Query psy10062
Match_columns 405
No_of_seqs 211 out of 865
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 16:54:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0683|consensus 100.0 4.7E-86 1E-90 654.7 14.1 307 46-405 4-370 (380)
2 PLN03036 glutamine synthetase; 100.0 1.5E-72 3.2E-77 576.4 21.0 289 61-405 69-415 (432)
3 PLN02284 glutamine synthetase 100.0 3.4E-61 7.4E-66 481.8 19.7 291 59-403 7-353 (354)
4 KOG0683|consensus 100.0 2.8E-44 6.1E-49 357.1 10.6 187 1-253 61-256 (380)
5 COG0174 GlnA Glutamine synthet 100.0 6E-42 1.3E-46 352.0 22.6 285 3-403 48-359 (443)
6 TIGR00653 GlnA glutamine synth 100.0 2.5E-34 5.5E-39 296.9 17.3 275 73-403 14-373 (460)
7 TIGR03105 gln_synth_III glutam 100.0 2.4E-34 5.3E-39 295.2 15.2 266 73-403 12-352 (435)
8 PRK09469 glnA glutamine synthe 100.0 4.7E-34 1E-38 295.6 15.4 273 74-403 18-381 (469)
9 PF00120 Gln-synt_C: Glutamine 100.0 9.5E-32 2.1E-36 257.4 14.3 174 180-401 64-259 (259)
10 PLN03036 glutamine synthetase; 99.9 9.7E-27 2.1E-31 239.2 14.5 185 1-251 110-303 (432)
11 PLN02284 glutamine synthetase 99.8 1.2E-19 2.6E-24 182.5 13.9 184 2-251 51-243 (354)
12 COG0174 GlnA Glutamine synthet 99.5 1.7E-14 3.6E-19 149.5 6.1 171 69-262 13-210 (443)
13 PF03951 Gln-synt_N: Glutamine 98.9 1.2E-09 2.7E-14 89.4 4.1 43 5-47 36-83 (84)
14 TIGR00653 GlnA glutamine synth 98.4 2.7E-06 5.9E-11 89.1 12.3 68 182-250 180-255 (460)
15 PF03951 Gln-synt_N: Glutamine 98.3 6.3E-07 1.4E-11 73.5 3.6 76 72-163 3-81 (84)
16 TIGR03105 gln_synth_III glutam 98.2 2.5E-05 5.4E-10 81.4 13.0 76 172-250 147-230 (435)
17 PF00120 Gln-synt_C: Glutamine 98.0 1.5E-06 3.3E-11 83.8 0.2 110 170-308 4-137 (259)
18 PRK09469 glnA glutamine synthe 98.0 5.6E-05 1.2E-09 79.6 11.7 67 183-250 189-264 (469)
19 COG3968 Uncharacterized protei 96.9 0.0057 1.2E-07 64.7 9.8 71 204-276 249-353 (724)
20 COG4456 VagC Virulence-associa 37.8 24 0.00052 29.2 2.0 12 333-344 8-19 (74)
21 PF12224 Amidoligase_2: Putati 23.0 1.5E+02 0.0032 28.1 4.9 23 375-397 223-245 (252)
22 KOG0496|consensus 20.1 2.2E+02 0.0048 32.2 6.1 84 222-308 48-163 (649)
No 1
>KOG0683|consensus
Probab=100.00 E-value=4.7e-86 Score=654.66 Aligned_cols=307 Identities=52% Similarity=0.827 Sum_probs=295.6
Q ss_pred ccCCCCcccchhhhhhhcCCCCCCCceEEEEEeeeCCCcccccccccccCcccCCCCCCCcchhhhhcCCccCCChhhhc
Q psy10062 46 LGNSPNAAMNKTVLDKYLALPVPADKIQATYIWIDGTGEGIRAKDRTLTGVVKNVSGRPDQVYYLIMSHGVLGNSPNAAM 125 (405)
Q Consensus 46 ~~~~~~~~~~~~~~~~y~~lP~~~~~~~a~yiwidg~g~~~R~k~rtl~~~~~~~~~~P~w~fd~~~~~~~~GSS~~qa~ 125 (405)
|..+.++.++++..+.|+.|++..+||||+||||||+||++|||+||+++.++.++++|.|||| ||||+|++
T Consensus 4 l~~~~~~~~~~~~~~~~~~L~~~~~kv~a~YVwidg~ge~~rsk~rt~d~~~~~~~~lp~wnyd--------gsst~QA~ 75 (380)
T KOG0683|consen 4 LAQEKRTRLSKTAILEYLYLRAKRKKVQAEYVWIDGTGENLRSKTRTLDAEPSSISELPIWNYD--------GSSTGQAP 75 (380)
T ss_pred hhcCcccccchhhhhhhccccccCceEEEEEEEecCccccchhhcccccCCccCcccCcccccc--------Cccccccc
Confidence 4457778888999999999999889999999999999999999999999999999999999999 99999999
Q ss_pred ccccccccccCCCcccccceeEEeeCC--CCCceeeecCC-----CCCCCCCCcchhhhhhhhh--hhhHHHHHHHhhhh
Q psy10062 126 NKTVLDKYLALPVPADKIQATYIWIDG--TGEGIRAKCSQ-----LPLLRKGPYYCGVGANKVY--ARDIVEAHYRACLY 196 (405)
Q Consensus 126 ~~~~SD~~L~~P~~~~~~~~~yi~~dp--~G~~~~v~c~~-----~P~~~qgryyc~~g~~kv~--~rdi~eahyrac~~ 196 (405)
+. |||++|+ |++ +|+|| .|.+++|+|++ +|.++|.|.-|...+.+.. .++ ||
T Consensus 76 g~-nSd~~l~-Pva--------~~~dPfr~g~Nilv~c~~~~~~~~P~~tn~R~~c~~~~~~~~~~~~~---------PW 136 (380)
T KOG0683|consen 76 GE-NSDVYLR-PVA--------IYPDPFRNGNNILVMCDTYDFDGKPTETNKRVACARIMPKLSTKDTE---------PW 136 (380)
T ss_pred CC-CCceEEe-ehh--------hcCCcccCCCCEEEEeeccCCCCCcccccchhhHHHHhccccccccC---------Cc
Confidence 99 9999999 999 99999 88999999998 9999999999999999886 788 99
Q ss_pred cceeee-----------------e-cCCCCCeeeecCcchHHHHHHHHHHHHHHHHcCCeEEEecCCcCCCCcccccc--
Q psy10062 197 AGIEIS-----------------G-TNAEGPYYCGVGANKVYARDIVEAHYRACLYAGIEISGTNAEVMPSQWEFQDI-- 256 (405)
Q Consensus 197 ~GIeqE-----------------G-p~~QG~yyc~vG~~~~~gRdI~eahyrace~aGI~isg~~pE~mPGQwE~q~~-- 256 (405)
||+||| | |+|||+|||+||.+..++|+|+++||++|+++||.++|+|.|+|||||||||+
T Consensus 137 fg~Eqeyt~l~~~~~~p~gwp~~GFp~Pqgpyyc~VGad~~~~rdiveahy~acLyaGl~i~G~N~EvmPgQwEfqvGp~ 216 (380)
T KOG0683|consen 137 FGMEQEYTLLDALDGHPFGWPKGGFPGPQGPYYCGVGADRVFGRDIVEAHYRACLYAGLNISGINVEVMPGQWEFQVGPC 216 (380)
T ss_pred hhhhHHHhhhccccCCcccCCccCCCCCCCCceeeccccccccchhhhhhHHHHHhhheeeccccccccCceeEEeecch
Confidence 999999 2 89999999999999999999999999999999999999999999999999999
Q ss_pred --cccc-cC-----------------------C---CCCCCcceeeec--CCCCcccHHHHHHHHHHHHHHHHHhhcccC
Q psy10062 257 --AKCQ-DL-----------------------P---IWNYDGSSTYQS--EMREDNGIIEIEKAIDKLSKQHLRHIQAYD 305 (405)
