BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10062
(405 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2UU7|A Chain A, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|B Chain B, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|C Chain C, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|D Chain D, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|E Chain E, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|F Chain F, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|G Chain G, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|H Chain H, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|I Chain I, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|J Chain J, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|K Chain K, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|L Chain L, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|M Chain M, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|N Chain N, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|O Chain O, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
Length = 381
Score = 258 bits (660), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 171/413 (41%), Positives = 216/413 (52%), Gaps = 103/413 (24%)
Query: 46 LGNSPNAAMNKTVLDKYLALPVPADKIQATYIWIDGTGEGIRAKDRTLTGVVKNVSGRPD 105
+ S ++ +NK + Y++LP +K+QA YIWIDGTGEG+R K RTL K V P+
Sbjct: 1 MATSASSHLNKGIKQVYMSLPQ-GEKVQAMYIWIDGTGEGLRCKTRTLDSEPKGVEELPE 59
Query: 106 QVY---------------YLI---MSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATY 147
+ YL+ M PN + V KY P +
Sbjct: 60 WNFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVF-KYNRKPAETN------ 112
Query: 148 IWIDGTGEGIRAKCSQLPLL--RKGPYYCGVGANKVYARDIVEAHYRACLYAGIEISGTN 205
+R C ++ + + P++ G + Y + H G
Sbjct: 113 ---------LRHTCKRIMDMVSNQHPWF---GMEQEYTLMGTDGHPFGWPSNGF----PG 156
Query: 206 AEGPYYCGVGANKVYARDIVEAHYRACLYAGIEISGTNAEVMPSQWEFQ-------DIAK 258
+GPYYCGVGA+K Y RDIVEAHYRACLYAGI+I+GTNAEVMP+QWEFQ D+
Sbjct: 157 PQGPYYCGVGADKAYGRDIVEAHYRACLYAGIKIAGTNAEVMPAQWEFQIGPCEGIDMGD 216
Query: 259 ------------CQDL---------PI---WNYDGSSTYQSE--MREDNGIIEIEKAIDK 292
C+D PI WN G T S MRE+NG+ IE++I+K
Sbjct: 217 HLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEESIEK 276
Query: 293 LSKQHLRHIQAYDPKQGKDNERRLTGKHETSSIHDFSAGVANRGASIRIPRDCAEQKKGY 352
LSK+H HI+AYDPK G DN RRLTG HETS+I+DFSAGVANRGASIRIPR ++KKGY
Sbjct: 277 LSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGY 336
Query: 353 LEDRRVANRGASIRIPRDCAEQKKGYLEDRRPSSNCDPYSVTEALIRTCVLNE 405
EDRRPS+NCDP+SVTEALIRTC+LNE
Sbjct: 337 --------------------------FEDRRPSANCDPFSVTEALIRTCLLNE 363
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 33/41 (80%)
Query: 1 LPIWNYDGSSTYQSEGSNSDTFLHPVAIFKDPFRLGNNILM 41
LP WN+DGSST+QSEGSNSD +L P A+F+DPFR N L+
Sbjct: 57 LPEWNFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLV 97
>pdb|2OJW|A Chain A, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|B Chain B, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|C Chain C, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|D Chain D, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|E Chain E, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2QC8|A Chain A, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|B Chain B, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|C Chain C, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|D Chain D, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|E Chain E, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|F Chain F, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|G Chain G, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|H Chain H, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|I Chain I, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|J Chain J, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
Length = 384
Score = 252 bits (644), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 168/408 (41%), Positives = 214/408 (52%), Gaps = 103/408 (25%)
Query: 51 NAAMNKTVLDKYLALPVPADKIQATYIWIDGTGEGIRAKDRTLTGVVKNVSGRPDQVY-- 108
++ +NK + Y++LP +K+QA YIWIDGTGEG+R K RTL K V P+ +
Sbjct: 25 SSHLNKGIKQVYMSLP-QGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEWNFDG 83
Query: 109 -------------YLI---MSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATYIWIDG 152
YL+ M PN + V KY P +
Sbjct: 84 SSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVF-KYNRRPAETN----------- 131
