RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10061
(325 letters)
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 290
Score = 73.9 bits (180), Expect = 1e-15
Identities = 48/260 (18%), Positives = 98/260 (37%), Gaps = 14/260 (5%)
Query: 33 EGMEYVKSAEKHLKTSL-------LKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLK 85
+ +E +K AEK S ++ AAD +AAT ++ K + LK
Sbjct: 3 DPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLK 62
Query: 86 AANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEK 145
AA+ + + A +A K + + + + A +F +G + +
Sbjct: 63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122
Query: 146 GAKSLEELKS--DAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIR 203
+ LE A+ Y A + + + + + + A + ++ +A+D+
Sbjct: 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYS 182
Query: 204 QEIGYHQESEHL-LAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCC----EAPEVQTLE 258
+ I + ++ + L QLA D VAA + +E + ++ E L+
Sbjct: 183 KLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLK 242
Query: 259 KLLQAFDEEDPEGARQALND 278
L+ A +E D E + +
Sbjct: 243 SLIDAVNEGDSEQLSEHCKE 262
>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 299
Score = 32.1 bits (72), Expect = 0.065
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 12/51 (23%)
Query: 257 LEKLLQAFDEEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRP 307
++ L F+ A QAL + + P P+ C PRP
Sbjct: 260 IQGLFL-FNPCARITATQALKMKYFS-----------NRPGPTPGCQLPRP 298
>d1kica_ c.70.1.1 (A:) Inosine-adenosine-guanosine preferring
nucleoside hydrolase {Trypanosoma vivax [TaxId: 5699]}
Length = 327
Score = 31.2 bits (70), Expect = 0.16
Identities = 25/178 (14%), Positives = 45/178 (25%), Gaps = 18/178 (10%)
Query: 117 TDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYK 176
VEN + N + L KS + A +A D+
Sbjct: 41 CFVENGFNVTGKIMCLMHNN--MNLPLFPIGKSA----ATAVNPFPKEWRCLAKNMDDMP 94
Query: 177 QAAEYISRAARMCVRVKEFDK-AADLIRQEIGYHQESEHLLAIGRL---AVALVLVQLA- 231
+ ++ + L+ + +E + G L A +
Sbjct: 95 ILNIPENVELWDKIKAENEKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKF 154
Query: 232 ---RGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAFDEEDPEGARQALNDPFIKHMDV 286
+ V A GN T E + DP A+ P ++ +
Sbjct: 155 TSKVEECVIMGGAVDVRGNVFLPSTDGTAEWNIYW----DPASAKTVFGCPGLRRIMF 208
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III
{Escherichia coli [TaxId: 562]}
Length = 366
Score = 31.0 bits (68), Expect = 0.16
Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 2/102 (1%)
Query: 44 HLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHL 103
++ + D +AA+ A F Q + + A A L
Sbjct: 217 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI--ARAQILLGEFEPAEIVL 274
Query: 104 EQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEK 145
E+ + L ++D+ L+ + G + A VL
Sbjct: 275 EELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 316
Score = 28.3 bits (61), Expect = 1.2
Identities = 14/105 (13%), Positives = 36/105 (34%)
Query: 111 KELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAH 170
K++ + T A + + GN + A + + + L + + S +V H
Sbjct: 3 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62
Query: 171 GEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL 215
+ ++ + + +M + + A + Q+ L
Sbjct: 63 CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL 107
>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 350
Score = 30.9 bits (69), Expect = 0.18
Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Query: 257 LEKLLQAFDEEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPASIRQNAAP 316
+LL+ + +A F + +L P+ T + S A
Sbjct: 283 CSRLLE-YTPTARLTPLEACAHSFFDELRDPNVKLPNGRDTPALFNFTTQELSSNPPLAT 341
Query: 317 SYVSPH 322
+ PH
Sbjct: 342 ILIPPH 347
>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human
(Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 26.3 bits (57), Expect = 4.9
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 257 LEKLLQAFDEEDPE---GARQALNDPFIKHMDVEYSRLARDLPLP 298
+ +LL +DP+ + +L P+IK D + + L+ P
Sbjct: 251 IRRLLV----KDPKKRMTIQDSLQHPWIKPKDTQQA-LSSAWSHP 290
>d1e7ua4 d.144.1.4 (A:726-1094) Phoshoinositide 3-kinase (PI3K),
catalytic domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 369
Score = 26.2 bits (57), Expect = 6.8
Identities = 12/81 (14%), Positives = 30/81 (37%), Gaps = 4/81 (4%)
Query: 71 KGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLF 130
K + FQ+ ++ +KA + + +M+ + LT E++ L
Sbjct: 276 KTSLHFQKFQDVCVKAYLALRHHTNLLII--LFS--MMLMTGMPQLTSKEDIEYIRDALT 331
Query: 131 LEQGNREAASTVLEKGAKSLE 151
+ + +A L++ +
Sbjct: 332 VGKSEEDAKKYFLDQIEVCRD 352
>d1y7ea1 b.49.3.1 (A:101-233) Probable aminopeptidase ApeA {Borrelia
burgdorferi [TaxId: 139]}
Length = 133
Score = 25.2 bits (55), Expect = 7.0
Identities = 9/46 (19%), Positives = 20/46 (43%)
Query: 100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEK 145
HL++ I K+ +++ + ENL +L +E + +
Sbjct: 68 LPHLDRKIQRNKKSDEIVEGENLKILIGSLPIETKEKNKVKLATLQ 113
>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 305
Score = 25.6 bits (55), Expect = 8.8
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 257 LEKLLQAFDEEDPEGARQALNDPFIKHMD 285
L K L F+ A AL+ P+ + ++
Sbjct: 273 LLKCLT-FNPAKRISAYSALSHPYFQDLE 300
>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain
{Caenorhabditis elegans, pjk4 [TaxId: 6239]}
Length = 350
Score = 25.8 bits (56), Expect = 9.0
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 10/62 (16%)
Query: 257 LEKLLQAFDEEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPASIRQNAAP 316
+ KLL D QAL P++ + RD +PS R IR +
Sbjct: 260 IRKLLL-ADPNTRMTIHQALEHPWLT----PGNAPGRDSQIPS-----SRYTKIRDSIKT 309
Query: 317 SY 318
Y
Sbjct: 310 KY 311
>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 362
Score = 25.8 bits (55), Expect = 9.4
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 257 LEKLLQAFDEEDPEGARQALNDPFIK 282
L +LQ D A +N P++K
Sbjct: 308 LSPMLQ-LDPRKRADAGGLVNHPWLK 332
>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein
kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 322
Score = 25.4 bits (55), Expect = 9.7
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 7/34 (20%)
Query: 257 LEKLLQAFDEEDPE---GARQALNDPFIKHMDVE 287
+ K L ++P +Q + FIK D E
Sbjct: 278 VNKCLI----KNPAERADLKQLMVHAFIKRSDAE 307
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.126 0.354
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,122,612
Number of extensions: 51047
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 26
Length of query: 325
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 239
Effective length of database: 1,226,816
Effective search space: 293209024
Effective search space used: 293209024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.7 bits)