Q Consensus 257 --~~~~-~l-----------------------p---~~nG~G~H~~~S--~~r~~~g~~~i~~ai~~l~~~h~~~i~~y~ 305 (405)
|.|| || | +|||+|||+|+| .||.++|.+.|++||.+|+++|.+||.+||
T Consensus 217 ~GI~~gD~lw~aR~il~rVae~~Gviasf~pKp~~g~WngaG~Htn~ST~~mr~~~g~~~i~~a~~~ls~rh~~hi~~yd 296 (380)
T KOG0683|consen 217 EGISMGDQLWMARYILHRVAEKFGVIASFDPKPILGDWNGAGCHTNFSTKEMREAGGLKIIEEAIPKLSKRHREHIAAYD 296 (380)
T ss_pred hcccchhhHHHHHHHHHHHHHHhCeeEEecCCCCCCcccCcccccccchhHHHhccCHHHHHHHhhhcchhhhhhhhhcC
Confidence 9999 88 3 999999999999 799999999999999999999999999999
Q ss_pred CCCCCCccccccCCCCCCCccccccccCCcccEEEeCCCcchhccchhhhhhhhccCCcccccccccccCCceeEecCCC
Q psy10062 306 PKQGKDNERRLTGKHETSSIHDFSAGVANRGASIRIPRDCAEQKKGYLEDRRVANRGASIRIPRDCAEQKKGYLEDRRPS 385 (405)
Q Consensus 306 p~~~~~n~rRL~g~~et~~~~~fS~g~~nR~asiRIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~E~Rrp~ 385 (405)
|+.|++|.|||||.|||+++++|||||+||++|||||+. |+..+|||+|||||+
T Consensus 297 p~~G~dN~rrltg~hEt~~i~~Fs~GvAnr~~siri~r~--------------------------va~~~~Gy~edrrP~ 350 (380)
T KOG0683|consen 297 PKGGKDNERRLTGRHETGSIDNFSWGVANRNPSIRIPRT--------------------------VAAEGKGYFEDRRPS 350 (380)
T ss_pred ccCCccchhhhcCCCccccccccccccccCCceeeechh--------------------------hhcccccccccCCCc
Confidence 999999999999999999999999999999999999998 899999999999999
Q ss_pred CCCChHHHHHHHHHHhhcCC
Q psy10062 386 SNCDPYSVTEALIRTCVLNE 405 (405)
Q Consensus 386 ~~~nPYlv~~~ll~t~~~~~ 405 (405)
+|||||+||.+++.|+||++
T Consensus 351 sN~Dpy~Vt~~~~~t~l~~~ 370 (380)
T KOG0683|consen 351 SNCDPYAVTLMIIPTTLLEA 370 (380)
T ss_pred CCCCcceeeHHHhhHHHhcc
Confidence 99999999999999999975
No 2
>PLN03036 glutamine synthetase; Provisional
Probab=100.00 E-value=1.5e-72 Score=576.37 Aligned_cols=289 Identities=47% Similarity=0.729 Sum_probs=257.2
Q ss_pred hhcCCCCCCCceEEEEEeeeCCCcccccccccccCcccCCCCCCCcchhhhhcCCccCCChhhhcccccccccccCCCcc
Q psy10062 61 KYLALPVPADKIQATYIWIDGTGEGIRAKDRTLTGVVKNVSGRPDQVYYLIMSHGVLGNSPNAAMNKTVLDKYLALPVPA 140 (405)
Q Consensus 61 ~y~~lP~~~~~~~a~yiwidg~g~~~R~k~rtl~~~~~~~~~~P~w~fd~~~~~~~~GSS~~qa~~~~~SD~~L~~P~~~ 140 (405)
+++.+++ +++||||||||||+|++||+|+|+++..++.++++|.|+|| |||++|+.+. +||++|+ |+.
T Consensus 69 ~~~~~~~-~~~~~~~yiw~~g~~~dlrgk~r~~~~~~~~~~~~~~w~fD--------GSs~g~a~~~-~sD~~l~-PDT- 136 (432)
T PLN03036 69 NLDTTPY-TDRIIAEYIWIGGSGIDLRSKSRTISKPVEHPSELPKWNYD--------GSSTGQAPGE-DSEVILY-PQA- 136 (432)
T ss_pred hhccccc-CCeEEEEEEEeCCCCCCCCCCeEEeCccccccccCCceeee--------cCccCCCcCC-CCCEEEE-ccE-
Confidence 4444455 78999999999999999999999999999999999999999 9999998887 9999999 975
Q ss_pred cccceeEEeeCC--CCCceeeecCC-----CCCCCCCCcchhhhhhhhhhhhHHHHHHHhhhhcceeee-----------
Q psy10062 141 DKIQATYIWIDG--TGEGIRAKCSQ-----LPLLRKGPYYCGVGANKVYARDIVEAHYRACLYAGIEIS----------- 202 (405)
Q Consensus 141 ~~~~~~yi~~dp--~G~~~~v~c~~-----~P~~~qgryyc~~g~~kv~~rdi~eahyrac~~~GIeqE----------- 202 (405)
++++| .+.+++|+|+. +|.+.+.|+.|...+++.. .++++ +|+|+|+|
T Consensus 137 -------l~~~Pw~~~~~a~Vlcd~y~~dG~P~~~dpR~~L~~vl~~~~-----~~g~~--p~~G~E~EF~Lf~~~~~~~ 202 (432)
T PLN03036 137 -------IFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNKK-----VVDEV--PWFGIEQEYTLLQQNVKWP 202 (432)
T ss_pred -------EEECCcCCCCeEEEEEEEECCCCCCCCCCHHHHHHHHHHHhc-----ccCCe--EEEEeeeEEEEEEcccccc
Confidence 55555 56688999985 7899999998888876644 22344 89999999
Q ss_pred -e------cCCCCCeeeecCcchHHHHHHHHHHHHHHHHcCCeEEEecCCcCCCCcccccc----cccc-cC--------
Q psy10062 203 -G------TNAEGPYYCGVGANKVYARDIVEAHYRACLYAGIEISGTNAEVMPSQWEFQDI----AKCQ-DL-------- 262 (405)
Q Consensus 203 -G------p~~QG~yyc~vG~~~~~gRdI~eahyrace~aGI~isg~~pE~mPGQwE~q~~----~~~~-~l-------- 262 (405)
| |.+||+|||.++.+..++|+|+++|+++|+++||+|+++|+|++|||||||++ |++| ++
T Consensus 203 ~G~~~~~~p~p~g~yy~~~~~d~~~~~~i~~~i~~a~~~~GI~Ie~~~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk 282 (432)
T PLN03036 203 LGWPVGAYPGPQGPYYCGAGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILE 282 (432)
T ss_pred cCCCCCCccCCCCCcCCCchhhhhhHHHHHHHHHHHHHHCCCCeEEEEcCcCCCceEEecCCChHHHHHHHHHHHHHHHH
Confidence 1 23788899999999899999999999999999999999999999999999999 8888 65
Q ss_pred ---------------C---CCCCCcceeeecC--CCCcccHHHHHHHHHHHHHHHHHhhcccCCCCCCCccccccCCCCC
Q psy10062 263 ---------------P---IWNYDGSSTYQSE--MREDNGIIEIEKAIDKLSKQHLRHIQAYDPKQGKDNERRLTGKHET 322 (405)
Q Consensus 263 ---------------p---~~nG~G~H~~~S~--~r~~~g~~~i~~ai~~l~~~h~~~i~~y~p~~~~~n~rRL~g~~et 322 (405)
| +|||||||+|+|+ ||+++|...|+++|++|+++|.+||.+| +.||||||||+|||
T Consensus 283 ~VA~~~Gl~ATFMPKP~~gd~~GSGmHiH~Sl~d~r~~gg~~~~~~~i~gl~l~H~~~i~A~----~~NsykRL~~~~ea 358 (432)
T PLN03036 283 RITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAY----GEGNERRLTGKHET 358 (432)