Query: 153 TGEGIRAKCSQLPLL--RKGPYYCGVGANKVYARDIVEAHYRACLYAGIEISGTNAEGPY 210
+R C ++ + + P++ G + Y + H G +GPY
Sbjct: 132 ----LRHTCKRIMDMVSNQHPWF---GMEQEYTLMGTDGHPFGWPSNGF----PGPQGPY 180
Query: 211 YCGVGANKVYARDIVEAHYRACLYAGIEISGTNAEVMPSQWEFQD-------------IA 257
YCGVGA++ Y RDIVEAHYRACLYAG++I+GTNAEVMP+QWEFQ +A
Sbjct: 181 YCGVGADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVA 240
Query: 258 K------CQDL---------PI---WNYDGSSTYQSE--MREDNGIIEIEKAIDKLSKQH 297
+ C+D PI WN G T S MRE+NG+ IE+AI+KLSK+H
Sbjct: 241 RFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRH 300
Query: 298 LRHIQAYDPKQGKDNERRLTGKHETSSIHDFSAGVANRGASIRIPRDCAEQKKGYLEDRR 357
HI+AYDPK G DN RRLTG HETS+I+DFSAGVANR ASIRIPR ++KKGY
Sbjct: 301 QYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGY----- 355
Query: 358 VANRGASIRIPRDCAEQKKGYLEDRRPSSNCDPYSVTEALIRTCVLNE 405
EDRRPS+NCDP+SVTEALIRTC+LNE
Sbjct: 356 ---------------------FEDRRPSANCDPFSVTEALIRTCLLNE 382
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 32/41 (78%)
Query: 1 LPIWNYDGSSTYQSEGSNSDTFLHPVAIFKDPFRLGNNILM 41
LP WN+DGSST QSEGSNSD +L P A+F+DPFR N L+
Sbjct: 76 LPEWNFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLV 116
>pdb|3FKY|A Chain A, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|B Chain B, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|C Chain C, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|D Chain D, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|E Chain E, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|F Chain F, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|G Chain G, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|H Chain H, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|I Chain I, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|J Chain J, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|K Chain K, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|L Chain L, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|M Chain M, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|N Chain N, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|O Chain O, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|P Chain P, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|Q Chain Q, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|R Chain R, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|S Chain S, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|T Chain T, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
Length = 370
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/228 (45%), Positives = 127/228 (55%), Gaps = 65/228 (28%)
Query: 207 EGPYYCGVGANKVYARDIVEAHYRACLYAGIEISGTNAEVMPSQWEFQDIAKCQDLPI-- 264
+GPYYCGVGA KVYARD++EAHYRACLYAG+EISG NAEVMPSQWEFQ + C + +
Sbjct: 155 QGPYYCGVGAGKVYARDMIEAHYRACLYAGLEISGINAEVMPSQWEFQ-VGPCTGIDMGD 213
Query: 265 ------------------------------WNYDG--SSTYQSEMREDNGIIEIEKAIDK 292
WN G ++ EMR+ G IE+AI+K
Sbjct: 214 QLWMARYFLHRVAEEFGIKISFHPKPLKGDWNGAGCHANVSTKEMRQPGGTKYIEQAIEK 273
Query: 293 LSKQHLRHIQAYDPKQGKDNERRLTGKHETSSIHDFSAGVANRGASIRIPRDCAEQKKGY 352
LSK+H HI+ Y G DN+ RLTG+HET+S+ FS+GVANRG+SIRIPR A++ GY
Sbjct: 274 LSKRHAEHIKLY----GSDNDMRLTGRHETASMTAFSSGVANRGSSIRIPRSVAKEGYGY 329
Query: 353 LEDRRVANRGASIRIPRDCAEQKKGYLEDRRPSSNCDPYSVTEALIRT 400
EDRRP+SN DPY VT + T
Sbjct: 330 --------------------------FEDRRPASNIDPYLVTGIMCET 351
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 1 LPIWNYDGSSTYQSEGSNSDTFLHPVAIFKDPFRLGNNILMSHGVLGN--SPNAAMNKTV 58
LP WN+DGSST Q+ G +SD +L PVA + DPFR G+NI++ N +PN ++
Sbjct: 54 LPEWNFDGSSTNQAPGHDSDIYLKPVAYYPDPFRRGDNIVVLAACYNNDGTPNKFNHRHE 113
Query: 59 LDKYLA 64
K A
Sbjct: 114 AAKLFA 119
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 52 AAMNKT-VLDKYLALPVPADKIQATYIWIDGTGEGIRAKDRTLTGVVKNVSGRPD 105
A++ KT +L KYL L +I A Y+WIDGTG +R+K RTL + ++ P+
Sbjct: 4 ASIEKTQILQKYLELDQRG-RIIAEYVWIDGTGN-LRSKGRTLKKRITSIDQLPE 56
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 123 AAMNKT-VLDKYLALPVPADKIQATYIWIDGTGEGIRAKCSQL 164
A++ KT +L KYL L +I A Y+WIDGTG +R+K L
Sbjct: 4 ASIEKTQILQKYLELDQRG-RIIAEYVWIDGTGN-LRSKGRTL 44
