RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10061
(325 letters)
>gnl|CDD|222139 pfam13449, Phytase-like, Esterase-like activity of phytase. This
is a repeated domain that carries several highly
conserved Glu and Asp residues indicating the likelihood
that the domain incorporates the enzymic activity of the
PLC-like phospho-diesterase part of the proteins.
Length = 324
Score = 39.6 bits (93), Expect = 0.001
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 270 EGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPASIRQNAAP 316
EG R PF++ D++ RL R+LPLP+A P +R N
Sbjct: 103 EGDRSRGIPPFLRRFDLD-GRLLRELPLPAAFLPGPGKQGVRNNLGF 148
>gnl|CDD|227285 COG4949, COG4949, Uncharacterized membrane-anchored protein
conserved in bacteria [Function unknown].
Length = 424
Score = 33.3 bits (76), Expect = 0.14
Identities = 36/143 (25%), Positives = 57/143 (39%), Gaps = 30/143 (20%)
Query: 126 AATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVA-HG------------- 171
+ T ++ G R + +L + + EL++ AAL+LY A A G
Sbjct: 226 SITQRMKTGERRDSQALLAELTRLAAELEARAALSLYRFGASRAYDGIVLERLEALRETP 285
Query: 172 EDNYKQAAEYISR----AARMCVRVKE--------FDKAADLIRQEIGYHQESEH--LLA 217
++ E++ R A R C V+E +A L+R I E ++ LL
Sbjct: 286 VPGHETMGEFLERRLAPAMRTCQSVEERQANLSRKLARATALLRTWIDVELERQNQELLN 345
Query: 218 I--GRLAVALVLVQLARGDTVAA 238
R + L L Q G +VAA
Sbjct: 346 SMDARAQLQLRLQQTVEGLSVAA 368
>gnl|CDD|212579 cd11706, DHR2_DOCK2, Dock Homology Region 2, a GEF domain, of Class
A Dedicator of Cytokinesis 2. Dock2 is a hematopoietic
cell-specific, class A DOCK and is an atypical guanine
nucleotide exchange factor (GEF) that lacks the
conventional Dbl homology (DH) domain. As a GEF, it
activates small GTPases by exchanging bound GDP for free
GTP. It plays an important role in lymphocyte migration
and activation, T-cell differentiation, neutrophil
chemotaxis, and type I interferon induction. DOCK
proteins are divided into four classes (A-D) based on
sequence similarity and domain architecture; class A
includes Dock1, 2 and 5. All DOCKs contain two homology
domains: the DHR-1 (Dock homology region-1), also called
CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and
DHR-2 (also called CZH2 or Docker). The DHR-1 domain
binds phosphatidylinositol-3,4,5-triphosphate. This
alignment model represents the DHR-2 domain of Dock2,
which contains the catalytic GEF activity for Rac and/or
Cdc42. Class A DOCKs, like Dock2, are specific GEFs for
Rac and they contain an SH3 domain at the N-terminal
region and a PxxP motif at the C-terminus.
Length = 421
Score = 31.5 bits (71), Expect = 0.60
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Query: 45 LKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLE 104
L T LLKW + ++ T + ++ +Q KE L YET + K E
Sbjct: 47 LHTRLLKWSDEQCAS----QVMQTGQQHPQTQRQLKETL------YETIIGYFDKGKMWE 96
Query: 105 QAIMMCKEL-----NDLTDVENLAK 124
+AI +CKEL ++ D E L++
Sbjct: 97 EAISLCKELAEQYEMEIFDYELLSQ 121
>gnl|CDD|233013 TIGR00540, TPR_hemY_coli, heme biosynthesis-associated TPR protein.
Members of this protein family are uncharacterized
tetratricopeptide repeat (TPR) proteins invariably found
in heme biosynthesis gene clusters. The absence of any
invariant residues other than Ala argues against this
protein serving as an enzyme per se. The gene symbol
hemY assigned in E. coli is unfortunate in that an
unrelated protein, protoporphyrinogen oxidase (HemG in
E. coli) is designated HemY in Bacillus subtilis
[Unknown function, General].