T ss_pred HHHHHhCCEEEEcCCcCCCCcCCCCceeEechhhccccchHHHHHHHHhhHHHHHHHHHHhh----hcChhhccCCCccc
Confidence 5 7999999999996 4576788889999999999999999999 66999999999999
Q ss_pred CCccccccccCCcccEEEeCCCcchhccchhhhhhhhccCCcccccccccccCCceeEecCCCCCCChHHHHHHHHHHhh
Q psy10062 323 SSIHDFSAGVANRGASIRIPRDCAEQKKGYLEDRRVANRGASIRIPRDCAEQKKGYLEDRRPSSNCDPYSVTEALIRTCV 402 (405)
Q Consensus 323 ~~~~~fS~g~~nR~asiRIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~E~Rrp~~~~nPYlv~~~ll~t~~ 402 (405)
++++.||||++||+++||||+. +..+++||||+|+|++|||||||+++|++|||
T Consensus 359 ~~p~~~swG~~NR~asIRIP~~--------------------------~~~~~~~riE~R~pda~aNPYLv~aai~~t~~ 412 (432)
T PLN03036 359 ASIDTFSWGVANRGCSIRVGRD--------------------------TEKKGKGYLEDRRPASNMDPYIVTSLLAETTI 412 (432)
T ss_pred cCCccceEeccCCcceEEECCC--------------------------CCCCcccEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999987 55666899999999999999999999999999
Q ss_pred cCC
Q psy10062 403 LNE 405 (405)
Q Consensus 403 ~~~ 405 (405)
|++
T Consensus 413 ~~~ 415 (432)
T PLN03036 413 LWE 415 (432)
T ss_pred cCC
Confidence 974
No 3
>PLN02284 glutamine synthetase
Probab=100.00 E-value=3.4e-61 Score=481.84 Aligned_cols=291 Identities=47% Similarity=0.702 Sum_probs=252.6
Q ss_pred hhhhcCCCCCCCceEEEEEeeeCCCcccccccccccCcccCCCCCCCcchhhhhcCCccCCChhhhcccccccccccCCC
Q psy10062 59 LDKYLALPVPADKIQATYIWIDGTGEGIRAKDRTLTGVVKNVSGRPDQVYYLIMSHGVLGNSPNAAMNKTVLDKYLALPV 138 (405)
Q Consensus 59 ~~~y~~lP~~~~~~~a~yiwidg~g~~~R~k~rtl~~~~~~~~~~P~w~fd~~~~~~~~GSS~~qa~~~~~SD~~L~~P~ 138 (405)
+++|+-+++ .++|||||||||+++.+||+|+|+++..++.+++.|.|.|| |||++++... +||++++ |+
T Consensus 7 ~~~~~~~~~-~~~~~~~y~wi~~~~~dl~g~~~~~~~~~~~~~~~~~~~fd--------Gssi~~~~~~-~sD~~l~-PD 75 (354)
T PLN02284 7 LINLNLSDS-TDKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYD--------GSSTGQAPGE-DSEVILY-PQ 75 (354)
T ss_pred hHhhcccCc-CCeEEEEEEEEEEEecCCCCceEEecccccccccCCceeec--------CCCCCCccCC-CceEEEE-cc
Confidence 567776655 79999999999999999999999999889999999999999 9999886666 9999999 96
Q ss_pred cccccceeEEeeCCCCCceeeecCC-----CCCCCCCCcchhhhhhhhhhhhHHHHHHHhhhhcceeee------ec---
Q psy10062 139 PADKIQATYIWIDGTGEGIRAKCSQ-----LPLLRKGPYYCGVGANKVYARDIVEAHYRACLYAGIEIS------GT--- 204 (405)
Q Consensus 139 ~~~~~~~~yi~~dp~G~~~~v~c~~-----~P~~~qgryyc~~g~~kv~~rdi~eahyrac~~~GIeqE------Gp--- 204 (405)
. -++.||..+...+|+|+. +|.+.+.|+.|+..++++. +.+++ +++|+|+| ..
T Consensus 76 t------~~~~Pw~~~~~~~vlcdv~~~dG~p~~~dPR~vL~r~~~~~~-----~~g~~--~~~G~E~EF~lf~~~~~~~ 142 (354)
T PLN02284 76 A------IFKDPFRGGNNILVMCDAYTPAGEPIPTNKRAKAAKIFSHPD-----VAAEE--PWYGIEQEYTLLQKDVKWP 142 (354)
T ss_pred E------EEECCCCCCCeEEEEEEEECCCCCCCCCCHHHHHHHHHHHHH-----hcCCc--eeEEeceEEEEEecCCccc
Confidence 3 125566455578999985 7899999999998888765 23455 89999999 11
Q ss_pred ---------CCCCCeeeecCcchHHHHHHHHHHHHHHHHcCCeEEEecCCcCCCCcccccc----cccc-cC--------
Q psy10062 205 ---------NAEGPYYCGVGANKVYARDIVEAHYRACLYAGIEISGTNAEVMPSQWEFQDI----AKCQ-DL-------- 262 (405)
Q Consensus 205 ---------~~QG~yyc~vG~~~~~gRdI~eahyrace~aGI~isg~~pE~mPGQwE~q~~----~~~~-~l-------- 262 (405)
.+++.|||..+.+...+++|+++++++|+++||+++++|+|++||||||++. +++| ++
T Consensus 143 ~g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~h~E~apGQ~Ei~l~~~d~l~aAD~~~~~K~vvk 222 (354)
T PLN02284 143 LGWPVGGYPGPQGPYYCGVGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPVVGISAGDQLWVARYILE 222 (354)
T ss_pred CCCCCCCcccCCCCcccCcchhhHHHHHHHHHHHHHHHHCCCCeEEEEcCcCCCceEEEecCCcHHHHHHHHHHHHHHHH
Confidence 1567888888777789999999999999999999999999999999999999 7777 55
Q ss_pred ---------------C---CCCCCcceeeecCCC--CcccHHHHHHHHHHHHHHHHHhhcccCCCCCCCccccccCCCCC
Q psy10062 263 ---------------P---IWNYDGSSTYQSEMR--EDNGIIEIEKAIDKLSKQHLRHIQAYDPKQGKDNERRLTGKHET 322 (405)
Q Consensus 263 ---------------p---~~nG~G~H~~~S~~r--~~~g~~~i~~ai~~l~~~h~~~i~~y~p~~~~~n~rRL~g~~et 322 (405)
| +|||||||+|+|+.+ +++|...++++|.+|.++|.++|.+| +.||||||+++||+
T Consensus 223 ~vA~~~Gl~ATFMPKP~~~~~~GSGmH~H~SL~~~~~~gg~~~~~~~l~~~~l~h~~~l~a~----~~NSYkRL~p~~ea 298 (354)
T PLN02284 223 RITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMREDGGYEVIKKAIEKLGLRHKEHIAAY----GEGNERRLTGKHET 298 (354)
T ss_pred HHHHHhCCEEEEcCCCCCCCCccCcceeecChhhcccCCcHHHHHHHHHHHHHHHHHHhhhh----hcCcHhhcCCCccC
Confidence 5 699999999999763 55788888999999988999999999 45899999999999
Q ss_pred CCccccccccCCcccEEEeCCCcchhccchhhhhhhhccCCcccccccccccCCceeEecCCCCCCChHHHHHHHHHHhh
Q psy10062 323 SSIHDFSAGVANRGASIRIPRDCAEQKKGYLEDRRVANRGASIRIPRDCAEQKKGYLEDRRPSSNCDPYSVTEALIRTCV 402 (405)
Q Consensus 323 ~~~~~fS~g~~nR~asiRIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~E~Rrp~~~~nPYlv~~~ll~t~~ 402 (405)