>pdb|2D3A|A Chain A, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|B Chain B, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|C Chain C, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|D Chain D, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|E Chain E, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|F Chain F, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|G Chain G, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|H Chain H, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|I Chain I, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|J Chain J, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3B|A Chain A, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|B Chain B, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|C Chain C, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|D Chain D, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|E Chain E, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|F Chain F, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|G Chain G, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|H Chain H, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|I Chain I, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|J Chain J, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3C|A Chain A, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|B Chain B, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|C Chain C, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|D Chain D, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|E Chain E, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|F Chain F, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|G Chain G, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|H Chain H, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|I Chain I, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|J Chain J, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
Length = 356
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 135/393 (34%), Positives = 180/393 (45%), Gaps = 101/393 (25%)
Query: 63 LALPVPADKIQATYIWIDGTGEGIRAKDRTLTGVVKNVSGRPDQVY-------------- 108
L L +KI A YIWI G+G +R+K RTL G V + S P Y
Sbjct: 10 LNLSDTTEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSE 69
Query: 109 YLIMSHGVLGNSPNAAMNKTVL-DKYLAL--PVPADKIQATYIWIDGTGEGIRAKCSQLP 165
++ + + N V+ D Y P+P +K + AK P
Sbjct: 70 VILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSA------------AKIFSSP 117
Query: 166 -LLRKGPYYCGVGANKVYARDIVEAHYRACLYAGIEISG-TNAEGPYYCGVGANKVYARD 223
+ + P+Y G + Y + ++ G I G +GPYYCG+GA K + RD
Sbjct: 118 EVAAEEPWY---GIEQEYTLLQKDTNWPL----GWPIGGFPGPQGPYYCGIGAEKSFGRD 170
Query: 224 IVEAHYRACLYAGIEISGTNAEVMPSQWEFQD---------------------------- 255
IV+AHY+ACLYAGI ISG N EVMP QWEFQ
Sbjct: 171 IVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGV 230
Query: 256 IAKCQDLPI---WNYDGSST-YQSE-MREDNGIIEIEKAIDKLSKQHLRHIQAYDPKQGK 310
+ PI WN G+ T Y +E MR++ G I+ AI+KL +H HI AY G+
Sbjct: 231 VVTFDPKPIPGDWNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAY----GE 286
Query: 311 DNERRLTGKHETSSIHDFSAGVANRGASIRIPRDCAEQKKGYLEDRRVANRGASIRIPRD 370
NERRLTG+HET+ I+ FS GVANRGAS+R+ R+ + KGY
Sbjct: 287 GNERRLTGRHETADINTFSWGVANRGASVRVGRETEQNGKGY------------------ 328
Query: 371 CAEQKKGYLEDRRPSSNCDPYSVTEALIRTCVL 403
EDRRP+SN DPY VT + T ++
Sbjct: 329 --------FEDRRPASNMDPYVVTSMIAETTIV 353
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/41 (68%), Positives = 33/41 (80%)
Query: 1 LPIWNYDGSSTYQSEGSNSDTFLHPVAIFKDPFRLGNNILM 41
LP WNYDGSST Q+ G +S+ L+P AIFKDPFR GNNIL+
Sbjct: 50 LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILV 90
>pdb|2Y3A|A Chain A, Crystal Structure Of P110beta In Complex With Icsh2 Of
P85beta And The Drug Gdc-0941
Length = 1092
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 12/60 (20%)
Query: 214 VGANKVYARDIVEAHYRACLYAGI----------EISGTNAEVMPSQWEFQDIAKCQDLP 263
V NK+ + V+ H RA L+ G EISG N + Q EF DI C DLP
Sbjct: 360 VKGNKLNTEETVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEF-DINIC-DLP 417
>pdb|3NG0|A Chain A, Crystal Structure Of Glutamine Synthetase From
Synechocystis Sp. Pcc 6803
Length = 473
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 359 ANRGASIRIPRDCAEQKKGYLEDRRPSSNCDPYSVTEALI 398
NR AS+RIP K LE R P + +PY A++
Sbjct: 340 GNRSASVRIPLSGGNPKAKRLEFRCPDATSNPYLAFAAML 379
