061 30 KKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGA----KSFQQCKEYLLKAANCYETNKSAYHAAKHLEQ 105 (325)
Q Consensus 30 ~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~----g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~ 105 (325)
++++|+++|++|...-.. -+..+..+|.+|... +++++|..+|.+++ .++ ..++.+
T Consensus 194 ~~~~A~~~~~~aa~~g~~-----------~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~----~~a~~~ 253 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTV-----------TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGY----PASWVS 253 (452)
T ss_dssp HHHHHHHHHHHHHHTTCS-----------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGS----THHHHH
T ss_pred cHHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCC----HHHHHH
Confidence 667777777766543211 112235667777655 79999999999986 223 457889
Q ss_pred HHHH-H--HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHHHHHhcCCChhh
Q psy10061 106 AIMM-C--KELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL-----KSDAALTLYSRAADVAHGEDNYKQ 177 (325)
Q Consensus 106 ~~~~-y--~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~-----~~~~A~~~y~~Al~~~~~~~~~~~ 177 (325)
+|.+ | ...+++++|+.+|++|+ +.|+. .++.++|.+|... ++++|+.+|++|+ .++
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa----~~g~~----~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-----~g~--- 317 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGR----AADQP----RAELLLGKLYYEGKWVPADAKAAEAHFEKAV-----GRE--- 317 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHH----HTTCH----HHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-----TTC---
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHH----HCCCH----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-----CCC---
Confidence 9998 4 56789999999999987 34553 4788999999865 5999999999998 233
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHhh
Q psy10061 178 AAEYISRAARMCVR----VKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLA----RGDTVAAEKAFKEW 245 (325)
Q Consensus 178 ~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~----~gd~~~A~~~~~~~ 245 (325)
..++.++|.+|.. ..++++|+.+|+++.+. ++. .+.+++|.+|.. ..|+.+|...|+++
T Consensus 318 -~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----g~~----~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 318 -VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN----GQN----SADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp -HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT----TCT----THHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh----ChH----HHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 3678899999887 44999999999998762 332 356789999985 56999999999998
No 125
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.12 E-value=1.4e-09 Score=87.14 Aligned_cols=107 Identities=11% Similarity=0.023 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHhccC-HHHHHHHHH
Q psy10061 97 YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGN------------REAASTVLEKGAKSLEELK-SDAALTLYS 163 (325)
Q Consensus 97 ~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~------------~~~aa~~l~~lg~~~~~~~-~~~A~~~y~ 163 (325)
...+..+.+.|..+...|++++|+.+|++++.+...... ...-+.++.++|.+|...+ +++|+.+++
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 345778888899999999999999999999888654321 2233456666777766665 777777777
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 164 RAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH 209 (325)
Q Consensus 164 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 209 (325)
+++.+.... ..++..+|.+|..+|+|++|+..|++++.+.
T Consensus 88 ~al~~~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 88 EVLKREETN------EKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCCcc------hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 777663221 3466677777777777777777777776653
No 126
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.09 E-value=2.4e-09 Score=100.02 Aligned_cols=121 Identities=7% Similarity=-0.081 Sum_probs=106.4
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN--KSAYHAAKHLEQ 105 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~~~ 105 (325)
.++|++|++++++++....+.+ +++...-+..++.++.+|..+|+|++|..++.+++.++++. .++...+..+.+
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~l---g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERL---PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCC---CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcC---CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 3589999999999998877643 58889999999999999999999999999999999999875 467889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHh
Q psy10061 106 AIMMCKELNDLTDVENLAKQAATLFLEQ-G-NREAASTVLEKGAKSLE 151 (325)
Q Consensus 106 ~~~~y~~~g~~~eA~~~~~~A~~~~~~~-g-~~~~aa~~l~~lg~~~~ 151 (325)
+|.+|..+|++++|+.+|++|++++... | +....+..+.+++.+..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999876 4 46677777788877654
No 127
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.07 E-value=5e-09 Score=98.56 Aligned_cols=26 Identities=0% Similarity=0.003 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHH
Q psy10061 102 HLEQAIMMCKELN---DLTDVENLAKQAA 127 (325)
Q Consensus 102 ~~~~~~~~y~~~g---~~~eA~~~~~~A~ 127 (325)
++.++|.+|...| ++++|+.+|++++
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa 206 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGV 206 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence 5566666666666 6666666666664
No 128
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.07 E-value=1.8e-08 Score=103.92 Aligned_cols=196 Identities=14% Similarity=0.084 Sum_probs=129.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 54 PDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ 133 (325)
Q Consensus 54 ~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~ 133 (325)
+.|++|..+|++++......+.+-++...+.+|.+...+... ..++.++|.++...|++.+|+++|.+|
T Consensus 1063 glyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~----p~vWsqLAKAql~~G~~kEAIdsYiKA------- 1131 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNE----PAVWSQLAKAQLQKGMVKEAIDSYIKA------- 1131 (1630)
T ss_pred CCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCHHHHHHHHHhc-------
Confidence 677777777777642222222233333344445555555544 457889999999999999999999876
Q ss_pred CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc-------------CCChhhH--------HHHHHHHHHHHHH
Q psy10061 134 GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHG-------------EDNYKQA--------AEYISRAARMCVR 191 (325)
Q Consensus 134 g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~-------------~~~~~~~--------~~~~~~lg~~~~~ 191 (325)
+++. .+.+++.++...+ +++|+++|+.|....+. .+..... ...+.++|..+..
T Consensus 1132 dD~s----ay~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~ 1207 (1630)
T 1xi4_A 1132 DDPS----SYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYD 1207 (1630)
T ss_pred CChH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 4433 5667788888777 88888888776643311 1111100 1245679999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh---cc-------cCCChH--------
Q psy10061 192 VKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW---GN-------CCEAPE-------- 253 (325)
Q Consensus 192 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~---~~-------~~~~~e-------- 253 (325)
.|+|++|+.+|.++ ..|..++.++...|+++.|.+.++++ .. +....|
T Consensus 1208 eg~YeeA~~~Y~kA--------------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1208 EKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred cCCHHHHHHHHHhh--------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999875 25678999999999999999999986 11 001111
Q ss_pred ------HHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 254 ------VQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 254 ------~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
...+..++..+ ..|..+.+...+.+
T Consensus 1274 l~Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1274 LHIVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred HhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12344556666 47888887777755
No 129
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.06 E-value=4.5e-09 Score=98.13 Aligned_cols=115 Identities=12% Similarity=0.037 Sum_probs=83.0
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHH
Q psy10061 71 KGAKSFQQCKEYLLKAANCYETN--KSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ-G-NREAASTVLEKG 146 (325)
Q Consensus 71 ~~~g~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~-g-~~~~aa~~l~~l 146 (325)
...|+|++|...|++++++..+. .++...+.++.++|.+|..+|+|++|+.+++++++++++. | +....+..++++
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 34577888888888888887764 3456778888888888888888888888888888887764 3 466777778888
Q ss_pred HHHHhccC-HHHHHHHHHHHHHHHhcC-C-ChhhHHHHHHHH
Q psy10061 147 AKSLEELK-SDAALTLYSRAADVAHGE-D-NYKQAAEYISRA 185 (325)
Q Consensus 147 g~~~~~~~-~~~A~~~y~~Al~~~~~~-~-~~~~~~~~~~~l 185 (325)
|.+|..++ +++|+.+|++|+++.... | ++....++..+|
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI 430 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 88887776 888888888888777653 3 334444444433
No 130
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.05 E-value=3.7e-09 Score=98.75 Aligned_cols=135 Identities=12% Similarity=0.036 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-
Q psy10061 57 DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN--KSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ- 133 (325)
Q Consensus 57 ~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~- 133 (325)
..+.+....+. -+...|+|++|...+++++++..+. .++...+.++.+++.+|..+|+|++|+.++++++.++++.
T Consensus 285 ~~~~~ll~~ie-~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~l 363 (429)
T 3qwp_A 285 KEVQESLKKIE-ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF 363 (429)
T ss_dssp HHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHH-HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHc
Confidence 33444444433 3456789999999999998887654 3566788999999999999999999999999999998875
Q ss_pred -CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC-C-ChhhHHHHHHHHHHHHHHc
Q psy10061 134 -GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE-D-NYKQAAEYISRAARMCVRV 192 (325)
Q Consensus 134 -g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~-~-~~~~~~~~~~~lg~~~~~~ 192 (325)
.+....+..++++|.+|...+ +++|+.+|++|++++... | ++....+++.+++.+...+
T Consensus 364 g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 364 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 456777888888888888887 888888888888888764 3 4566667777777776544
No 131
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.04 E-value=6.1e-09 Score=83.45 Aligned_cols=105 Identities=12% Similarity=0.050 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCC
Q psy10061 96 AYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDN 174 (325)
Q Consensus 96 ~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~ 174 (325)
....+..+..+|.+|...|++++|+.+|++++.+.... ..++.++|.+|...+ +++|+.+|++++.+....
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-- 78 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN------PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-- 78 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--
Confidence 34456778888888888888888888888887764321 446778888888776 888888888888775432
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 175 YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES 212 (325)
Q Consensus 175 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 212 (325)
..++..+|.+|..+|++++|+.+|++++.+.+..
T Consensus 79 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 79 ----SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred ----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 3577788888888888888888888888876543
No 132
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.04 E-value=2e-09 Score=89.14 Aligned_cols=130 Identities=8% Similarity=0.046 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH----------HHHHHHHHHHHHhccC-HHHHHHHHHHHH
Q psy10061 98 HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREA----------ASTVLEKGAKSLEELK-SDAALTLYSRAA 166 (325)
Q Consensus 98 ~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~----------aa~~l~~lg~~~~~~~-~~~A~~~y~~Al 166 (325)
..+..+.++|.++...|++++|+.+|++++.+.....++.. ...++.++|.++...+ +++|+.++++++
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45667777888888888888888888888776544332111 1467888888888776 888888888888
Q ss_pred HHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy10061 167 DVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAE 239 (325)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~ 239 (325)
.+.... ..++..+|.+|..+|++++|+.+|++++.+.+.. ..++..++.++...++..++.
T Consensus 116 ~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 116 KIDKNN------VKALYKLGVANMYFGFLEEAKENLYKAASLNPNN------LDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHSTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHHHHHC--
T ss_pred HhCccc------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHHHHHHHH
Confidence 874322 3577888999999999999999998888764321 234566777777777666655
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.03 E-value=7.2e-09 Score=79.03 Aligned_cols=120 Identities=10% Similarity=-0.012 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Q psy10061 59 AADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREA 138 (325)
Q Consensus 59 A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~ 138 (325)
-++.+...|..+...|++++|+.+|.+++.+.... ..++.++|.+|..+|++++|+.++++++.+...
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------ 70 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN------ 70 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------
Confidence 35667788999999999999999999999876432 468999999999999999999999999987322
Q ss_pred HHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH
Q psy10061 139 ASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCV 190 (325)
Q Consensus 139 aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~ 190 (325)
-..++..+|.++...+ +++|+.+|++++++.+...+......++..++.+..
T Consensus 71 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 71 FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 1457899999999888 999999999999998543332333445555655543
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.02 E-value=8.1e-09 Score=78.09 Aligned_cols=122 Identities=11% Similarity=0.090 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCC
Q psy10061 96 AYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDN 174 (325)
Q Consensus 96 ~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~ 174 (325)
....+..+..+|.++...|++++|+.++++++..... + ..++..+|.++...+ +++|+.++++++.+....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-- 79 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA--N----AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY-- 79 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--C----HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC--
Confidence 3455677888888888889999999999888876322 1 446788888888776 999999999998874332
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCH
Q psy10061 175 YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDT 235 (325)
Q Consensus 175 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~ 235 (325)
..++..+|.++...|++++|+.+|++++.+.+.. ..++..++.++...|++
T Consensus 80 ----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 80 ----SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN------ETYKSNLKIAELKLREA 130 (131)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHTTC
T ss_pred ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc------hHHHHHHHHHHHHHhcC
Confidence 3577889999999999999999999988764321 23556788888887764
No 135
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.02 E-value=1.2e-08 Score=77.31 Aligned_cols=104 Identities=15% Similarity=0.144 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC-CChh
Q psy10061 99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE-DNYK 176 (325)
Q Consensus 99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~-~~~~ 176 (325)
.+..+..+|.++...|++++|+.++++++..... + ..++..+|.++...+ +++|+.+|++++.+.... .+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT--N----MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--c----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence 3566777888888888888888888888765321 1 346777788777666 888888888888877654 3334
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 177 QAAEYISRAARMCVRVKEFDKAADLIRQEIGY 208 (325)
Q Consensus 177 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 208 (325)
....++..+|.+|...|++++|+.+|++++.+
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44567888888888888888888888888775
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.02 E-value=5.7e-09 Score=79.50 Aligned_cols=119 Identities=13% Similarity=0.091 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChh
Q psy10061 98 HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYK 176 (325)
Q Consensus 98 ~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~ 176 (325)
....++..+|.++...|++++|+.++++++.+... + ..++..+|.++...+ +++|+.++++++.+....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---- 83 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK--D----AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF---- 83 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT--C----HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC----
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--c----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc----
Confidence 34567888888888888888888888888765321 1 457888888888776 999999999998875432
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCC
Q psy10061 177 QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD 234 (325)
Q Consensus 177 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd 234 (325)
..++..+|.++...|++++|+.+|++++.+.+.. ..++..++.++..+|+
T Consensus 84 --~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 84 --IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC------KEAADGYQRCMMAQYN 133 (133)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG------THHHHHHHHHHHHHTC
T ss_pred --hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcC
Confidence 3578889999999999999999999988764321 1355667888777664
No 137
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.00 E-value=6.4e-09 Score=97.99 Aligned_cols=152 Identities=10% Similarity=0.054 Sum_probs=113.9
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHH
Q psy10061 73 AKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGN---------REAASTVL 143 (325)
Q Consensus 73 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~---------~~~aa~~l 143 (325)
++++++|...|..+.... ...+..+.+.|.+|...|++++|+.+|++|+.+...... ....+.++
T Consensus 247 l~~~~~A~~~~~~~~~~~------~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEK------LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF 320 (457)
T ss_dssp EEEEECCCCGGGSCHHHH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHH------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHH
Confidence 344555555555444332 345678888999999999999999999999988655421 12235788
Q ss_pred HHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHH
Q psy10061 144 EKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLA 222 (325)
Q Consensus 144 ~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 222 (325)
.++|.+|...+ +++|+.+|++++++.... ..++.++|.+|..+|+|++|+..|++++.+.+.. ..++
T Consensus 321 ~nla~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~------~~a~ 388 (457)
T 1kt0_A 321 LNLAMCYLKLREYTKAVECCDKALGLDSAN------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN------KAAR 388 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------CHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHH
Confidence 89999999887 999999999999886542 4688899999999999999999999998864322 2356
Q ss_pred HHHHHHHHhcCCHHHHHHHH
Q psy10061 223 VALVLVQLARGDTVAAEKAF 242 (325)
Q Consensus 223 ~~lg~~~~~~gd~~~A~~~~ 242 (325)
..++.++...|++.+|....
T Consensus 389 ~~l~~~~~~~~~~~~a~~~~ 408 (457)
T 1kt0_A 389 LQISMCQKKAKEHNERDRRI 408 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78899999999888877543
No 138
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.00 E-value=6.7e-09 Score=83.06 Aligned_cols=108 Identities=10% Similarity=-0.016 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10061 58 SAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKS------------AYHAAKHLEQAIMMCKELNDLTDVENLAKQ 125 (325)
Q Consensus 58 ~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~------------~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~ 125 (325)
..+..+...|+.+...|+|++|+.+|.+++.+...... ....+.++.++|.+|..+|++++|+.++++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45677888899999999999999999999988654311 334567999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc
Q psy10061 126 AATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHG 171 (325)
Q Consensus 126 A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~ 171 (325)
++.+-. .-+.++..+|.+|...+ +++|+.+|++++.+.+.
T Consensus 89 al~~~p------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 89 VLKREE------TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHHST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHhcCC------cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 998722 12457999999999988 99999999999998654
No 139
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.99 E-value=8.3e-09 Score=82.66 Aligned_cols=99 Identities=19% Similarity=0.191 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q psy10061 135 NREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE 213 (325)
Q Consensus 135 ~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 213 (325)
+....+..+..+|.++...+ +++|+.+|++++++.... ..++.++|.+|..+|+|++|+.+|++++.+.+..
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~- 78 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN------PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY- 78 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-
Confidence 34456778999999999887 999999999999986543 4688999999999999999999999999874321
Q ss_pred cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 214 HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 214 ~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..+++++|.+|..+|++++|..+|+++
T Consensus 79 -----~~~~~~lg~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 79 -----SKAWSRLGLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 357789999999999999999999997
No 140
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.98 E-value=2.6e-08 Score=95.22 Aligned_cols=215 Identities=9% Similarity=-0.007 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHH-HHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10061 61 DDYSKAATCFKG-------AKSFQ-------QCKEYLLKAAN-CYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQ 125 (325)
Q Consensus 61 ~~y~~a~~~y~~-------~g~~~-------~A~~~~~~a~~-~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~ 125 (325)
+++...+.++.. .|+++ +|...|.+++. +.. .-...+...+.++...|++++|...|++
T Consensus 273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p------~~~~l~~~~~~~~~~~g~~~~A~~~~~~ 346 (530)
T 2ooe_A 273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK------KNMLLYFAYADYEESRMKYEKVHSIYNR 346 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS------SCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 344455555554 78887 88888888875 322 1256788899999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH-HHHcCCHHHHHHHHH
Q psy10061 126 AATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARM-CVRVKEFDKAADLIR 203 (325)
Q Consensus 126 A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~-~~~~g~~~~A~~~~~ 203 (325)
++.+.. .++ ..++...+.++...+ +++|...|++|++..... ...+...+.+ +...|++++|..+|+
T Consensus 347 al~~~p--~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~------~~~~~~~a~~~~~~~~~~~~A~~~~e 415 (530)
T 2ooe_A 347 LLAIED--IDP---TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR------HHVYVTAALMEYYCSKDKSVAFKIFE 415 (530)
T ss_dssp HHHSSS--SCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC------THHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HhCccc--cCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc------hHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 987511 121 247888888887766 999999999998753321 1233344433 446899999999999
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCC--hHHHHHHHHHHHH-hcCCHHHHHHHhcC-
Q psy10061 204 QEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEA--PEVQTLEKLLQAF-DEEDPEGARQALND- 278 (325)
Q Consensus 204 ~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~--~e~~~l~~L~~a~-~~gd~~~~~~~~~~- 278 (325)
+++...+.. ..++..++.++...|++++|...|+++ ...... ....+....++.. ..||.+.+..+.++
T Consensus 416 ~al~~~p~~------~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 416 LGLKKYGDI------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHTTC------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHCCCC------HHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999876432 246678899999999999999999998 332212 2233555555554 57999999988776
Q ss_pred -hhhh--cccHHHHHHhhcCCCC
Q psy10061 279 -PFIK--HMDVEYSRLARDLPLP 298 (325)
Q Consensus 279 -~~~~--~l~~~~~~~~~~l~~~ 298 (325)
..+. .-+.++..++.+.++-
T Consensus 490 ~~~~p~~~~~~~~~~~~~r~~~~ 512 (530)
T 2ooe_A 490 FTAFREEYEGKETALLVDRYKFM 512 (530)
T ss_dssp HHHTHHHHTTCHHHHHGGGTCBT
T ss_pred HHHCchhccCchHHHHHHHHHhc
Confidence 2221 0022345566665543
No 141
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.98 E-value=4.1e-09 Score=87.25 Aligned_cols=131 Identities=11% Similarity=-0.026 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChH----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061 57 DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAY----------HAAKHLEQAIMMCKELNDLTDVENLAKQA 126 (325)
Q Consensus 57 ~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~----------~aa~~~~~~~~~y~~~g~~~eA~~~~~~A 126 (325)
...+..+...|.++...|+|++|+.+|.+++.+.....+.. ....++.++|.+|..+|++++|+.+++++
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44567788889999999999999999999988765543211 12578999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHH
Q psy10061 127 ATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAA 199 (325)
Q Consensus 127 ~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 199 (325)
+.+.. .-..++..+|.+|...+ +++|+.+|++++.+.... ..++..++.++..++++.++.
T Consensus 115 l~~~p------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 115 LKIDK------NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN------LDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHST------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHHHHHC--
T ss_pred HHhCc------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHHHHHHHH
Confidence 98732 12457899999999887 999999999999886543 357788999999888888776
No 142
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.98 E-value=4.5e-08 Score=73.98 Aligned_cols=101 Identities=16% Similarity=0.184 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-ccHH
Q psy10061 139 ASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLL 216 (325)
Q Consensus 139 aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~ 216 (325)
.+..+..+|.++...+ +++|+.+|++++.+.... ..++..+|.++...|++++|+.+|++++.+.+.. ....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence 4667889999998887 999999999999875432 4678899999999999999999999999988764 3344
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 217 AIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 217 ~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
....++..+|.++...|++++|..+|+++
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 44678899999999999999999999998
No 143
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.97 E-value=8e-09 Score=94.68 Aligned_cols=130 Identities=12% Similarity=0.041 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHH
Q psy10061 99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQG----------NREAASTVLEKGAKSLEELK-SDAALTLYSRAAD 167 (325)
Q Consensus 99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g----------~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~ 167 (325)
.+..+.++|.++...|++++|+.+|++|+.+..... .....+.++.++|.+|...+ +++|+.+|+++++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 455677888888888888888888888888765431 33445667888888888776 8888888888887
Q ss_pred HHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy10061 168 VAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEK 240 (325)
Q Consensus 168 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~ 240 (325)
+... ...++..+|.+|..+|++++|+..|++++.+.+.. ..++..++.++...+++.++..
T Consensus 302 ~~p~------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~------~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 IDPS------NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED------KAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCch------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHH
Confidence 5432 14577788888888888888888888888764321 1244566777777666666543
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.96 E-value=5.4e-09 Score=82.84 Aligned_cols=93 Identities=12% Similarity=0.021 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHH
Q psy10061 141 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIG 219 (325)
Q Consensus 141 ~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 219 (325)
..+..+|.++...+ +++|+.+|++++.+.... ..++..+|.++..+|+|++|+..|++++.+.+.. .
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~ 89 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD------SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE------P 89 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------T
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC------c
Confidence 34444555554444 555555555555443221 2344555555555555555555555555542211 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 220 RLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 220 ~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.+++++|.++...|++++|...|+++
T Consensus 90 ~~~~~lg~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 90 RFPFHAAECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 23445555555555555555555554
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.95 E-value=2.8e-08 Score=78.62 Aligned_cols=104 Identities=13% Similarity=0.049 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCCh
Q psy10061 97 YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY 175 (325)
Q Consensus 97 ~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~ 175 (325)
......+.++|.++...|++++|+.+|++++.+... + ..++..+|.++...+ +++|+.+|++++.+.+..
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--- 88 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY--D----SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE--- 88 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc--c----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---
Confidence 445678889999999999999999999999876322 2 446889999999887 999999999999986543
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 176 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES 212 (325)
Q Consensus 176 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 212 (325)
..++.++|.+|..+|++++|+.+|++++.+.+..
T Consensus 89 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 89 ---PRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp ---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred ---chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 2578899999999999999999999999987653
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.95 E-value=3.1e-08 Score=74.75 Aligned_cols=124 Identities=14% Similarity=0.140 Sum_probs=102.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 54 PDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ 133 (325)
Q Consensus 54 ~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~ 133 (325)
.....-...+...|.++...|++++|..+|.+++...... ..++..+|.+|...|++++|+.++++++.+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~- 78 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN------AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA- 78 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-
Confidence 3445667888899999999999999999999998875422 568899999999999999999999999986322
Q ss_pred CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCH
Q psy10061 134 GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEF 195 (325)
Q Consensus 134 g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 195 (325)
+ ...+..+|.++...+ +++|+.+|++++.+.... ..++..+|.++..+|++
T Consensus 79 -~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 79 -Y----SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN------ETYKSNLKIAELKLREA 130 (131)
T ss_dssp -C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHTTC
T ss_pred -C----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc------hHHHHHHHHHHHHHhcC
Confidence 1 457899999999887 999999999999885432 35778899999988875
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.94 E-value=3.7e-08 Score=77.01 Aligned_cols=104 Identities=13% Similarity=0.061 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCCh
Q psy10061 97 YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY 175 (325)
Q Consensus 97 ~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~ 175 (325)
......+.++|.++...|++++|+.+|++++.+... + ..++..+|.++...+ +++|+.+|++++.+.+..
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--- 85 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY--D----ARYFLGLGACRQSLGLYEQALQSYSYGALMDINE--- 85 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc--c----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---
Confidence 445667788899999999999999999998865221 2 346788899988887 999999999999876543
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 176 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES 212 (325)
Q Consensus 176 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 212 (325)
..++..+|.+|..+|++++|+.+|++++.+.+..
T Consensus 86 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 86 ---PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp ---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred ---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 2467889999999999999999999999887654
No 148
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.92 E-value=2.5e-08 Score=76.72 Aligned_cols=100 Identities=12% Similarity=0.044 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061 100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA 178 (325)
Q Consensus 100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~ 178 (325)
+..+..+|.++...|++++|+.+|++++.+.... ..++.++|.++...+ +++|+.+|++++.+.+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------ 76 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALELDGQS------ 76 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh------
Confidence 5678888999999999999999999988774321 357888999988887 999999999998875442
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 211 (325)
..++..+|.++..+|++++|+.+|++++.+.+.
T Consensus 77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 77 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 357889999999999999999999999998766
No 149
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.92 E-value=1.5e-08 Score=95.53 Aligned_cols=137 Identities=11% Similarity=0.020 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061 58 SAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKS---------AYHAAKHLEQAIMMCKELNDLTDVENLAKQAAT 128 (325)
Q Consensus 58 ~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~ 128 (325)
..+..+...|.++...|+|++|+.+|.+++.+...... ....+.++.++|.+|.++|++++|+.+|++++.