+.+..++||++||+++||||.. ...++++|||+|+|+++|||||++++||+|||
T Consensus 299 p~~~~~~wg~~NRsa~iRIP~~--------------------------~~~~~~~riE~R~pd~~aNPYLa~aaila~~~ 352 (354)
T PLN02284 299 ADINTFSWGVANRGASIRVGRD--------------------------TEKEGKGYFEDRRPASNMDPYVVTSMIAETTI 352 (354)
T ss_pred cccccceeecCCCceeEEECCC--------------------------CCCCCCCEEEEcCCCCCCCHHHHHHHHHHHHh
Confidence 9988899999999999999976 34456789999999999999999999999999
Q ss_pred c
Q psy10062 403 L 403 (405)
Q Consensus 403 ~ 403 (405)
+
T Consensus 353 ~ 353 (354)
T PLN02284 353 L 353 (354)
T ss_pred c
Confidence 7
No 4
>KOG0683|consensus
Probab=100.00 E-value=2.8e-44 Score=357.07 Aligned_cols=187 Identities=41% Similarity=0.654 Sum_probs=172.2
Q ss_pred CCCcccCCCCcCCCCCCCcceEEEeeeeecCCCCCCCCeEEEeccccCCCCcccchhhhhhhcCCCCCCCceEEEEEeee
Q psy10062 1 LPIWNYDGSSTYQSEGSNSDTFLHPVAIFKDPFRLGNNILMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATYIWID 80 (405)
Q Consensus 1 lp~w~fDGSSt~qa~g~nSd~~L~P~ai~~DPfr~~~~ilv~c~v~~~~~~~~~~~~~~~~y~~lP~~~~~~~a~yiwid 80 (405)
||+||||||||+||+|.|||++|+|+|+|+||||.++||+|+|+++ ++.+.|.++|+
T Consensus 61 lp~wnydgsst~QA~g~nSd~~l~Pva~~~dPfr~g~Nilv~c~~~--------------~~~~~P~~tn~--------- 117 (380)
T KOG0683|consen 61 LPIWNYDGSSTGQAPGENSDVYLRPVAIYPDPFRNGNNILVMCDTY--------------DFDGKPTETNK--------- 117 (380)
T ss_pred CccccccCcccccccCCCCceEEeehhhcCCcccCCCCEEEEeecc--------------CCCCCcccccc---------
Confidence 7999999999999999999999999999999999999999999999 78999999999
Q ss_pred CCCcccccccccccCcccCCCCCCCcchhhhhcCCccCCChhhhcccccccccccCCCcccccceeEEeeCC-CCCceee
Q psy10062 81 GTGEGIRAKDRTLTGVVKNVSGRPDQVYYLIMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATYIWIDG-TGEGIRA 159 (405)
Q Consensus 81 g~g~~~R~k~rtl~~~~~~~~~~P~w~fd~~~~~~~~GSS~~qa~~~~~SD~~L~~P~~~~~~~~~yi~~dp-~G~~~~v 159 (405)
|..+.++....+ .+++.+| |+|||+|++.+. .|++++|
T Consensus 118 ------R~~c~~~~~~~~------------------------------~~~~~PW-----fg~Eqeyt~l~~~~~~p~gw 156 (380)
T KOG0683|consen 118 ------RVACARIMPKLS------------------------------TKDTEPW-----FGMEQEYTLLDALDGHPFGW 156 (380)
T ss_pred ------hhhHHHHhcccc------------------------------ccccCCc-----hhhhHHHhhhccccCCcccC
Confidence 888877653321 3356655 689999999998 9999999
Q ss_pred ecCCCCCCCCCCcchhhhhhhhhhhhHHHHHHHhhhhcceeeeecCCC---CCeeeecCc--chHHHHHHHHHHH---HH
Q psy10062 160 KCSQLPLLRKGPYYCGVGANKVYARDIVEAHYRACLYAGIEISGTNAE---GPYYCGVGA--NKVYARDIVEAHY---RA 231 (405)
Q Consensus 160 ~c~~~P~~~qgryyc~~g~~kv~~rdi~eahyrac~~~GIeqEGp~~Q---G~yyc~vG~--~~~~gRdI~eahy---ra 231 (405)
|...++.||++|||++|++++++|||||+||++|++.||++.|+|.+ |||+++||+ ++.+||++|.++| |+
T Consensus 157 -p~~GFp~Pqgpyyc~VGad~~~~rdiveahy~acLyaGl~i~G~N~EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rV 235 (380)
T KOG0683|consen 157 -PKGGFPGPQGPYYCGVGADRVFGRDIVEAHYRACLYAGLNISGINVEVMPGQWEFQVGPCEGISMGDQLWMARYILHRV 235 (380)
T ss_pred -CccCCCCCCCCceeeccccccccchhhhhhHHHHHhhheeeccccccccCceeEEeecchhcccchhhHHHHHHHHHHH
Confidence 78888999999999999999999999999999999999999998876 899999999 8999999999999 99
Q ss_pred HHHcCCeEEEecCCcCCCCccc
Q psy10062 232 CLYAGIEISGTNAEVMPSQWEF 253 (405)
Q Consensus 232 ce~aGI~isg~~pE~mPGQwE~ 253 (405)
|+++|+.+++ +|||++|+|+-
T Consensus 236 ae~~Gviasf-~pKp~~g~Wng 256 (380)
T KOG0683|consen 236 AEKFGVIASF-DPKPILGDWNG 256 (380)
T ss_pred HHHhCeeEEe-cCCCCCCcccC
Confidence 9999999998 99999999975
No 5
>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism]
Probab=100.00 E-value=6e-42 Score=351.97 Aligned_cols=285 Identities=24% Similarity=0.233 Sum_probs=208.0
Q ss_pred Ccc--cCCCCcCCCCC-CCcceEEEee--eeecCCCCCCCCeEEEeccccCCCCcccchhhhhhhcCCCCCCCceEEEEE
Q psy10062 3 IWN--YDGSSTYQSEG-SNSDTFLHPV--AIFKDPFRLGNNILMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATYI 77 (405)
Q Consensus 3 ~w~--fDGSSt~qa~g-~nSd~~L~P~--ai~~DPfr~~~~ilv~c~v~~~~~~~~~~~~~~~~y~~lP~~~~~~~a~yi 77 (405)
.|. |||||+.++.+ ..|||+|+|+ ..+.+||+.+++..|+|+++. ..+.|-+.+-
T Consensus 48 ~~g~~fdgss~~g~~~i~~sDm~l~Pd~~T~~~~Pw~~~~ta~v~cdv~~--------------~~g~p~~~dP------ 107 (443)
T COG0174 48 EGGVVFDGSSIAGFEGIGESDMVLKPDLSTLVVDPWREGPTARVLCDVYD--------------PDGTPYPRDP------ 107 (443)
T ss_pred ccCcCcCCccccccCCCCCCCEEEeeccCceeeCCCCCCCcEEEEEEEEC--------------CCCCcCCCCh------
Confidence 355 99999999999 5599999999 789999999999999999984 2344443333
Q ss_pred eeeCCCcccccccccccCcccCCCCCCCcchhhhhcCCccCCChhhhcccccccccccCCCcccccceeEEeeCCCCCce
Q psy10062 78 WIDGTGEGIRAKDRTLTGVVKNVSGRPDQVYYLIMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATYIWIDGTGEGI 157 (405)
Q Consensus 78 widg~g~~~R~k~rtl~~~~~~~~~~P~w~fd~~~~~~~~GSS~~qa~~~~~SD~~L~~P~~~~~~~~~yi~~dp~G~~~ 157 (405)
|+-.+.....-+.. -+. | .-++-|.||.+-|+.+...