>pdb|2BVC|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2BVC|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2BVC|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2BVC|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2BVC|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2BVC|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2WGS|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|I Chain I, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|K Chain K, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WHI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|2WHI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|2WHI|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|2WHI|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|2WHI|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|2WHI|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXV|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|3ZXV|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|3ZXV|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|3ZXV|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|3ZXV|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|3ZXV|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|4ACF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate.
pdb|4ACF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate.
pdb|4ACF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate.
pdb|4ACF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate.
pdb|4ACF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate.
pdb|4ACF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate
Length = 486
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 360 NRGASIRIPRDCAEQKKGYLEDRRPSSNCDPYSVTEALI 398
NR A +RIP + K LE R P S+ +PY A++
Sbjct: 354 NRSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAML 392
>pdb|1HTO|A Chain A, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|B Chain B, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|C Chain C, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|D Chain D, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|E Chain E, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|F Chain F, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|G Chain G, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|H Chain H, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|I Chain I, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|J Chain J, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|K Chain K, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|L Chain L, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|M Chain M, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|N Chain N, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|O Chain O, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|P Chain P, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|Q Chain Q, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|R Chain R, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|S Chain S, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|T Chain T, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|U Chain U, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|V Chain V, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|W Chain W, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|X Chain X, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|A Chain A, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|B Chain B, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|C Chain C, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|D Chain D, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|E Chain E, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|F Chain F, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|G Chain G, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|H Chain H, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|I Chain I, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|J Chain J, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|K Chain K, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|L Chain L, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|M Chain M, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|N Chain N, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|O Chain O, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|P Chain P, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|Q Chain Q, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|R Chain R, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|S Chain S, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|T Chain T, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|U Chain U, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|V Chain V, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|W Chain W, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|X Chain X, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