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 55678888999999999999999999999998876421 223468999999999999999999999999998
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHH-HHHHH
Q psy10061 129 LFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADL-IRQEI 206 (325)
Q Consensus 129 ~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~-~~~al 206 (325)
+... -..++.++|.+|...+ +++|+.+|++|+++.... ..++..++.++..++++.+|... |.+.+
T Consensus 346 ~~p~------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~------~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 346 LDSA------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN------KAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cCCc------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7432 2567999999999987 999999999999875443 25788999999999999988654 44433
No 150
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.89 E-value=2.3e-08 Score=91.65 Aligned_cols=132 Identities=13% Similarity=0.113 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC----------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061 58 SAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNK----------SAYHAAKHLEQAIMMCKELNDLTDVENLAKQAA 127 (325)
Q Consensus 58 ~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~----------~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~ 127 (325)
..+..+...|..+...|+|++|+.+|.+++.+..... .....+.++.++|.+|..+|++++|+.++++|+
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3456688889999999999999999999999765531 345567899999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHH
Q psy10061 128 TLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADL 201 (325)
Q Consensus 128 ~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 201 (325)
++.. .-+.++.++|.+|...+ +++|+.+|++|+++.... ..++..++.++..++++.++...
T Consensus 301 ~~~p------~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~------~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 301 EIDP------SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED------KAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TTCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhCc------hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 7632 22567899999999887 999999999999986542 35777899999988888877643
No 151
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.89 E-value=1.2e-08 Score=82.60 Aligned_cols=120 Identities=12% Similarity=0.032 Sum_probs=73.9
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hh
Q psy10061 73 AKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKS-LE 151 (325)
Q Consensus 73 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~-~~ 151 (325)
.|++++|...+.+++..... + ..++..+|.+|...|++++|+.+|++++.+... + ..++..+|.+ +.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~--~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~la~~l~~ 90 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQ--N----SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE--N----AELYAALATVLYY 90 (177)
T ss_dssp ----CCCCHHHHHHHHHCCS--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS--C----HHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCC--c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C----HHHHHHHHHHHHH
Confidence 45556666666666554321 1 346677777777777777777777777766432 1 3356667766 54
Q ss_pred ccC-H--HHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 152 ELK-S--DAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 152 ~~~-~--~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 210 (325)
..+ + ++|+.+|++++.+.... ..++..+|.+|...|++++|+.+|++++.+.+
T Consensus 91 ~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 91 QASQHMTAQTRAMIDKALALDSNE------ITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HTTTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred hcCCcchHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 544 5 77777777777664322 24566777777777777777777777766543
No 152
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.89 E-value=4.4e-08 Score=73.29 Aligned_cols=117 Identities=13% Similarity=0.118 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhh
Q psy10061 99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQ 177 (325)
Q Consensus 99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~ 177 (325)
.+.++..+|.+|...|++++|+.++++++.... .+ ...+..+|.++...+ +++|+.++++++.+....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----- 76 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----- 76 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--Cc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-----
Confidence 456778888888888888888888888876532 11 346778888887776 888888888888764322
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcC
Q psy10061 178 AAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARG 233 (325)
Q Consensus 178 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g 233 (325)
..++..+|.++...|++++|+.+|++++.+.+.. ..++..++.++...|
T Consensus 77 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 77 -AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAKQNLGNAKQKQG 125 (125)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhcc
Confidence 3567788888999999999999988887753221 124456666665543
No 153
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.86 E-value=9.7e-09 Score=90.55 Aligned_cols=161 Identities=16% Similarity=0.025 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061 100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA 178 (325)
Q Consensus 100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~ 178 (325)
...+..+|..+...|++++|+..|++++.+... + ..++..+|.++...+ +++|+.+|++++.... + .
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~--~----~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p---~---~ 184 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ--N----GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ---D---T 184 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS--C----HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC---S---H
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc--c----hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc---c---h
Confidence 456788999999999999999999999876432 2 347889999999888 9999999999876543 1 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHH
Q psy10061 179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTL 257 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l 257 (325)
.......+..+...++.++|+..|++++...+. ...+++++|.++...|++++|...|+++ ..-.+..+..+.
T Consensus 185 ~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~------~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 185 RYQGLVAQIELLXQAADTPEIQQLQQQVAENPE------DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 234556777788899999999999999886432 1246788999999999999999999998 333333445677
Q ss_pred HHHHHHHh-cCCHHHHHHHhcC
Q psy10061 258 EKLLQAFD-EEDPEGARQALND 278 (325)
Q Consensus 258 ~~L~~a~~-~gd~~~~~~~~~~ 278 (325)
..|+.++. .|+.+.+....++
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHH
Confidence 78888874 7877777666554
No 154
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.86 E-value=1.3e-08 Score=82.65 Aligned_cols=158 Identities=13% Similarity=0.049 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHH
Q psy10061 102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAE 180 (325)
Q Consensus 102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~ 180 (325)
.+...|.++...|++++|+..|++++.+.... ..++..+|.++...+ +++|+.+|++++.+.. . . .
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~--~----~ 74 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSR------GDVKLAKADCLLETKQFELAQELLATIPLEYQ-D--N----S 74 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C--H----H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C--h----H
Confidence 46678889999999999999999998764432 447899999999887 9999999999876654 1 1 1
Q ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHH
Q psy10061 181 YISRAARM-CVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLE 258 (325)
Q Consensus 181 ~~~~lg~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~ 258 (325)
....++.+ +...++..+|+..|++++.+.+. ...+++.+|.++...|++++|...|+++ .......+..+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~ 148 (176)
T 2r5s_A 75 YKSLIAKLELHQQAAESPELKRLEQELAANPD------NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKK 148 (176)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHH
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHH
Confidence 22223333 22334445689999999886432 1246788999999999999999999997 3322233345667
Q ss_pred HHHHHH-hcCCHHHHHHHhcC
Q psy10061 259 KLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 259 ~L~~a~-~~gd~~~~~~~~~~ 278 (325)
.|+.++ ..|+.+.+....++
T Consensus 149 ~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 149 TFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHhCCCCcHHHHHHH
Confidence 788887 58888888777665
No 155
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.85 E-value=5.7e-09 Score=91.76 Aligned_cols=101 Identities=11% Similarity=0.031 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Q psy10061 60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAA 139 (325)
Q Consensus 60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~a 139 (325)
+..+...|..+...|++++|+.+|.+++.+... + ..++.++|.+|..+|++++|+..+++++.+.. .-
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~ 71 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--V----AVYYTNRALCYLKMQQPEQALADCRRALELDG------QS 71 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT------TC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--c----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CC
Confidence 356778899999999999999999999887543 2 46889999999999999999999999987622 12
Q ss_pred HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC
Q psy10061 140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGE 172 (325)
Q Consensus 140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~ 172 (325)
..++.++|.+|...+ +++|+.+|++++++....
T Consensus 72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 457889999999887 999999999999988765
No 156
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.84 E-value=4.9e-08 Score=74.15 Aligned_cols=122 Identities=14% Similarity=0.045 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q psy10061 55 DYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQG 134 (325)
Q Consensus 55 ~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g 134 (325)
..+.-...+...|.++...|++++|..+|.+++...... ..++.++|.+|...|++++|+.++++++.+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-- 82 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-- 82 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT--
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--
Confidence 334556778888999999999999999999998764321 568999999999999999999999999986322
Q ss_pred CHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCC
Q psy10061 135 NREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE 194 (325)
Q Consensus 135 ~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 194 (325)
-..++..+|.++...+ +++|+.+|++++.+.... ..++..++.++..+|+
T Consensus 83 ----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 83 ----FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC------KEAADGYQRCMMAQYN 133 (133)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG------THHHHHHHHHHHHHTC
T ss_pred ----chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcC
Confidence 2457889999999887 999999999999876543 2467788888887764
No 157
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.83 E-value=2.5e-08 Score=80.69 Aligned_cols=117 Identities=9% Similarity=0.031 Sum_probs=93.6
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH-
Q psy10061 111 KELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARM- 188 (325)
Q Consensus 111 ~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~- 188 (325)
...|++++|+..+++++.... .+ ..++..+|.+|...+ +++|+.+|++++.+.... ..++..+|.+
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~l 88 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP--QN----SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN------AELYAALATVL 88 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC--SC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC------HHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhCC--Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHH
Confidence 345889999999999987632 22 347899999999887 999999999999987643 3578899999
Q ss_pred HHHcCCH--HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 189 CVRVKEF--DKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 189 ~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
+...|++ ++|+.+|++++.+.+.. ..++..+|.++...|++++|...|+++
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a 141 (177)
T 2e2e_A 89 YYQASQHMTAQTRAMIDKALALDSNE------ITALMLLASDAFMQANYAQAIELWQKV 141 (177)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 8899999 99999999999864321 246788999999999999999999997
No 158
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.82 E-value=1.4e-07 Score=71.64 Aligned_cols=106 Identities=11% Similarity=0.046 Sum_probs=66.1
Q ss_pred HHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHH
Q psy10061 143 LEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRL 221 (325)
Q Consensus 143 l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 221 (325)
+..+|..+...+ +++|+..|++++...... .....++..+|.++..+|+|++|+.+|++++...+... ....+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~ 78 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNG---VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD---KAAGG 78 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST---THHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc---ccHHH
Confidence 445566665555 777777777776665432 22235666777777777777777777777776543221 12345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHH
Q psy10061 222 AVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEV 254 (325)
Q Consensus 222 ~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~ 254 (325)
++.+|.++...|++++|...|+++ ..+.++...
T Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 79 LLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 667777777777777777777776 444444433
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.82 E-value=9.1e-08 Score=74.72 Aligned_cols=97 Identities=15% Similarity=0.076 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH
Q psy10061 137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL 215 (325)
Q Consensus 137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 215 (325)
..-...+..+|..+...+ +++|+.+|++++.+.... ..++..+|.+|..+|+|++|+.+|++++.+.+..
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--- 85 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD------ARYFLGLGACRQSLGLYEQALQSYSYGALMDINE--- 85 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---
Confidence 344566778888888877 999999999999875532 3678899999999999999999999999874321
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 216 LAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 216 ~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..+++.+|.++...|++++|...|+++
T Consensus 86 ---~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 86 ---PRFPFHAAECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp ---THHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---cHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 235678999999999999999999997
No 160
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.81 E-value=3e-09 Score=78.80 Aligned_cols=100 Identities=19% Similarity=0.186 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHH
Q psy10061 140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI 218 (325)
Q Consensus 140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 218 (325)
+..+..+|.++...+ +++|+.+|++++.+.+.. ..++.++|.++..+|++++|+..|++++.+.+..+.....
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 77 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 456777888887776 888888888888775432 3577889999999999999999999988876554444445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 219 GRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 219 ~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..++..+|.++...|++..|...+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 567788888888888777776666554
No 161
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.80 E-value=1.7e-09 Score=102.54 Aligned_cols=127 Identities=12% Similarity=-0.005 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhh
Q psy10061 99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQ 177 (325)
Q Consensus 99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~ 177 (325)
.+..+.++|.+|...|++++|+.+|++|+++... -+.++.++|.+|...+ +++|+.+|++|+++....
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----- 73 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----- 73 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-----
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----
Confidence 3455667788888889999999999999887322 2567889999998887 999999999999874322
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--HHhcCCHHHHHHHHH
Q psy10061 178 AAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLV--QLARGDTVAAEKAFK 243 (325)
Q Consensus 178 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~--~~~~gd~~~A~~~~~ 243 (325)
..++.++|.+|..+|++++|+.+|++++++.+... .++..++.+ +..+|++++|++.++
T Consensus 74 -~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 74 -IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK------DAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCT------THHHHHHHHHHHHHHHHHCCC-----
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 46888999999999999999999999998744322 233456666 888899999999999
No 162
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.79 E-value=3.7e-08 Score=75.09 Aligned_cols=95 Identities=9% Similarity=-0.035 Sum_probs=69.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHH
Q psy10061 103 LEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEY 181 (325)
Q Consensus 103 ~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~ 181 (325)
+...|.++...|++++|+..+++++.+... + +.++..+|.++...+ +++|+.+|++++++.... ..+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~--~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~~ 87 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE--R----EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------IAV 87 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Confidence 456677777888888888888888765322 1 346777888887776 888888888888775432 346
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 182 ISRAARMCVRVKEFDKAADLIRQEIGYH 209 (325)
Q Consensus 182 ~~~lg~~~~~~g~~~~A~~~~~~al~~~ 209 (325)
+..+|.+|...|++++|+.+|++++.+.
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 88 HAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7788888888888888888888887654
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.77 E-value=8.3e-08 Score=73.74 Aligned_cols=94 Identities=16% Similarity=0.069 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHH
Q psy10061 140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI 218 (325)
Q Consensus 140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 218 (325)
+..+..+|.++...+ +++|+.+|++++.+.... ..++..+|.++..+|++++|+.+|++++.+.+. .
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~ 76 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALELDGQ------S 76 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------C
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch------h
Confidence 457889999998887 999999999999986542 468899999999999999999999999987432 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 219 GRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 219 ~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..+++.+|.++...|++++|...|+++
T Consensus 77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 77 VKAHFFLGQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 246788999999999999999999997
No 164
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.77 E-value=2.5e-07 Score=69.03 Aligned_cols=118 Identities=14% Similarity=0.116 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH
Q psy10061 58 SAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNRE 137 (325)
Q Consensus 58 ~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~ 137 (325)
.....+...|.++...|++++|...|.+++..... + ..++..++.+|...|++++|+.++++++.+.. .+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~-- 76 (125)
T 1na0_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--N----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NN-- 76 (125)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC--
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--c----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--cc--
Confidence 34677888999999999999999999999876432 1 45788999999999999999999999987632 12
Q ss_pred HHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcC
Q psy10061 138 AASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVK 193 (325)
Q Consensus 138 ~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g 193 (325)
...+..+|.++...+ +++|+.++++++.+.... ..++..+|.++...|
T Consensus 77 --~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 77 --AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAKQNLGNAKQKQG 125 (125)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhcc
Confidence 346889999999887 999999999999875432 246677888877654
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.77 E-value=1e-07 Score=72.47 Aligned_cols=104 Identities=11% Similarity=-0.046 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHH
Q psy10061 102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAE 180 (325)
Q Consensus 102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~ 180 (325)
++.++|.++...|++++|+..+++++..... ......++..+|.++...+ +++|+.+|++++....... ....
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~ 77 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPN---GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD---KAAG 77 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST---THHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc---ccHH
Confidence 4667889999999999999999998876443 2333467888999998887 9999999999998875442 2356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 181 YISRAARMCVRVKEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 211 (325)
++..+|.+|..+|++++|+.+|++++...+.
T Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 78 GLLKLGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 7889999999999999999999999987543
No 166
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.76 E-value=7.9e-08 Score=91.87 Aligned_cols=184 Identities=11% Similarity=0.024 Sum_probs=134.8
Q ss_pred HHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q psy10061 33 EGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKE 112 (325)
Q Consensus 33 eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~ 112 (325)
+|.+.|.+|.+.. .++ -...+...+.++...|++++|...|.+++.+... + ...++.+.+.++.+
T Consensus 304 ~A~~~~~~Al~~~-------~p~---~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~---~~~~~~~~~~~~~~ 368 (530)
T 2ooe_A 304 EAANIYERAISTL-------LKK---NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI--D---PTLVYIQYMKFARR 368 (530)
T ss_dssp HHHHHHHHHTTTT-------CSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS--C---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-------Ccc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc--C---chHHHHHHHHHHHH
Confidence 7777777776522 122 2456778889999999999999999999875321 1 13578899999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH
Q psy10061 113 LNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKS-LEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCV 190 (325)
Q Consensus 113 ~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~-~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~ 190 (325)
.|++++|...|++|+..... . ...+...+.+ +...+ +++|..+|+++++..... ..++..++.++.
T Consensus 369 ~~~~~~A~~~~~~Al~~~~~--~----~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~------~~~~~~~~~~~~ 436 (530)
T 2ooe_A 369 AEGIKSGRMIFKKAREDART--R----HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI------PEYVLAYIDYLS 436 (530)
T ss_dssp HHHHHHHHHHHHHHHTCTTC--C----THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHHhccCC--c----hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC------HHHHHHHHHHHH
Confidence 99999999999999864211 1 1122333333 33344 999999999999987643 367889999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 191 RVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 191 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..|++++|..+|++++..... ++.....++...+......|+.+.+..+++++
T Consensus 437 ~~g~~~~Ar~~~~~al~~~~~--~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 437 HLNEDNNTRVLFERVLTSGSL--PPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp TTTCHHHHHHHHHHHHHSCCS--CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred hCCCHhhHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999875221 12222335566677777889999999999987
No 167
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.76 E-value=1.4e-08 Score=88.98 Aligned_cols=192 Identities=9% Similarity=-0.056 Sum_probs=128.5
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHHHHh--------
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKA-------ATCFKGAKSFQQCKEYLLKAANCYET-------- 92 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a-------~~~y~~~g~~~~A~~~~~~a~~~~~~-------- 92 (325)
.+++.+|.++|.++...-. +.- +.+.-. +.+....+++.+++-.+.+++.+...
T Consensus 19 ~~d~~~A~~~F~~a~~~dP--------~~~---Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDE--------SAC---DAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI 87 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCT--------TCH---HHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred CCCHHHHHHHHHHHHHhCh--------hhh---HHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence 4677888888887766552 222 222222 34444555556666666666553221
Q ss_pred cCCh-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHH
Q psy10061 93 NKSA-------YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSR 164 (325)
Q Consensus 93 ~~~~-------~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~ 164 (325)
.|-+ ...-......+.++...|++++|.+.+..... +.+... ....+|.++...+ +++|+.++++
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-----~~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~ 160 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV-----AGSEHL--VAWMKAVVYGAAERWTDVIDQVKS 160 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-----TTCHHH--HHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCchH--HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1110 11234555667888899999999999887654 334333 6677777877776 9999999986
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10061 165 AADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH-LLAIGRLAVALVLVQLARGDTVAAEKAFK 243 (325)
Q Consensus 165 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~~~~~gd~~~A~~~~~ 243 (325)
+... .+......++..+|.++..+|++++|+.+|++++.- .. +.....+.+.+|.|+..+|+.++|...|+
T Consensus 161 a~~~----~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g----~~~P~~~~da~~~~glaL~~lGr~deA~~~l~ 232 (282)
T 4f3v_A 161 AGKW----PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS----PAGEACARAIAWYLAMARRSQGNESAAVALLE 232 (282)
T ss_dssp GGGC----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhcc----CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC----CCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5322 233334567889999999999999999999998731 11 22234567889999999999999999999
Q ss_pred hh
Q psy10061 244 EW 245 (325)
Q Consensus 244 ~~ 245 (325)
+.
T Consensus 233 ~a 234 (282)
T 4f3v_A 233 WL 234 (282)
T ss_dssp HH
T ss_pred HH
Confidence 97
No 168
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.75 E-value=3.6e-05 Score=70.44 Aligned_cols=266 Identities=12% Similarity=0.082 Sum_probs=188.7
Q ss_pred cchhhhhhH-HHHHHhhchh---ccccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhc-CCHHH
Q psy10061 4 DRKKEEGME-YVKSAEKHSL---STMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGA-KSFQQ 78 (325)
Q Consensus 4 ~~~~~~~~~-~~~~ae~~~~---~~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~-g~~~~ 78 (325)
+|+..+..+ -+++=|.++- ..+...+++++-.+++.+....+.. -.-..+++.-..+.+.+... +..+.
T Consensus 4 ~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~kak~~k~v~~l~~~~~~~~~~~~~ 77 (394)
T 3txn_A 4 DQEGAENDEERIRIKEQGILQQGELYKQEGKAKELADLIKVTRPFLSS------ISKAKAAKLVRSLVDMFLDMDAGTGI 77 (394)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGG------SCHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred ccccCcCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------hchHHHHHHHHHHHHHHhcCCCcHHH
Confidence 445333322 3566666655 3556667889888888876655543 22366777777777777553 44555
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHH
Q psy10061 79 CKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDA 157 (325)
Q Consensus 79 A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~ 157 (325)
-.+....+++-.+.-...+---..=.+++.+|...|+|.+|...+.+...-+....+......++..-..+|...+ +.+
T Consensus 78 ~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k 157 (394)
T 3txn_A 78 EVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPK 157 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHH
Confidence 6666667776666554555444555689999999999999999999999988888887778888888888888776 999
Q ss_pred HHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCH
Q psy10061 158 ALTLYSRAADVAHGE-DNYKQAAEYISRAARMCV-RVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDT 235 (325)
Q Consensus 158 A~~~y~~Al~~~~~~-~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~ 235 (325)
+...|.+|..+.... .++...+.....-|.++. ..++|.+|..+|-++..-+.+.+.+... .++.-+++|-+..++.
T Consensus 158 ~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~-~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 158 ARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKAL-TSLKYMLLCKIMLGQS 236 (394)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHH-HHHHHHHHHHHHcCCH
Confidence 999999999888776 566666777778888888 8999999999999998888777654322 2334467777777774
Q ss_pred HHHHHHHHhh--cccCCChHHHHHHHHHHHHhcCCHHHHHHHhc
Q psy10061 236 VAAEKAFKEW--GNCCEAPEVQTLEKLLQAFDEEDPEGARQALN 277 (325)
Q Consensus 236 ~~A~~~~~~~--~~~~~~~e~~~l~~L~~a~~~gd~~~~~~~~~ 277 (325)
.+-...+..- ..+ ...+...+..|..++..+|...|...+.
T Consensus 237 ~el~~~l~~~~~~~~-~~pei~~l~~L~~a~~~~dl~~f~~iL~ 279 (394)
T 3txn_A 237 DDVNQLVSGKLAITY-SGRDIDAMKSVAEASHKRSLADFQAALK 279 (394)
T ss_dssp GGHHHHHHSHHHHTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccc-CCccHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3333332221 334 4566777888999999999988877665
No 169
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.74 E-value=1.9e-05 Score=72.23 Aligned_cols=217 Identities=12% Similarity=0.027 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCHHHH
Q psy10061 61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKEL-NDLTDVENLAKQAATLFLEQGNREAA 139 (325)
Q Consensus 61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~-g~~~eA~~~~~~A~~~~~~~g~~~~a 139 (325)
.+..++|.+|...|++++-.++.......+..+ ....++....++.+.+... +..+.-++....+++.........--
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSI-SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS-CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678999999999999888887766666555 4567888888888888765 44566778888888887777665533
Q ss_pred HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-ccHHH
Q psy10061 140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLA 217 (325)
Q Consensus 140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 217 (325)
-..-.++|.+|...+ |.+|++.+.+.+.-....++.....+++..-..+|..++++.++...+.++..+...+ .++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 344458888988877 9999999999999988888778888899899999999999999999999999988776 57778
Q ss_pred HHHHHHHHHHHHH-hcCCHHHHHHHHHhh-cccCCChHH---HHHH-HHHHHHhcCCHHHHHHHhcC
Q psy10061 218 IGRLAVALVLVQL-ARGDTVAAEKAFKEW-GNCCEAPEV---QTLE-KLLQAFDEEDPEGARQALND 278 (325)
Q Consensus 218 ~~~~~~~lg~~~~-~~gd~~~A~~~~~~~-~~~~~~~e~---~~l~-~L~~a~~~gd~~~~~~~~~~ 278 (325)
.+.+...-|..++ ..+||..|..+|-++ ..|...+.. .++. .+.-++-.++...+...+.+
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~ 245 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSG 245 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHS
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhcc
Confidence 8888899999999 899999999999997 566544332 2222 22333445665555554444
No 170
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.74 E-value=1.4e-07 Score=69.80 Aligned_cols=97 Identities=12% Similarity=0.072 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061 100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA 178 (325)
Q Consensus 100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~ 178 (325)
+..+..+|.++...|++++|+.++++++..... + ..++..+|.++...+ +++|+.++++++++....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------ 71 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH--N----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW------ 71 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--c----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc------
Confidence 456777788888888888888888888765322 1 346777787777666 888888888887764431
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 179 AEYISRAARMCVRVKEFDKAADLIRQEIGY 208 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 208 (325)
..++..+|.++...|++++|+.+|++++.+
T Consensus 72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 72 GKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 356778888888888888888888887765
No 171
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.73 E-value=2.4e-08 Score=92.55 Aligned_cols=191 Identities=18% Similarity=0.166 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHHH---------HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061 54 PDYDSAADDYSKA---------ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAK 124 (325)
Q Consensus 54 ~~~~~A~~~y~~a---------~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~ 124 (325)
+++++|.++|.++ +..+...|++++|..++..+.+.. ++ +.+...++.+|.+.|++.++.++++
T Consensus 46 g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~---~~----~~i~~~Li~~Y~Klg~l~e~e~f~~ 118 (449)
T 1b89_A 46 GMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RE----SYVETELIFALAKTNRLAELEEFIN 118 (449)
T ss_dssp ----------------------------------------------------------------------CHHHHTTTTT
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---cc----chhHHHHHHHHHHhCCHHHHHHHHc
Confidence 5555555555554 234455666666666555544321 11 2344555666666666666555543
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061 125 QAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIR 203 (325)
Q Consensus 125 ~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 203 (325)
. .+. ..+..+|..+...+ +++|..+|.++ ..+..+|.++.++|+|++|++.++
T Consensus 119 ~--------pn~----~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~ 172 (449)
T 1b89_A 119 G--------PNN----AHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGAR 172 (449)
T ss_dssp C--------C--------------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred C--------CcH----HHHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHH
Confidence 2 111 15667777777666 77777777655 245667777777777777777777
Q ss_pred HHHHHH---------HHcccHH----------HHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHH
Q psy10061 204 QEIGYH---------QESEHLL----------AIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAF 264 (325)
Q Consensus 204 ~al~~~---------~~~~~~~----------~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~ 264 (325)
++.... ...++.. ..+.-+..++.+|...|.+++|..++++.-..++. -..+...|+-++
T Consensus 173 KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~a-h~~~ftel~il~ 251 (449)
T 1b89_A 173 KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERA-HMGMFTELAILY 251 (449)
T ss_dssp HHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC-CHHHHHHHHHHH
T ss_pred HcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHH-HHHHHHHHHHHH
Confidence 763220 0011000 00011234667888899999999999987222211 133555667777
Q ss_pred hcCCHHHHHHHhcC
Q psy10061 265 DEEDPEGARQALND 278 (325)
Q Consensus 265 ~~gd~~~~~~~~~~ 278 (325)
..=.|+...++++.