T Consensus 108 ---------R~vlkr~~~~l~~~--------------------------------G~~-~-~~~g~E~EFfLfd~~~~~~ 144 (443)
T COG0174 108 ---------RSVLKRALARLKDE--------------------------------GLA-P-AVVGPELEFFLFDRDGRDP 144 (443)
T ss_pred ---------HHHHHHHHHHHHhc--------------------------------CCc-c-ceeecceeEEEeecccCCc
Confidence 44332211000000 000 1 0022344443333211100
Q ss_pred eeecCCCCCCCCCCcchhhhhhhhhhhhHHHHHHHhhhhcceeeeec---CC--CCCeeeecCcchHHHHHHHHHHH---
Q psy10062 158 RAKCSQLPLLRKGPYYCGVGANKVYARDIVEAHYRACLYAGIEISGT---NA--EGPYYCGVGANKVYARDIVEAHY--- 229 (405)
Q Consensus 158 ~v~c~~~P~~~qgryyc~~g~~kv~~rdi~eahyrac~~~GIeqEGp---~~--QG~yyc~vG~~~~~gRdI~eahy--- 229 (405)
.. ..+.+++.||+-.+.++. ++++...+.+|..+|+++|.. -+ |.++.+...+...++|+++..+|
T Consensus 145 ~~----~~~~~~~~yf~~~~~~~~--~~~~~di~~~l~~~Gi~ie~~hhEva~gQ~EI~~~~~~~l~~AD~~~~~K~vvk 218 (443)
T COG0174 145 DG----GRPADKGGYFDVAPLDEA--EDFRRDIVEALEAAGIEIEAIHHEVAPGQFEINLRFDDALKAADQIVIFKYVVK 218 (443)
T ss_pred cc----CccCCCCcccCccccccH--HHHHHHHHHHHHHCCCCcEeccccccCCceEEecCCCCHHHHHHHHHHHHHHHH
Confidence 00 346778999998888876 578888888888899999951 12 44444554457899999999999
Q ss_pred HHHHHcCCeEEEecCCcCCCCcccccccccccCCCCCCCcceeeecCCCCc--------c----cHHHHHHHHHHHHHHH
Q psy10062 230 RACLYAGIEISGTNAEVMPSQWEFQDIAKCQDLPIWNYDGSSTYQSEMRED--------N----GIIEIEKAIDKLSKQH 297 (405)
Q Consensus 230 race~aGI~isg~~pE~mPGQwE~q~~~~~~~lp~~nG~G~H~~~S~~r~~--------~----g~~~i~~ai~~l~~~h 297 (405)
++|+++|+.+|| ||||+.|+ ||||||+|+|+.+.+ + ..+..+++|+||++.+
T Consensus 219 ~vA~~hG~~aTF-MpKP~~g~---------------~GSGMH~H~Sl~~~dg~nlF~d~~~~~~lS~~~~~~igGilkha 282 (443)
T COG0174 219 EVAEKHGLTATF-MPKPFFGD---------------NGSGMHVHQSLWDKDGGNLFADEDGYAGLSETALHFIGGILKHA 282 (443)
T ss_pred HHHHHhCCeEEE-eCCCCCCC---------------CCCceeEEEEEecCCCCccccCCCCcccHHHHHHHHHHHHHHHH
Confidence 999999999998 99999999 999999999976433 1 2244689999998666
Q ss_pred HHhhcccCCCCCCCccccc-cCCCC-CCCccccccccCCcccEEEeCCCcchhccchhhhhhhhccCCcccccccccccC
Q psy10062 298 LRHIQAYDPKQGKDNERRL-TGKHE-TSSIHDFSAGVANRGASIRIPRDCAEQKKGYLEDRRVANRGASIRIPRDCAEQK 375 (405)
Q Consensus 298 ~~~i~~y~p~~~~~n~rRL-~g~~e-t~~~~~fS~g~~nR~asiRIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (405)
+..+++++|+. |||||| ++ || +|... +||++||||+||||... ...+
T Consensus 283 ~~~~ai~~Ptv--NSYkRl~vp-~e~AP~~~--~wg~~NRsa~iRIP~~~--------------------------~~~~ 331 (443)
T COG0174 283 PALTAITAPTV--NSYKRLGVP-YEWAPTYI--AWGVRNRSASVRIPASG--------------------------ANGK 331 (443)
T ss_pred HHHHhHhCCCc--chhhhcCCC-cccCcchh--cccccCcceEEEeCCCC--------------------------CCCC
Confidence 66666779955 999999 58 67 66664 56789999999999872 2455
Q ss_pred CceeEecCCCCCCChHHHHHHHHHHhhc
Q psy10062 376 KGYLEDRRPSSNCDPYSVTEALIRTCVL 403 (405)
Q Consensus 376 ~g~~E~Rrp~~~~nPYlv~~~ll~t~~~ 403 (405)
.+|||+|.|+++|||||+++|||.+++.
T Consensus 332 ~~RiE~R~pd~~aNPYLa~AaiL~Agl~ 359 (443)
T COG0174 332 ARRVEFRVPDPDANPYLAFAAILAAGLD 359 (443)
T ss_pred cceeEeeCCCCCCCHHHHHHHHHHHHHH
Confidence 7799999999999999999999999864
No 6
>TIGR00653 GlnA glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation.
Probab=100.00 E-value=2.5e-34 Score=296.92 Aligned_cols=275 Identities=21% Similarity=0.181 Sum_probs=198.5
Q ss_pred EEEEEeeeCCCcccccccccccCccc-CCCCCCCcchhhhhcCCccCCChhhhcccccccccccCCCcccccceeE-Eee
Q psy10062 73 QATYIWIDGTGEGIRAKDRTLTGVVK-NVSGRPDQVYYLIMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATY-IWI 150 (405)
Q Consensus 73 ~a~yiwidg~g~~~R~k~rtl~~~~~-~~~~~P~w~fd~~~~~~~~GSS~~qa~~~~~SD~~L~~P~~~~~~~~~y-i~~ 150 (405)
.+..+|+|=.| -+|+|.-......+ .....- .|+ ||+..+.....++|++++ |+. .|+ ..+
T Consensus 14 ~v~~~~~Dl~G-~~rgk~vp~~~~~~~~~~~G~--~~~--------~~~~~~~~~~~~~D~~l~-PD~-----~Tl~~~p 76 (460)
T TIGR00653 14 FVDLRFTDIKG-KPQHVEIPASALDKEAFEEGI--MFD--------GSSIRGFQGIEESDMLLK-PDP-----STAVIDP 76 (460)
T ss_pred EEEEEEECCCC-CEeeEEEeHHHhhHHHhcCCe--ecc--------cccccccccCCCCcEEEe-ccC-----Ccceecc
Confidence 35567778888 35666543332221 111111 355 666655444447899999 998 666 788
Q ss_pred CCCCCceeeecCC------CCCCCCCCcchhhhhhhhhhhhHHHHHHHhhhhcceeee---------ecC----------
Q psy10062 151 DGTGEGIRAKCSQ------LPLLRKGPYYCGVGANKVYARDIVEAHYRACLYAGIEIS---------GTN---------- 205 (405)
Q Consensus 151 dp~G~~~~v~c~~------~P~~~qgryyc~~g~~kv~~rdi~eahyrac~~~GIeqE---------Gp~---------- 205 (405)
|..+...+|+|+. +|.+...|..++...+++.. +.+|+ +++|+|+| ++.