Length = 367
Score = 31.5 bits (72), Expect = 0.60
Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 25/135 (18%)
Query: 122 LAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDN------- 174
LA AA ++ G+ + A ++E+ LK + L + G+ +
Sbjct: 245 LAVAAAEALIQLGDHDEAEKLIEEA------LKKEWDPELLRLYGRLQPGDPSPLIKRAE 298
Query: 175 -----YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQ 229
+ A + R+C+R + + KA + + E L + +L L
Sbjct: 299 KWLKKHPDDALLLLALGRLCLRQQLWGKAQSYLEASLSLAPTEEAHLELAQLFEQL---- 354
Query: 230 LARGDTVAAEKAFKE 244
GDT AA + +++
Sbjct: 355 ---GDTEAAAQHYRK 366
Score = 27.6 bits (62), Expect = 8.5
Identities = 36/173 (20%), Positives = 57/173 (32%), Gaps = 32/173 (18%)
Query: 100 AKHLEQAIMMCKELND----LTDVENLAKQAATLFLEQGNREAASTVLEKGAKS------ 149
+ E A+ L T V LA +A GN +A +L K+
Sbjct: 147 QRDYEAALAALDSLQAQAPRHTAVLRLALRAY---QRSGNWDALLKLLPALRKAKALSPE 203
Query: 150 -LEELKSDAALTLYSRAADVAHGEDNYKQAAEYISR-----------AARMCVRVKEFDK 197
L+ A + L A D K + + R AA +++ + D+
Sbjct: 204 EAARLEQQAYIGLLDEAR--EEDADALKTWWKQLPRAERQEPELAVAAAEALIQLGDHDE 261
Query: 198 AADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCE 250
A LI + + + E L GRL + R AEK K+ +
Sbjct: 262 AEKLIEEALKKEWDPELLRLYGRLQPGDPSPLIKR-----AEKWLKKHPDDAL 309
>gnl|CDD|107250 cd01537, PBP1_Repressors_Sugar_Binding_like, Ligand-binding domain
of the LacI-GalR family of transcription regulators and
the sugar-binding domain of ABC-type transport systems.
Ligand-binding domain of the LacI-GalR family of
transcription regulators and the sugar-binding domain of
ABC-type transport systems, all of which contain the
type I periplasmic binding protein-like fold. Their
specific ligands include lactose, ribose, fructose,
xylose, arabinose, galactose/glucose, and other sugars.
The LacI family of proteins consists of transcriptional
regulators related to the lac repressor; in general the
sugar binding domain in this family binds a sugar, which
in turn changes the DNA binding activity of the
repressor domain. The core structure of the periplasmic
binding proteins is classified into two types and they
differ in number and order of beta strands in each
domain: type I, which has six beta strands, and type II,
which has five beta strands. These two distinct
structural arrangements may have originated from a
common ancestor.
Length = 264
Score = 30.0 bits (68), Expect = 1.4
Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 213 EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAFDEEDPEGA 272
EHL G +AL+ L FK+ EA + E +L + D E
Sbjct: 111 EHLAEKGHRRIALLAGPLGSSTARERVAGFKDA--LKEAGPI---EIVLVQEGDWDAEKG 165
Query: 273 RQALND 278
QA +
Sbjct: 166 YQAAEE 171
>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat.
Length = 78
Score = 27.7 bits (62), Expect = 2.0
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 117 TDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTL--YSRAADVAHGEDN 174
D+ A + G+ + A +LEK + EL D T + A + +
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61
Query: 175 YKQAAEYISRAARMC 189
Y +A EY+ +A +
Sbjct: 62 YDEALEYLEKALALR 76
>gnl|CDD|227301 COG4966, PilW, Tfp pilus assembly protein PilW [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 318
Score = 29.8 bits (67), Expect = 2.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 160 TLYSRAADVAHGEDNYKQAAEYISRAARM 188
LY+ AD A ++N + A E I+R RM
Sbjct: 43 QLYTTLADRASLQENGRFALELITRDLRM 71
>gnl|CDD|216037 pfam00637, Clathrin, Region in Clathrin and VPS. Each region is
about 140 amino acids long. The regions are composed of
multiple alpha helical repeats. They occur in the arm
region of the Clathrin heavy chain.