T Consensus 252 ~ky~p~k~~ehl~~ 265 (449)
T 1b89_A 252 SKFKPQKMREHLEL 265 (449)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHH
Confidence 66777877777764
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=2.7e-07 Score=71.49 Aligned_cols=101 Identities=16% Similarity=0.124 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061 100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA 178 (325)
Q Consensus 100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~ 178 (325)
+..+..+|.++...|++++|+.+|++++.+ ..+......++.++|.+|...+ +++|+.+|++++.+....
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------ 98 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD------ 98 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC------
Confidence 556777788888888888888888887654 2233334567778888887776 888888888888764332
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 179 AEYISRAARMCVRVKEFDKAADLIRQEIGYH 209 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 209 (325)
..++..+|.++..+|++++|+.+|++++.+.
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3577788888888888888888888888764
No 173
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.72 E-value=2.5e-08 Score=90.16 Aligned_cols=103 Identities=15% Similarity=0.065 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC------CHHH-----HHHHHHHHHHHHhccC-HHHHHHHHHHHHH
Q psy10061 100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQG------NREA-----ASTVLEKGAKSLEELK-SDAALTLYSRAAD 167 (325)
Q Consensus 100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g------~~~~-----aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~ 167 (325)
+..+.+.|.++...|++++|+.+|++|+.+..... +... ...++.++|.+|...+ +++|+.+|+++++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555566666666666666666666655422110 0000 0124555555555554 5566666665555
Q ss_pred HHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 168 VAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 208 (325)
Q Consensus 168 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 208 (325)
+.... ..++.++|.+|..+|+|++|+.+|++++.+
T Consensus 259 ~~p~~------~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 259 EEEKN------PKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred hCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 43221 235555566666666666666665555554
No 174
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.71 E-value=1.3e-07 Score=82.79 Aligned_cols=219 Identities=11% Similarity=-0.025 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 59 AADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA-------IMMCKELNDLTDVENLAKQAATLFL 131 (325)
Q Consensus 59 A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~-------~~~y~~~g~~~eA~~~~~~A~~~~~ 131 (325)
....|..+.- + ..+++..|.++|.++.++.... +.++..+ +.+...+++..+++..+++++.+--
T Consensus 7 ~~~~~~~~~~-~-~~~d~~~A~~~F~~a~~~dP~~------~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p 78 (282)
T 4f3v_A 7 LASLFESAVS-M-LPMSEARSLDLFTEITNYDESA------CDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISM 78 (282)
T ss_dssp HHHHHHHHHH-H-TTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCG
T ss_pred HHHHHHHHhc-c-cCCCHHHHHHHHHHHHHhChhh------hHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 3444544443 4 5789999999999998887654 5567776 6777777778888888888876422
Q ss_pred H--------cCCH-------HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCH
Q psy10061 132 E--------QGNR-------EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEF 195 (325)
Q Consensus 132 ~--------~g~~-------~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 195 (325)
. .|-+ ...-.+....+.++...+ |++|.+.|...+. ..+.. . ....+|.++.+.++|
T Consensus 79 ~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-----~~p~~-~-~~~~~a~l~~~~~r~ 151 (282)
T 4f3v_A 79 STLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV-----AGSEH-L-VAWMKAVVYGAAERW 151 (282)
T ss_dssp GGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-----TTCHH-H-HHHHHHHHHHHTTCH
T ss_pred hhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCch-H-HHHHHHHHHHHcCCH
Confidence 1 2211 111223444566676666 9999988876653 22222 2 778899999999999
Q ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccC-CChHHHHHHHHHHHH-hcCCHHHH
Q psy10061 196 DKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCC-EAPEVQTLEKLLQAF-DEEDPEGA 272 (325)
Q Consensus 196 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~-~~~e~~~l~~L~~a~-~~gd~~~~ 272 (325)
++|+.+|++++.. .++.....+++.+|.++..+|++.+|+.+|+++ ..-. ......++..++.++ ..|+.+++
T Consensus 152 ~dA~~~l~~a~~~----~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA 227 (282)
T 4f3v_A 152 TDVIDQVKSAGKW----PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAA 227 (282)
T ss_dssp HHHHHHHTTGGGC----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhhcc----CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999865432 233333457788999999999999999999998 2221 221344666778887 69999999
Q ss_pred HHHhcChhhhcccHHHHHHhhcCC
Q psy10061 273 RQALNDPFIKHMDVEYSRLARDLP 296 (325)
Q Consensus 273 ~~~~~~~~~~~l~~~~~~~~~~l~ 296 (325)
...+++-.....+.++...+.+..
T Consensus 228 ~~~l~~a~a~~P~~~~~~aL~~~~ 251 (282)
T 4f3v_A 228 VALLEWLQTTHPEPKVAAALKDPS 251 (282)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCcHHHHHHHhCCC
Confidence 999998332222355555555443
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.71 E-value=5.7e-09 Score=98.91 Aligned_cols=125 Identities=17% Similarity=0.080 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10061 61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAAS 140 (325)
Q Consensus 61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa 140 (325)
+.+...|.++...|++++|..+|.+++++.... +.++.++|.+|..+|++++|+.++++|+++.. .-+
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p------~~~ 74 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELDK------KYI 74 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT------TCH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CCH
Confidence 344455677778899999999999998875432 67899999999999999999999999998722 224
Q ss_pred HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH--HHHcCCHHHHHHHHH
Q psy10061 141 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARM--CVRVKEFDKAADLIR 203 (325)
Q Consensus 141 ~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~--~~~~g~~~~A~~~~~ 203 (325)
.++.++|.+|...+ +++|+.+|++++++..... .++..++.+ +..+|++++|++.++
T Consensus 75 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 75 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDK------DAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCT------THHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 57899999999887 9999999999999865442 255567776 888999999999998
No 176
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.69 E-value=3.6e-08 Score=89.11 Aligned_cols=141 Identities=11% Similarity=0.024 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc------CChHH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061 58 SAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN------KSAYH-----AAKHLEQAIMMCKELNDLTDVENLAKQA 126 (325)
Q Consensus 58 ~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~------~~~~~-----aa~~~~~~~~~y~~~g~~~eA~~~~~~A 126 (325)
..+..+...|..+...|+|++|+.+|.+++.+.... +.... ...++.++|.+|..+|++++|+.+++++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456777788899999999999999999988764321 11111 1148999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH-HHHcCCHHHHHHHHHH
Q psy10061 127 ATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARM-CVRVKEFDKAADLIRQ 204 (325)
Q Consensus 127 ~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~-~~~~g~~~~A~~~~~~ 204 (325)
+.+.. .-..++.++|.+|...+ +++|+.+|++++.+.... ..++..++.+ ....+.++++...|.+
T Consensus 257 l~~~p------~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~------~~a~~~L~~l~~~~~~~~~~a~~~~~~ 324 (338)
T 2if4_A 257 LTEEE------KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD------KAIRRELRALAEQEKALYQKQKEMYKG 324 (338)
T ss_dssp HHHCT------TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred HHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98732 12457999999999988 999999999999876543 2466677777 3455678888889998
Q ss_pred HHHHHH
Q psy10061 205 EIGYHQ 210 (325)
Q Consensus 205 al~~~~ 210 (325)
++...+
T Consensus 325 ~l~~~p 330 (338)
T 2if4_A 325 IFKGKD 330 (338)
T ss_dssp ------
T ss_pred hhCCCC
Confidence 887644
No 177
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.69 E-value=8.1e-07 Score=65.51 Aligned_cols=94 Identities=14% Similarity=0.097 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHH
Q psy10061 140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI 218 (325)
Q Consensus 140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 218 (325)
+..+..+|.++...+ +++|+.+|++++...+.. ..++..+|.++...|++++|+.++++++.+.+. .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~ 71 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------W 71 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------C
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc------c
Confidence 456888899988777 999999999999876532 457889999999999999999999999986432 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 219 GRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 219 ~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..++..+|.++...|++++|...|+++
T Consensus 72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 72 GKGYSRKAAALEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 246788999999999999999999998
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.67 E-value=1.4e-07 Score=71.83 Aligned_cols=91 Identities=11% Similarity=0.037 Sum_probs=77.1
Q ss_pred HHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHH
Q psy10061 143 LEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRL 221 (325)
Q Consensus 143 l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 221 (325)
+..+|..+...+ +++|+.+|++++.+.... ..++..+|.++..+|++++|+..|++++.+.+.. ..+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~~ 87 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------IAV 87 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Confidence 566787877776 999999999999876543 4688899999999999999999999999874321 236
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 222 AVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 222 ~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
+..+|.++...|++++|+..|+++
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 88 HAALAVSHTNEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 688999999999999999999997
No 179
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.64 E-value=1.6e-08 Score=74.68 Aligned_cols=98 Identities=8% Similarity=-0.057 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061 100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA 178 (325)
Q Consensus 100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~ 178 (325)
+..+.++|.++...|++++|+.+|++++.+.... ..++.++|.++...+ +++|+.+|++++.+.+..++....
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 77 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 4678888999999999999999999998773321 456888999998887 999999999999887776555556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061 179 AEYISRAARMCVRVKEFDKAADLIR 203 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~~A~~~~~ 203 (325)
..++..+|.++..+|+++.|+..++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 6788899999999888877766544
No 180
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.61 E-value=9.2e-08 Score=88.65 Aligned_cols=163 Identities=10% Similarity=0.075 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------HHH
Q psy10061 62 DYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATL---------FLE 132 (325)
Q Consensus 62 ~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~---------~~~ 132 (325)
.+..+|..+...|.|++|..+|.++ ..+.+++.++.++|++++|++++++|... +..
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVD 189 (449)
T ss_dssp -------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence 4556666666666666666666644 35667777777777777777777776322 223
Q ss_pred cCCHHHHHHH----------HHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHc--CCHHHHH
Q psy10061 133 QGNREAASTV----------LEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRV--KEFDKAA 199 (325)
Q Consensus 133 ~g~~~~aa~~----------l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~--g~~~~A~ 199 (325)
.|++..|-.+ +..+..+|+..| +++|+.++++++.+-+. ....+..+|.+|.+- ++..+.+
T Consensus 190 ~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~a------h~~~ftel~il~~ky~p~k~~ehl 263 (449)
T 1b89_A 190 GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERA------HMGMFTELAILYSKFKPQKMREHL 263 (449)
T ss_dssp TTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC------CHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHH------HHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3433333221 223445666665 67777777666643211 123455555555433 4555555
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 200 DLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 200 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
+.|...+.+.+-+. .....+.|..++-+|...|+++.|....-+.
T Consensus 264 ~~~~~~ini~k~~~-~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 264 ELFWSRVNIPKVLR-AAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHSTTSCHHHHHH-HHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHhcCcHHHH-HHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 55554444322110 0123456778899999999999998887764
No 181
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=9.1e-07 Score=68.39 Aligned_cols=104 Identities=14% Similarity=0.081 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Q psy10061 59 AADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREA 138 (325)
Q Consensus 59 A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~ 138 (325)
-+..+...|..+...|++++|..+|.+++.+. .+......++.++|.+|...|++++|+.++++++.+... +
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~--- 98 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG--D--- 98 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC--C---
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc--C---
Confidence 35667788999999999999999999987653 233445788999999999999999999999999887322 2
Q ss_pred HHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc
Q psy10061 139 ASTVLEKGAKSLEELK-SDAALTLYSRAADVAHG 171 (325)
Q Consensus 139 aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~ 171 (325)
..++..+|.++...+ +++|+.+|++++.+...
T Consensus 99 -~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 99 -VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 457889999999887 99999999999987654
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.61 E-value=1.3e-07 Score=71.25 Aligned_cols=89 Identities=8% Similarity=-0.018 Sum_probs=66.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH
Q psy10061 113 LNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVR 191 (325)
Q Consensus 113 ~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~ 191 (325)
+|++++|+.+|++++++. .+...-..++.++|.+|...+ +++|+.+|++++++.+.. ..++..+|.++..
T Consensus 3 ~g~~~~A~~~~~~al~~~---~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~ 73 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASG---LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH------QALRVFYAMVLYN 73 (117)
T ss_dssp ----CCCHHHHHHHHSSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcC---CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHH
Confidence 578888888888887641 112345677888888888877 999999999998876543 4578889999999
Q ss_pred cCCHHHHHHHHHHHHHHHH
Q psy10061 192 VKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 192 ~g~~~~A~~~~~~al~~~~ 210 (325)
+|++++|+.+|++++...+
T Consensus 74 ~g~~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 74 LGRYEQGVELLLKIIAETS 92 (117)
T ss_dssp HTCHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhCC
Confidence 9999999999999887643
No 183
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.60 E-value=5.7e-07 Score=70.16 Aligned_cols=106 Identities=15% Similarity=0.095 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH-
Q psy10061 114 NDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVR- 191 (325)
Q Consensus 114 g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~- 191 (325)
+++++|+.+|+++++ .|+.... +|.+|.... .++|+.+|++|++. ++ ..+..++|.+|..
T Consensus 9 ~d~~~A~~~~~~aa~----~g~~~a~------lg~~y~~g~~~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G 70 (138)
T 1klx_A 9 KDLKKAIQYYVKACE----LNEMFGC------LSLVSNSQINKQKLFQYLSKACEL----NS----GNGCRFLGDFYENG 70 (138)
T ss_dssp HHHHHHHHHHHHHHH----TTCTTHH------HHHHTCTTSCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHc----CCCHhhh------HHHHHHcCCCHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHcC
Confidence 357788888888864 3554422 888887665 77788888888764 33 3577788888888
Q ss_pred ---cCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHhh
Q psy10061 192 ---VKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLA----RGDTVAAEKAFKEW 245 (325)
Q Consensus 192 ---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~----~gd~~~A~~~~~~~ 245 (325)
.+++++|+.+|+++.+. ++. .+.+++|.+|.. .+|+++|..+|+++
T Consensus 71 ~g~~~d~~~A~~~~~~Aa~~----g~~----~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 71 KYVKKDLRKAAQYYSKACGL----NDQ----DGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT----TCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHcC----CCH----HHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 78899999998888753 332 356788888888 88888888888887
No 184
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.59 E-value=3.5e-07 Score=80.26 Aligned_cols=101 Identities=12% Similarity=0.042 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061 100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA 178 (325)
Q Consensus 100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~ 178 (325)
+..+...|.++...|++++|+.+|++++.+... + ..++.++|.+|...+ +++|+..|++++++....
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------ 71 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--V----AVYYTNRALCYLKMQQPEQALADCRRALELDGQS------ 71 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--c----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------
Confidence 457889999999999999999999999987321 2 457899999999887 999999999999764322
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQES 212 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 212 (325)
..++..+|.+|..+|++++|+.+|++++.+.+..
T Consensus 72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 4688899999999999999999999999987754
No 185
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.58 E-value=1.3e-07 Score=69.37 Aligned_cols=96 Identities=15% Similarity=0.033 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHH
Q psy10061 102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAE 180 (325)
Q Consensus 102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~ 180 (325)
++..+|.++...|++++|+.++++++.+.. .+ ...+..+|.++...+ +++|+.+|++++++.... ....
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~ 77 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP--EE----SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE----YNKD 77 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC--CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT----TCHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc----chHH
Confidence 445566667777777777777777665421 11 234566666666655 777777777766654330 0134
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q psy10061 181 YISRAARMCVRV-KEFDKAADLIRQEIG 207 (325)
Q Consensus 181 ~~~~lg~~~~~~-g~~~~A~~~~~~al~ 207 (325)
++..+|.++..+ |++++|++++++++.
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 78 VWAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 566677777777 777777777666654
No 186
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.57 E-value=1.2e-07 Score=69.44 Aligned_cols=94 Identities=14% Similarity=0.057 Sum_probs=77.8
Q ss_pred HHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHH
Q psy10061 142 VLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGR 220 (325)
Q Consensus 142 ~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 220 (325)
.+..+|.++...+ +++|+.+|++++++.... ..++..+|.++..+|++++|+.+|++++.+.+. .....
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~ 77 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE------SKYWLMKGKALYNLERYEEAVDCYNYVINVIED----EYNKD 77 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC----TTCHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc----cchHH
Confidence 4667888888877 999999999999875432 357889999999999999999999999876432 00124
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHhh
Q psy10061 221 LAVALVLVQLAR-GDTVAAEKAFKEW 245 (325)
Q Consensus 221 ~~~~lg~~~~~~-gd~~~A~~~~~~~ 245 (325)
++..+|.++... |++++|.+++++.
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 78 VWAAKADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHHHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 678899999999 9999999999997
No 187
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.55 E-value=1e-06 Score=68.62 Aligned_cols=108 Identities=12% Similarity=0.097 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc--
Q psy10061 75 SFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEE-- 152 (325)
Q Consensus 75 ~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~-- 152 (325)
++++|..+|.++++. ++... . +|.+|...+..++|+.+|++|++. |+. .++.++|.+|..
T Consensus 10 d~~~A~~~~~~aa~~----g~~~a----~--lg~~y~~g~~~~~A~~~~~~Aa~~----g~~----~a~~~Lg~~y~~G~ 71 (138)
T 1klx_A 10 DLKKAIQYYVKACEL----NEMFG----C--LSLVSNSQINKQKLFQYLSKACEL----NSG----NGCRFLGDFYENGK 71 (138)
T ss_dssp HHHHHHHHHHHHHHT----TCTTH----H--HHHHTCTTSCHHHHHHHHHHHHHT----TCH----HHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHcC----CCHhh----h--HHHHHHcCCCHHHHHHHHHHHHcC----CCH----HHHHHHHHHHHcCC
Confidence 567777777777643 33322 2 899999888899999999999864 664 478999999986
Q ss_pred --c-CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q psy10061 153 --L-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVR----VKEFDKAADLIRQEIGY 208 (325)
Q Consensus 153 --~-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~ 208 (325)
. ++++|+.+|++|++. ++ ..+..++|.+|.. .+++++|+.+|+++.+.
T Consensus 72 g~~~d~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 72 YVKKDLRKAAQYYSKACGL----ND----QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 3 499999999999864 33 3578899999999 89999999999999774
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.53 E-value=5e-07 Score=67.90 Aligned_cols=89 Identities=10% Similarity=0.052 Sum_probs=69.1
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI 107 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~ 107 (325)
.|++++|+.+|++|.+.. .+.+.-...+..+|.+|...|++++|+.+|.+++.+.... ..++.++|
T Consensus 3 ~g~~~~A~~~~~~al~~~--------~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~ 68 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASG--------LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH------QALRVFYA 68 (117)
T ss_dssp ----CCCHHHHHHHHSSC--------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcC--------CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hHHHHHHH
Confidence 357889999999887742 2234556788899999999999999999999998876543 46788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 108 MMCKELNDLTDVENLAKQAATLF 130 (325)
Q Consensus 108 ~~y~~~g~~~eA~~~~~~A~~~~ 130 (325)
.+|..+|++++|+.++++++...
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999988764
No 189
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.38 E-value=3.6e-06 Score=62.71 Aligned_cols=90 Identities=9% Similarity=-0.033 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q psy10061 32 EEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCK 111 (325)
Q Consensus 32 ~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~ 111 (325)
.+|+++|.++.+... +. ...+..+|.+|...|++++|..+|.+++.+.... ..++.++|.+|.
T Consensus 2 ~~a~~~~~~al~~~p--------~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~ 64 (115)
T 2kat_A 2 QAITERLEAMLAQGT--------DN---MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY------SVAWKWLGKTLQ 64 (115)
T ss_dssp CCHHHHHHHHHTTTC--------CC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCC--------Cc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHH
Confidence 357778887766442 22 3567889999999999999999999998875432 457889999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHH
Q psy10061 112 ELNDLTDVENLAKQAATLFLEQGNREA 138 (325)
Q Consensus 112 ~~g~~~eA~~~~~~A~~~~~~~g~~~~ 138 (325)
.+|++++|+.+|++++.+....++...
T Consensus 65 ~~g~~~~A~~~~~~al~~~~~~~~~~~ 91 (115)
T 2kat_A 65 GQGDRAGARQAWESGLAAAQSRGDQQV 91 (115)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HcCCHHHHHHHHHHHHHhccccccHHH
Confidence 999999999999999999888877553
No 190
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.35 E-value=4e-06 Score=62.46 Aligned_cols=65 Identities=15% Similarity=-0.010 Sum_probs=33.5
Q ss_pred HHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 142 VLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES 212 (325)
Q Consensus 142 ~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 212 (325)
.+..+|.+|...+ +++|+.+|++++.+.... ..++..+|.+|..+|++++|+.+|++++.+.+..
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAALDFDPTY------SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 4455555555444 555555555555543221 2344555555555555555555555555554443
No 191
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.35 E-value=7e-06 Score=59.82 Aligned_cols=69 Identities=16% Similarity=0.100 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH
Q psy10061 141 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL 215 (325)
Q Consensus 141 ~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 215 (325)
.++..+|.+|...+ +++|+.+|++++++.... ..++..+|.+|..+|++++|+..|++++.+.+..++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDY------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence 35667777777665 777777777777765432 2366777777777777777777777777776655543
No 192
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.35 E-value=4.5e-06 Score=58.82 Aligned_cols=83 Identities=12% Similarity=0.173 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHH
Q psy10061 139 ASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLA 217 (325)
Q Consensus 139 aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 217 (325)
.+..+..+|.++...+ +++|+.+|++++.+.... ..++..+|.++...|++++|+.+|++++.+.+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----- 76 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----- 76 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-----
Confidence 3455666666666655 777777777777654321 3466677777777777777777777777653211
Q ss_pred HHHHHHHHHHHHHhcC
Q psy10061 218 IGRLAVALVLVQLARG 233 (325)
Q Consensus 218 ~~~~~~~lg~~~~~~g 233 (325)
..++.++|.++...|
T Consensus 77 -~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 77 -AEAKQNLGNAKQKQG 91 (91)
T ss_dssp -HHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHhcC
Confidence 134456666665543
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.33 E-value=7.5e-06 Score=59.68 Aligned_cols=76 Identities=9% Similarity=-0.022 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Q psy10061 60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAA 139 (325)
Q Consensus 60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~a 139 (325)
...+..+|.+|...|++++|+.+|.+++++.... ..++.++|.+|..+|++++|+.+|++++.+....++....
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDY------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence 3567788999999999999999999998876543 2478899999999999999999999999998888886644
Q ss_pred HH
Q psy10061 140 ST 141 (325)
Q Consensus 140 a~ 141 (325)
..
T Consensus 81 ~~ 82 (100)
T 3ma5_A 81 SE 82 (100)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.29 E-value=6.9e-06 Score=57.82 Aligned_cols=84 Identities=13% Similarity=0.058 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChh
Q psy10061 98 HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYK 176 (325)
Q Consensus 98 ~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~ 176 (325)
..+.++..+|.+|...|++++|+.++++++.+... + ...+..+|.++...+ +++|+.+|++++++....
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---- 76 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--N----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---- 76 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC----
Confidence 34566777777777778888888888877765321 1 345677777777766 888888888887764322
Q ss_pred hHHHHHHHHHHHHHHcC
Q psy10061 177 QAAEYISRAARMCVRVK 193 (325)
Q Consensus 177 ~~~~~~~~lg~~~~~~g 193 (325)
..++..+|.++..+|
T Consensus 77 --~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 77 --AEAKQNLGNAKQKQG 91 (91)
T ss_dssp --HHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHhcC
Confidence 345667777766543
No 195
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.28 E-value=1.3e-06 Score=69.55 Aligned_cols=87 Identities=13% Similarity=0.062 Sum_probs=55.4
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHHcCCHHHHHHH
Q psy10061 73 AKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLT----------DVENLAKQAATLFLEQGNREAASTV 142 (325)
Q Consensus 73 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~----------eA~~~~~~A~~~~~~~g~~~~aa~~ 142 (325)
.+.|++|+..+.+++++.... +.++.+.|.++..+++++ +|+..|++|+.+--. ...+
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~------~~~A 82 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLD------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK------KDEA 82 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC------cHHH
Confidence 445778888888887766542 568888888888887764 666666666655211 2335
Q ss_pred HHHHHHHHhcc------------CHHHHHHHHHHHHHHHhc
Q psy10061 143 LEKGAKSLEEL------------KSDAALTLYSRAADVAHG 171 (325)
Q Consensus 143 l~~lg~~~~~~------------~~~~A~~~y~~Al~~~~~ 171 (325)
+.++|.+|... ++++|+.+|++|+++-..
T Consensus 83 ~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 83 VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 56666666543 266666666666666443
No 196
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.23 E-value=1.4e-06 Score=69.35 Aligned_cols=87 Identities=10% Similarity=-0.049 Sum_probs=66.5
Q ss_pred ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHHHhcCChHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSF----------QQCKEYLLKAANCYETNKSAYH 98 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~----------~~A~~~~~~a~~~~~~~~~~~~ 98 (325)
+.+++|++.+++|.++.. + -.+.+.+.|.++..++++ ++|+.+|++|+++..+.
T Consensus 16 ~~feeA~~~~~~Ai~l~P--------~---~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~----- 79 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNP--------L---DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK----- 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHCT--------T---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-----
T ss_pred hHHHHHHHHHHHHHHHCC--------C---CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc-----
Confidence 367888888888877652 2 235677778888877665 59999999998887653
Q ss_pred HHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHH
Q psy10061 99 AAKHLEQAIMMCKELN-----------DLTDVENLAKQAATLFLE 132 (325)
Q Consensus 99 aa~~~~~~~~~y~~~g-----------~~~eA~~~~~~A~~~~~~ 132 (325)
..++.++|++|..+| ++++|+.+|++|+++-..
T Consensus 80 -~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 80 -DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp -HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred -HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 568999999999875 899999999999887443
No 197
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.21 E-value=5.9e-05 Score=66.90 Aligned_cols=188 Identities=10% Similarity=0.036 Sum_probs=131.1
Q ss_pred HHHHHhcC--CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHHHHHcCCHH
Q psy10061 67 ATCFKGAK--SFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMC----KEL---NDLTDVENLAKQAATLFLEQGNRE 137 (325)
Q Consensus 67 ~~~y~~~g--~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y----~~~---g~~~eA~~~~~~A~~~~~~~g~~~ 137 (325)
+.+...++ ++++++.++..++....+.-. ++..-+.+. ... +++++++.++.++++... .++.
