RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10061
(325 letters)
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 202 bits (514), Expect = 3e-63
Identities = 108/291 (37%), Positives = 171/291 (58%), Gaps = 3/291 (1%)
Query: 27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKA 86
+ +K E E++ AEK+LKTS +KWKPDYDSAA +Y+KAA FK AK +Q K+ L+
Sbjct: 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQE 62
Query: 87 ANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKG 146
A + N+S +HAAK EQA MM K+L + + ++A+ +++E G + A+ L++
Sbjct: 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122
Query: 147 AKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEI 206
K +E L A+ LY +AA V E+ +QAAE I +A+R+ VR ++FD+AA +++E
Sbjct: 123 GKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182
Query: 207 GYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNC---CEAPEVQTLEKLLQA 263
++E E+ + +A VLVQL R D VAA+K +E + + + LE LLQA
Sbjct: 183 SMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQA 242
Query: 264 FDEEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPASIRQNA 314
+DE+D E + P + +MD +Y++LA L +P +P++
Sbjct: 243 YDEQDEEQLLRVCRSPLVTYMDNDYAKLAISLKVPGGGGGKKKPSASASAQ 293
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 128 bits (322), Expect = 4e-35
Identities = 51/261 (19%), Positives = 96/261 (36%), Gaps = 16/261 (6%)
Query: 33 EGMEYVKSAEKHLKTSLLKWK-------PDYDSAADDYSKAATCFKGAKSFQQCKEYLLK 85
+ +E +K AEK S K ++ AAD +AAT ++ K + LK
Sbjct: 3 DPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLK 62
Query: 86 AANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEK 145
AA+ + + A +A K + + + + A +F +G + +
Sbjct: 63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122
Query: 146 GAKSLEELKSDA--ALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIR 203
+ LE D A+ Y A + + + + + + A + ++ +A+D+
Sbjct: 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYS 182
Query: 204 QEIGY--HQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW----GNCCEAPEVQTL 257
+ I L QLA D VAA + +E N ++ E L
Sbjct: 183 KLIKSSMGNRLSQWSLKDYFLKK-GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFL 241
Query: 258 EKLLQAFDEEDPEGARQALND 278
+ L+ A +E D E + +
Sbjct: 242 KSLIDAVNEGDSEQLSEHCKE 262
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 47.7 bits (113), Expect = 2e-06
Identities = 24/193 (12%), Positives = 47/193 (24%), Gaps = 21/193 (10%)
Query: 55 DYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKE-- 112
+ + + + + L++ + A + E+A + E
Sbjct: 68 ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH 127
Query: 113 LNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGE 172
L L E L + A L + A G + L + L + +
Sbjct: 128 LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 187
Query: 173 DNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLAR 232
+ A ++R + H I V+
Sbjct: 188 GDLDNARSQLNRLENLL-------------------GNGKYHSDWISNANKVRVIYWQMT 228
Query: 233 GDTVAAEKAFKEW 245
GD AA +
Sbjct: 229 GDKAAAANWLRHT 241
Score = 41.5 bits (97), Expect = 2e-04
Identities = 25/213 (11%), Positives = 59/213 (27%), Gaps = 25/213 (11%)
Query: 55 DYDSAADDYSKA---ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCK 111
+A + KA + ++A + + A I +
Sbjct: 108 FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD-EAEASARSGIEVLS 166
Query: 112 ELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRA--ADVA 169
++ LA L +G+ + A + L + L K + +
Sbjct: 167 SYQPQQQLQCLA-MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 225
Query: 170 HGEDNYKQAAEYISRA------------------ARMCVRVKEFDKAADLIRQEIGYHQE 211