Length = 143
Score = 28.7 bits (65), Expect = 2.2
Identities = 27/132 (20%), Positives = 41/132 (31%), Gaps = 22/132 (16%)
Query: 60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDV 119
D S+ F+ ++ YL A A A + K D +
Sbjct: 7 PIDISRVVKLFEKRGLLEELIPYLESALKENSRENPALQTA----LLELYAKY-EDPEKL 61
Query: 120 ENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYS------RAADVAHGED 173
E K+ + E + + EK A EE A+ LY A +
Sbjct: 62 EEFLKK-----NNNYDLEKVAKLCEK-ADLYEE-----AVILYKKNGNYKEAISLLKKLK 110
Query: 174 NYKQAAEYISRA 185
YK A EY ++
Sbjct: 111 LYKDAIEYAVKS 122
>gnl|CDD|235168 PRK03868, PRK03868, glucose-6-phosphate isomerase; Provisional.
Length = 410
Score = 29.5 bits (67), Expect = 2.3
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 5/33 (15%)
Query: 71 KGAKS-----FQQCKEYLLKAANCYETNKSAYH 98
+GAK+ F+Q ++++LK A Y T+K+AY+
Sbjct: 203 EGAKACKDSFFEQKEDHILKKAYFYATHKNAYN 235
>gnl|CDD|212566 cd11684, DHR2_DOCK, Dock Homology Region 2, a GEF domain, of
Dedicator of Cytokinesis proteins. DOCK proteins
comprise a family of atypical guanine nucleotide
exchange factors (GEFs) that lack the conventional Dbl
homology (DH) domain. As GEFs, they activate the small
GTPases Rac and Cdc42 by exchanging bound GDP for free
GTP. They are also called the CZH (CED-5, Dock180, and
MBC-zizimin homology) family, after the first family
members identified. Dock180 was first isolated as a
binding partner for the adaptor protein Crk. The
Caenorhabditis elegans protein, Ced-5, is essential for
cell migration and phagocytosis, while the Drosophila
ortholog, Myoblast city (MBC), is necessary for myoblast
fusion and dorsal closure. DOCKs are divided into four
classes (A-D) based on sequence similarity and domain
architecture: class A includes Dock1 (or Dock180), 2 and
5; class B includes Dock3 and 4; class C includes Dock6,
7, and 8; and class D includes Dock9, 10 and 11. All
DOCKs contain two homology domains: the DHR-1 (Dock
homology region-1), also called CZH1, and DHR-2 (also
called CZH2 or Docker). This alignment model represents
the DHR-2 domain of DOCK proteins, which contains the
catalytic GEF activity for Rac and/or Cdc42.
Length = 392
Score = 29.6 bits (67), Expect = 2.5
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 12/67 (17%)
Query: 48 SLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLL-KAANCYETNKSAYHAAKHLEQA 106
L W A + F SF++ KE L KA + ++ K E A
Sbjct: 32 DLYAW---DLKALVPALAESLSFPEQTSFER-KEALYKKAIDLFDK-------GKAWEFA 80
Query: 107 IMMCKEL 113
I + KEL
Sbjct: 81 IALYKEL 87
>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import
receptor (72 kDa mitochondrial outermembrane protein)
(mitochondrial import receptor for the ADP/ATP carrier)
(translocase of outermembrane tom70). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 615
Score = 29.6 bits (66), Expect = 2.6
Identities = 42/186 (22%), Positives = 74/186 (39%), Gaps = 45/186 (24%)
Query: 53 KPDYDSAADDYSKA---------------ATCFKGAK------SFQQCKEYLLKAANCYE 91
K ++ A DY K+ T +K +F++CK+ +A + Y
Sbjct: 412 KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYN 471
Query: 92 ------TNKSAYHAA-KHLEQAIMMCKELNDLT-DVENLAKQAATLFLEQGNREAASTVL 143
+++ + A + + AI + KE + +V L +A LF + + A +
Sbjct: 472 YYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531
Query: 144 EKGAK---------------SLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARM 188
EK L++ D AL L+ RAA++A E QA Y + A R
Sbjct: 532 EKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQAISY-AEATRT 590
Query: 189 CVRVKE 194
++V+E
Sbjct: 591 QIQVQE 596
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 29.6 bits (67), Expect = 2.7
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 111 KELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADV-A 169
+ L D+ + L + RE ++ + +++EE K + A L RAA++ A
Sbjct: 496 ERLERAEDLVEAEDRIERL---EERREDLEELIAERRETIEE-KRERAEELRERAAELEA 551
Query: 170 HGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEI 206
E+ + AAE A V E + +++ I
Sbjct: 552 EAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERI 588
>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional.