T Consensus 77 w~~~~~a~v~~d~~~~~dg~p~~~~PR~~L~r~~~~l~~----~~G~~--~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~ 150 (460)
T TIGR00653 77 WRAEKTLRVICDVYEPFTGEPYERDPRSIAKRAEEYLKS----GIGDT--AYFGPEPEFFLFDSVEFGSLANGSFYEVDS 150 (460)
T ss_pred CCCCCcEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHh----CCCCc--eeEEcceEEEEEecCccCcccccceeeecc
Confidence 8555677888973 57777777777777666541 44677 88999999 111
Q ss_pred ---------------CCCC-eeeecCcchHHHHHHHHHHHHHHHHcCCeEEEecCCcCCCCcccccc----cccc-cC--
Q psy10062 206 ---------------AEGP-YYCGVGANKVYARDIVEAHYRACLYAGIEISGTNAEVMPSQWEFQDI----AKCQ-DL-- 262 (405)
Q Consensus 206 ---------------~QG~-yyc~vG~~~~~gRdI~eahyrace~aGI~isg~~pE~mPGQwE~q~~----~~~~-~l-- 262 (405)
+... .||.+.. .....+++.+..++++.+||+++..|+|.+||||||++. +++| ++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~l~~~Gi~v~~~~~E~gpGQ~Ei~l~~~~~l~aAD~~~~ 229 (460)
T TIGR00653 151 EEGRWNEESGNRGYKPRDKGGYFPVAP-TDTAVDIRREMVLYLEQLGFDVEVHHHEVATGQHEIDFKFDTLLKTADDIQT 229 (460)
T ss_pred ccccccccCCcCCCcccCCccccCCCC-cccHHHHHHHHHHHHHHcCCCceeeecCcCCCceeEecCCCCHHHHHHHHHH
Confidence 0011 1344433 224456777777799999999999999999999999999 7777 44
Q ss_pred ---------------------C--CCCCCcceeeecCCCCc-------c----cHHHHHHHHHHHHHHHHHhhccc-CCC
Q psy10062 263 ---------------------P--IWNYDGSSTYQSEMRED-------N----GIIEIEKAIDKLSKQHLRHIQAY-DPK 307 (405)
Q Consensus 263 ---------------------p--~~nG~G~H~~~S~~r~~-------~----g~~~i~~ai~~l~~~h~~~i~~y-~p~ 307 (405)
| +++|||||+|+|+.++. + .....+++|+||+ +|+.++.++ +|+
T Consensus 230 ~k~~ik~vA~~~G~~ATFmpKP~~~~~GSG~H~H~Sl~d~g~n~F~d~~~~~~lS~~~~~fiaGiL-~h~~~l~a~~~Pt 308 (460)
T TIGR00653 230 YKYVVKNVARKHGKTATFMPKPLFGDNGSGMHCHQSLWKDGENLFAGEEGYAGLSETALYYIGGIL-KHAKALAAFTNPT 308 (460)
T ss_pred HHHHHHHHHHHhCCEEEEecccCCCCCcCceeEEECccCCCeeccCCCCCCcccCHHHHHHHHHHH-HHHHHhhhHhcCC
Confidence 5 99999999999986522 1 1244589999996 888888887 995
Q ss_pred CCCCccccccCCCCCCCccccccccCCcccEEEeCCCcchhccchhhhhhhhccCCcccccccccccCCceeEecCCCCC
Q psy10062 308 QGKDNERRLTGKHETSSIHDFSAGVANRGASIRIPRDCAEQKKGYLEDRRVANRGASIRIPRDCAEQKKGYLEDRRPSSN 387 (405)
Q Consensus 308 ~~~~n~rRL~g~~et~~~~~fS~g~~nR~asiRIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~E~Rrp~~~ 387 (405)
. ||||||++.++++.. -+||..||+++||||.. . ..+.+|||+|.|+++
T Consensus 309 v--NSYkRl~p~~~ap~~--~~WG~~NR~a~iRvp~~--------------------------~-~~~~~riE~R~~da~ 357 (460)
T TIGR00653 309 V--NSYKRLVPGYEAPVY--LAYSARNRSALIRIPAS--------------------------G-NPKAKRIEFRFPDPS 357 (460)
T ss_pred C--cchhhcCCCCcCcce--eecccCCCCceEEecCC--------------------------C-CCcCceEEecCCCCC
Confidence 5 999999976777665 37889999999999965 1 134669999999999
Q ss_pred CChHHHHHHHHHHhhc
Q psy10062 388 CDPYSVTEALIRTCVL 403 (405)
Q Consensus 388 ~nPYlv~~~ll~t~~~ 403 (405)
||||||+||+|++++.
T Consensus 358 aNPYLalAa~laAGl~ 373 (460)
T TIGR00653 358 ANPYLAFAAMLMAGLD 373 (460)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998863
No 7
>TIGR03105 gln_synth_III glutamine synthetase, type III. This family consists of the type III isozyme of glutamine synthetase, originally described in Rhizobium meliloti, where types I and II also occur.
Probab=100.00 E-value=2.4e-34 Score=295.17 Aligned_cols=266 Identities=17% Similarity=0.107 Sum_probs=190.8
Q ss_pred EEEEEeeeCCCcccccccccccCcccCCCCCCCcchhhhhcCCccCCChh-hhcccccccccccCCCcccccceeE-Eee
Q psy10062 73 QATYIWIDGTGEGIRAKDRTLTGVVKNVSGRPDQVYYLIMSHGVLGNSPN-AAMNKTVLDKYLALPVPADKIQATY-IWI 150 (405)
Q Consensus 73 ~a~yiwidg~g~~~R~k~rtl~~~~~~~~~~P~w~fd~~~~~~~~GSS~~-qa~~~~~SD~~L~~P~~~~~~~~~y-i~~ 150 (405)
.+...|+|=+|. +|+|.-......+...... .|+ |++.. ......++|.+|. |+. .|+ ..+
T Consensus 12 ~v~~~~~D~~G~-~r~k~vp~~~~~~~~~~G~--~~~--------~~~~~~~~~~~~~~D~~l~-PD~-----~Tl~~~p 74 (435)
T TIGR03105 12 YFLASFVDLHGV-QKAKLVPAEAIDHMATGGA--GFA--------GFAAWGLGQSPADPDLMAI-PDL-----DSLTQLP 74 (435)
T ss_pred EEEEEEECCCCC-eeEEEEeHHHHHHHHcCCC--ccc--------chhhhccCCCCCCCCEEEE-ecc-----ccceeCC
Confidence 456678888883 5776533222222111111 223 33332 1112226899998 998 666 777
Q ss_pred CCCCCceeeecCC----CCCCCCCCcchhhhhhhhhhhhHHHHHHHhhhhcceeeee------cC---------C--CCC
Q psy10062 151 DGTGEGIRAKCSQ----LPLLRKGPYYCGVGANKVYARDIVEAHYRACLYAGIEISG------TN---------A--EGP 209 (405)
Q Consensus 151 dp~G~~~~v~c~~----~P~~~qgryyc~~g~~kv~~rdi~eahyrac~~~GIeqEG------p~---------~--QG~ 209 (405)
|..+ ..+|+|+. .|.+...|..++...++.. +.+|+ +++|+|+|= .. + +.+
T Consensus 75 w~~~-~a~v~~d~~~~G~p~~~~PR~vL~r~~~~~~-----~~G~~--~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~ 146 (435)
T TIGR03105 75 WQPG-VAWVAADLHVNGKPYPQAPRVVLKRQLAEAA-----ELGLT--LNTGVECEFFLLRRDEDGSLSIADRADTLAKP 146 (435)
T ss_pred CCCC-eEEEEEEEeeCCCcCCCCHHHHHHHHHHHHH-----hcCCc--eeEEeceEEEEEecCCCCCcccCCCCCCCCcc
Confidence 7543 66888974 6777777777766666543 66888 999999991 11 0 122
Q ss_pred eeeecCcchHHHHHHHHHHHHHHHHcCCeEEEecCCcCCCCcccccc----cccc-cC----------------------
Q psy10062 210 YYCGVGANKVYARDIVEAHYRACLYAGIEISGTNAEVMPSQWEFQDI----AKCQ-DL---------------------- 262 (405)
Q Consensus 210 yyc~vG~~~~~gRdI~eahyrace~aGI~isg~~pE~mPGQwE~q~~----~~~~-~l---------------------- 262 (405)
+ |++.. ..-..+++++++++|+.+||+++..|+|.+||||||++. ++++ ++
T Consensus 147 ~-~~~~~-~~~~~~~~~~i~~~l~~~gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~vk~vA~~~Gl~atFmp 224 (435)
T TIGR03105 147 C-YDQRG-LMRRYDVLTEISDAMNALGWDPYQNDHEDANGQFEMNFTYADALTTADRHAFFRYMVKEIAEKHGMRATFMP 224 (435)
T ss_pred C-CCCcc-hhhhhHHHHHHHHHHHHCCCCeEEeecCcCCCceEEecCcchHHHHHHHHHHHHHHHHHHHHHhCCEEEecC
Confidence 2 34433 234678999999999999999999999999999999999 6666 44
Q ss_pred -C--CCCCCcceeeecCCCCcc--------------cHHHHHHHHHHHHHHHHHhhccc-CCCCCCCccccccCC-----
Q psy10062 263 -P--IWNYDGSSTYQSEMREDN--------------GIIEIEKAIDKLSKQHLRHIQAY-DPKQGKDNERRLTGK----- 319 (405)
Q Consensus 263 -p--~~nG~G~H~~~S~~r~~~--------------g~~~i~~ai~~l~~~h~~~i~~y-~p~~~~~n~rRL~g~----- 319 (405)
| +|+|||||+|+|+.+.++ -.+..+++|+||+ +|+.++.++ +|+. ||||||++.