+ AA ++ AR + + EF+ A ++ + +
Sbjct: 226 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS 285
Query: 212 SEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 244
+ + R + L + G A++ +
Sbjct: 286 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 318
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 2e-04
Identities = 55/365 (15%), Positives = 90/365 (24%), Gaps = 107/365 (29%)
Query: 6 KKEEGMEYVKSAEKHSLSTMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSK 65
+ V+ K LS KEE + S + T L W
Sbjct: 30 VDNFDCKDVQDMPKSILS-------KEEIDHIIMSKDAVSGTLRLFWT------------ 70
Query: 66 AATCFKGAKSFQQCKEYLLKAANCYETNKSAYHA---AKHLEQAIMMCKELNDL-TDVEN 121
K + Q+ E +L+ N Y+ S + M ++ + L D +
Sbjct: 71 --LLSKQEEMVQKFVEEVLRI-N-YKFLMSPIKTEQRQPSMMT-RMYIEQRDRLYNDNQV 125
Query: 122 LAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLY--------SRAADVAHGED 173
AK + R L + L EL+ + + A DV
Sbjct: 126 FAKYNVS-------RLQPYLKLRQA---LLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 174 ---------------NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE----- 213
N + ++ ++ + I S
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 214 HLLAIGRLAVAL-VLVQLARGDTVAAEKAFKEWGNCC-----------------EAPEVQ 255
LL L VL V KA+ + C
Sbjct: 236 RLLKSKPYENCLLVL------LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 256 TLEKLLQAFDEEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPR-----PASI 310
+L+ ++ + +K++D DLP PR SI
Sbjct: 290 SLDHHSMTLTPDEVKSL-------LLKYLDCRPQ----DLP-REVLTTNPRRLSIIAESI 337
Query: 311 RQNAA 315
R A
Sbjct: 338 RDGLA 342
Score = 27.9 bits (61), Expect = 5.2
Identities = 47/340 (13%), Positives = 98/340 (28%), Gaps = 67/340 (19%)
Query: 2 TSDRK---KEEGMEYVKSAEKHSLSTMTSDRKKEEGME----YVKSAEKHLKTSLLKWKP 54
T ++ + H T+T +E Y+ + L +L P
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLT----PDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 55 DYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKEL- 113
S A + G ++ K +S+ LE A +++
Sbjct: 328 RRLSII-----AESIRDGLATWDNWKHVNCDKLT--TIIESSL---NVLEPAEY--RKMF 375
Query: 114 NDLT----DVENLAKQAATLFLEQGNREAASTVLEKGAKS--LEELKSDAALTLYSRAAD 167
+ L+ ++ +L + V+ K K +E+ ++ +++ S +
Sbjct: 376 DRLSVFPPSA-HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 168 VAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIR----QEIGYH----QESEHLLAIG 219
+ +N I + D + IG+H + E +
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 220 RLAVALVLVQLA-RGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAFDEEDPEGARQALND 278
+ + ++ R D+ A W + TL++L
Sbjct: 495 MVFLDFRFLEQKIRHDSTA-------W--NASGSILNTLQQL--------------KFYK 531
Query: 279 PFIKHMDVEYSRLARD----LPLPSATCATPRPASIRQNA 314
P+I D +Y RL LP + + + A
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 3e-04
Identities = 57/348 (16%), Positives = 95/348 (27%), Gaps = 126/348 (36%)
Query: 45 LKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLE 104
L L +++ Y D ++ AA + + + L+K Y A +
Sbjct: 84 LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK---NY------ITARIMAK 134
Query: 105 QAIMMCKELNDLTDVENLAKQAATLFLE---QGNREAASTVLEKGAKSLEELKS------ 155
+ + L + + A L QGN + EEL+
Sbjct: 135 RPFDKKSN-SAL--FRAVGEGNAQLVAIFGGQGNTDDY----------FEELRDLYQTYH 181
Query: 156 --------DAALTLYSRAADVAHGEDNYK------------------------------- 176
+A TL E +
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI 241
Query: 177 ---QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARG 233
Q A Y+ A + E ++ G+ S+ L+ AVA +A
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGEL---RSYLKGATGH---SQGLVT----AVA-----IAET 286