Length = 661
Score = 29.6 bits (66), Expect = 2.7
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 49 LLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIM 108
LL KP D D + + A + +QC +Y + +C ++K ++ I
Sbjct: 505 LLCHKPTLDCVIDSLREISNIVDNAYAIKQCIKYAMIIDDCT-SSKIPESISQRYNDYID 563
Query: 109 MC-KELNDLTDV 119
+C +ELN++ +
Sbjct: 564 LCNQELNEMKKI 575
>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat
lipoprotein. This protein family occurs in strictly
within a subset of Gram-negative bacterial species with
the proposed PEP-CTERM/exosortase system, analogous to
the LPXTG/sortase system common in Gram-positive
bacteria. This protein occurs in a species if and only
if a transmembrane histidine kinase (TIGR02916) and a
DNA-binding response regulator (TIGR02915) also occur.
The present of tetratricopeptide repeats (TPR) suggests
protein-protein interaction, possibly for the regulation
of PEP-CTERM protein expression, since many PEP-CTERM
proteins in these genomes are preceded by a proposed DNA
binding site for the response regulator.
Length = 899
Score = 29.3 bits (66), Expect = 3.7
Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 34/169 (20%)
Query: 95 SAYHAAKHLEQAIMMCKELNDLTDVENLAKQA----ATLFLEQGNREAASTVLEKGAKSL 150
Y L++A+ + LN+ D + +A L G+ A + +K L
Sbjct: 575 QYYLGKGQLKKALAI---LNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKK----L 627
Query: 151 EELKSDAALTLYSRAADVAHGEDNYKQAAEYISRA--------------ARMCVRVKEFD 196
L+ D+AL L AD NY +A + RA A++ + K +
Sbjct: 628 LALQPDSALALL-LLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTE 686
Query: 197 KAADLIRQEIGYHQESEHLLAI-GRLAVALVLVQLARGDTVAAEKAFKE 244
A + + H ++ + G L L + D AA +A+++
Sbjct: 687 SAKKIAKSLQKQHPKAALGFELEGDLY-------LRQKDYPAAIQAYRK 728
>gnl|CDD|153336 cd07652, F-BAR_Rgd1, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae
Rho GTPase activating protein Rgd1 and similar proteins.
F-BAR domains are dimerization modules that bind and
bend membranes and are found in proteins involved in
membrane dynamics and actin reorganization.
Saccharomyces cerevisiae Rgd1 is a GTPase activating
protein (GAP) with activity towards Rho3p and Rho4p,
which are involved in bud growth and cytokinesis,
respectively. At low pH, S. cerevisiae Rgd1 is required
for cell survival and the activation of the protein
kinase C pathway, which is important in cell integrity
and the maintenance of cell shape. It contains an
N-terminal F-BAR domain and a C-terminal Rho GAP domain.