T Consensus 225 KP~~~~~GsG~H~H~Sl~d~~g~n~f~d~~~~~~~~lS~~~~~fiaGlL-~h~~~l~a~~~Ptv--NSYkRl~p~~~~~~ 301 (435)
T TIGR03105 225 KPFADLTGNGCHFHLSLWDEDGRNLFADDSDPNGLGLSKLAYHFIGGIL-HHAPALCAVLAPTV--NSYKRLNAPRTTSG 301 (435)
T ss_pred ccCCCCCccceEEEEeeecCCCcccccCCCCCccccccHHHHHHHHHHH-HHHHHHHHHHCCCC--ccccccCCCcCCcC
Confidence 5 999999999999864221 1234488999995 888888877 9966 999999963
Q ss_pred --CCCCCccccccccCCcccEEEeCCCcchhccchhhhhhhhccCCcccccccccccCCceeEecCCCCCCChHHHHHHH
Q psy10062 320 --HETSSIHDFSAGVANRGASIRIPRDCAEQKKGYLEDRRVANRGASIRIPRDCAEQKKGYLEDRRPSSNCDPYSVTEAL 397 (405)
Q Consensus 320 --~et~~~~~fS~g~~nR~asiRIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~E~Rrp~~~~nPYlv~~~l 397 (405)
+.+..+ +||..||+++||||.. +|||+|.|+++|||||+++||
T Consensus 302 ~~~AP~~~---~WG~~NR~a~iRv~~~--------------------------------~riE~R~~da~aNPYL~lAai 346 (435)
T TIGR03105 302 ATWAPNFI---SYGGNNRTHMVRIPDP--------------------------------GRFELRLADGAANPYLAQAAI 346 (435)
T ss_pred cccCCcee---eccCCCCceeEeccCC--------------------------------CeeEecCCCCCCCHHHHHHHH
Confidence 334444 8999999999999943 399999999999999999999
Q ss_pred HHHhhc
Q psy10062 398 IRTCVL 403 (405)
Q Consensus 398 l~t~~~ 403 (405)
|++++.
T Consensus 347 laAgl~ 352 (435)
T TIGR03105 347 LAAGLD 352 (435)
T ss_pred HHHHHH
Confidence 998763
No 8
>PRK09469 glnA glutamine synthetase; Provisional
Probab=100.00 E-value=4.7e-34 Score=295.61 Aligned_cols=273 Identities=20% Similarity=0.160 Sum_probs=194.9
Q ss_pred EEEEeeeCCCcccccccccccCccc-CCCCCCCcchhhhhcCCccCCChhhhcccccccccccCCCcccccceeE-EeeC
Q psy10062 74 ATYIWIDGTGEGIRAKDRTLTGVVK-NVSGRPDQVYYLIMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATY-IWID 151 (405)
Q Consensus 74 a~yiwidg~g~~~R~k~rtl~~~~~-~~~~~P~w~fd~~~~~~~~GSS~~qa~~~~~SD~~L~~P~~~~~~~~~y-i~~d 151 (405)
+.-.|.|=.| -+|.|+-......+ ..++. -.|+ ||+.........+|++++ |+. .|+ +.||
T Consensus 18 v~~~~~Dl~G-~~rgk~ip~~~~~~~~~~~G--~~f~--------~~~~~g~~~~~~~D~~l~-PD~-----~Tl~~~Pw 80 (469)
T PRK09469 18 VDLRFTDTKG-KEQHVTIPAHQVNADFFEEG--KMFD--------GSSIGGWKGINESDMVLM-PDA-----STAVLDPF 80 (469)
T ss_pred EEEEEECCCC-CEeEEEEEHHHhhHHHhcCC--ceec--------cccccccCcCCCCCEEEE-EcC-----CccEECCc
Confidence 4445556666 25777654433322 12221 1455 766655544447999999 998 777 7888
Q ss_pred CCCCceeeecCC------CCCCCCCCcchhhhhhhhhhhhHHHHHH--Hhhhhcceeeee------c---CCCC------
Q psy10062 152 GTGEGIRAKCSQ------LPLLRKGPYYCGVGANKVYARDIVEAHY--RACLYAGIEISG------T---NAEG------ 208 (405)
Q Consensus 152 p~G~~~~v~c~~------~P~~~qgryyc~~g~~kv~~rdi~eahy--rac~~~GIeqEG------p---~~QG------ 208 (405)
......+|+|+. .|.+...|..++...+++. +.+| + +.+|+|.|= . .+++
T Consensus 81 ~~~~~a~v~~d~~~~~~g~p~~~~PR~iLkr~~~~l~-----~~G~~~~--~~~g~ElEF~L~~~~~~~~~~~~~~~~~~ 153 (469)
T PRK09469 81 FEDSTLIIRCDILEPGTMQGYDRDPRSIAKRAEDYLR-----STGIADT--VLFGPEPEFFLFDDIRFGSSISGSHVAID 153 (469)
T ss_pred CCCCcEEEEEEEEECCCCCcCCcCHHHHHHHHHHHHH-----HcCCCcc--eeEecceEEEEEeccccccCccccccccc
Confidence 534477889984 3666667776766666554 6678 6 889999991 1 1110
Q ss_pred -----------------------Ce-eeecCcchHHHHHHHHHHHHHHHHcCCeEEEecCCcC-CCCcccccc----ccc
Q psy10062 209 -----------------------PY-YCGVGANKVYARDIVEAHYRACLYAGIEISGTNAEVM-PSQWEFQDI----AKC 259 (405)
Q Consensus 209 -----------------------~y-yc~vG~~~~~gRdI~eahyrace~aGI~isg~~pE~m-PGQwE~q~~----~~~ 259 (405)
.. ||++.+. ....+++.+..++++.+||+++..|+|.+ ||||||++. +++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~~~~~~i~~~l~~~Gi~v~~~h~E~g~~GQ~Ei~l~~~d~L~a 232 (469)
T PRK09469 154 DIEAAWNSGTKYEGGNKGHRPGVKGGYFPVPPV-DSSQDIRSAMCLVMEEMGLVVEAHHHEVATAGQNEVATRFNTMTKK 232 (469)
T ss_pred cchhcccccccccCCCCCCccCCCccccCCCcc-cchHHHHHHHHHHHHHCCCCcEEeeCCCCCCCeEEEeccCCCHHHH
Confidence 00 3444332 33456777777899999999999999999 699999999 777
Q ss_pred c-cC-----------------------C--CCCCCcceeeecCCCCc---------ccH-HHHHHHHHHHHHHHHHhhcc
Q psy10062 260 Q-DL-----------------------P--IWNYDGSSTYQSEMRED---------NGI-IEIEKAIDKLSKQHLRHIQA 303 (405)
Q Consensus 260 ~-~l-----------------------p--~~nG~G~H~~~S~~r~~---------~g~-~~i~~ai~~l~~~h~~~i~~ 303 (405)
| ++ | +++|||||+|+|+.+++ .|. ...+++|+||+ +|++++.+
T Consensus 233 aD~~~~~k~~vk~va~~~g~~atFmpKP~~~~~GsG~H~H~Sl~~~g~N~F~~~~~~~ls~~~~~fiaGlL-~h~~~l~a 311 (469)
T PRK09469 233 ADEIQIYKYVVHNVAHAFGKTATFMPKPMFGDNGSGMHCHMSLSKNGVNLFAGDKYAGLSEQALYYIGGII-KHAKAINA 311 (469)
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEeccccCCCCCceeEEEEeecCCCccccCCCCcCCcCHHHHHHHHHHH-HHHHHHHh
Confidence 7 44 5 99999999999986532 112 34588999996 77777777
Q ss_pred c-CCCCCCCccccccCCCCCCCccccccccCCcccEEEeCCCcchhccchhhhhhhhccCCcccccccccccCCceeEec
Q psy10062 304 Y-DPKQGKDNERRLTGKHETSSIHDFSAGVANRGASIRIPRDCAEQKKGYLEDRRVANRGASIRIPRDCAEQKKGYLEDR 382 (405)
Q Consensus 304 y-~p~~~~~n~rRL~g~~et~~~~~fS~g~~nR~asiRIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~E~R 382 (405)
+ +|+. ||||||++.++++... +||..||+++||||.. ..++..|||+|
T Consensus 312 ~~~Ptv--NSYkRl~p~~~ap~~~--~WG~~NR~a~iRvp~~---------------------------~~~~~~riE~R 360 (469)
T PRK09469 312 LANPTT--NSYKRLVPGYEAPVML--AYSARNRSASIRIPVV---------------------------ASPKARRIEVR 360 (469)
T ss_pred hhcCCC--chHhhcCCCCcCcCcc--eecCCCCcceEEeccC---------------------------CCCCCceEEec
Confidence 6 9965 9999999666666554 6889999999999953 12335699999
Q ss_pred CCCCCCChHHHHHHHHHHhhc
Q psy10062 383 RPSSNCDPYSVTEALIRTCVL 403 (405)
Q Consensus 383 rp~~~~nPYlv~~~ll~t~~~ 403 (405)
.|+++|||||+++|||++++.