Query: 234 DT-----VAAEKA----FKEW-GNCC-EAPEVQTLEKLLQAFDEEDPEGARQALNDPFIK 282
D+ V+ KA F + G C EA +L + E+ EG P
Sbjct: 287 DSWESFFVSVRKAITVLF--FIGVRCYEAYPNTSLPPSILEDSLENNEGV------P--S 336
Query: 283 HMDVEYSRLA-RDLPLP------SATCAT-PRPASIR---QNAAPSYV 319
M L+ +L + T + P + N A + V
Sbjct: 337 PM------LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378
Score = 38.5 bits (89), Expect = 0.003
Identities = 30/208 (14%), Positives = 59/208 (28%), Gaps = 56/208 (26%)
Query: 105 QAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDA--ALTLY 162
Q M +L + A ++ A + + S+ ++ + LT++
Sbjct: 1627 QEQGMGMDLYKTSKA------AQDVW-----NRADNHFKDTYGFSILDIVINNPVNLTIH 1675
Query: 163 SRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLA 222
+NY A + + K F + + ++ LL+ +
Sbjct: 1676 FGGEKGKRIRENY-SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG--LLSATQFT 1732
Query: 223 -VALVLVQLARGDTVAAEKAFKEWGN------------------CCEAPEVQTLE----- 258
AL L++ AA + K G A +V ++E
Sbjct: 1733 QPALTLME------KAAFEDLKSKGLIPADATFAGHSLGEYAALASLA-DVMSIESLVEV 1785
Query: 259 -----KLLQAFDEEDPEGARQ----ALN 277
+Q D G A+N
Sbjct: 1786 VFYRGMTMQVAVPRDELGRSNYGMIAIN 1813
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 40.1 bits (93), Expect = 6e-04
Identities = 20/149 (13%), Positives = 47/149 (31%), Gaps = 2/149 (1%)
Query: 55 DYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELN 114
Y + + FQQ ++ A + L++ +
Sbjct: 90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI 149
Query: 115 DLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAAL--TLYSRAADVAHGE 172
D+ + A ++ E G + + E+ K LE L + + A + +
Sbjct: 150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD 209
Query: 173 DNYKQAAEYISRAARMCVRVKEFDKAADL 201
Y+++ +++A + R+ L
Sbjct: 210 SRYEESLYQVNKAIEISCRINSMALIGQL 238
Score = 31.3 bits (70), Expect = 0.41
Identities = 11/103 (10%), Positives = 28/103 (27%), Gaps = 1/103 (0%)
Query: 55 DYDSAADDYSKAATCFKGAKSFQQCK-EYLLKAANCYETNKSAYHAAKHLEQAIMMCKEL 113
D + + + ++ + A + + + +AI + +
Sbjct: 170 YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229
Query: 114 NDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSD 156
N + + L Q + EA K A ++
Sbjct: 230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 37.5 bits (87), Expect = 0.005
Identities = 23/161 (14%), Positives = 51/161 (31%), Gaps = 22/161 (13%)
Query: 55 DYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELN 114
D A + + KAA + K + + ++ A + +E+ + +
Sbjct: 237 DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQ-KAFQFIEEGLDHITARS 295
Query: 115 DLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDN 174
+ L ++ E + +L K + L + AA V +
Sbjct: 296 H-KFYKELFLFLQAVYKETVDERKIHDLLSYFEK--KNLHAYIE-ACARSAAAVFESSCH 351
Query: 175 YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL 215
++QAA + + K +++I + E L
Sbjct: 352 FEQAAAF-------------YRKVLK-AQEDI---LKGECL 375
Score = 35.2 bits (81), Expect = 0.024
Identities = 25/179 (13%), Positives = 54/179 (30%), Gaps = 23/179 (12%)
Query: 39 KSAEKHLKTSLLKWK--PDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNK-- 94
A + + + + D A+ + K A + K ++L+A + Y+ +
Sbjct: 118 VEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY 177
Query: 95 ------------SAYH-------AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGN 135
Y A HLE A+ + ++ + + A + G+
Sbjct: 178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD 237
Query: 136 REAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE 194
+ A +K AK E D + + ++A ++I
Sbjct: 238 DQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSH 296