The F-BAR domain of S. cerevisiae Rgd1 binds to
phosphoinositides and plays an important role in the
localization of the protein to the bud tip/neck during
the cell cycle. F-BAR domains form banana-shaped dimers
with a positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 234
Score = 28.5 bits (64), Expect = 3.9
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 26 TSDRKKEEGMEYVKSAEKHLK---TSLLKWKPDYDSAADDYSKAATC---------FKGA 73
T ++ ++ E K AEK ++ + K K YDS ADD + T KG
Sbjct: 101 TVEKSRKSIKETGKRAEKKVQDAEAAAEKAKARYDSLADDLERVKTGDPGKKLKFGLKGN 160
Query: 74 KSF-QQCKEYLLKAANCYETNKSAYHAAKHLEQAIMM 109
KS Q E L K + S +AA+ L Q ++
Sbjct: 161 KSAAQHEDELLRKVQAADQDYASKVNAAQALRQELLS 197
>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the
Serine/Threonine Kinases, TDY Mitogen-Activated Protein
Kinases from Plants. Serine/Threonine Kinases (STKs),
Plant TDY Mitogen-Activated Protein Kinase (MAPK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The TDY
MAPK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKs are important mediators of cellular
responses to extracellular signals. In plants, MAPKs are
associated with physiological, developmental, hormonal,
and stress responses. Some plants show numerous gene
duplications of MAPKs. Arabidopsis thaliana harbors at
least 20 MAPKs, named AtMPK1-20. Oryza sativa contains
at least 17 MAPKs. There are two subtypes of plant MAPKs
based on the conserved phosphorylation motif present in
the activation loop, TEY and TDY. Arabidopsis thaliana
contains more TEY-type MAPKs than TDY-type, whereas the
reverse is true for Oryza sativa. This subfamily
represents the TDY subtype and is composed of Group D
plant MAPKs including Arabidopsis thaliana MPK18
(AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1
(OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1),
Zea mays MPK6, and the Medicago sativa TDY1 gene
product. OsBWMK1 enhances resistance to pathogenic
infections. It mediates stress-activated defense
responses by activating a transcription factor that
affects the expression of stress-related genes. AtMPK18
is involved in microtubule-related functions.
Length = 338
Score = 28.6 bits (64), Expect = 4.7
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 257 LEKLLQAFDEEDPEGARQALNDPFIK 282
LE+LL AFD +D A +AL DP+ K
Sbjct: 270 LERLL-AFDPKDRPTAEEALADPYFK 294
>gnl|CDD|213817 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively [Cellular processes,
Chemotaxis and motility].
Length = 411
Score = 28.2 bits (64), Expect = 6.9
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 182 ISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIG 219
ISR V + A +Q + +QE+ L++IG
Sbjct: 334 ISRVMPDVVSPEHRQAARRF-KQLLSRYQENRDLISIG 370
>gnl|CDD|132368 TIGR03325, BphB_TodD, cis-2,3-dihydrobiphenyl-2,3-diol
dehydrogenase. Members of this family occur as the BphD
protein of biphenyl catabolism and as the TodD protein
of toluene catabolism. Members catalyze the second step
in each pathway and proved interchangeable when tested;
the first and fourth enzymes in each pathway confer
metabolic specificity. In the context of biphenyl
degradation, the enzyme acts as
cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC
1.3.1.56), while in toluene degradation it acts as
cis-toluene dihydrodiol dehydrogenase.
Length = 262
Score = 27.8 bits (62), Expect = 7.6
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 130 FLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISR 184
F+ +G R A VL+K A L+EL++ + DV +D+ + A ++
Sbjct: 25 FVAEGARVA---VLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAA 76
>gnl|CDD|217864 pfam04053, Coatomer_WDAD, Coatomer WD associated region. This
region is composed of WD40 repeats.
Length = 429
Score = 27.9 bits (63), Expect = 9.0
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTL 161
+L+ A+ + KEL+D + L A L QGN + A +K AK ++L L L
Sbjct: 319 NLDVALEIAKELDDEHKWKRLGDAA----LSQGNIKLAEEAYQK-AKDFDKL-----LLL 368
Query: 162 YS 163
Y
Sbjct: 369 YL 370
>gnl|CDD|237767 PRK14612, PRK14612, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 276
Score = 27.4 bits (61), Expect = 9.8
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 117 TDVENLAKQAATLFLEQ-GNREAASTVLEKG---AKSLEELKSDAALTL 161
TD NL +AA +L+ G LEK A L SDAA TL
Sbjct: 61 TDERNLVYRAARAYLDAAGQPGGVRITLEKRLPLAAGLGGGSSDAAATL 109
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.126 0.354
Gapped
Lambda K H
0.267 0.0725 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,931,973
Number of extensions: 1515317
Number of successful extensions: 1435
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1427
Number of HSP's successfully gapped: 68
Length of query: 325
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 228
Effective length of database: 6,635,264
Effective search space: 1512840192
Effective search space used: 1512840192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.5 bits)