T Consensus 74 ~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~------aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p--kny~ 145 (306)
T 3dra_A 74 FNILKNLPNRNLYDELDWCEEIALDNEKNYQ------IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP--KNHH 145 (306)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH------HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT--TCHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHHCcccHH------HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC--CCHH
Confidence 45666777 999999999999887665421 233333333 444 789999999999987533 3333
Q ss_pred HHHHHHHHHHHHHhccC-HH--HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHH
Q psy10061 138 AASTVLEKGAKSLEELK-SD--AALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE------FDKAADLIRQEIGY 208 (325)
Q Consensus 138 ~aa~~l~~lg~~~~~~~-~~--~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~------~~~A~~~~~~al~~ 208 (325)
++..-+.++...+ ++ ++++++.++++..... ..+++..+.+....++ ++++++++++++.+
T Consensus 146 ----aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N------~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~ 215 (306)
T 3dra_A 146 ----VWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN------NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK 215 (306)
T ss_dssp ----HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh
Confidence 5777777777776 66 9999999999865433 2578888888888887 99999999999886
Q ss_pred HHHcccHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHhhcccC--CChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 209 HQESEHLLAIGRLAVALVLVQLARGDTVA-AEKAFKEWGNCC--EAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 209 ~~~~~~~~~~~~~~~~lg~~~~~~gd~~~-A~~~~~~~~~~~--~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
.+.. . .+++.++.++...|.... ..++..++-... ......++.-|++++ +.|+.+.+.+++..
T Consensus 216 ~p~n-----~-SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 216 CPQN-----P-STWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp CSSC-----H-HHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCC-----c-cHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 4322 1 255667777777777444 445555551111 122345788888887 58999999988877
No 198
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.16 E-value=6.3e-05 Score=66.58 Aligned_cols=167 Identities=11% Similarity=0.070 Sum_probs=92.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy10061 64 SKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVL 143 (325)
Q Consensus 64 ~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l 143 (325)
.-+|.++...|++++|+..+.+.+... .......++..++.+|..+|+++.|...+++...+.... ...--..+
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~----~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~--~~~~d~~l 177 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDND----EAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT--VSGDNEMI 177 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSS----CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH--HHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccC----CCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc--cccchHHH
Confidence 467777777788888887777653211 112334566677777888888888877777754331100 00001122
Q ss_pred HHHHHH----Hhcc-CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH---
Q psy10061 144 EKGAKS----LEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL--- 215 (325)
Q Consensus 144 ~~lg~~----~~~~-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--- 215 (325)
..++.. .... ++.+|...|++..+.+. +.. ....+.+ ++..+|++++|...++..+..+.+.++.
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p---~~~-~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~ 250 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQTFP---TWK-TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENA 250 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC---SHH-HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC---Ccc-cHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccC
Confidence 333322 1222 27777777777644332 111 1122222 6777788888888877666665442110
Q ss_pred -HHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 216 -LAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 216 -~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
...+.++.+++.+....|+ .|.+++++.
T Consensus 251 ~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL 279 (310)
T 3mv2_B 251 VLYKPTFLANQITLALMQGL--DTEDLTNQL 279 (310)
T ss_dssp HSSHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 1123455567777777776 666666665
No 199
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=98.07 E-value=0.0043 Score=54.76 Aligned_cols=220 Identities=11% Similarity=0.027 Sum_probs=149.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061 54 PDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ 133 (325)
Q Consensus 54 ~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~ 133 (325)
++|-+|-+.|.-+..=|..+++|++|++.+...+..+-+.+....+++...-+.++|.+.+..- ..+.
T Consensus 27 G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~-~~~~----------- 94 (312)
T 2wpv_A 27 GDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKV-DDIS----------- 94 (312)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC-SHHH-----------
T ss_pred cChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCC-CHHH-----------
Confidence 7899999999999999999999999999988877777766666666666556666666544221 1112
Q ss_pred CCHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH----H
Q psy10061 134 GNREAASTVLEKGAKSLEELK--SDAALTLYSRAADVAHGEDN-YKQAAEYISRAARMCVRVKEFDKAADLIRQE----I 206 (325)
Q Consensus 134 g~~~~aa~~l~~lg~~~~~~~--~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a----l 206 (325)
..++..++..-. -..-..+..+|+.+..+.+. ..+-.+.+..+|..|.+-|++.+|..+|-.. .
T Consensus 95 ---------~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~ 165 (312)
T 2wpv_A 95 ---------VARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSM 165 (312)
T ss_dssp ---------HHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHH
T ss_pred ---------HHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccH
Confidence 333444433321 11124566777777765543 3444578889999999999999999987421 1
Q ss_pred HH--------HHHc--ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cc---------------------cCCChHH
Q psy10061 207 GY--------HQES--EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GN---------------------CCEAPEV 254 (325)
Q Consensus 207 ~~--------~~~~--~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~---------------------~~~~~e~ 254 (325)
+. ..+. +.+........+.+..|+..|+...|...|..+ .. |....--
T Consensus 166 ~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~p~~pll 245 (312)
T 2wpv_A 166 IKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERFIEKFHPKYEKIDKNGYEIVFFEDYSDL 245 (312)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHCCCEEEEEETTEEEEEESSCHHH
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcccccccccccccCCCCCCCCccH
Confidence 11 1222 444445555567778889999999999999875 11 2334556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhcC--hhhhcccHHHHHHhhc
Q psy10061 255 QTLEKLLQAFDEEDPEGARQALND--PFIKHMDVEYSRLARD 294 (325)
Q Consensus 255 ~~l~~L~~a~~~gd~~~~~~~~~~--~~~~~l~~~~~~~~~~ 294 (325)
.++.-|..+++.++.+.|+..+++ +.++.....+.+|+..
T Consensus 246 nF~~lLl~t~e~~~~~lF~~L~~~Y~~~L~~~~~~L~~Ig~~ 287 (312)
T 2wpv_A 246 NFLQLLLITCQTKDKSYFLNLKNHYLDFSQAYKSELEFLGQE 287 (312)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHCHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788889999999999999887 5555556666666665
No 200
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.91 E-value=0.0026 Score=62.57 Aligned_cols=220 Identities=6% Similarity=0.022 Sum_probs=139.4
Q ss_pred HHHHHHHHHhcCCHHHHH-HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--------
Q psy10061 63 YSKAATCFKGAKSFQQCK-EYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ-------- 133 (325)
Q Consensus 63 y~~a~~~y~~~g~~~~A~-~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~-------- 133 (325)
+...+......|+.++|. ..|.+|+...... ...+...+.+....|++++|...|++++......
T Consensus 346 W~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s------~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~ 419 (679)
T 4e6h_A 346 WFNMANYQGEKNTDSTVITKYLKLGQQCIPNS------AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD 419 (679)
T ss_dssp HHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 334455566678888887 9999987644321 3456778888889999999999999999875311
Q ss_pred CC--------HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcC-CHHHHHHHHH
Q psy10061 134 GN--------REAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVK-EFDKAADLIR 203 (325)
Q Consensus 134 g~--------~~~aa~~l~~lg~~~~~~-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~ 203 (325)
.. ......++...+.+.... +.+.|...|.+|++...... ..++...+.+-...+ +++.|..+|+
T Consensus 420 p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~-----~~lyi~~A~lE~~~~~d~e~Ar~ife 494 (679)
T 4e6h_A 420 PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT-----PDIYLENAYIEYHISKDTKTACKVLE 494 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-----THHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 10 001233455555554443 48999999999987522211 235556666666665 5999999999
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHH-HHHHHHHHHH-hcCCHHHHHHHhcC-h
Q psy10061 204 QEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEV-QTLEKLLQAF-DEEDPEGARQALND-P 279 (325)
Q Consensus 204 ~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~-~~l~~L~~a~-~~gd~~~~~~~~~~-~ 279 (325)
+++..++.... .+...+......|+.+.|...|+++ ....+..+. .+.....+-- ..|+.+.+....++ .
T Consensus 495 ~~Lk~~p~~~~------~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~ 568 (679)
T 4e6h_A 495 LGLKYFATDGE------YINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFF 568 (679)
T ss_dssp HHHHHHTTCHH------HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHHHHCCCchH------HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99998654322 3344556667789999999999998 333322233 3333444432 47888888887776 2
Q ss_pred hhhcccHHHHHHhhcCCCCC
Q psy10061 280 FIKHMDVEYSRLARDLPLPS 299 (325)
Q Consensus 280 ~~~~l~~~~~~~~~~l~~~~ 299 (325)
..-.-++.+..+..+..+++
T Consensus 569 ~~~P~~~~~~~f~~ry~~~~ 588 (679)
T 4e6h_A 569 EKFPEVNKLEEFTNKYKVLD 588 (679)
T ss_dssp HHSTTCCHHHHHHHHTCBTT
T ss_pred HhCCCCcHHHHHHHHhcCCc
Confidence 11122345555555555443
No 201
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.90 E-value=0.00019 Score=63.53 Aligned_cols=180 Identities=10% Similarity=0.025 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHH
Q psy10061 102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAE 180 (325)
Q Consensus 102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~ 180 (325)
.+.-+|.+|...|++++|+.++.+.+. .+.......++..++.++...+ .+.|.+.+++..+..+.. ....-.
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~----~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~--~~~~d~ 175 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGID----NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT--VSGDNE 175 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHT----SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH--HHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc----cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc--cccchH
Confidence 345889999999999999999998743 2221244557778888888887 999999999876653210 000113
Q ss_pred HHHHHH--HHHHHcC--CHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----cccC---
Q psy10061 181 YISRAA--RMCVRVK--EFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW----GNCC--- 249 (325)
Q Consensus 181 ~~~~lg--~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~~--- 249 (325)
++..++ ++....| ++.+|+.+|++....+ ++ +.....+++ +++.+|++++|...++.. +.+.
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p~-~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~ 248 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQTF---PT-WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKE 248 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---CS-HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---CC-cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccc
Confidence 444554 4455556 9999999999965432 22 112223333 899999999999999875 3331
Q ss_pred --CChHHHHHHHHHHH-HhcCCHHHHHHHhcC--------h---hhhcccHHHHHHhhcCC
Q psy10061 250 --EAPEVQTLEKLLQA-FDEEDPEGARQALND--------P---FIKHMDVEYSRLARDLP 296 (325)
Q Consensus 250 --~~~e~~~l~~L~~a-~~~gd~~~~~~~~~~--------~---~~~~l~~~~~~~~~~l~ 296 (325)
......++.+++.. +..|+ .+.+.+++ + -+...+..+.+++.+..
T Consensus 249 ~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~k~~~Fd~~~~ky~ 307 (310)
T 3mv2_B 249 NAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQEIDAKFDELVRKYD 307 (310)
T ss_dssp HHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred cCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhc
Confidence 24567788776554 34565 33344333 1 12334455666666664
No 202
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.83 E-value=0.013 Score=54.58 Aligned_cols=117 Identities=8% Similarity=0.018 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHH-HHhcCCChh
Q psy10061 99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEE-LKSDAALTLYSRAAD-VAHGEDNYK 176 (325)
Q Consensus 99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~-~~~~~A~~~y~~Al~-~~~~~~~~~ 176 (325)
.++....++.+|...|++.+|.+.......-....-+...-...+.....+|.. .++.+|...+.++.. .+.....+.
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 455566667777777777777766665532211222333333333333334333 347777777777653 333333444
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH
Q psy10061 177 QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL 215 (325)
Q Consensus 177 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 215 (325)
.....+.-.|.++...++|.+|..+|.++...+...++.
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~ 254 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDE 254 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCH
Confidence 445566667777777777777777777777665554443
No 203
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.78 E-value=0.0016 Score=51.66 Aligned_cols=107 Identities=8% Similarity=-0.074 Sum_probs=76.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHhcCCC---hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHH-----
Q psy10061 145 KGAKSLEELKSDAALTLYSRAADVAHGEDN---YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLL----- 216 (325)
Q Consensus 145 ~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----- 216 (325)
++-.++...-|+.|+-....++.+.....+ +.....++..+|..+...|+|..|...|+++|.+.+.+....
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 334444444488888888887777655433 456677888889999999999999999999888766432110
Q ss_pred --------------HHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCC
Q psy10061 217 --------------AIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEA 251 (325)
Q Consensus 217 --------------~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~ 251 (325)
......+.++.||...+++..|+..++..+.-..+
T Consensus 106 ~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt 154 (167)
T 3ffl_A 106 TGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRT 154 (167)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCC
T ss_pred ccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcC
Confidence 12256688999999999999999999998544433
No 204
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.77 E-value=0.00021 Score=52.41 Aligned_cols=67 Identities=9% Similarity=-0.072 Sum_probs=43.4
Q ss_pred HHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 143 LEKGAKSLEELK-SDAALTLYSRAADVAHGEDN-YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH 209 (325)
Q Consensus 143 l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 209 (325)
+..+|.++...+ |..|+.+|++|+........ ......++..+|.+|.++|++++|+.++++++.+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 445666666555 77777777777766644321 12234677777777777777777777777777653
No 205
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.65 E-value=0.00022 Score=52.25 Aligned_cols=65 Identities=12% Similarity=0.025 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 181 YISRAARMCVRVKEFDKAADLIRQEIGYHQESEH-LLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
-...+|..+...|+|..|+.+|++|+........ ......++..+|.++..+|+++.|..+++++
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3458999999999999999999999998754321 1234467889999999999999999999998
No 206
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.65 E-value=0.00012 Score=52.46 Aligned_cols=58 Identities=12% Similarity=0.068 Sum_probs=35.1
Q ss_pred HHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 146 GAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAE-YISRAARMCVRVKEFDKAADLIRQEIGYH 209 (325)
Q Consensus 146 lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 209 (325)
.|..+...+ +++|+.+|++++++.... .. ++..+|.+|..+|++++|+.+|++++.+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVG------KDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 444444444 666666666666653321 23 56667777777777777777777776653
No 207
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=97.64 E-value=0.029 Score=49.76 Aligned_cols=227 Identities=11% Similarity=0.053 Sum_probs=145.5
Q ss_pred CCCH---HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 53 KPDY---DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATL 129 (325)
Q Consensus 53 ~~~~---~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~ 129 (325)
.++| -+|-+.|.-+.+=|...++|++|++.+...+..+-+.+....+++...-+.++|.+.+-.-. .+...+.+++
T Consensus 25 ~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~-~~~~~rL~~L 103 (336)
T 3lpz_A 25 EGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVD-GASRGKLLGC 103 (336)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHH
T ss_pred CCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Confidence 3888 88999999988889999999999998888877777777666666666666677666542110 1233334444
Q ss_pred HHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH----
Q psy10061 130 FLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGED-NYKQAAEYISRAARMCVRVKEFDKAADLIRQ---- 204 (325)
Q Consensus 130 ~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~---- 204 (325)
+...... .+ .=..+..+|+.+....+ ...+-.+....+|.+|.+-++|.+|..+|--
T Consensus 104 ~~~~~~~-----------------~p-~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~ 165 (336)
T 3lpz_A 104 LRLFQPG-----------------EP-VRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKE 165 (336)
T ss_dssp HTTSCTT-----------------CH-HHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTT
T ss_pred HHhCCCC-----------------Cc-HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCc
Confidence 3333211 11 12445666666666533 2333346778899999999999999888731
Q ss_pred HHHHH-------HHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh--------cc---------------cCCChHH
Q psy10061 205 EIGYH-------QESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW--------GN---------------CCEAPEV 254 (325)
Q Consensus 205 al~~~-------~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~--------~~---------------~~~~~e~ 254 (325)
..+.+ .....+.....+..+.+..|+..++...|...+..+ +. |....--
T Consensus 166 s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLL 245 (336)
T 3lpz_A 166 SPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLL 245 (336)
T ss_dssp HHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHH
T ss_pred hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchH
Confidence 11111 112223344556677888899999999999987765 11 2223334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhcC--hhhhcc----c---HHHHHHhhcCCCC
Q psy10061 255 QTLEKLLQAFDEEDPEGARQALND--PFIKHM----D---VEYSRLARDLPLP 298 (325)
Q Consensus 255 ~~l~~L~~a~~~gd~~~~~~~~~~--~~~~~l----~---~~~~~~~~~l~~~ 298 (325)
.++.-|..+++.+..+.|...+.+ +.++.. . ..+.++-..++.|
T Consensus 246 NFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~~p 298 (336)
T 3lpz_A 246 NFISMLLLSVQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGIQRP 298 (336)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCCCC
Confidence 577778888999999999988876 433332 2 3455555566654
No 208
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.62 E-value=0.0025 Score=62.58 Aligned_cols=200 Identities=10% Similarity=0.080 Sum_probs=136.6
Q ss_pred ccHHHHH-HHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------cCC----
Q psy10061 29 RKKEEGM-EYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYET--------NKS---- 95 (325)
Q Consensus 29 ~~~~eA~-~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~--------~~~---- 95 (325)
++.++|. +.|.+|...... ...++...+.+....|++++|...|.+++..... ...
T Consensus 357 ~~~~~a~r~il~rAi~~~P~-----------s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~ 425 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQCIPN-----------SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESA 425 (679)
T ss_dssp SCCTTHHHHHHHHHHHHCTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred CcHHHHHHHHHHHHHHhCCC-----------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhh
Confidence 4566775 777777654422 1244556677778889999999999999986521 110
Q ss_pred ----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C-HHHHHHHHHHHHHHH
Q psy10061 96 ----AYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL-K-SDAALTLYSRAADVA 169 (325)
Q Consensus 96 ----~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~-~-~~~A~~~y~~Al~~~ 169 (325)
......++...+.+..+.|..+.|...+.+|+....... ...+...+.+-... + ++.|...|+++++.+
T Consensus 426 ~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~-----~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~ 500 (679)
T 4e6h_A 426 INQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT-----PDIYLENAYIEYHISKDTKTACKVLELGLKYF 500 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-----THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred hhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC
Confidence 112445677778888888999999999999976511111 22344555554333 3 899999999999988
Q ss_pred hcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-ccc
Q psy10061 170 HGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNC 248 (325)
Q Consensus 170 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~ 248 (325)
.... ..+...+.+....|+.+.|..+|++++..... ......++......-...|+.+.+....+++ ..|
T Consensus 501 p~~~------~~w~~y~~fe~~~~~~~~AR~lferal~~~~~---~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 501 ATDG------EYINKYLDFLIYVNEESQVKSLFESSIDKISD---SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp TTCH------HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS---TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred CCch------HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7542 34556777888899999999999999875431 1122245555666667789999999999997 555
Q ss_pred CCChH
Q psy10061 249 CEAPE 253 (325)
Q Consensus 249 ~~~~e 253 (325)
.....
T Consensus 572 P~~~~ 576 (679)
T 4e6h_A 572 PEVNK 576 (679)
T ss_dssp TTCCH
T ss_pred CCCcH
Confidence 44433
No 209
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.62 E-value=0.00038 Score=67.11 Aligned_cols=173 Identities=6% Similarity=-0.029 Sum_probs=120.4
Q ss_pred ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHHhcCChHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKS----------FQQCKEYLLKAANCYETNKSAYH 98 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~----------~~~A~~~~~~a~~~~~~~~~~~~ 98 (325)
...++|++++.++.... +++.. ++..=+.+....++ +++++.++.+++....+.
T Consensus 43 ~~~eeal~~~~~~l~~n--------P~~~t---aW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~----- 106 (567)
T 1dce_A 43 ELDESVLELTSQILGAN--------PDFAT---LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS----- 106 (567)
T ss_dssp CCSHHHHHHHHHHHHHC--------TTCHH---HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC-----
T ss_pred CCCHHHHHHHHHHHHHC--------chhHH---HHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC-----
Confidence 34567788888887655 22222 23333445555555 899999999998766543
Q ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHhcCCC
Q psy10061 99 AAKHLEQAIMMCKELN--DLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK--SDAALTLYSRAADVAHGEDN 174 (325)
Q Consensus 99 aa~~~~~~~~~y~~~g--~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~--~~~A~~~y~~Al~~~~~~~~ 174 (325)
..++..-+.+....+ +++++++++.+++++..+ ++ .++...+.++...+ ++++++++.++++.....
T Consensus 107 -y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~--N~----~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n-- 177 (567)
T 1dce_A 107 -YGTWHHRCWLLSRLPEPNWARELELCARFLEADER--NF----HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN-- 177 (567)
T ss_dssp -HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC--
T ss_pred -HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc--cc----cHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC--
Confidence 346777788888899 779999999999986432 33 25777777777665 899999999998754332
Q ss_pred hhhHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHH
Q psy10061 175 YKQAAEYISRAARMCVRV--------------KEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTV 236 (325)
Q Consensus 175 ~~~~~~~~~~lg~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~ 236 (325)
..++...+.++..+ +.++++++++.+++.+.+... .+|+..+.++...+.+.
T Consensus 178 ----~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~------saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 178 ----YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ------SAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp ----HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCS------HHHHHHHHHHSCCCCCS
T ss_pred ----ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCc------cHHHHHHHHHhcCCCcc
Confidence 35788888888775 668999999999998744321 24555677776666633
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.62 E-value=0.00044 Score=49.34 Aligned_cols=57 Identities=7% Similarity=0.004 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHH-HHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 183 SRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGR-LAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 183 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
...|.++...|++++|+..|++++.+.+.. .. +++.+|.++...|++++|..+|+++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVG------KDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 467899999999999999999998863221 23 6788999999999999999999998
No 211
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.54 E-value=0.0049 Score=54.48 Aligned_cols=152 Identities=8% Similarity=-0.040 Sum_probs=110.0
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061 70 FKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELN--DLTDVENLAKQAATLFLEQGNREAASTVLEKGA 147 (325)
Q Consensus 70 y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g--~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg 147 (325)
.......++|+.++.+++.+.... ..+++.-+.+...++ ++++++.++.+++.+..+.-. +++.-+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~------~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~------aW~~R~ 110 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASH------YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ------IWNYRQ 110 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH------HHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHH------HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH------HHHHHH
Confidence 334444567888888887766543 335666677888888 999999999999876443322 344444
Q ss_pred HHH----hcc---C-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHcccHHH
Q psy10061 148 KSL----EEL---K-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFD--KAADLIRQEIGYHQESEHLLA 217 (325)
Q Consensus 148 ~~~----~~~---~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~~~~~~~~~~~ 217 (325)
.++ ... . +++++.++.++++...+. ..++...+.+....|.++ ++++++.+++++... ++
T Consensus 111 ~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn------y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~--N~-- 180 (306)
T 3dra_A 111 LIIGQIMELNNNDFDPYREFDILEAMLSSDPKN------HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK--NN-- 180 (306)
T ss_dssp HHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT--CH--
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC--CH--
Confidence 444 333 3 899999999999876543 358888999999999999 999999999875322 22
Q ss_pred HHHHHHHHHHHHHhcCC------HHHHHHHHHhh
Q psy10061 218 IGRLAVALVLVQLARGD------TVAAEKAFKEW 245 (325)
Q Consensus 218 ~~~~~~~lg~~~~~~gd------~~~A~~~~~~~ 245 (325)
.++...+.+....|+ ++++++++.++
T Consensus 181 --sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~a 212 (306)
T 3dra_A 181 --SAWSHRFFLLFSKKHLATDNTIDEELNYVKDK 212 (306)
T ss_dssp --HHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhccccchhhhHHHHHHHHHHH
Confidence 355666777777776 88999999886
No 212
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.013 Score=54.51 Aligned_cols=107 Identities=12% Similarity=0.092 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-ccHH
Q psy10061 139 ASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLL 216 (325)
Q Consensus 139 aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~ 216 (325)
-++....++.+|+..+ +.+|...++....-.....+.....+.+.....+|...++|.+|...+.++....... ..+.
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 4566778999999887 9999999988764444455666667888899999999999999999999986544433 4566
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 217 AIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 217 ~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
....++...|.++...++|.+|..+|.++
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 67788899999999999999999999986
No 213
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.51 E-value=0.0034 Score=49.76 Aligned_cols=103 Identities=16% Similarity=0.044 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCCh--
Q psy10061 102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGN---REAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY-- 175 (325)
Q Consensus 102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~---~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~-- 175 (325)
++..-.......+.|+.|+-....++.+.....+ +...++++..+|+.+...+ |..|...|++|+.+.+...+.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444444445567888888888888777665544 5677777888888877766 888888888888877643211
Q ss_pred -----------------hhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10061 176 -----------------KQAAEYISRAARMCVRVKEFDKAADLIRQ 204 (325)
Q Consensus 176 -----------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 204 (325)
....++..+++.+|.+++++.+|+..++.
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 12347888999999999999999988653
No 214
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.43 E-value=0.0054 Score=58.11 Aligned_cols=169 Identities=11% Similarity=0.036 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHHH---HcCC
Q psy10061 61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDV--ENLAKQAATLFL---EQGN 135 (325)
Q Consensus 61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA--~~~~~~A~~~~~---~~g~ 135 (325)
..+..+.+.+.+.|+.++|...|.++.+.--.. -..+|+.+..+|...+...++ ....++|.+++. ..|-
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-----d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~ 101 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQL-----SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKV 101 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCC-----CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-----CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCC
Confidence 367777777778888888888777765432111 134677777777666543211 111233333332 2333
Q ss_pred HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q psy10061 136 REAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH 214 (325)
Q Consensus 136 ~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 214 (325)
... ..+|+.+-..|-..+ .++|...+++... .|-... ..+|+.+-..|.+.|+.++|.++|++..+ .|-
T Consensus 102 ~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~----~g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~----~G~ 171 (501)
T 4g26_A 102 VPN-EATFTNGARLAVAKDDPEMAFDMVKQMKA----FGIQPR-LRSYGPALFGFCRKGDADKAYEVDAHMVE----SEV 171 (501)
T ss_dssp CCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----TTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTC
T ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCc-cceehHHHHHHHHCCCHHHHHHHHHHHHh----cCC
Confidence 222 235556666665555 7777777665432 222122 24666777777777777777777766543 121
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 215 LLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 215 ~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
... ..+|..+..+|...|+.++|.+.|++.