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, blood
clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Length = 464
Score = 36.5 bits (84), Expect = 0.010
Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 123 AKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYI 182
A Q G+ + A+ L + E + + + + +V +A +
Sbjct: 385 AIQEGLDAQAAGDLDTATARLGRAMDLAVESGHEDTVKMLRKVTEVDPATSK-VRAKAKV 443
Query: 183 SRAARMCVRV 192
+ M + V
Sbjct: 444 DKGDAMELDV 453
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 35.3 bits (82), Expect = 0.013
Identities = 15/172 (8%), Positives = 42/172 (24%), Gaps = 22/172 (12%)
Query: 95 SAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK 154
+A+ A + L ++ + A + + ++
Sbjct: 1 AAFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG 60
Query: 155 SDAAL-TLYSRAADVAHGEDNYKQAAEYISRAARMCVRV--------------------- 192
A + V N+ A + +
Sbjct: 61 DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF 120
Query: 193 KEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 244
+ A + + Y Q+++ +AI L + + + A++ +
Sbjct: 121 GDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172
Score = 28.0 bits (63), Expect = 2.9
Identities = 23/179 (12%), Positives = 46/179 (25%), Gaps = 49/179 (27%)
Query: 76 FQQCKEYLLKAANCYETNK------SAYH--------------AAKHLEQAIMMCKELND 115
F + + + + A H A + + + L +
Sbjct: 42 FDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE 101
Query: 116 LTDVENLAKQAATL------FLEQGNREAASTVLEKGAKSLEEL--KSDAALTLYSRAAD 167
+ +A L G+ A EK ++ + A + D
Sbjct: 102 -----DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACA-FRGLGD 155
Query: 168 VAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY-HQESEHLLAIGRLAVAL 225
+A E N +A ++ RA I E+ +E + + L
Sbjct: 156 LAQQEKNLLEAQQHWLRARD--------------IFAELEDSEAVNELMTRLNGLEHHH 200
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 34.2 bits (79), Expect = 0.047
Identities = 24/165 (14%), Positives = 44/165 (26%), Gaps = 18/165 (10%)
Query: 62 DYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYH-------AAKHLEQAIMMCKELN 114
D + F+ + Q E L + Y +AY A ++ + + + +
Sbjct: 24 DCRAGVSFFE--AAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 81
Query: 115 DLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL--KSDAALTLYSRAADVAHGE 172
D + GN + A ++ EL K A LY+ +V H +
Sbjct: 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL-GNVYHAK 140
Query: 173 DNYKQAAEYISRAARMCVRVKEFDKAADL------IRQEIGYHQE 211
A D + +G
Sbjct: 141 GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAA 185
Score = 29.2 bits (66), Expect = 1.7
Identities = 27/156 (17%), Positives = 50/156 (32%), Gaps = 30/156 (19%)
Query: 99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL--KSD 156
A EQ +++ KE D ++ G E AS +K +L ++
Sbjct: 206 AVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 265
Query: 157 AALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVK--------------------EFD 196
A + YS + +Y++A +Y + + + D
Sbjct: 266 EAQSCYSL-GNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324
Query: 197 KAADL------IRQEIGY-HQESEHLLAIGRLAVAL 225
+A I +E+G E L + L + L
Sbjct: 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVL 360
Score = 28.0 bits (63), Expect = 4.2
Identities = 20/119 (16%), Positives = 40/119 (33%), Gaps = 9/119 (7%)
Query: 99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL--KSD 156
A + + + + +ELND + GN + A EK + E+ KS
Sbjct: 286 AIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSG 345
Query: 157 AALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL 215
+ + +Y +S E D + + +R ++G E++