Length = 477
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 360 NRGASIRIPRDCAEQKKGYLEDRRPSSNCDPYSVTEALI 398
NR A +RIP + K LE R P S+ +PY A++
Sbjct: 345 NRSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAML 383
>pdb|2VL7|A Chain A, Structure Of S. Tokodaii Xpd4
Length = 540
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 315 RLTGKHETSSIHDFSAGVANR--GASIRIPRDCAEQKKGYLEDRR 357
+LTGK E S IHD +A V + G + R P D K YL D R
Sbjct: 480 KLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYV---KIYLCDSR 521
>pdb|3FQG|A Chain A, Crystal Structure Of The S. Pombe Rai1
Length = 360
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 23 LHPVAIFKDPFRLGNNILMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATYIWIDGT 82
HP DP + ++LM+ G+ NS + + ++ K + P+ TY+ +D T
Sbjct: 62 FHPPKSDPDPISIVKDVLMTKGIQMNS-SFLTWRGLITKIMCAPLDPRNHWETYLVMDPT 120
Query: 83 GEGIRAKDRT 92
I ++RT
Sbjct: 121 SGIIMMEERT 130
>pdb|1BCG|A Chain A, Scorpion Toxin Bjxtr-It
Length = 77
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 200 EISGTNAEGPYYCGVGANKVYARDIVEAHYRACLYAGIE 238
E SG NA P+YC KVY + + AC G+E
Sbjct: 16 ECSGVNAIAPHYCNSECTKVYYAESGYCCWGACYCFGLE 54
>pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5
(BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP
pdb|3IUC|C Chain C, Crystal Structure Of The Human 70kda Heat Shock Protein 5
(BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP
Length = 408
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 13/121 (10%)
Query: 276 EMREDNGII-----EIEKAIDKLSKQHLRHIQAYDPKQGKDNERRLT-GKHETSSIHDFS 329
++R+DN + E+EKA LS QH I+ +G+D LT K E ++ F
Sbjct: 275 DVRKDNRAVQKLRREVEKAKRALSSQHQARIEIESFYEGEDFSETLTRAKFEELNMDLFR 334
Query: 330 AGVANRGASIRIPRDCAEQKKGYLEDRRVANRGASIRIPRDCAEQKKGYLEDRRPSSNCD 389
+ + ++ + ++ KK +++ + G S RIP+ + K + + PS +
Sbjct: 335 STM----KPVQKVLEDSDLKKSDIDE--IVLVGGSTRIPK-IQQLVKEFFNGKEPSRGIN 387
Query: 390 P 390
P
Sbjct: 388 P 388
>pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Complex With Atp
pdb|3LDL|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Complex With Atp
pdb|3LDN|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Apo Form
pdb|3LDN|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Apo Form
pdb|3LDO|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 / Bip) Atpase Domain In Complex With Amppnp
pdb|3LDO|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 / Bip) Atpase Domain In Complex With Amppnp
pdb|3LDP|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Complex With Small Molecule
Inhibitor
pdb|3LDP|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Complex With Small Molecule
Inhibitor
Length = 384
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 13/121 (10%)
Query: 276 EMREDNGII-----EIEKAIDKLSKQHLRHIQAYDPKQGKDNERRLT-GKHETSSIHDFS 329
++R+DN + E+EKA LS QH I+ +G+D LT K E ++ F
Sbjct: 254 DVRKDNRAVQKLRREVEKAKRALSSQHQARIEIESFYEGEDFSETLTRAKFEELNMDLFR 313
Query: 330 AGVANRGASIRIPRDCAEQKKGYLEDRRVANRGASIRIPRDCAEQKKGYLEDRRPSSNCD 389
+ + ++ + ++ KK +++ + G S RIP+ + K + + PS +
Sbjct: 314 STM----KPVQKVLEDSDLKKSDIDE--IVLVGGSTRIPK-IQQLVKEFFNGKEPSRGIN 366
Query: 390 P 390
P
Sbjct: 367 P 367
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 28.5 bits (62), Expect = 7.8, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 171 PYYCGVGANKVYARDIVEAHYRACLYAGIEISGTNAEGPYYCGVGANKVYARDIVEAHYR 230
PY CGV K + + H + ++ GI+ PY C + A + RD H
Sbjct: 37 PYGCGVCGKKFKMKHHLVGHMK--IHTGIK--------PYECNICAKRFMWRDSFHRHVT 86
Query: 231 AC 232
+C
Sbjct: 87 SC 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,307,782
Number of Sequences: 62578
Number of extensions: 596786
Number of successful extensions: 1402
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1349
Number of HSP's gapped (non-prelim): 52
length of query: 405
length of database: 14,973,337
effective HSP length: 101
effective length of query: 304
effective length of database: 8,652,959
effective search space: 2630499536
effective search space used: 2630499536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)