T Consensus 172 ~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 172 VPE-EPELAALLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp CCC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 111 135566777777777777777777775
No 215
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.34 E-value=0.0038 Score=56.09 Aligned_cols=188 Identities=9% Similarity=-0.051 Sum_probs=116.2
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy10061 67 ATCFKGAK-SFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKEL-N-DLTDVENLAKQAATLFLEQGNREAASTVL 143 (325)
Q Consensus 67 ~~~y~~~g-~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~-g-~~~eA~~~~~~A~~~~~~~g~~~~aa~~l 143 (325)
+.+...++ .+++++.++..++....+. ..++..-+.+.... + ++++++.++.++++... .++. ++
T Consensus 95 ~~iL~~l~~~l~eEL~~~~~~L~~nPKn------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp--kNy~----AW 162 (349)
T 3q7a_A 95 FSLLTSLNKSLEDELRLMNEFAVQNLKS------YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP--KNYH----TW 162 (349)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT--TCHH----HH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC--CCHH----HH
Confidence 34556677 5999999999988665443 23555556666666 6 88899999999885422 2222 34
Q ss_pred HHHHHHHhccC---------HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHH
Q psy10061 144 EKGAKSLEELK---------SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE-------FDKAADLIRQEIG 207 (325)
Q Consensus 144 ~~lg~~~~~~~---------~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~al~ 207 (325)
..-+-++...+ ..++++++.++++....+ ..+++..+.++...++ ++++++++++++.
T Consensus 163 ~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N------~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~ 236 (349)
T 3q7a_A 163 AYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN------NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH 236 (349)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence 44444444332 348999999998865443 3588889999988887 7899999999988
Q ss_pred HHHHcccHHHHHHHHHHHHHHHHhcCCH--------------------HHHHHHHHhh-ccc----CCChHHHHHHHHHH
Q psy10061 208 YHQESEHLLAIGRLAVALVLVQLARGDT--------------------VAAEKAFKEW-GNC----CEAPEVQTLEKLLQ 262 (325)
Q Consensus 208 ~~~~~~~~~~~~~~~~~lg~~~~~~gd~--------------------~~A~~~~~~~-~~~----~~~~e~~~l~~L~~ 262 (325)
+.+... .+++.+.-++...|.. ..-.+...++ ..- ....-..++.-|++
T Consensus 237 ~~P~n~------SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d 310 (349)
T 3q7a_A 237 LIPHNV------SAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLAD 310 (349)
T ss_dssp HCTTCH------HHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHH
T ss_pred hCCCCH------HHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHH
Confidence 643321 1333444455544442 1122222222 110 01223457778888
Q ss_pred HH-hcCCHHHHHHHhcC
Q psy10061 263 AF-DEEDPEGARQALND 278 (325)
Q Consensus 263 a~-~~gd~~~~~~~~~~ 278 (325)
.+ +.|+.+.+.+++..
T Consensus 311 ~~~~~~~~~~a~~~~~~ 327 (349)
T 3q7a_A 311 SFIEQNRVDDAAKVFEK 327 (349)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHH
Confidence 87 58888888888765
No 216
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.28 E-value=0.0026 Score=61.22 Aligned_cols=146 Identities=6% Similarity=-0.096 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10061 76 FQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELND----------LTDVENLAKQAATLFLEQGNREAASTVLEK 145 (325)
Q Consensus 76 ~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~----------~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~ 145 (325)
.++|++.+.+++.+..+. ..++..-+.+....|+ +++++.++++++.... .++ .++..
T Consensus 45 ~eeal~~~~~~l~~nP~~------~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p--K~y----~aW~h 112 (567)
T 1dce_A 45 DESVLELTSQILGANPDF------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--KSY----GTWHH 112 (567)
T ss_dssp SHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT--TCH----HHHHH
T ss_pred CHHHHHHHHHHHHHCchh------HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC--CCH----HHHHH
Confidence 356788888877665543 2345555666666666 8899999999886532 222 35777
Q ss_pred HHHHHhccC---HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcccHHHHHHH
Q psy10061 146 GAKSLEELK---SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVK-EFDKAADLIRQEIGYHQESEHLLAIGRL 221 (325)
Q Consensus 146 lg~~~~~~~---~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~ 221 (325)
-+.++...+ +++++.++.+++++..+. ..++...+.+....| .++++++++.++++.... +. .+
T Consensus 113 R~w~l~~l~~~~~~~el~~~~k~l~~d~~N------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~--n~----sa 180 (567)
T 1dce_A 113 RCWLLSRLPEPNWARELELCARFLEADERN------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS--NY----SS 180 (567)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC--CH----HH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHhhcccc------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC--Cc----cH
Confidence 777777665 699999999999976543 358888999999999 999999999999875322 11 24
Q ss_pred HHHHHHHHHhc--------------CCHHHHHHHHHhh
Q psy10061 222 AVALVLVQLAR--------------GDTVAAEKAFKEW 245 (325)
Q Consensus 222 ~~~lg~~~~~~--------------gd~~~A~~~~~~~ 245 (325)
|+..+.++... +.++++++++.++
T Consensus 181 W~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~a 218 (567)
T 1dce_A 181 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA 218 (567)
T ss_dssp HHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHH
Confidence 55566666553 5578899998887
No 217
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.28 E-value=0.01 Score=56.14 Aligned_cols=95 Identities=9% Similarity=0.076 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHH
Q psy10061 101 KHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAA 179 (325)
Q Consensus 101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~ 179 (325)
.+|+.+...|.+.|++++|...+++.. +.|-... ..+|+.+-..|-..+ .++|.+.+.+..+ .|-... .
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~----~~g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~----~G~~Pd-~ 175 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMK----AFGIQPR-LRSYGPALFGFCRKGDADKAYEVDAHMVE----SEVVPE-E 175 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH----HTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCCCC-H
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCc-cceehHHHHHHHHCCCHHHHHHHHHHHHh----cCCCCC-H
Confidence 356666666666666666665555542 2221111 223444444444444 6666665555432 121111 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQE 205 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~a 205 (325)
.+|..+-..|.+.|+.++|.+++++.
T Consensus 176 ~ty~~Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 176 PELAALLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 35555666666666666666665554
No 218
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.25 E-value=0.045 Score=48.75 Aligned_cols=180 Identities=9% Similarity=-0.019 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Q psy10061 76 FQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELN--DLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL 153 (325)
Q Consensus 76 ~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g--~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~ 153 (325)
+++++.++..++....+. ..++..-+.+....+ .+++++.++.+++++.. .++. ++..-+.++...
T Consensus 90 l~~EL~~~~~~L~~~PKn------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp--rNy~----AW~~R~~vl~~l 157 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKS------YGTWHHRCWLLSRLPEPNWARELELCARFLEADE--RNFH----CWDYRRFVAAQA 157 (331)
T ss_dssp HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT--TCHH----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC--CCHH----HHHHHHHHHHHh
Confidence 567777777776655432 235555667777777 48999999999987532 3333 566667777766
Q ss_pred C--HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHcccHHH
Q psy10061 154 K--SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRV--------------KEFDKAADLIRQEIGYHQESEHLLA 217 (325)
Q Consensus 154 ~--~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~ 217 (325)
+ ++++++++.++++....+ ..+++..+.++... +.++++++++.+++.+.+...+
T Consensus 158 ~~~~~eel~~~~~~I~~~p~N------~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~S--- 228 (331)
T 3dss_A 158 AVAPAEELAFTDSLITRNFSN------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS--- 228 (331)
T ss_dssp TCCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHH---
T ss_pred CcCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHH---
Confidence 5 699999999999865443 25777888887776 5688999999999887544322
Q ss_pred HHHHHHHHHHHHHhcC----------CHHHHHHHHHhh-cccCCC-hHHHHHHHHHHHHh-cCCHHHHHHHhcC
Q psy10061 218 IGRLAVALVLVQLARG----------DTVAAEKAFKEW-GNCCEA-PEVQTLEKLLQAFD-EEDPEGARQALND 278 (325)
Q Consensus 218 ~~~~~~~lg~~~~~~g----------d~~~A~~~~~~~-~~~~~~-~e~~~l~~L~~a~~-~gd~~~~~~~~~~ 278 (325)
+..| ..|++....| -++++++++++. ..-.+. .-...+..+.+.++ .+..+...+.+.+
T Consensus 229 -aW~Y-~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~ 300 (331)
T 3dss_A 229 -AWFY-HRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST 300 (331)
T ss_dssp -HHHH-HHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHH
T ss_pred -HHHH-HHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 1221 2333333333 367888888886 222222 11122223333443 5666666666655
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.19 E-value=0.0041 Score=56.09 Aligned_cols=143 Identities=10% Similarity=-0.021 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHH
Q psy10061 54 PDYDSAADDYSKAATCFKG--AKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCK----ELNDLTDVENLAKQAA 127 (325)
Q Consensus 54 ~~~~~A~~~y~~a~~~y~~--~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~----~~g~~~eA~~~~~~A~ 127 (325)
+.-..|-++|-++-..... ..++.+|+.+|++|+++-... +.++..++.+|. ..+.....+.....+.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~------a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~ 264 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEF------TYARAEKALVDIVRHSQHPLDEKQLAALNTEI 264 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 4446777888776544332 234578888888888776543 223333333332 1111122223333444
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061 128 TLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEI 206 (325)
Q Consensus 128 ~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 206 (325)
...........-+.++.-++.++...+ +++|+..+++|+.+- .+ ...+.-+|.++...|++++|++.|.+|+
T Consensus 265 ~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s----~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 265 DNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MS----WLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp HHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 433333223334556777776665445 999999999999883 11 2466778999999999999999999998
Q ss_pred HHH
Q psy10061 207 GYH 209 (325)
Q Consensus 207 ~~~ 209 (325)
.+.
T Consensus 338 rL~ 340 (372)
T 3ly7_A 338 NLR 340 (372)
T ss_dssp HHS
T ss_pred hcC
Confidence 873
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.15 E-value=0.016 Score=52.21 Aligned_cols=143 Identities=11% Similarity=-0.032 Sum_probs=88.8
Q ss_pred hhhHHHHHHhhchhccccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHH----HhcCCHHHHHHHHH
Q psy10061 9 EGMEYVKSAEKHSLSTMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCF----KGAKSFQQCKEYLL 84 (325)
Q Consensus 9 ~~~~~~~~ae~~~~~~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y----~~~g~~~~A~~~~~ 84 (325)
+|-+++-+|...+..+ ....+.+|+.+|++|.++- |+|..|.. .++.+| ..............
T Consensus 195 ~Aydl~Lra~~~l~~~--~~~~~~~A~~l~e~Al~lD--------P~~a~A~A---~la~a~~~~~~~~~~~~~~~~~l~ 261 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHG--DDKSLNRASELLGEIVQSS--------PEFTYARA---EKALVDIVRHSQHPLDEKQLAALN 261 (372)
T ss_dssp GGHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHC--------TTCHHHHH---HHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhC--------CCCHHHHH---HHHHHHHHHhccCCCchhhHHHHH
Confidence 3445555554433321 1245778888888887655 44433321 112222 12212223334444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHH
Q psy10061 85 KAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYS 163 (325)
Q Consensus 85 ~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~ 163 (325)
++......+......+.++.-++.++...|++++|+.++++|+.+- .+ +..+..+|.++...| +++|++.|.
T Consensus 262 ~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s----~~a~~llG~~~~~~G~~~eA~e~~~ 334 (372)
T 3ly7_A 262 TEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MS----WLNYVLLGKVYEMKGMNREAADAYL 334 (372)
T ss_dssp HHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CC----HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CC----HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4444333333334456678888888887899999999999999883 22 346788999999888 999999999
Q ss_pred HHHHHHhc
Q psy10061 164 RAADVAHG 171 (325)
Q Consensus 164 ~Al~~~~~ 171 (325)
+|+.+-..
T Consensus 335 ~AlrL~P~ 342 (372)
T 3ly7_A 335 TAFNLRPG 342 (372)
T ss_dssp HHHHHSCS
T ss_pred HHHhcCCC
Confidence 99988543
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.09 E-value=0.012 Score=46.15 Aligned_cols=80 Identities=15% Similarity=0.052 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHH
Q psy10061 179 AEYISRAARMCVRVK---EFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEV 254 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~ 254 (325)
.++..++|+++++.+ +..+++.+++..+... .+.....+++.+++.|...|||.+|.++++++ ..-++..++
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 468889999999998 6669999999887742 23344568889999999999999999999998 444455667
Q ss_pred HHHHHHHH
Q psy10061 255 QTLEKLLQ 262 (325)
Q Consensus 255 ~~l~~L~~ 262 (325)
..|..+++
T Consensus 108 ~~Lk~~ie 115 (152)
T 1pc2_A 108 KELERLID 115 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
No 222
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.08 E-value=0.024 Score=50.85 Aligned_cols=220 Identities=9% Similarity=-0.041 Sum_probs=128.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Q psy10061 53 KPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELN-DLTDVENLAKQAATLFL 131 (325)
Q Consensus 53 ~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g-~~~eA~~~~~~A~~~~~ 131 (325)
.++|..+... ...+....+..++|++++.+++.+..+. ..+++.-+.+...++ ++++++.++.+++....
T Consensus 50 ~~~y~~~~~~---~r~~~~~~e~se~AL~lt~~~L~~nP~~------ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP 120 (349)
T 3q7a_A 50 SEEYKDAMDY---FRAIAAKEEKSERALELTEIIVRMNPAH------YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL 120 (349)
T ss_dssp CHHHHHHHHH---HHHHHHTTCCSHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHH---HHHHHHhCCCCHHHHHHHHHHHHhCchh------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC
Confidence 4555544443 3344555666678888888887776543 235556667777788 59999999999875432
Q ss_pred HcCCHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHH--------HHHH
Q psy10061 132 EQGNREAASTVLEKGAKSLEEL---KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFD--------KAAD 200 (325)
Q Consensus 132 ~~g~~~~aa~~l~~lg~~~~~~---~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~--------~A~~ 200 (325)
.++ .+++.-+.++... ++++++.++.+++++..+. ..++...+.+....|.++ ++++
T Consensus 121 --Kny----~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN------y~AW~~R~wvl~~l~~~~~~~~~~~~eELe 188 (349)
T 3q7a_A 121 --KSY----QVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN------YHTWAYLHWLYSHFSTLGRISEAQWGSELD 188 (349)
T ss_dssp --CCH----HHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC------HHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred --CcH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhccccccchhhHHHHHH
Confidence 222 2566666666654 4889999999998654332 357788888888888887 8999
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCC-------HHHHHHHHHhh-cccCCCh-HHHHHHHHHHHHhcCCHHH
Q psy10061 201 LIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD-------TVAAEKAFKEW-GNCCEAP-EVQTLEKLLQAFDEEDPEG 271 (325)
Q Consensus 201 ~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd-------~~~A~~~~~~~-~~~~~~~-e~~~l~~L~~a~~~gd~~~ 271 (325)
++++++++... +. .++...+.+....++ ++++++++.++ ....... -..-+..|......+..+-
T Consensus 189 ~~~k~I~~dp~--N~----SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~ 262 (349)
T 3q7a_A 189 WCNEMLRVDGR--NN----SAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPI 262 (349)
T ss_dssp HHHHHHHHCTT--CH----HHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHhCCC--CH----HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccc
Confidence 99998885322 11 356677778777776 68888888886 2222121 2234445544443332222
Q ss_pred HHHHhcC--hhhhcccHHHHHHhhcCCCCC
Q psy10061 272 ARQALND--PFIKHMDVEYSRLARDLPLPS 299 (325)
Q Consensus 272 ~~~~~~~--~~~~~l~~~~~~~~~~l~~~~ 299 (325)
....+-. +.+....+.+...+.++...+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (349)
T 3q7a_A 263 LPAILPYTASKLNPDIETVEAFGFPMPSDP 292 (349)
T ss_dssp HHHHGGGTC--------------CCCCC-C
T ss_pred cccccccccccccccchhHHHHHHHHHhcc
Confidence 2333322 222233356666777765543
No 223
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.05 E-value=0.033 Score=49.61 Aligned_cols=155 Identities=8% Similarity=-0.055 Sum_probs=100.2
Q ss_pred HHHHHhcC--CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy10061 67 ATCFKGAK--SFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELND-LTDVENLAKQAATLFLEQGNREAASTVL 143 (325)
Q Consensus 67 ~~~y~~~g--~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~-~~eA~~~~~~A~~~~~~~g~~~~aa~~l 143 (325)
+.+....+ ++++++.++.++++...+. ..++..-+.+....|. ++++++++.++++.. -.++. ++
T Consensus 115 ~wlL~~l~~~~~~~EL~~~~k~l~~dprN------y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~S----AW 182 (331)
T 3dss_A 115 CWLLSRLPEPNWARELELCARFLEADERN------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYS----SW 182 (331)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHH----HH
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHH----HH
Confidence 44555666 4899999999998866543 2356666677777888 689999999998652 33433 45
Q ss_pred HHHHHHHhcc--------------C-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHc-----------CCHHH
Q psy10061 144 EKGAKSLEEL--------------K-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRV-----------KEFDK 197 (325)
Q Consensus 144 ~~lg~~~~~~--------------~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~-----------g~~~~ 197 (325)
+..+.++... + ++++++++.+++.+.+.. ..+++.+..++... +.+++
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d------~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~ 256 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND------QSAWFYHRWLLGAGSGRCELSVEKSTVLQS 256 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHSSSCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhccCccccchHHHHHHHH
Confidence 5555554433 3 889999999999877654 23555454444444 45778
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH---hcCCHHHHHHHHHhh
Q psy10061 198 AADLIRQEIGYHQESEHLLAIGRLAVALVLVQL---ARGDTVAAEKAFKEW 245 (325)
Q Consensus 198 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~---~~gd~~~A~~~~~~~ 245 (325)
+++.+.+.+++.+.. . .++..++.+.. ..|...+....+.+.
T Consensus 257 el~~~~elle~~pd~--~----w~l~~~~~~~~~~~~~~~~~~~~~~l~~l 301 (331)
T 3dss_A 257 ELESCKELQELEPEN--K----WCLLTIILLMRALDPLLYEKETLQYFSTL 301 (331)
T ss_dssp HHHHHHHHHHHCTTC--H----HHHHHHHHHHHHHCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCccc--c----hHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 888888888875532 1 23333333322 246666777777765
No 224
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=96.52 E-value=0.38 Score=42.29 Aligned_cols=176 Identities=11% Similarity=0.063 Sum_probs=120.9
Q ss_pred cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061 28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI 107 (325)
Q Consensus 28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~ 107 (325)
.|+|=||.++++--..-+.+ +++|++|++.....+..+...|++.-+.+.-.-.++++.+.+.... .....++.
T Consensus 26 ~G~yYEAhQ~~Rtl~~Ry~~-----~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~-~~~~~rl~ 99 (312)
T 2wpv_A 26 AGDYYEAHQTLRTIANRYVR-----SKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVD-DISVARLV 99 (312)
T ss_dssp HTCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCS-HHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Confidence 36888999999986554444 4899999999999999999999999999999889999998764432 33566777
Q ss_pred HHHHHcCCHH-HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhccC-HHHHHHHHH------------HHHHHHhcC
Q psy10061 108 MMCKELNDLT-DVENLAKQAATLFLEQGN-REAASTVLEKGAKSLEELK-SDAALTLYS------------RAADVAHGE 172 (325)
Q Consensus 108 ~~y~~~g~~~-eA~~~~~~A~~~~~~~g~-~~~aa~~l~~lg~~~~~~~-~~~A~~~y~------------~Al~~~~~~ 172 (325)
.++.....-+ +=..+.++|+....+.|. ..+-...+..+|..|-..+ +.+|..+|- --.+++...
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~ 179 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQV 179 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhc
Confidence 7776644222 224566777777766543 2333457888888888766 877888773 112333332
Q ss_pred --CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 173 --DNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH 209 (325)
Q Consensus 173 --~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 209 (325)
+.+....-...+...-|...|+...|...++.-....
T Consensus 180 ~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~ 218 (312)
T 2wpv_A 180 DDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERF 218 (312)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 4433333223444456778899999999988766654
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.48 E-value=0.028 Score=39.99 Aligned_cols=61 Identities=10% Similarity=-0.006 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 179 AEYISRAARMCVRVKE---FDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
...+..+|.+++..++ .++|..++++++.+-+.. ..++..+|.+++..|+|.+|+.+|++.
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~------~rA~~~lg~~~~~~g~y~~Ai~~w~~~ 69 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN------EAALSLIANDHFISFRFQEAIDTWVLL 69 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3577788888876665 799999999999863321 135567899999999999999999997
No 226
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.036 Score=51.29 Aligned_cols=111 Identities=11% Similarity=0.138 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChhhH
Q psy10061 99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQA 178 (325)
Q Consensus 99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~ 178 (325)
...++..+|..|.+.|++++|.++|.++.+.....+.. .-.++..+...+...++..+..++.++..+....+++...
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~k--id~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAK--IDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSH--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHH--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 44567788888889999999999998877655444432 2334444444444556888888999988888777776666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 211 (325)
.......|.++...++|.+|..+|.+++..+..
T Consensus 208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 556666777888888999999888877665433
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.42 E-value=0.014 Score=41.64 Aligned_cols=65 Identities=18% Similarity=0.076 Sum_probs=50.6
Q ss_pred HHHHHHHHHHh-cc-C--HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 141 TVLEKGAKSLE-EL-K--SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 141 ~~l~~lg~~~~-~~-~--~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 211 (325)
..+..+|.++. .. + .++|..++++|+.+-... ..++..+|.++.+.|+|++|+.+++++++..+.
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN------EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34556666653 22 2 799999999999976543 357778999999999999999999999876544
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.41 E-value=0.046 Score=54.09 Aligned_cols=106 Identities=15% Similarity=0.064 Sum_probs=72.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHHHcCCHHHHHHH
Q psy10061 69 CFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQA------ATLFLEQGNREAASTV 142 (325)
Q Consensus 69 ~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A------~~~~~~~g~~~~aa~~ 142 (325)
+...+|++++|.+. .+.+.+. ..+.++|..+.+.++++.|+.+|.++ ..++...|+...
T Consensus 661 ~~l~~~~~~~A~~~-------~~~~~~~----~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~---- 725 (814)
T 3mkq_A 661 LALKVGQLTLARDL-------LTDESAE----MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEG---- 725 (814)
T ss_dssp HHHHHTCHHHHHHH-------HTTCCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHH----
T ss_pred hhhhcCCHHHHHHH-------HHhhCcH----hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHH----
Confidence 44567777776664 4445443 47889999999999999999999885 445666777653
Q ss_pred HHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061 143 LEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIR 203 (325)
Q Consensus 143 l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 203 (325)
+.+++.+....+ +..|..+|.+. |+... ...+|.+.+++++|+.+-+
T Consensus 726 ~~~~~~~a~~~~~~~~A~~~~~~~-------g~~~~-------a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 726 LVTLAKDAETTGKFNLAFNAYWIA-------GDIQG-------AKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-------TCHHH-------HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHc-------CCHHH-------HHHHHHHcCChHHHHHHHH
Confidence 556777777666 77777666542 44333 3445678888888887654
No 229
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.02 Score=53.09 Aligned_cols=108 Identities=9% Similarity=-0.008 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHH
Q psy10061 139 ASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLA 217 (325)
Q Consensus 139 aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 217 (325)
...++..+|..|...| ++.|+++|.++.+.....+. ..+.+..+..++...++|..+..++.++..+....+++..
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~---kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~ 206 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA---KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWER 206 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH---HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHH
Confidence 3456788999999887 99999999999887766543 3467778888999999999999999999888777777766
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccC
Q psy10061 218 IGRLAVALVLVQLARGDTVAAEKAFKEW-GNCC 249 (325)
Q Consensus 218 ~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~ 249 (325)
...+....|.+++..++|..|...|.+. ..|.
T Consensus 207 ~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 207 RNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 7777788899999999999999999986 5554
No 230
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.22 E-value=0.48 Score=46.69 Aligned_cols=107 Identities=10% Similarity=-0.002 Sum_probs=60.6
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHH------HHHHhcCCChhhHHHHH
Q psy10061 110 CKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRA------ADVAHGEDNYKQAAEYI 182 (325)
Q Consensus 110 y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~A------l~~~~~~~~~~~~~~~~ 182 (325)
....|++++|.+.. +...+. ..+.++|..+...+ ++.|..+|.++ ..++...++. +-+
T Consensus 662 ~l~~~~~~~A~~~~-------~~~~~~----~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~----~~~ 726 (814)
T 3mkq_A 662 ALKVGQLTLARDLL-------TDESAE----MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNK----EGL 726 (814)
T ss_dssp HHHHTCHHHHHHHH-------TTCCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCH----HHH
T ss_pred hhhcCCHHHHHHHH-------HhhCcH----hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCH----HHH
Confidence 44557777775543 222332 25666666666554 66666666553 4444444443 234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 183 SRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 183 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
..++.+....|++..|...|.+. +++. ....+|...+++++|...-++.