Sbjct: 346 ELTARLNLSDLQMVLGLSYSTNNSIMSENT-------EIDSSLNGVRPKLGRRHSMENM 397
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 34.0 bits (78), Expect = 0.060
Identities = 13/102 (12%), Positives = 32/102 (31%), Gaps = 6/102 (5%)
Query: 62 DYSKAATCFKGAKSFQQCKEYLLKA----ANCYETNKSAYHAAKHLEQAIMMCKELNDLT 117
KA K ++ ++ + + ++ +
Sbjct: 279 KIDKAHEYHS--KGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYA 336
Query: 118 DVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAAL 159
D+E+ A A + E+ N + AS K + + ++ +L
Sbjct: 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSL 378
Score = 33.3 bits (76), Expect = 0.089
Identities = 23/168 (13%), Positives = 49/168 (29%), Gaps = 28/168 (16%)
Query: 41 AEKHLKTSLLKWK--PDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKS--- 95
A H + + + C ++ Y +A +E +
Sbjct: 203 AISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262
Query: 96 ---AYH--------------AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREA 138
AY A ++ + + ++ D + + +L+L + EA
Sbjct: 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD-VIYLSEFEFLKSLYLSGPDEEA 321
Query: 139 ASTVLEKGAKSLEELKSDAAL-TLYSRAADVAHGEDNYKQAAEYISRA 185
++ LE A L A H N+++A+ Y +
Sbjct: 322 ----IQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKV 365
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 33.8 bits (78), Expect = 0.062
Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 11/96 (11%)
Query: 99 AAKHLEQAIMMCKELNDLTDV----ENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL- 153
AA+H ++ + + EL + +L + A + +EL
Sbjct: 282 AAEHYKRTLALAVELGEREVEAQSCYSL----GNTYTLLHEFNTAIEYHNRHLAIAQELG 337
Query: 154 -KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARM 188
+ A +S + +++A +Y + ++
Sbjct: 338 DRIGEARACWS-LGNAHSAIGGHERALKYAEQHLQL 372
Score = 32.3 bits (74), Expect = 0.23
Identities = 13/139 (9%), Positives = 34/139 (24%), Gaps = 27/139 (19%)
Query: 99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAA 158
+ + + + G+ A + ++ E +
Sbjct: 27 GTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLS 86
Query: 159 LTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVK--------------------EFDKA 198
YS+ + +Y +A +Y + + FD+A
Sbjct: 87 AI-YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEA 145
Query: 199 ADL------IRQEIGYHQE 211
A + +++G
Sbjct: 146 AICCERHLTLARQLGDRLS 164
Score = 31.1 bits (71), Expect = 0.49
Identities = 28/174 (16%), Positives = 56/174 (32%), Gaps = 35/174 (20%)
Query: 99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAA 158
A + ++ + + ++L D + G+ +AA ++ + E AA
Sbjct: 202 AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA 261
Query: 159 L-TLYSRAADVAHGEDNYKQAAEYISRAARMCVRV--------------------KEFDK 197
S + ++ AAE+ R + V + EF+
Sbjct: 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNT 321
Query: 198 AADL------IRQEIGYH-QESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 244
A + I QE+G E+ ++G A+ G A K ++
Sbjct: 322 AIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAI-------GGHERALKYAEQ 368
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.063
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 6/26 (23%)
Query: 144 EKGAKSLEELKSDAALTLYSRAADVA 169
EK ++L++L++ +L LY A D A
Sbjct: 18 EK--QALKKLQA--SLKLY--ADDSA 37
Score = 31.8 bits (71), Expect = 0.13
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 39 KSAEKHLKTSLLKWKPDYDSA 59
K A K L+ SL + DSA
Sbjct: 19 KQALKKLQASLKLYAD--DSA 37
Score = 26.5 bits (57), Expect = 8.3
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 7/29 (24%)
Query: 253 EVQTLEKL---LQAFDEEDPEGARQ-ALN 277