T Consensus 727 ~~~~~~a~~~~~~~~A~~~~~~~-------g~~~-------~a~~~~~~~~~~~~A~~lA~~~ 775 (814)
T 3mkq_A 727 VTLAKDAETTGKFNLAFNAYWIA-------GDIQ-------GAKDLLIKSQRFSEAAFLGSTY 775 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-------TCHH-------HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCchHHHHHHHHHc-------CCHH-------HHHHHHHHcCChHHHHHHHHHh
Confidence 46677777777777776665431 2221 2344566677777777777775
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.13 E-value=0.18 Score=43.76 Aligned_cols=82 Identities=12% Similarity=0.112 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q psy10061 155 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRV-----KEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQ 229 (325)
Q Consensus 155 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~ 229 (325)
...|...+++|+++-+. .....++..+|.+|... |+.++|..+|++++++.+..+ ...++..|..+
T Consensus 179 l~~A~a~lerAleLDP~----~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~-----id~~v~YA~~l 249 (301)
T 3u64_A 179 VHAAVMMLERACDLWPS----YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD-----PDHHITYADAL 249 (301)
T ss_dssp HHHHHHHHHHHHHHCTT----HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC-----SHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCC----cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC-----chHHHHHHHHH
Confidence 67888999999988544 22346889999999995 999999999999999854211 12334567777
Q ss_pred Hh-cCCHHHHHHHHHhh
Q psy10061 230 LA-RGDTVAAEKAFKEW 245 (325)
Q Consensus 230 ~~-~gd~~~A~~~~~~~ 245 (325)
.. +||+..|..+++++
T Consensus 250 ~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 250 CIPLNNRAGFDEALDRA 266 (301)
T ss_dssp TTTTTCHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHH
Confidence 66 59999999999997
No 232
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.0094 Score=55.99 Aligned_cols=200 Identities=14% Similarity=0.073 Sum_probs=99.6
Q ss_pred hcCCHHHHHHHHHHHH--HHHHhcCC---hHHHHHHHHHHHHHHHHcCCHHHHH-------HHHHHHHHHHHH---cCCH
Q psy10061 72 GAKSFQQCKEYLLKAA--NCYETNKS---AYHAAKHLEQAIMMCKELNDLTDVE-------NLAKQAATLFLE---QGNR 136 (325)
Q Consensus 72 ~~g~~~~A~~~~~~a~--~~~~~~~~---~~~aa~~~~~~~~~y~~~g~~~eA~-------~~~~~A~~~~~~---~g~~ 136 (325)
..++++++.++-.... ......+. ..-++++|.=.+.+|...|+..+.. ..-...+..++. ..|.
T Consensus 148 d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~ 227 (523)
T 4b4t_S 148 DSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDN 227 (523)
T ss_dssp -------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSS
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCc
Confidence 3456777666655443 12221111 1224555555555666656554322 111222333443 3567
Q ss_pred HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc-
Q psy10061 137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE-DNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE- 213 (325)
Q Consensus 137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~- 213 (325)
.+.+..++.+-..|...+ |++|..+..++. +... ......+..+..+|.++.-+++|.+|.+++..|+..++...
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 788889998888888877 999999999884 4433 23334456677899999999999999999999987655332
Q ss_pred cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCCh-HHHHHHHHHHHHhcCCHHHHHHHhcC
Q psy10061 214 HLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAP-EVQTLEKLLQAFDEEDPEGARQALND 278 (325)
Q Consensus 214 ~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~-e~~~l~~L~~a~~~gd~~~~~~~~~~ 278 (325)
.......++--+..|.+-+|+.+. ...|.+. ... ....-..|..|+..||...|...+.+
T Consensus 306 a~gfr~~a~K~lI~V~LLlG~iP~-r~lf~q~----~l~~~L~pY~~Lv~Avr~GdL~~F~~~L~~ 366 (523)
T 4b4t_S 306 SLGFLQQSNKLHCCIQLLMGDIPE-LSFFHQS----NMQKSLLPYYHLTKAVKLGDLKKFTSTITK 366 (523)
T ss_dssp CSHHHHHHHHHHHHHHHHHTCCCC-HHHHTTT----SCHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhHHhhcCCCCC-hHHhhch----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 112222344456667666788664 2223222 111 12233468889999999999999875
No 233
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.45 E-value=0.24 Score=38.68 Aligned_cols=67 Identities=18% Similarity=0.150 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhccC----HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 140 STVLEKGAKSLEELK----SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 140 a~~l~~lg~~~~~~~----~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 210 (325)
..+..++|..+...+ .++++.++++.++.. .+....+++.++|..|.++|+|++|..+++++|++-+
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP 102 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 346777888777654 679999999987742 2334468999999999999999999999999999744
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.32 E-value=0.15 Score=38.46 Aligned_cols=81 Identities=14% Similarity=0.025 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHH
Q psy10061 179 AEYISRAARMCVRVKEFDK---AADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEV 254 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~ 254 (325)
..+..++|+.++...+... ++.+++..+.. +.+...-.+++.+++.++..|+|.+|..+++.. ..-++..++
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~----~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 3677899999999887776 67666654432 224345567888999999999999999999998 445566778
Q ss_pred HHHHHHHHH
Q psy10061 255 QTLEKLLQA 263 (325)
Q Consensus 255 ~~l~~L~~a 263 (325)
..|..+++-
T Consensus 111 ~~Lk~~i~~ 119 (126)
T 1nzn_A 111 KELERLIDK 119 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776653
No 235
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.28 E-value=1 Score=34.04 Aligned_cols=80 Identities=9% Similarity=0.028 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHH
Q psy10061 179 AEYISRAARMCVRVKEFD---KAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEV 254 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~ 254 (325)
..+..++++.+++..+.. +++.+++..+. . ++.....+++-+++.+...|+|..|..+.+.. ..-.+..++
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~---~--~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK---E--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH---H--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh---c--CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 467889999999887554 57777766543 2 23234467788999999999999999999998 555677788
Q ss_pred HHHHHHHHH
Q psy10061 255 QTLEKLLQA 263 (325)
Q Consensus 255 ~~l~~L~~a 263 (325)
..|..+++-
T Consensus 115 ~~Lk~~Ie~ 123 (134)
T 3o48_A 115 GALKSMVED 123 (134)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777653
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.23 E-value=1.5 Score=35.02 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=17.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhc
Q psy10061 224 ALVLVQLARGDTVAAEKAFKEWG 246 (325)
Q Consensus 224 ~lg~~~~~~gd~~~A~~~~~~~~ 246 (325)
....+++..||++++.+.|.+..
T Consensus 94 ~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 94 SMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHCC
Confidence 34567778888888888888763
No 237
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=94.02 E-value=1.9 Score=39.65 Aligned_cols=126 Identities=10% Similarity=-0.026 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHhcCCChhhHH
Q psy10061 102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK--SDAALTLYSRAADVAHGEDNYKQAA 179 (325)
Q Consensus 102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~--~~~A~~~y~~Al~~~~~~~~~~~~~ 179 (325)
+..++.+.|...++.+-=+.|+.+..++..+.+++.+||.++...+.++.... .-.++.. . .-+...-......
T Consensus 17 ~~~~l~~~y~~~~~~el~i~~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~---~-~~~~~qt~~~~ke 92 (436)
T 2yin_A 17 CTVNLLNFYKDNNREEMYIRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQ---T-GQQHPQTHRQLKE 92 (436)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC------------------CHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCccccc---C-CCCccccHHHHHH
Confidence 56688888998899999999999999999999999999999988887766543 1111100 0 0011100011112
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHh
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLA 231 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~~~~ 231 (325)
..+..+...+.+.+.|+.|+.+++..+..++.. -++...+.++..++.+|-.
T Consensus 93 ~L~~~~i~~f~kg~~~E~ai~l~k~L~~~yE~~~~Dy~~Ls~~~~~~a~~y~~ 145 (436)
T 2yin_A 93 TLYETIIGYFDKGKMWEEAISLCKELAEQYEMEIFDYELLSQNLIQQAKFYES 145 (436)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788888889999999999999999875 6777777777777777653
No 238
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=93.01 E-value=0.96 Score=41.63 Aligned_cols=94 Identities=6% Similarity=-0.024 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-------c--C----------------------------ChHHHH
Q psy10061 58 SAADDYSKAATCFKGAKSFQQCKEYLLKAANCYET-------N--K----------------------------SAYHAA 100 (325)
Q Consensus 58 ~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~-------~--~----------------------------~~~~aa 100 (325)
--...+++++..+...++|.+|+-++...+.+.-. . + ...+..
T Consensus 9 l~~~wl~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g~~~~~fte~~l~ 88 (428)
T 2wm9_A 9 LRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLM 88 (428)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC---------CCSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccCCCccccCHHHHH
Confidence 33456667777777777777777777644432221 0 0 112223
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q psy10061 101 KHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLE 151 (325)
Q Consensus 101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~ 151 (325)
..+..++..+.+.+.|+.|+..|+..+.+|....|+.+.+.++..++.+|.
T Consensus 89 ~ll~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~~dy~~Ls~~~~~~a~~y~ 139 (428)
T 2wm9_A 89 ELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYS 139 (428)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHTTTHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 356777777777778888888888888888888888888888877777665
No 239
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=92.97 E-value=5.5 Score=37.14 Aligned_cols=186 Identities=10% Similarity=0.008 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-------
Q psy10061 61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ------- 133 (325)
Q Consensus 61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~------- 133 (325)
+.+...+......|+.+.|...|.+|+.. ......+ ...+.. .+. ++. ++...+.+...
T Consensus 214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~------~~y~~~-~e~---~~~---~~~l~~~~~~~~~~~~~~ 279 (493)
T 2uy1_A 214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLS------LYYGLV-MDE---EAV---YGDLKRKYSMGEAESAEK 279 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHH------HHHHHH-TTC---THH---HHHHHHHTC---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHH------HHHHhh-cch---hHH---HHHHHHHHHhhccchhhh
Confidence 34445556667789999999999999988 4322111 111111 011 111 22221111000
Q ss_pred CCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH
Q psy10061 134 GNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVK-EFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 134 g~~~~aa~~l~~lg~~~~~~-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~ 211 (325)
.........+...+...... +.+.|...|.+| . .. +. ...++...+.+-...+ +.+.|..+|+.++..++.
T Consensus 280 ~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~--~~---~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~ 352 (493)
T 2uy1_A 280 VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NE--GV---GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD 352 (493)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TS--CC---CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CC--CC---ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence 01122234555556555444 489999999998 2 11 11 1235555566555555 699999999999886533
Q ss_pred cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061 212 SEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND 278 (325)
Q Consensus 212 ~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~ 278 (325)
. + ..+...+......|+.+.|...|+++.. + ..+.....+-- ..||.+.++..+.+
T Consensus 353 ~--~----~~~~~yid~e~~~~~~~~aR~l~er~~k---~--~~lw~~~~~fE~~~G~~~~~r~v~~~ 409 (493)
T 2uy1_A 353 S--T----LLKEEFFLFLLRIGDEENARALFKRLEK---T--SRMWDSMIEYEFMVGSMELFRELVDQ 409 (493)
T ss_dssp C--H----HHHHHHHHHHHHHTCHHHHHHHHHHSCC---B--HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred C--H----HHHHHHHHHHHHcCCHHHHHHHHHHHHH---H--HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2 1 1223344555678999999999999721 1 12222222221 24677766665544
No 240
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.77 E-value=1.9 Score=39.15 Aligned_cols=172 Identities=12% Similarity=0.062 Sum_probs=99.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCC
Q psy10061 107 IMMCKELNDLTDVENLAKQAATLFLEQ-----------GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDN 174 (325)
Q Consensus 107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~-----------g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~ 174 (325)
..+.....++++++++.++........ ........+...++..|...+ .++|..+++++-......++
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 334455677888888777654332211 112333445566677776665 88999999888877766553
Q ss_pred h--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHh-h-ccc
Q psy10061 175 Y--KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE--HLLAIGRLAVALVLVQLARGDTVAAEKAFKE-W-GNC 248 (325)
Q Consensus 175 ~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~-~-~~~ 248 (325)
. .-....+.-.+..|...++|..+...+-..+..+.... .........+.++.+.+...+...=-+.+.. . ...
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L 242 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETI 242 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSS
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHHHh
Confidence 2 33455666778888888999988777776666544322 2222222333444444433211111111111 1 222
Q ss_pred CCChHHHHHHHHHHHHhcCCHHHHHHHhcC
Q psy10061 249 CEAPEVQTLEKLLQAFDEEDPEGARQALND 278 (325)
Q Consensus 249 ~~~~e~~~l~~L~~a~~~gd~~~~~~~~~~ 278 (325)
....+...+.+|..++..||...+...++.
T Consensus 243 ~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~ 272 (393)
T 4b4t_O 243 VNDSNYDWLFQLLNALTVGDFDKFDSLIKV 272 (393)
T ss_dssp CSSSSTTHHHHHHHHHHHTCHHHHHHHCCH
T ss_pred hcCCchHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 333444557788999999999999887654
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.63 E-value=1.1 Score=34.76 Aligned_cols=87 Identities=14% Similarity=0.085 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCC
Q psy10061 117 TDVENLAKQAATLFL--EQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE 194 (325)
Q Consensus 117 ~eA~~~~~~A~~~~~--~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 194 (325)
++-++.|++|+.... +.+....=+..+.+.+...+..+.+.|...|+.++.+ .... +.++...+..-+++|+
T Consensus 36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~---hKkF---AKiwi~~AqFEiRqgn 109 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN---CKKF---AFVHISFAQFELSQGN 109 (161)
T ss_dssp HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH---CTTB---HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hHHH---HHHHHHHHHHHHHccc
Confidence 556667777765432 2344555666677777665445699999999999987 2223 6788889999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy10061 195 FDKAADLIRQEIGYH 209 (325)
Q Consensus 195 ~~~A~~~~~~al~~~ 209 (325)
..+|...+.+++.+.
T Consensus 110 l~kARkILg~AiG~~ 124 (161)
T 4h7y_A 110 VKKSKQLLQKAVERG 124 (161)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999998864
No 242
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.54 E-value=2.8 Score=33.40 Aligned_cols=45 Identities=9% Similarity=-0.027 Sum_probs=30.5
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061 71 KGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQA 126 (325)
Q Consensus 71 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A 126 (325)
..+|+++.|.+.... +++ -..+.++|......|+++-|..+|+++
T Consensus 16 L~lg~l~~A~e~a~~-------l~~----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKK-------LND----SITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHH-------HCC----HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHH-------hCC----HHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 356777777665432 232 346888888888888888888776654
No 243
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=92.36 E-value=1.8 Score=39.92 Aligned_cols=99 Identities=14% Similarity=-0.004 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC----------------h-HHHHHHHHHHHHHHHHcCCH
Q psy10061 54 PDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKS----------------A-YHAAKHLEQAIMMCKELNDL 116 (325)
Q Consensus 54 ~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~----------------~-~~aa~~~~~~~~~y~~~g~~ 116 (325)
+..+--....+++++.+...++|.+|+-++...++++.-..+ . ...-..|..++..+.+-+.|
T Consensus 29 ~~~el~i~~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~~~~~~~qt~~~~ke~L~~~~i~~f~kg~~~ 108 (436)
T 2yin_A 29 NREEMYIRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQLKETLYETIIGYFDKGKMW 108 (436)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC--------------CHHHHHHHHHHHHHHHHHHHTCH
T ss_pred CChHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccccCCCCccccHHHHHHHHHHHHHHHHHhcCcH
Confidence 455666777888888888888888888887554443321010 0 01123567777778787888
Q ss_pred HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhc
Q psy10061 117 TDVENLAKQAATLFLEQ-GNREAASTVLEKGAKSLEE 152 (325)
Q Consensus 117 ~eA~~~~~~A~~~~~~~-g~~~~aa~~l~~lg~~~~~ 152 (325)
+.|+.+|+..+..|... -|+...+.++..++.+|..
T Consensus 109 E~ai~l~k~L~~~yE~~~~Dy~~Ls~~~~~~a~~y~~ 145 (436)
T 2yin_A 109 EEAISLCKELAEQYEMEIFDYELLSQNLIQQAKFYES 145 (436)
T ss_dssp HHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888885 8888888888888887763
No 244
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.29 E-value=3 Score=31.93 Aligned_cols=79 Identities=9% Similarity=0.029 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHH
Q psy10061 179 AEYISRAARMCVRVKEFD---KAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEV 254 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~ 254 (325)
..+..++++.+++..+.. +++.+++..+. . ++...-.+++-+++.+.+.|||.+|..+.+.. ..-.+..++
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~---~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK---E--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH---H--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh---c--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 467889999999988665 56767666544 2 22223357778999999999999999999998 555566788
Q ss_pred HHHHHHHH
Q psy10061 255 QTLEKLLQ 262 (325)
Q Consensus 255 ~~l~~L~~ 262 (325)
..|..+++
T Consensus 114 ~~Lk~~Ie 121 (144)
T 1y8m_A 114 GALKSMVE 121 (144)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776655
No 245
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.10 E-value=6 Score=34.94 Aligned_cols=229 Identities=10% Similarity=0.042 Sum_probs=139.0
Q ss_pred cccH---HHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy10061 28 DRKK---EEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLE 104 (325)
Q Consensus 28 ~~~~---~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~ 104 (325)
.|+| =||.++++--..-+-+ +++|++|+++...-+..+...|++.-+.+.-.-.++++.+.+-... .....
T Consensus 25 ~G~y~~~YEAHQ~~RTi~~Ry~~-----~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~-~~~~~ 98 (336)
T 3lpz_A 25 EGQPEEQYEAAQETRLVAARYSK-----QGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVD-GASRG 98 (336)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC-HHHHH
T ss_pred CCCCccccHHHHHHHHHHHHHHh-----hcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHH
Confidence 3578 8899999875554434 4899999999999999999999999999999999999987653322 24667
Q ss_pred HHHHHHHHcCCHH-HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhccC-HHHHHHHHH------------HHHHHH
Q psy10061 105 QAIMMCKELNDLT-DVENLAKQAATLFLEQGN-REAASTVLEKGAKSLEELK-SDAALTLYS------------RAADVA 169 (325)
Q Consensus 105 ~~~~~y~~~g~~~-eA~~~~~~A~~~~~~~g~-~~~aa~~l~~lg~~~~~~~-~~~A~~~y~------------~Al~~~ 169 (325)
++..++.....-+ +=..+..+|+....+.|. ..+--..+..+|.+|-..+ +.+|..++- --.+++
T Consensus 99 rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 99 KLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 7777877665322 224456666666555432 2222346777888887765 777777762 112333
Q ss_pred hcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc-----------------H-HHHHHHHHHHHHHHHh
Q psy10061 170 HGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH-----------------L-LAIGRLAVALVLVQLA 231 (325)
Q Consensus 170 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------~-~~~~~~~~~lg~~~~~ 231 (325)
...+ .....-...+.-.-|...++...|...+..-+....+... + ... --+..+.++-+.
T Consensus 179 ~~~~-~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PL-LNFl~lLllt~q 256 (336)
T 3lpz_A 179 KQDE-SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPL-LNFISMLLLSVQ 256 (336)
T ss_dssp HTSC-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHH-HHHHHHHHHHHH
T ss_pred HhcC-CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCch-HHHHHHHHHHHh
Confidence 3333 3333333344555688889999998877666654422100 0 111 123344445556
Q ss_pred cCCHHHHHHHHHhh-cccC-CC-hHHHHHHHHHHHH
Q psy10061 232 RGDTVAAEKAFKEW-GNCC-EA-PEVQTLEKLLQAF 264 (325)
Q Consensus 232 ~gd~~~A~~~~~~~-~~~~-~~-~e~~~l~~L~~a~ 264 (325)
.+..+.-....+++ +... .. .=...|..|++.|
T Consensus 257 ~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~Y 292 (336)
T 3lpz_A 257 KGSPDLFRQLKSKYEANLNELNGIWDTALELIAEMY 292 (336)
T ss_dssp SCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence 66655444444444 2221 11 1135677888876
No 246
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=92.00 E-value=0.26 Score=40.49 Aligned_cols=92 Identities=14% Similarity=0.153 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHH
Q psy10061 178 AAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTL 257 (325)
Q Consensus 178 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l 257 (325)
...-+.-+|.++...++|.+|.+.+.+|+..+.+.+.. ....++.-+..+.+.+|+++. .+.+++++. . ..
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~-~k~~IL~yLIp~~Ll~G~iP~-~~ll~~~~~----~---~y 83 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQK-NKRMILIYLLPVKMLLGHMPT-VELLKKYHL----M---QF 83 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHH-HHHHHHHHHHHHHHHTTCEEC-HHHHHHTTC----G---GG
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHH-HHHHHHHHHHHHHHHcCCCCC-HHHhhhCch----h---HH
Confidence 34456789999999999999999999999887654422 233456667777888888654 344455421 1 24
Q ss_pred HHHHHHHhcCCHHHHHHHhcC
Q psy10061 258 EKLLQAFDEEDPEGARQALND 278 (325)
Q Consensus 258 ~~L~~a~~~gd~~~~~~~~~~ 278 (325)
..|..|+..||...|..++++
T Consensus 84 ~~L~~Avr~Gdl~~f~~~l~~ 104 (203)
T 3t5x_A 84 AEVTRAVSEGNLLLLHEALAK 104 (203)
T ss_dssp HHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHH
Confidence 478899999999999999876
No 247
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=90.16 E-value=8.6 Score=33.28 Aligned_cols=81 Identities=17% Similarity=0.173 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHhhcccCCChHHHHHHHHHHHH-h-c
Q psy10061 194 EFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLAR-----GDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAF-D-E 266 (325)
Q Consensus 194 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~-----gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~-~-~ 266 (325)
...+|...+++++++- .....+.++..+|.+|... ||.++|..+|+++-...+........-.++.+ . .
T Consensus 178 ~l~~A~a~lerAleLD----P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 178 TVHAAVMMLERACDLW----PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHHC----TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTT
T ss_pred hHHHHHHHHHHHHHhC----CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Confidence 3457777788887763 2334556788899999995 99999999999982222211122344456654 4 5
Q ss_pred CCHHHHHHHhcC
Q psy10061 267 EDPEGARQALND 278 (325)
Q Consensus 267 gd~~~~~~~~~~ 278 (325)
||.+.+...+++
T Consensus 254 gd~~~a~~~L~k 265 (301)
T 3u64_A 254 NNRAGFDEALDR 265 (301)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999988887
No 248
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.92 E-value=1.6 Score=40.90 Aligned_cols=140 Identities=6% Similarity=-0.036 Sum_probs=88.4
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc
Q psy10061 94 KSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLE-QGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHG 171 (325)
Q Consensus 94 ~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~-~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~ 171 (325)
.|....+..++.+...|...+.++.|..+..++. +-. .....+.++.+.-+|.++.-.. |.+|.+++..|+.....
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 3566788899999999999999999999988875 322 2455677899999999998775 99999999999876544
Q ss_pred CCC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 172 EDN-YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 172 ~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
... ......++..+..+-.-+|+.++-- .| ++-...... ..|..++.++ ..||...-...+++.
T Consensus 303 ~~~a~gfr~~a~K~lI~V~LLlG~iP~r~-lf-------~q~~l~~~L-~pY~~Lv~Av-r~GdL~~F~~~L~~h 367 (523)
T 4b4t_S 303 NSKSLGFLQQSNKLHCCIQLLMGDIPELS-FF-------HQSNMQKSL-LPYYHLTKAV-KLGDLKKFTSTITKY 367 (523)
T ss_dssp SSSCSHHHHHHHHHHHHHHHHHTCCCCHH-HH-------TTTSCHHHH-HHHHHHHHHH-HHTCHHHHHHHHHHT
T ss_pred chhhhhHHHHHHHHHHhHHhhcCCCCChH-Hh-------hchhHHHHH-HHHHHHHHHH-HcCCHHHHHHHHHHh
Confidence 321 1222334434444444467766411 11 111111111 1234444443 557776666666554
No 249
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=89.23 E-value=1.3 Score=41.59 Aligned_cols=61 Identities=11% Similarity=0.041 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061 141 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIG 207 (325)
Q Consensus 141 ~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 207 (325)
.++..+|.+..-.. ++.|..+|.+|+.+.+..| ..++.+|.+....|+.-+|+-+|.+++.
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G------~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG------QPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS------HHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCC------chHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 46778898887665 9999999999999998886 4788999999999999999999988875
No 250
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.19 E-value=2.9 Score=41.29 Aligned_cols=63 Identities=8% Similarity=0.034 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccc
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNC 248 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~ 248 (325)
..+.--+..+...|+|+-|+.+.++++...+.. -..|..|+.||..+||++.|+-.+..+|.|
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse------F~tW~~La~vYi~l~d~e~ALLtLNScPm~ 400 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDS------FESWYNLARCHIKKEEYEKALFAINSMPRL 400 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC------HHHHHHHHHHHHHTTCHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchh------hHHHHHHHHHHHHhccHHHHHHHHhcCCCc
Confidence 355566777888999999999999998875431 246778999999999999999999998655
No 251
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.16 E-value=4 Score=30.53 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhccC----HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 141 TVLEKGAKSLEELK----SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 141 ~~l~~lg~~~~~~~----~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 210 (325)
.+..++|..+.... ..+++.+++..+. . +.+....+++..+|..++++|+|++|..+++..|++-+
T Consensus 36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~---~-~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLP---K-GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT---T-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh---c-CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 45667777777664 4457777766543 2 33445668999999999999999999999999988743
No 252
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=88.42 E-value=1.7 Score=30.39 Aligned_cols=38 Identities=11% Similarity=0.062 Sum_probs=31.0
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 95 SAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLE 132 (325)
Q Consensus 95 ~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~ 132 (325)
.+...|..+..-++.+...|+|++||+++++|+.++.+
T Consensus 10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~e 47 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE 47 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 35566788888889999999999999999999876554
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.89 E-value=3.3 Score=37.38 Aligned_cols=60 Identities=10% Similarity=-0.067 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.++..++..+...|++.+|+..+.+.+... +... .++..+..++...|+..+|+..|+++
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-----P~~E-~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEH-----PYRE-PLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCH-HHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456678888999999999999998887652 2222 35667889999999999999999997
No 254
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=86.33 E-value=21 Score=33.13 Aligned_cols=173 Identities=6% Similarity=-0.024 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHH
Q psy10061 77 QQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSD 156 (325)
Q Consensus 77 ~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~ 156 (325)
......|++++...... ...+...+..+...|+.++|...|++|+.. .. +.. .+...+...+ ..
T Consensus 196 ~Rv~~~ye~al~~~p~~------~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~--~~~----l~~~y~~~~e-~~-- 259 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYA------EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SD--GMF----LSLYYGLVMD-EE-- 259 (493)
T ss_dssp HHHHHHHHHHHHHTTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC--SSH----HHHHHHHHTT-CT--
T ss_pred HHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC--cHH----HHHHHHhhcc-hh--
Confidence 34556777776654322 456777777888899999999999999987 22 211 1111222211 11
Q ss_pred HHHHHHHHHHHHH---hc----CCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q psy10061 157 AALTLYSRAADVA---HG----EDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQ 229 (325)
Q Consensus 157 ~A~~~y~~Al~~~---~~----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~ 229 (325)
+. +++..+.+ .. .........++...+....+.+..+.|...|+++ . .. +. ..+.+...+.+-
T Consensus 260 ~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~--~~---~~~v~i~~A~lE 329 (493)
T 2uy1_A 260 AV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NE--GV---GPHVFIYCAFIE 329 (493)
T ss_dssp HH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TS--CC---CHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CC--CC---ChHHHHHHHHHH
Confidence 11 11111111 10 0012223456777888888889999999999998 2 11 11 112444444444
Q ss_pred HhcC-CHHHHHHHHHhh-cccCCChHHHHHHHHHHH-HhcCCHHHHHHHhc
Q psy10061 230 LARG-DTVAAEKAFKEW-GNCCEAPEVQTLEKLLQA-FDEEDPEGARQALN 277 (325)
Q Consensus 230 ~~~g-d~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a-~~~gd~~~~~~~~~ 277 (325)
+..+ |++.|...|+.+ ..|.+..+.- + ..++- ...||.+.++..+.
T Consensus 330 ~~~~~d~~~ar~ife~al~~~~~~~~~~-~-~yid~e~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 330 YYATGSRATPYNIFSSGLLKHPDSTLLK-E-EFFLFLLRIGDEENARALFK 378 (493)
T ss_dssp HHHHCCSHHHHHHHHHHHHHCTTCHHHH-H-HHHHHHHHHTCHHHHHHHHH
T ss_pred HHHCCChHHHHHHHHHHHHHCCCCHHHH-H-HHHHHHHHcCCHHHHHHHHH
Confidence 4444 799999999998 5566555542 2 23332 24788887775543
No 255
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.13 E-value=5 Score=30.30 Aligned_cols=65 Identities=9% Similarity=0.037 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhccC----HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 141 TVLEKGAKSLEELK----SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 141 ~~l~~lg~~~~~~~----~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 210 (325)
.+..+.+..+.... ...++..++..+.. . +....+++..++..+.++|+|++|..+.+..|++-+
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~---~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---A--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---C--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---C--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 45556665555443 66888888776542 2 334568999999999999999999999998887643
No 256
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=84.88 E-value=4.5 Score=30.95 Aligned_cols=64 Identities=9% Similarity=0.019 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhccC----HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 140 STVLEKGAKSLEELK----SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 208 (325)
Q Consensus 140 a~~l~~lg~~~~~~~----~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 208 (325)
..+..+.+..+.... ..+++.+++..+.. . +....+++..++..+.++|+|.+|..+.+..|++
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~--~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---A--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---C--CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---C--ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 445666666666553 56788888776652 2 2234578999999999999999999999988876
No 257
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=84.67 E-value=2.6 Score=39.55 Aligned_cols=61 Identities=11% Similarity=0.036 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061 61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAA 127 (325)
Q Consensus 61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~ 127 (325)
.+...+|++.+....+..|..+|.+|..+....| ..|+.+|.++...|+.-+|+-+|.+++
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G------~~~nqLavla~~~~~~l~a~y~y~rsl 213 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG------QPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCC------chHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4666778888888888889999999888888776 477888888888888888888888876
No 258
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=84.62 E-value=5.5 Score=40.74 Aligned_cols=95 Identities=13% Similarity=0.128 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh--cccCCChHHHH
Q psy10061 179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW--GNCCEAPEVQT 256 (325)
Q Consensus 179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~--~~~~~~~e~~~ 256 (325)
-.+|+.+-..|++.|+.++|..+|.+.......--.+.. .+|+.+...|...|+.++|.+.|++. .++.. ..-+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pdv--vTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P--DvvT 202 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTL--DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP--DLLS 202 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC--CHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCH--hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--cHHH
Confidence 457888889999999999999998776543221111222 36788888889999999999999986 33332 2233
Q ss_pred HHHHHHHH-hcCC-HHHHHHHhc
Q psy10061 257 LEKLLQAF-DEED-PEGARQALN 277 (325)
Q Consensus 257 l~~L~~a~-~~gd-~~~~~~~~~ 277 (325)
...|++.+ ..|. .+.+...++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~ 225 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLE 225 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHH
Confidence 44455554 4554 455555554
No 259
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.54 E-value=7.3 Score=35.08 Aligned_cols=62 Identities=8% Similarity=-0.127 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHH
Q psy10061 102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVA 169 (325)
Q Consensus 102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~ 169 (325)
+...++..+...|++.+++..+..++...--.... +..+-..+...+ ..+|+..|++.-..+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~------~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPL------WTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH------HHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 44555666666677777766666665544333221 222333333333 555555555555543
No 260
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=83.11 E-value=10 Score=34.73 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10061 160 TLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQ 204 (325)
Q Consensus 160 ~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 204 (325)
+.++++++.+.+.+.+..+..++..+...|-...+|.+-..++.+
T Consensus 89 ~ll~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~~dy~~Ls~~~~~ 133 (428)
T 2wm9_A 89 ELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDT 133 (428)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHTTTHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 345555555555555555555555555555555555444444333
No 261
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.52 E-value=3.4 Score=42.95 Aligned_cols=99 Identities=12% Similarity=0.031 Sum_probs=71.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----------------cCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHH
Q psy10061 104 EQAIMMCKELNDLTDVENLAKQAATLFLE-----------------QGNREAASTVLEKGAKSLEELK-SDAALTLYSRA 165 (325)
Q Consensus 104 ~~~~~~y~~~g~~~eA~~~~~~A~~~~~~-----------------~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~A 165 (325)
.-+|.+|...|++++|..++++|..-... ..........|..+..+++..+ ++.++++.+.|
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55799999999999999999987422111 1111122357888888999888 99999999999
Q ss_pred HHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061 166 ADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIR 203 (325)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 203 (325)
++.... ++.......+.++=..+...|+|++|...+.
T Consensus 926 i~~~~~-~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 926 DASKET-DDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHCCS-CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHhccC-CChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 986543 3333334567778888999999999977663
No 262
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=81.03 E-value=3.5 Score=28.35 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=22.0
Q ss_pred ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHH
Q psy10061 27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCF 70 (325)
Q Consensus 27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y 70 (325)
++...++|+.+..+|.+.-+. ++|++|..+|..+...+
T Consensus 6 ~~~~l~~A~~l~~~Av~~D~~------g~y~eAl~~Y~~aie~l 43 (85)
T 2v6x_A 6 TGDFLTKGIELVQKAIDLDTA------TQYEEAYTAYYNGLDYL 43 (85)
T ss_dssp CSCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHH
Confidence 334566666666666554333 56666666666655543
No 263
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=78.99 E-value=18 Score=37.17 Aligned_cols=103 Identities=8% Similarity=-0.092 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChh
Q psy10061 98 HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYK 176 (325)
Q Consensus 98 ~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~ 176 (325)
..-..|+.+...|.+.|+.++|...+....+...+.-.+. ..+|+.+-..|-..+ .++|.+.+.+-.+ .|-..
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd--vvTYNtLI~Glck~G~~~eA~~Lf~eM~~----~G~~P 198 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT--LDMYNAVMLGWARQGAFKELVYVLFMVKD----AGLTP 198 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----TTCCC
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC--HhHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCCC
Confidence 3445688888889999999998888876543322211111 235676666666666 8888888876542 34333
Q ss_pred hHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Q psy10061 177 QAAEYISRAARMCVRVKEF-DKAADLIRQEIG 207 (325)
Q Consensus 177 ~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~ 207 (325)
.. .+|+.+-..+++.|+. ++|.++|++...
T Consensus 199 Dv-vTYntLI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 199 DL-LSYAAALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp CH-HHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 32 4777777788888874 677788877654
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.63 E-value=27 Score=36.26 Aligned_cols=128 Identities=9% Similarity=-0.047 Sum_probs=86.2
Q ss_pred HHHHHHHhccC-HHHHHHHHHHHHHHHhcCC-----------------ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061 144 EKGAKSLEELK-SDAALTLYSRAADVAHGED-----------------NYKQAAEYISRAARMCVRVKEFDKAADLIRQE 205 (325)
Q Consensus 144 ~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~-----------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 205 (325)
.-+|.++-..+ +++|..++++|..-..... ........|.++..++-+.+.++.+++..+.|
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44677777777 9999999988753221111 01112245788889999999999999999999
Q ss_pred HHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHHHH-HhcCCHHHHHH
Q psy10061 206 IGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQA-FDEEDPEGARQ 274 (325)
Q Consensus 206 l~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a-~~~gd~~~~~~ 274 (325)
++.... ++.......+.++-..++..|+|++|...+...+.-... ...|..|... ++.|..+..-.
T Consensus 926 i~~~~~-~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 926 DASKET-DDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp HHHCCS-CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHhccC-CChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhhhhC
Confidence 875322 333344457888999999999999999999876322222 2346666554 36666655544
No 265
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=78.51 E-value=3.9 Score=37.83 Aligned_cols=135 Identities=10% Similarity=0.028 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc---CC--ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HH
Q psy10061 138 AASTVLEKGAKSLEELK-SDAALTLYSRAADVAHG---ED--NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY-HQ 210 (325)
Q Consensus 138 ~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~---~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~ 210 (325)
+..-..+++-.+|.+.+ ...+-... ++++-... .. .......-+.-+|.++...++|.+|.+++..|+.. +.
T Consensus 174 ~~l~l~n~L~kiYFkl~~~~lckni~-k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp 252 (455)
T 3t5v_B 174 ILLYLVNKLNNIYFRIESPQLCSNIF-KNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLN 252 (455)
T ss_dssp HHHHHHHHHHHHHHHSSCCTTHHHHH-HTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHH-HHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCC
Confidence 33344555667777776 44444443 33333211 11 12344556778999999999999999999999998 77
Q ss_pred Hcc----cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHH-HHHHHHHHHhcCCHHHHHHHhcC
Q psy10061 211 ESE----HLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQ-TLEKLLQAFDEEDPEGARQALND 278 (325)
Q Consensus 211 ~~~----~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~-~l~~L~~a~~~gd~~~~~~~~~~ 278 (325)
... .......++.-+..+.+-+|+++.-. .+++.. . ..-. +...|..|+..||...|..++++
T Consensus 253 ~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~-ll~k~~---~-~~L~~~y~~L~~AVr~Gdl~~F~~~L~~ 320 (455)
T 3t5v_B 253 LPLTNQAITRNGTRILNYMIPTGLILGKMVKWG-PLRPFL---S-QETIDNWSVLYKHVRYGNIQGVSLWLRQ 320 (455)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHH-HHGGGS---C-HHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ccccchhhhhHHHHHHHHHHHHHHHcCCCCCHH-HHcccc---h-HHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 531 12223345556677777788764432 233321 0 1222 24578899999999999999986
No 266
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=76.32 E-value=9.3 Score=26.67 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 176 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 176 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 210 (325)
...+..+...+..+...|+|++||++.+++.....
T Consensus 12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~ 46 (97)
T 2crb_A 12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLS 46 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 34455667777888888888888888888776543
No 267
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=75.70 E-value=5.8 Score=27.21 Aligned_cols=34 Identities=26% Similarity=0.267 Sum_probs=19.2
Q ss_pred cHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHH
Q psy10061 30 KKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATC 69 (325)
Q Consensus 30 ~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~ 69 (325)
-.++|+++..+|.+.=+. ++|++|..+|.++...
T Consensus 15 ~~~~Ai~lv~~Ave~D~~------g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 15 LEEMARKYAINAVKADKE------GNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHH
Confidence 455666666666554433 5666666666554443
No 268
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=74.85 E-value=5.2 Score=29.46 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHH
Q psy10061 30 KKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCF 70 (325)
Q Consensus 30 ~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y 70 (325)
.+.+|+.++.+|...-+. ++|++|..+|..+...|
T Consensus 14 ~l~kAi~lv~~Ave~D~a------g~y~eAl~lY~~Aie~l 48 (117)
T 2cpt_A 14 NLQKAIDLASKAAQEDKA------GNYEEALQLYQHAVQYF 48 (117)
T ss_dssp HHHHHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHHH
Confidence 456666666666544433 56666666666655544
No 269
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=74.48 E-value=6.4 Score=26.94 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHH
Q psy10061 31 KEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATC 69 (325)
Q Consensus 31 ~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~ 69 (325)
.++|+++.++|.+.=+. ++|++|..+|.++...
T Consensus 8 ~~~Ai~lv~~Ave~D~~------g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 8 EDMARKYAILAVKADKE------GKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHH
Confidence 34555555555444332 4555555555554433
No 270
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=74.13 E-value=22 Score=35.08 Aligned_cols=52 Identities=21% Similarity=0.191 Sum_probs=41.7
Q ss_pred HHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10061 147 AKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQ 204 (325)
Q Consensus 147 g~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 204 (325)
+..+...+ ++-|+++-++|..+.... -.++..|+.+|+.+|+|+.|+-.+.-
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPse------F~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDS------FESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchh------hHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 44444444 999999999999987654 46899999999999999999876543
No 271
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=71.93 E-value=7.7 Score=27.20 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=19.4
Q ss_pred cHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHH
Q psy10061 30 KKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCF 70 (325)
Q Consensus 30 ~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y 70 (325)
-.++|+++..+|.+.-+. ++|++|..+|..+...+
T Consensus 11 ~l~~Ai~lv~~Ave~D~~------g~y~eAl~~Y~~Aie~l 45 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELDAE------SRYQQALVCYQEGIDML 45 (93)
T ss_dssp HHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHH
Confidence 355666666666554433 56666666655554443
No 272
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=71.22 E-value=34 Score=26.49 Aligned_cols=88 Identities=13% Similarity=0.011 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q psy10061 32 EEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCK 111 (325)
Q Consensus 32 ~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~ 111 (325)
++-.+.|.+|...+..+- +..|..=+-+.-+-+.. ...++.++|.+.|..+..++++. +..+...+..-.
T Consensus 36 ~rlrd~YerAia~~Pp~k---~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkF------AKiwi~~AqFEi 105 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPPDK---YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKF------AFVHISFAQFEL 105 (161)
T ss_dssp HHHHHHHHHHHHHSCGGG---GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTB------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccc---cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHH
Confidence 667788888877665531 35667777777776644 56799999999999999874332 788888899999
Q ss_pred HcCCHHHHHHHHHHHHHH
Q psy10061 112 ELNDLTDVENLAKQAATL 129 (325)
Q Consensus 112 ~~g~~~eA~~~~~~A~~~ 129 (325)
++|+...|...+.+|+.+
T Consensus 106 Rqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 106 SQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HTTCHHHHHHHHHHHHHT
T ss_pred HcccHHHHHHHHHHHhcc
Confidence 999999999999999863
No 273
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=71.07 E-value=8.4 Score=26.58 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHH
Q psy10061 31 KEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATC 69 (325)
Q Consensus 31 ~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~ 69 (325)
-..|+++..+|.+.-+. ++|++|..+|..+...
T Consensus 13 ~~~A~~lv~~Ave~D~~------g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 13 STAAATVLKRAVELDSE------SRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHH
Confidence 34455555555444332 4455555544444433
No 274
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=68.49 E-value=12 Score=25.57 Aligned_cols=21 Identities=10% Similarity=0.072 Sum_probs=12.8
Q ss_pred HHcCCHHHHHHHHHHHHHHHH
Q psy10061 111 KELNDLTDVENLAKQAATLFL 131 (325)
Q Consensus 111 ~~~g~~~eA~~~~~~A~~~~~ 131 (325)
-+.|++++|+.+|.++++.+.
T Consensus 30 D~~g~y~eAl~lY~~aie~l~ 50 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAIEVLA 50 (83)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHH
Confidence 444666666666666666543
No 275
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=68.18 E-value=17 Score=25.02 Aligned_cols=26 Identities=8% Similarity=0.038 Sum_probs=15.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 107 IMMCKELNDLTDVENLAKQAATLFLE 132 (325)
Q Consensus 107 ~~~y~~~g~~~eA~~~~~~A~~~~~~ 132 (325)
+.-.-..|++++|+.+|..+++.+..
T Consensus 23 Ave~D~~g~y~eAl~lY~~Aie~ll~ 48 (86)
T 4a5x_A 23 AVELDSESRYPQALVCYQEGIDLLLQ 48 (86)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 33334556677777777776666543
No 276
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=64.96 E-value=68 Score=27.64 Aligned_cols=189 Identities=11% Similarity=0.074 Sum_probs=108.9
Q ss_pred ccHHHHHHHHHHHHhhhccc-ccCCCCCHHHHHHHHHHHHHHHHhcCC----HHH----HHHHHHHHHHHHHhcCChHHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTS-LLKWKPDYDSAADDYSKAATCFKGAKS----FQQ----CKEYLLKAANCYETNKSAYHA 99 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~-~~~~~~~~~~A~~~y~~a~~~y~~~g~----~~~----A~~~~~~a~~~~~~~~~~~~a 99 (325)
++.+.=.+++..+.+.+-.| ..+..--++-.+-.+-+++.-+..... |+. -..+..+.+...-....+..+
T Consensus 19 ~d~d~~f~il~~~rk~~~~gg~~Ri~~TlPpLvf~~l~L~r~~~~~~~~d~~~~~~~~kif~fv~~~i~~L~~~~~~ela 98 (298)
T 2r17_C 19 EDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELP 98 (298)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHHHHHTTTTTCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCccceeecccHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence 45666677777777766442 000000123333444444444444332 221 122222333333334455666
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHhcC
Q psy10061 100 AKHLEQAIMMCKELND---LTDVENLAKQAATLFLE-QGNREAASTVLEKGAKSLEELK---SDAALTLYSRAADVAHGE 172 (325)
Q Consensus 100 a~~~~~~~~~y~~~g~---~~eA~~~~~~A~~~~~~-~g~~~~aa~~l~~lg~~~~~~~---~~~A~~~y~~Al~~~~~~ 172 (325)
-+.|...+.+--..|- -+-|-+.+.+|..+|++ ..|......++..+...+.... .+.-...-.++.....+.
T Consensus 99 lrL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~IsdSk~Q~~al~~ii~tL~~~~~f~~enye~L~tk~t~~askL 178 (298)
T 2r17_C 99 LRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKL 178 (298)
T ss_dssp HHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHccCCCHhhHHHHHHHHHHHHHhc
Confidence 6777777766666554 45577899999999998 6788878888888777777653 222222333443333333
Q ss_pred CChhhHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHHcccHHH
Q psy10061 173 DNYKQAAEYISRAARMCVR----------VKEFDKAADLIRQEIGYHQESEHLLA 217 (325)
Q Consensus 173 ~~~~~~~~~~~~lg~~~~~----------~g~~~~A~~~~~~al~~~~~~~~~~~ 217 (325)
=..+....+....+.++.. ..+-...++++++++.++...-+...
T Consensus 179 LKK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~d~~~ 233 (298)
T 2r17_C 179 LKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSL 233 (298)
T ss_dssp SSHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred cCcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHhChhh
Confidence 3334445566677777764 24777999999999999887754433
No 277
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=64.70 E-value=22 Score=24.80 Aligned_cols=21 Identities=5% Similarity=0.039 Sum_probs=11.8
Q ss_pred HHcCCHHHHHHHHHHHHHHHH
Q psy10061 111 KELNDLTDVENLAKQAATLFL 131 (325)
Q Consensus 111 ~~~g~~~eA~~~~~~A~~~~~ 131 (325)
-..|++++|+.+|..+++.+.
T Consensus 26 D~~g~y~eAl~~Y~~Aie~l~ 46 (93)
T 1wfd_A 26 DAESRYQQALVCYQEGIDMLL 46 (93)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHH
Confidence 334566666666666655544
No 278
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=64.64 E-value=20 Score=24.35 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=12.5
Q ss_pred HHcCCHHHHHHHHHHHHHHHH
Q psy10061 111 KELNDLTDVENLAKQAATLFL 131 (325)
Q Consensus 111 ~~~g~~~eA~~~~~~A~~~~~ 131 (325)
-+.|++++|+.+|.++++.+.
T Consensus 22 D~~g~y~eAl~lY~~aie~l~ 42 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAIEVLS 42 (83)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHH
Confidence 344666666666666665543
No 279
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=64.05 E-value=28 Score=35.31 Aligned_cols=24 Identities=4% Similarity=-0.015 Sum_probs=20.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061 104 EQAIMMCKELNDLTDVENLAKQAA 127 (325)
Q Consensus 104 ~~~~~~y~~~g~~~eA~~~~~~A~ 127 (325)
.-.|.+|...|++++|..++++|.
T Consensus 844 yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 844 YLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Confidence 457899999999999999998875
No 280
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=63.37 E-value=24 Score=23.98 Aligned_cols=20 Identities=0% Similarity=0.001 Sum_probs=11.9
Q ss_pred HcCCHHHHHHHHHHHHHHHH
Q psy10061 112 ELNDLTDVENLAKQAATLFL 131 (325)
Q Consensus 112 ~~g~~~eA~~~~~~A~~~~~ 131 (325)
..|++++|+.+|..+++++.
T Consensus 25 ~~g~y~eAl~~Y~~aie~l~ 44 (85)
T 2v6x_A 25 TATQYEEAYTAYYNGLDYLM 44 (85)
T ss_dssp HTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHH
Confidence 34666666666666666543
No 281
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=63.18 E-value=15 Score=26.99 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=11.7
Q ss_pred cCCHHHHHHHHHHHHHHHH
Q psy10061 113 LNDLTDVENLAKQAATLFL 131 (325)
Q Consensus 113 ~g~~~eA~~~~~~A~~~~~ 131 (325)
.|++++|+.+|..|++++.
T Consensus 31 ag~y~eAl~lY~~Aie~l~ 49 (117)
T 2cpt_A 31 AGNYEEALQLYQHAVQYFL 49 (117)
T ss_dssp HTCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHH
Confidence 3666666666666666544
No 282
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=60.25 E-value=48 Score=29.53 Aligned_cols=94 Identities=14% Similarity=0.052 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHHHc
Q psy10061 117 TDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL---KSDAALTLYSRAADVAHGE-DNYKQAAEYISRAARMCVRV 192 (325)
Q Consensus 117 ~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~---~~~~A~~~y~~Al~~~~~~-~~~~~~~~~~~~lg~~~~~~ 192 (325)
-+-..+-++.+=++-..|....--.++.+||.+=+.. +...++..|.+|+...+.- ++.+ ..-|.-+|-.+++.
T Consensus 232 ~El~~LQq~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~H--vYPYtylgGy~yR~ 309 (472)
T 3re2_A 232 IQLSQLQQELLWLLYDMGHIKTYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHH--IYPYTYLGGYYYRK 309 (472)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC--SHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccchhhCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCC--ccchhhhhhhhhhc
Confidence 4556666777777777776555555666777665533 4556888999998877653 2222 23455688899999
Q ss_pred CCHHHHHHHHHHHHHHHHHc
Q psy10061 193 KEFDKAADLIRQEIGYHQES 212 (325)
Q Consensus 193 g~~~~A~~~~~~al~~~~~~ 212 (325)
+++.+|+...-++-.+.+.-
T Consensus 310 ~~~reAl~~WA~Aa~Vi~~Y 329 (472)
T 3re2_A 310 KKYYEAIASWVDAGYVAGKY 329 (472)
T ss_dssp TCHHHHHHHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHHHHHHHHc
Confidence 99999999998887776553
No 283
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=59.64 E-value=95 Score=27.73 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHHH
Q psy10061 97 YHAAKHLEQAIMMCKELN------DLTDVENLAKQAATLFL 131 (325)
Q Consensus 97 ~~aa~~~~~~~~~y~~~g------~~~eA~~~~~~A~~~~~ 131 (325)
.+.+.++.|+|-+|...+ ....|..++++|.-++.
T Consensus 120 fE~a~vLfNlaal~s~~A~~~~r~~lk~A~~~fq~AAG~f~ 160 (392)
T 1zb1_A 120 FEKSCTLFNIAVIFTQIARENINEDYKNSIANLTKAFSCFE 160 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 345556666665554332 35677777777776654
No 284
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.73 E-value=1e+02 Score=27.56 Aligned_cols=68 Identities=13% Similarity=-0.041 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 178 AAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH--LLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 178 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
...+...++..|...|+.++|..+++++-......++ +...+.++...+..|...+++..+...+-.+
T Consensus 126 ~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~ 195 (393)
T 4b4t_O 126 ILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLY 195 (393)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4456778999999999999999999999887776653 3456677778888889999998887777775
No 285
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=58.27 E-value=13 Score=34.50 Aligned_cols=30 Identities=20% Similarity=0.104 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 99 AAKHLEQAIMMCKELNDLTDVENLAKQAATL 129 (325)
Q Consensus 99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~ 129 (325)
++.-|.+++..+.. |..++|...-.+|-++
T Consensus 487 aGDyy~~AA~k~~y-G~~eqAe~l~~~A~~~ 516 (526)
T 2wb7_A 487 AGDYYVNAARKALN-GDLEQAKIDAEKAKEY 516 (526)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhc-CccHHHHHHHHHHHHH
Confidence 34444444444443 6666665555555444
No 286
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=56.95 E-value=65 Score=25.59 Aligned_cols=76 Identities=11% Similarity=0.025 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHH---------HHHHHhcCCHHHHHHHHHHHH--HHHHh----------cCChHHHHHHHHHHHHHHH
Q psy10061 53 KPDYDSAADDYSKA---------ATCFKGAKSFQQCKEYLLKAA--NCYET----------NKSAYHAAKHLEQAIMMCK 111 (325)
Q Consensus 53 ~~~~~~A~~~y~~a---------~~~y~~~g~~~~A~~~~~~a~--~~~~~----------~~~~~~aa~~~~~~~~~y~ 111 (325)
.+.|..+.-...++ ..||...++|..|+.+.+..+ ++-+. .-++...---+..+|.++.
T Consensus 46 ngEY~R~Lf~L~~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~llt 125 (242)
T 3kae_A 46 NGEYTRALFHLHKLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCT 125 (242)
T ss_dssp TTCHHHHHHHHHTCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHH
T ss_pred cchHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHH
Confidence 45555554443332 468889999999999998876 22111 1123334456777899999
Q ss_pred HcCCHHHHHHHHHHHHH
Q psy10061 112 ELNDLTDVENLAKQAAT 128 (325)
Q Consensus 112 ~~g~~~eA~~~~~~A~~ 128 (325)
..|+.+||+.++...-.