E Q L+KL L+ + + A A+
Sbjct: 18 EKQALKKLQASLKLY---ADDSAPALAIK 43
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 31.1 bits (71), Expect = 0.50
Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 18/130 (13%)
Query: 99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL--KSD 156
A EQ +++ KE D ++ G E AS +K +L ++
Sbjct: 202 AVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 261
Query: 157 AALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH-QESEHL 215
A + YS + +Y++A +Y + I QE+ E
Sbjct: 262 EAQSCYSL-GNTYTLLQDYEKAIDYHLKHLA--------------IAQELKDRIGEGRAC 306
Query: 216 LAIGRLAVAL 225
++G AL
Sbjct: 307 WSLGNAYTAL 316
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A
{Thermococcus SP}
Length = 526
Score = 30.6 bits (68), Expect = 0.76
Identities = 14/86 (16%), Positives = 28/86 (32%)
Query: 104 EQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYS 163
M L + D A + E A +++ ++ +L+ A Y
Sbjct: 413 ATTKAMINSLQEKIDEAEQLLAKAKGMNNENAIEYAQGAIDEYKAAINDLQKAAQQDDYQ 472
Query: 164 RAADVAHGEDNYKQAAEYISRAARMC 189
+ + ++ A +Y AAR
Sbjct: 473 MFLNYLNAAKKHEMAGDYYVNAARKA 498
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A
{Encephalitozoon cuniculi} PDB: 2uy1_B
Length = 493
Score = 30.2 bits (67), Expect = 0.98
Identities = 15/119 (12%), Positives = 27/119 (22%), Gaps = 7/119 (5%)
Query: 32 EEGMEYVKSAEKHLKTSLL-KWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCY 90
E G+E L L+ + Y YS ++ + N
Sbjct: 237 ERGIEMSDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYV 296
Query: 91 ETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKS 149
+ K + N+ A + G+R + G
Sbjct: 297 LKKRGLELFRKLFIELG------NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic
protein, MEM protein; 3.50A {Aggregatibacter
actinomycetemcomitans} PDB: 4dk1_A
Length = 369
Score = 29.4 bits (66), Expect = 1.6
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 121 NLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRA-ADVAHGEDNYKQAA 179
L + + N + S + + A SL+ L + A + A A++ ++N KQA
Sbjct: 85 QLVARKTAYDVALSNYQRLSKLYGQKATSLDTL--NTAKATLNNAKAEMDVVQENIKQAE 142
Query: 180 EYISRA 185
++ A
Sbjct: 143 IEVNTA 148
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 29.1 bits (65), Expect = 1.7
Identities = 28/213 (13%), Positives = 60/213 (28%), Gaps = 36/213 (16%)
Query: 24 TMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKA--------------ATC 69
+ ++ KE+G Y AA Y +A A C
Sbjct: 1 SPSAQELKEQGNRLFVGR-------------KYPEAAACYGRAITRNPLVAVYYTNRALC 47
Query: 70 FKGAKSFQQCKEYLLKAANCYETNKSAYH-------AAKHLEQAIMMCKELNDL-TDVEN 121
+ + +Q +A + A+ + ++AI + L +
Sbjct: 48 YLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107
Query: 122 LAKQAATLFLEQGNREAASTVLEKGAKSLEELKSD-AALTLYSRAADVAHGEDNYKQAAE 180
L ++ +++ E+ EL S L R ++ + N++ +
Sbjct: 108 NFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHED 167
Query: 181 YISRAARMCVRVKEFDKAADLIRQEIGYHQESE 213
A+ + DK + + E
Sbjct: 168 DGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 28.3 bits (63), Expect = 2.1
Identities = 12/76 (15%), Positives = 18/76 (23%), Gaps = 6/76 (7%)
Query: 50 LKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMM 109
+ YD A YS A + AA C A L A +
Sbjct: 65 RQAMGQYDLAIHSYSYGAVMDIXE------PRFPFHAAECLLQXGELAEAESGLFLAQEL 118
Query: 110 CKELNDLTDVENLAKQ 125
+ ++
Sbjct: 119 IANXPEFXELSTRVSS 134
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics,
structural genomics consortium, SGC; 1.80A {Toxoplasma
gondii} PDB: 2w1z_A
Length = 377
Score = 28.8 bits (64), Expect = 2.2