T Consensus 126 q~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 126 LSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHhhhHhhhhcC
Confidence 99999999999887654
No 287
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=54.28 E-value=62 Score=29.97 Aligned_cols=13 Identities=15% Similarity=-0.056 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q psy10061 117 TDVENLAKQAATL 129 (325)
Q Consensus 117 ~eA~~~~~~A~~~ 129 (325)
+-|-++|.+|.+.
T Consensus 485 E~aGDyy~~AA~k 497 (526)
T 2wb7_A 485 EMAGDYYVNAARK 497 (526)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHH
Confidence 3344455555554
No 288
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=53.85 E-value=18 Score=25.46 Aligned_cols=29 Identities=10% Similarity=0.205 Sum_probs=25.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 183 SRAARMCVRVKEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 183 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 211 (325)
..+|..+...|+++.|+.+|-+|+.++.+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 47899999999999999999999998743
No 289
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=53.79 E-value=12 Score=24.99 Aligned_cols=29 Identities=10% Similarity=0.205 Sum_probs=25.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061 183 SRAARMCVRVKEFDKAADLIRQEIGYHQE 211 (325)
Q Consensus 183 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 211 (325)
..+|+.+...|++++|+.+|-+|+.++.+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 46899999999999999999999988754
No 290
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=53.36 E-value=1.2e+02 Score=29.26 Aligned_cols=95 Identities=14% Similarity=0.096 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHhccC-----H-------HHHHHHHHHHHHHH
Q psy10061 103 LEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEK-GAKSLEELK-----S-------DAALTLYSRAADVA 169 (325)
Q Consensus 103 ~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~-lg~~~~~~~-----~-------~~A~~~y~~Al~~~ 169 (325)
...+|.-....|++++|+.+|. -.|+++.+...+++ |+.+..... . +.=+...++..+.+
T Consensus 446 ~~~aA~~ae~~G~~~dAi~LY~-------La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y 518 (661)
T 2qx5_A 446 TEQAARRADEDGRIYDSILLYQ-------LAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIY 518 (661)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH-------HTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHH-------HhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 3445555666676666655443 34666666665554 344432210 0 11222333334444
Q ss_pred hcCC--------ChhhHHHHHHHHHHHH--HHcCCHHHHHHHHHH
Q psy10061 170 HGED--------NYKQAAEYISRAARMC--VRVKEFDKAADLIRQ 204 (325)
Q Consensus 170 ~~~~--------~~~~~~~~~~~lg~~~--~~~g~~~~A~~~~~~ 204 (325)
.... ........+..+..++ +..|+|++|++.+++
T Consensus 519 ~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~ 563 (661)
T 2qx5_A 519 FDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMEL 563 (661)
T ss_dssp TTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3321 0122344555565554 667777777766654
No 291
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=52.91 E-value=58 Score=29.56 Aligned_cols=94 Identities=17% Similarity=0.074 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHHHc
Q psy10061 117 TDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL---KSDAALTLYSRAADVAHGE-DNYKQAAEYISRAARMCVRV 192 (325)
Q Consensus 117 ~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~---~~~~A~~~y~~Al~~~~~~-~~~~~~~~~~~~lg~~~~~~ 192 (325)
-+-..+-++.+=++-..|....--.++.+||.+-+.. +-..++..|.+|+...+.- ++.+ ..-|.-+|-.|++.
T Consensus 254 ~el~~LQq~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~H--vYPYtYlgGy~yR~ 331 (550)
T 3u84_A 254 LELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH--IYPYMYLAGYHCRN 331 (550)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCC--SHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccchhhCchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCC--ccceeecchhhhhc
Confidence 3555566777777777776555555666777665533 4446888899988776653 2222 23456688899999
Q ss_pred CCHHHHHHHHHHHHHHHHHc
Q psy10061 193 KEFDKAADLIRQEIGYHQES 212 (325)
Q Consensus 193 g~~~~A~~~~~~al~~~~~~ 212 (325)
++|.+|+...-++-.+.+.-
T Consensus 332 ~~~reAl~~WA~Aa~Vi~~Y 351 (550)
T 3u84_A 332 RNVREALQAWADTATVIQDY 351 (550)
T ss_dssp TCHHHHHHHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHHHHHHHHc
Confidence 99999999998887776553
No 292
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=51.38 E-value=48 Score=30.07 Aligned_cols=96 Identities=18% Similarity=0.083 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHH
Q psy10061 115 DLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEE---LKSDAALTLYSRAADVAHGE-DNYKQAAEYISRAARMCV 190 (325)
Q Consensus 115 ~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~---~~~~~A~~~y~~Al~~~~~~-~~~~~~~~~~~~lg~~~~ 190 (325)
+-.+-+..-++.+-++-..|....--.++.+||++-+. .+.+.++..|++|+...+.. ++.+ ...|.-+|-.+.
T Consensus 237 Ds~el~~lQq~LLWlLyd~Ghl~~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~h--vYPYtYlgG~~~ 314 (489)
T 4gq4_A 237 DSLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH--IYPYMYLAGYHC 314 (489)
T ss_dssp ECHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC--SHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhccchhhcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCc--ccceeecchHHH
Confidence 34456666777777777777655444556666666543 34566788999999877654 2222 245667899999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHc
Q psy10061 191 RVKEFDKAADLIRQEIGYHQES 212 (325)
Q Consensus 191 ~~g~~~~A~~~~~~al~~~~~~ 212 (325)
+.++|.+|+..+-++-...+.-
T Consensus 315 R~~~~~eAl~~wa~aa~Vi~~Y 336 (489)
T 4gq4_A 315 RNRNVREALQAWADTATVIQDY 336 (489)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTS
T ss_pred HhhhHHHHHHHhhhhhhhhhhc
Confidence 9999999999998887776543
No 293
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=50.89 E-value=18 Score=24.39 Aligned_cols=29 Identities=14% Similarity=0.106 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 182 ISRAARMCVRVKEFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 182 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 210 (325)
..++|.=|...|+|+.|+.+|+.++....
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~ 43 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQMN 43 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 34788888999999999999999987643
No 294
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=50.13 E-value=1.4e+02 Score=26.45 Aligned_cols=36 Identities=19% Similarity=0.043 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHH
Q psy10061 96 AYHAAKHLEQAIMMCKELN---------DLTDVENLAKQAATLFL 131 (325)
Q Consensus 96 ~~~aa~~~~~~~~~y~~~g---------~~~eA~~~~~~A~~~~~ 131 (325)
..+.+.++.|+|-+|...+ ....|..++++|.-++.
T Consensus 113 ~fE~a~VLfNiaal~s~~a~~~~r~~~~glK~A~~~fq~AAG~f~ 157 (363)
T 3rau_A 113 KYEQACILYNLGALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFA 157 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH
Confidence 3566778888888876543 24567788888877764
No 295
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=47.02 E-value=2.4e+02 Score=28.54 Aligned_cols=29 Identities=14% Similarity=0.362 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q psy10061 65 KAATCFKGAKSFQQCKEYLLKAANCYETN 93 (325)
Q Consensus 65 ~a~~~y~~~g~~~~A~~~~~~a~~~~~~~ 93 (325)
-+..+|..+|+|++|+.+-..|...+.-.
T Consensus 75 vaSkvyy~Lg~~~~al~yaL~aG~~fd~~ 103 (963)
T 4ady_A 75 IASKVYYNLGEYESAVKYALAAKDRFDID 103 (963)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHGGGSCTT
T ss_pred HHHHHheeccchHHHHHHHHhCCCcCCCC
Confidence 45678999999999999998888877533
No 296
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=46.12 E-value=1.4e+02 Score=25.59 Aligned_cols=157 Identities=10% Similarity=0.002 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHcCCHHH-H-HHHHHHHH
Q psy10061 54 PDYDSAADDYSKAATCFKGAKS---FQQCKEYLLKAANCYET-NKSAYHAAKHLEQAIMMCKELNDLTD-V-ENLAKQAA 127 (325)
Q Consensus 54 ~~~~~A~~~y~~a~~~y~~~g~---~~~A~~~~~~a~~~~~~-~~~~~~aa~~~~~~~~~y~~~g~~~e-A-~~~~~~A~ 127 (325)
+..+-+..+|-+++.+--..+- -+-|-++|.+|..+|+. +.|......+..-+.....+...+.+ - ..+-.++.
T Consensus 93 ~~~elalrL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~IsdSk~Q~~al~~ii~tL~~~~~f~~enye~L~tk~t 172 (298)
T 2r17_C 93 ELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCA 172 (298)
T ss_dssp TCCHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHccCCCHhhHHHHHHHHH
Confidence 4557788888888887776665 56678889999999997 77777777777777766666655431 1 11112222
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHhc-----------cCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH---HHHHcC
Q psy10061 128 TLFLEQGNREAASTVLEKGAKSLEE-----------LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAAR---MCVRVK 193 (325)
Q Consensus 128 ~~~~~~g~~~~aa~~l~~lg~~~~~-----------~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~---~~~~~g 193 (325)
...-++=......++....+.++-. .+....++|+++|+.+....-+.......+..+-+ .|...|
T Consensus 173 ~~askLLKK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~d~~~~v~LfveILn~ylyff~~g 252 (298)
T 2r17_C 173 LAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLFIEILNRYIYFYEKE 252 (298)
T ss_dssp HHHHTCSSHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhhhhCC
Confidence 2223332333334444455554421 23789999999999998876554433333333332 344555
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy10061 194 EFDKAADLIRQEIGYHQ 210 (325)
Q Consensus 194 ~~~~A~~~~~~al~~~~ 210 (325)
+-.=..++....+++.+
T Consensus 253 ~~~Vt~~~in~LI~lI~ 269 (298)
T 2r17_C 253 NDAVTIQVLNQLIQKIR 269 (298)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHH
Confidence 54334444555555444
No 297
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=41.14 E-value=50 Score=25.63 Aligned_cols=62 Identities=15% Similarity=0.059 Sum_probs=42.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHc--ccHHHHHHHH-HHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 184 RAARMCVRVKEFDKAADLIRQEIGYHQES--EHLLAIGRLA-VALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 184 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~-~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.-+..++..|+|-+|.+.++..=...... .....++.+. ...+..++..|+...|...+.++
T Consensus 37 ~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~A 101 (161)
T 2ijq_A 37 VHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTS 101 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44555666699999998887654322111 1223455566 66777888899999999999986
No 298
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=37.66 E-value=97 Score=21.24 Aligned_cols=27 Identities=11% Similarity=-0.012 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHh
Q psy10061 218 IGRLAVALVLVQLARGDTVAAEKAFKE 244 (325)
Q Consensus 218 ~~~~~~~lg~~~~~~gd~~~A~~~~~~ 244 (325)
.+..|+.=|.-++..||+..|..++.=
T Consensus 38 mA~~Y~~Da~~fl~kGD~v~Ala~isY 64 (87)
T 2pmr_A 38 RALNYRDDSVYYLEKGDHITSFGCITY 64 (87)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445666667778888888888777653
No 299
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=37.37 E-value=2.2e+02 Score=25.19 Aligned_cols=24 Identities=17% Similarity=-0.020 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHh
Q psy10061 221 LAVALVLVQLARGDTVAAEKAFKE 244 (325)
Q Consensus 221 ~~~~lg~~~~~~gd~~~A~~~~~~ 244 (325)
+++..|......+.+.+|+..++.
T Consensus 255 A~y~~a~~~~~~~k~GeaIa~L~~ 278 (376)
T 3r9m_A 255 AYCYHGETLLASDKCGEAIRSLQE 278 (376)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Confidence 334444445555555555555544
No 300
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=37.09 E-value=1e+02 Score=21.33 Aligned_cols=59 Identities=14% Similarity=0.076 Sum_probs=38.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 185 AARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 185 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
-|..+...|+|=+|.+.++..=...+.......++-+....|..++..|+. |...+.++
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a 65 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKA 65 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHH
Confidence 344556668888888888776543322112334555666777778788887 77777775
No 301
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=36.82 E-value=1.6e+02 Score=23.40 Aligned_cols=62 Identities=8% Similarity=-0.071 Sum_probs=43.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--HHH----------cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 184 RAARMCVRVKEFDKAADLIRQEIGY--HQE----------SEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 184 ~lg~~~~~~g~~~~A~~~~~~al~~--~~~----------~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
--..+|...++|.+|+..++..++- -+. .-++....-.++.+|.++...|+.++|+.++...
T Consensus 67 Yk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 67 YESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 4556788889999999988887731 100 0123334456677888888899999999998874
No 302
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=36.68 E-value=1.4e+02 Score=22.79 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061 100 AKHLEQAIMMCKELNDLTDVENLAKQAAT 128 (325)
Q Consensus 100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~ 128 (325)
+..+..++..|.+.|+..+|-+...+|.+
T Consensus 125 ~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 125 ASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 56788889999999999999999888863
No 303
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.47 E-value=63 Score=23.52 Aligned_cols=13 Identities=0% Similarity=-0.082 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q psy10061 117 TDVENLAKQAATL 129 (325)
Q Consensus 117 ~eA~~~~~~A~~~ 129 (325)
++|..+..+|+.+
T Consensus 20 ~~AF~~Is~AL~~ 32 (116)
T 2dl1_A 20 KKAFLFVNKGLNT 32 (116)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 3444444444443
No 304
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=35.87 E-value=29 Score=23.87 Aligned_cols=27 Identities=19% Similarity=0.009 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10061 217 AIGRLAVALVLVQLARGDTVAAEKAFK 243 (325)
Q Consensus 217 ~~~~~~~~lg~~~~~~gd~~~A~~~~~ 243 (325)
..+..|+.=+.-++..||+..|..++.
T Consensus 33 ~mA~~Y~~Da~~fl~kGD~v~Ala~is 59 (86)
T 2oo2_A 33 RNIEAYISDSRYFLEKGDLVRAFECVV 59 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344556666777777788777776654
No 305
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=35.62 E-value=47 Score=22.31 Aligned_cols=28 Identities=4% Similarity=-0.147 Sum_probs=19.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 104 EQAIMMCKELNDLTDVENLAKQAATLFL 131 (325)
Q Consensus 104 ~~~~~~y~~~g~~~eA~~~~~~A~~~~~ 131 (325)
..+|.=|...|+|+.|+.+|+.++....
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~qI~ 43 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLDQMN 43 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 3455566667888888888888876543
No 306
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=32.64 E-value=37 Score=22.52 Aligned_cols=24 Identities=8% Similarity=-0.145 Sum_probs=15.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061 106 AIMMCKELNDLTDVENLAKQAATL 129 (325)
Q Consensus 106 ~~~~y~~~g~~~eA~~~~~~A~~~ 129 (325)
+|+.+...|++++++.++-+|+.+
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~V 46 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAV 46 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 455566666677777766666654
No 307
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=30.74 E-value=2.9e+02 Score=24.63 Aligned_cols=50 Identities=20% Similarity=0.020 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCC
Q psy10061 119 VENLAKQAATLFLEQ----GNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGED 173 (325)
Q Consensus 119 A~~~~~~A~~~~~~~----g~~~~aa~~l~~lg~~~~~~-~~~~A~~~y~~Al~~~~~~~ 173 (325)
++..|.+|+...+.- .-+. |.-+|..+... ++.+|++++-+|.+..+.-+
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYP-----YtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YN 330 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYP-----YTYLGGYYYRKKKYYEAIASWVDAGYVAGKYN 330 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHH-----HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhccCCccc-----hhhhhhhhhhcchHHHHHHHHHHHHHHHHHcC
Confidence 677777777665442 1222 34444444444 48888888888888777654
No 308
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=30.59 E-value=2.4e+02 Score=25.82 Aligned_cols=90 Identities=10% Similarity=0.028 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHhcCC----------ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---cc--cHHHHH
Q psy10061 155 SDAALTLYSRAADVAHGED----------NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE---SE--HLLAIG 219 (325)
Q Consensus 155 ~~~A~~~y~~Al~~~~~~~----------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~--~~~~~~ 219 (325)
.+.+.....++..+..... .........+.+-.+|.+.++.+-+...++ +++...- .. ......
T Consensus 142 le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k-~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 142 LSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFK-NFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHH-THHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHH-HhccCCCCcChhhCCccceE
Confidence 5667777777776654321 122233444666688999999998888864 4443211 11 234566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061 220 RLAVALVLVQLARGDTVAAEKAFKEW 245 (325)
Q Consensus 220 ~~~~~lg~~~~~~gd~~~A~~~~~~~ 245 (325)
.+++-+|.+++..++|.+|.+++..+
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A 246 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEA 246 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHH
Confidence 78888999999999999999999997
No 309
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=30.56 E-value=2.3e+02 Score=23.38 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhc-CC--ChhhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHH
Q psy10061 155 SDAALTLYSRAADVAHG-ED--NYKQAAEYISRAARMCV-RVKEFDKAADLIRQEIGYH 209 (325)
Q Consensus 155 ~~~A~~~y~~Al~~~~~-~~--~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~ 209 (325)
.+.|...|++|.++... .. ++....-++ +.+..|. -+++.++|..+.+++++-+
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaL-NfSVFyyEiln~~~~Ac~lAk~Afd~A 206 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLAL-NFSVFHYEIANSPEEAISLAKTTFDEA 206 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH-HHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 67899999999998864 22 333434333 4555555 5689999999888877643
No 310
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=29.71 E-value=67 Score=22.48 Aligned_cols=25 Identities=8% Similarity=-0.150 Sum_probs=14.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061 106 AIMMCKELNDLTDVENLAKQAATLF 130 (325)
Q Consensus 106 ~~~~y~~~g~~~eA~~~~~~A~~~~ 130 (325)
+|+.+...|+++.|+.++-+|+.+|
T Consensus 26 lGE~L~~~g~~e~av~Hf~nAl~Vc 50 (95)
T 1om2_A 26 LGEELLAQGDYEKGVDHLTNAIAVC 50 (95)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 4555555566666666666665543
No 311
>2jpw_A Troponin I, cardiac muscle; poly (L-proline) II helix, contractIle protein; HET: SEP; NMR {Synthetic}
Probab=29.51 E-value=19 Score=19.17 Aligned_cols=11 Identities=36% Similarity=0.649 Sum_probs=6.8
Q ss_pred CCCCCcccccc
Q psy10061 301 TCATPRPASIR 311 (325)
Q Consensus 301 ~~~~~~~~~~~ 311 (325)
+++.|+|++++
T Consensus 10 ~~~~PaP~p~R 20 (32)
T 2jpw_A 10 GEPQPAPAPVR 20 (32)
T ss_dssp SCCCCCCCCCC
T ss_pred CCCCCCCcccc
Confidence 45566666665
No 312
>2jpu_A ORF C02003 protein; solution structure, SSR10, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} PDB: 2q00_A
Probab=29.33 E-value=63 Score=24.05 Aligned_cols=31 Identities=32% Similarity=0.393 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHH
Q psy10061 32 EEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAAT 68 (325)
Q Consensus 32 ~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~ 68 (325)
+-|..++.+|..++.+ ||.-+|++-|.+|+.
T Consensus 5 ~lAe~yL~EA~ell~k------GD~vQAsEK~ykAae 35 (129)
T 2jpu_A 5 TSAEVYYEEAEEFLSK------GDLVQACEKYYKAAE 35 (129)
T ss_dssp CHHHHHHHHHHHHHHH------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC------CCHHHHHHHHHHHHH
Confidence 4577888888888876 788888887777654
No 313
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=27.17 E-value=3.6e+02 Score=24.52 Aligned_cols=54 Identities=15% Similarity=-0.077 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcC
Q psy10061 118 DVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGE 172 (325)
Q Consensus 118 eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~-~~~~A~~~y~~Al~~~~~~ 172 (325)
.++..|++|+.+.+..=.-.. .--|.-+|..+... ++.+|++++-+|.+..+.-
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~h-vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~Y 336 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEH-IYPYMYLAGYHCRNRNVREALQAWADTATVIQDY 336 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCC-SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHhcccCc-ccceeecchHHHHhhhHHHHHHHhhhhhhhhhhc
Confidence 356788888776554311000 11255555555544 4999999999998877654
No 314
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=26.44 E-value=2.1e+02 Score=21.56 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=11.2
Q ss_pred hcCCHHHHHHHHHHHHHHHH
Q psy10061 72 GAKSFQQCKEYLLKAANCYE 91 (325)
Q Consensus 72 ~~g~~~~A~~~~~~a~~~~~ 91 (325)
..|++++......+|.+|..
T Consensus 45 e~~d~~~k~~~i~KA~~Ii~ 64 (145)
T 1vh6_A 45 ENDDMERKNENLIKAQNIIQ 64 (145)
T ss_dssp HTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHH
Confidence 45555555555555555554
No 315
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.35 E-value=80 Score=22.97 Aligned_cols=13 Identities=8% Similarity=0.189 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q psy10061 155 SDAALTLYSRAAD 167 (325)
Q Consensus 155 ~~~A~~~y~~Al~ 167 (325)
+++|..+..+||.
T Consensus 19 h~~AF~~Is~AL~ 31 (116)
T 2dl1_A 19 YKKAFLFVNKGLN 31 (116)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 3334444444433
No 316
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.02 E-value=3.2e+02 Score=27.50 Aligned_cols=89 Identities=9% Similarity=-0.031 Sum_probs=50.1
Q ss_pred HHHHHHHhccC-HHHHHHHHHHHHHHHhcCC-----------------ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061 144 EKGAKSLEELK-SDAALTLYSRAADVAHGED-----------------NYKQAAEYISRAARMCVRVKEFDKAADLIRQE 205 (325)
Q Consensus 144 ~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~-----------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 205 (325)
.-+|.+|-..+ +++|..++++|..-..... ........|.++..++-+.+-|+-++...+.|
T Consensus 844 yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lA 923 (950)
T 4gq2_M 844 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 923 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34677777777 9999999988763221110 00111235666777777777777777777777
Q ss_pred HHHHHHcccHHHHHHHHHHHHHHHHhcC
Q psy10061 206 IGYHQESEHLLAIGRLAVALVLVQLARG 233 (325)
Q Consensus 206 l~~~~~~~~~~~~~~~~~~lg~~~~~~g 233 (325)
|.... .++.......+.++-..+.+.|
T Consensus 924 I~~~~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 924 DASKE-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred Hhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence 66432 1233333344555555544443
No 317
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=24.61 E-value=4e+02 Score=24.24 Aligned_cols=50 Identities=12% Similarity=-0.099 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCC
Q psy10061 119 VENLAKQAATLFLEQ----GNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGED 173 (325)
Q Consensus 119 A~~~~~~A~~~~~~~----g~~~~aa~~l~~lg~~~~~~-~~~~A~~~y~~Al~~~~~~~ 173 (325)
++..|.+|+...+.- .-+. |.-+|..+... ++.+|+.++-+|.+..+.-+
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYP-----YtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YN 352 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYP-----YMYLAGYHCRNRNVREALQAWADTATVIQDYN 352 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHH-----HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhccCCccc-----eeecchhhhhcchHHHHHHHHHHHHHHHHHcC
Confidence 667777777654442 2222 44444444444 48888888888888776644
No 318
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=22.61 E-value=1.7e+02 Score=22.11 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061 97 YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFL 131 (325)
Q Consensus 97 ~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~ 131 (325)
...|..+.+.|.+|...|+++.|.-+|-+.+.++.
T Consensus 37 lrta~~llr~A~~y~~egd~e~AYily~R~~~L~~ 71 (146)
T 2xze_A 37 FRSGVEIIRMASIYSEEGNIEHAFILYNKYITLFI 71 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34455555666777777777777777777766654
No 319
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=22.27 E-value=19 Score=30.43 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHH
Q psy10061 29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATC 69 (325)
Q Consensus 29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~ 69 (325)
+....|+++..+|.+.=+. ++|.+|..+|..+...
T Consensus 18 p~~~~Ai~lv~~AVe~D~~------g~y~eAl~lY~eaIe~ 52 (257)
T 2ymb_A 18 PQSTAAATVLKRAVELDSE------SRYPQALVCYQEGIDL 52 (257)
T ss_dssp -----------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHH
Confidence 4556666666666554443 5556665555554443
No 320
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=21.64 E-value=2.5e+02 Score=20.70 Aligned_cols=20 Identities=5% Similarity=0.240 Sum_probs=10.5
Q ss_pred hcCCHHHHHHHHHHHHHHHH
Q psy10061 72 GAKSFQQCKEYLLKAANCYE 91 (325)
Q Consensus 72 ~~g~~~~A~~~~~~a~~~~~ 91 (325)
..|++++......+|.++..
T Consensus 48 ~~~d~~~k~~~i~KA~~Ii~ 67 (131)
T 3iqc_A 48 ENEDIEKKIYYINRVTDIFT 67 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHH
Confidence 34555555555555555444
No 321
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=21.15 E-value=4.1e+02 Score=23.34 Aligned_cols=17 Identities=24% Similarity=0.139 Sum_probs=13.8
Q ss_pred cHHHHHHHHHHHHhhhc
Q psy10061 30 KKEEGMEYVKSAEKHLK 46 (325)
Q Consensus 30 ~~~eA~~l~~~A~~~~~ 46 (325)
..+.|..+|++|..++.
T Consensus 141 ~lK~A~~~fq~AAG~f~ 157 (376)
T 3r9m_A 141 EAKEVHRSLKIAAGIFK 157 (376)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47889999999887765
No 322
>3u8v_A Metal-binding protein SMBP; four helical bundle, metal chaperone; 1.90A {Nitrosomonas europaea}
Probab=21.03 E-value=2.1e+02 Score=19.72 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=20.7
Q ss_pred hhhhhHHHHHHhhchhc-----cccccccHHHHHHHHHHHHhhhcc
Q psy10061 7 KEEGMEYVKSAEKHSLS-----TMTSDRKKEEGMEYVKSAEKHLKT 47 (325)
Q Consensus 7 ~~~~~~~~~~ae~~~~~-----~~~~~~~~~eA~~l~~~A~~~~~~ 47 (325)
.+.+..|+..|+.+|.- --.....++++++.+++|.+.-+.
T Consensus 23 ~Gha~~LleHA~~aL~HAkaA~~~~~~~H~~~aIKhLeeAI~Hg~~ 68 (93)
T 3u8v_A 23 EGHTDQLLEHAKESLTHAKAASEAGGNTHVGHGIKHLEDAIKHGEE 68 (93)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhhc
Confidence 34455666666666551 111223566666666666665554
Done!