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 252 PEVQTL-EKLLQAFDEEDPEGARQALNDPFIKHMDVEYSRLARDLPL 297
V+ L E L+ + +ED QA+ P + + + L+ LPL
Sbjct: 334 QPVRALLEGFLR-YPKEDRLLPLQAMETPEYEQLR---TELSAALPL 376
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma
gondii} PDB: 3q5z_A*
Length = 371
Score = 28.9 bits (64), Expect = 2.5
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 244 EWGNCCEAPE-VQTL-EKLLQAFDEEDPEGARQALNDPFIKHMDVEYS 289
+G+C P+ V+TL + L FD +A+ P + E S
Sbjct: 318 AFGSCTPLPDFVKTLIGRFLN-FDRRRRLLPLEAMETPEFLQLQNEIS 364
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Length = 1180
Score = 28.8 bits (64), Expect = 3.2
Identities = 33/147 (22%), Positives = 47/147 (31%), Gaps = 27/147 (18%)
Query: 165 AADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVA 224
A + E +Y S A++C A IR + Q E LL G A
Sbjct: 498 AMKMWLMEGESCGVGDYQSTMAQVC---------AAQIRDWLQAGQRGEALLMNGDDARP 548
Query: 225 L------VLVQLARGDTVAAEKAFKEWG----------NCCEAPEVQTLEKLLQAFDE-E 267
+ VLV+ +R + A + E E Q + LLQA E
Sbjct: 549 VRASDISVLVR-SRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPE 607
Query: 268 DPEGARQALNDPFIKHMDVEYSRLARD 294
R AL + ++ L D
Sbjct: 608 RENTLRSALATSMMGLNALDIETLNND 634
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 27.9 bits (63), Expect = 3.2
Identities = 21/121 (17%), Positives = 39/121 (32%), Gaps = 29/121 (23%)
Query: 99 AAKHLEQAIMMCKELNDLTDVENLAKQAATL------FLEQGNREAASTVLEKGAKSLEE 152
A EQ +++ KE D + ++ G E AS +K +
Sbjct: 28 AVIAHEQRLLIAKEFGDKAA------ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81
Query: 153 L--KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 210
L ++ A + YS + +Y++A +Y + I QE+
Sbjct: 82 LKDRAVEAQSCYS-LGNTYTLLQDYEKAIDYHLKHLA--------------IAQELKDRI 126
Query: 211 E 211
Sbjct: 127 G 127
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 27.8 bits (61), Expect = 5.3
Identities = 14/107 (13%), Positives = 35/107 (32%), Gaps = 10/107 (9%)
Query: 82 YLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAAST 141
+++ + K ++ + L +L ++ + + A L +G + +
Sbjct: 243 DIVRHSQHPLDEKQLAALNTEIDNIV----TLPELNNLSIIYQIKAVSALVKGKTDESYQ 298
Query: 142 VLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARM 188
+ LE S Y V + ++AA+ A +
Sbjct: 299 AINT-GIDLEM--SWLN---YVLLGKVYEMKGMNREAADAYLTAFNL 339
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 27.8 bits (61), Expect = 5.9
Identities = 3/31 (9%), Positives = 8/31 (25%)
Query: 41 AEKHLKTSLLKWKPDYDSAADDYSKAATCFK 71
EK S+ + +++
Sbjct: 282 EEKVQVVSIKDYFLEFEGDPHCLRDVQKFLV 312
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly,
membrane fusion protein, drug efflux pump, periplasmic
protein; 2.99A {Escherichia coli}
Length = 341
Score = 27.3 bits (61), Expect = 7.9
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 121 NLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRA-ADVAHGEDNYKQAA 179
+ A L L + + + A S ++L D A T + A + + K+
Sbjct: 84 QRQQAEAELKLARVTYSRQQRLAQTQAVSQQDL--DNAATEMAVKQAQIGTIDAQIKRNQ 141
Query: 180 EYISRA 185
+ A
Sbjct: 142 ASLDTA 147
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.126 0.354
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,792,523
Number of extensions: 291793
Number of successful extensions: 910
Number of sequences better than 10.0: 1
Number of HSP's gapped: 810
Number of HSP's successfully gapped: 125
Length of query: 325
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 231
Effective length of database: 4,077,219
Effective search space: 941837589
Effective search space used: 941837589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.7 bits)