T Consensus 361 ~~da~aNPYL~~AaiLaAGld 381 (469)
T PRK09469 361 FPDPAANPYLCFAALLMAGLD 381 (469)
T ss_pred CCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999998763
No 9
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=99.97 E-value=9.5e-32 Score=257.42 Aligned_cols=174 Identities=22% Similarity=0.287 Sum_probs=140.1
Q ss_pred hhhhhhHHHHHHHhhhhcceeeee---cCCCCCeeeecCc--chHHHHHHHHHHH---HHHHHcCCeEEEecCCcCCCCc
Q psy10062 180 KVYARDIVEAHYRACLYAGIEISG---TNAEGPYYCGVGA--NKVYARDIVEAHY---RACLYAGIEISGTNAEVMPSQW 251 (405)
Q Consensus 180 kv~~rdi~eahyrac~~~GIeqEG---p~~QG~yyc~vG~--~~~~gRdI~eahy---race~aGI~isg~~pE~mPGQw 251 (405)
....+++++.++++|..+||++|. -...|||++.+++ ...++|+++..++ ++|+++|+.+++ +|||..++
T Consensus 64 ~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atF-mpKP~~~~- 141 (259)
T PF00120_consen 64 LDAGEDFLEEIVDALEQAGIPVEQIHHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATF-MPKPFSGD- 141 (259)
T ss_dssp TSTTHHHHHHHHHHHHHCT--EEEEEEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE--SSSSSTTS-
T ss_pred hhHHHHHHHHHHHHHHHhhccccccccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceee-eccccCCc-
Confidence 445689999999999999999995 2334678777765 8899999999998 999999999998 99999999
Q ss_pred ccccccccccCCCCCCCcceeeecCCCC---------cc---cHHHH-HHHHHHHHHHHHHhhccc-CCCCCCCcccccc
Q psy10062 252 EFQDIAKCQDLPIWNYDGSSTYQSEMRE---------DN---GIIEI-EKAIDKLSKQHLRHIQAY-DPKQGKDNERRLT 317 (405)
Q Consensus 252 E~q~~~~~~~lp~~nG~G~H~~~S~~r~---------~~---g~~~i-~~ai~~l~~~h~~~i~~y-~p~~~~~n~rRL~ 317 (405)
+|||||+|+|+.+. ++ ++..+ .++|+||+ +|.++|.+| +|+ .||||||+
T Consensus 142 --------------~GsG~H~h~Sl~~~~~g~n~f~~~~~~~~ls~~~~~flaGll-~h~~~l~a~~~pt--~nsykRl~ 204 (259)
T PF00120_consen 142 --------------NGSGMHLHISLWDAKDGKNLFYDPDGPAGLSELARHFLAGLL-KHAPALTAFTAPT--VNSYKRLV 204 (259)
T ss_dssp --------------S--BEEEEEEECHHHTTEETTBSTTSHGHHHHHHHHHHHHHH-CHHHHHHHCHSTS--TTHHHHSS
T ss_pred --------------CccchhhhhhhhhccccccccccccccccccHHHHHHHHHHH-HHHHHHHhhhCcc--CcchhhCC
Confidence 89999999997642 11 23333 78999995 999999999 894 49999999
Q ss_pred CCCCCCCccccccccCCcccEEEeCCCcchhccchhhhhhhhccCCcccccccccccCCceeEecCCCCCCChHHHHHHH
Q psy10062 318 GKHETSSIHDFSAGVANRGASIRIPRDCAEQKKGYLEDRRVANRGASIRIPRDCAEQKKGYLEDRRPSSNCDPYSVTEAL 397 (405)
Q Consensus 318 g~~et~~~~~fS~g~~nR~asiRIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~E~Rrp~~~~nPYlv~~~l 397 (405)
+.++++.. .+||..||+++||||.. ..++++|||+|+|+++|||||+++||
T Consensus 205 ~~~~ap~~--~~wG~~NR~a~iRi~~~---------------------------~~~~~~~~E~R~~da~aNPYL~laai 255 (259)
T PF00120_consen 205 PGSWAPTY--ISWGYDNRSAAIRIPSG---------------------------GGPKGTRIENRLPDADANPYLALAAI 255 (259)
T ss_dssp STSSSSSB--EEEEESHTTSSEEE-HH---------------------------HHHGGSEEEEESSBTTSSHHHHHHHH
T ss_pred CCccceec--cchhhcccchhhheecc---------------------------ccccccEEeccCCCCCcCHHHHHHHH
Confidence 86655443 58999999999999954 24557899999999999999999999
Q ss_pred HHHh
Q psy10062 398 IRTC 401 (405)
Q Consensus 398 l~t~ 401 (405)
|++.
T Consensus 256 laAG 259 (259)
T PF00120_consen 256 LAAG 259 (259)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9873
No 10
>PLN03036 glutamine synthetase; Provisional
Probab=99.94 E-value=9.7e-27 Score=239.20 Aligned_cols=185 Identities=40% Similarity=0.641 Sum_probs=146.4
Q ss_pred CCCcccCCCCcCCCCCCCcceEEEeeeeecCCCCCCCCeEEEeccccCCCCcccchhhhhhhcCCCCCCCceEEEEEeee
Q psy10062 1 LPIWNYDGSSTYQSEGSNSDTFLHPVAIFKDPFRLGNNILMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATYIWID 80 (405)
Q Consensus 1 lp~w~fDGSSt~qa~g~nSd~~L~P~ai~~DPfr~~~~ilv~c~v~~~~~~~~~~~~~~~~y~~lP~~~~~~~a~yiwid 80 (405)
+|.|+||||||+|+++++||++|+|++++.|||+.+++++|+||++ ..++.|.+.+.
T Consensus 110 ~~~w~fDGSs~g~a~~~~sD~~l~PDTl~~~Pw~~~~~a~Vlcd~y--------------~~dG~P~~~dp--------- 166 (432)
T PLN03036 110 LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTY--------------TPAGEPIPTNK--------- 166 (432)
T ss_pred CCceeeecCccCCCcCCCCCEEEEccEEEECCcCCCCeEEEEEEEE--------------CCCCCCCCCCH---------
Confidence 5899999999999999999999999999999999888999999999 56778888888
Q ss_pred CCCcccccccccccCcccCCCCCCCcchhhhhcCCccCCChhhhcccccccccccCCCcccccceeEEeeCC-CCCceee
Q psy10062 81 GTGEGIRAKDRTLTGVVKNVSGRPDQVYYLIMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATYIWIDG-TGEGIRA 159 (405)
Q Consensus 81 g~g~~~R~k~rtl~~~~~~~~~~P~w~fd~~~~~~~~GSS~~qa~~~~~SD~~L~~P~~~~~~~~~yi~~dp-~G~~~~v 159 (405)
|.+.+....... ..+..+| +++|+||.+.+. .+++.++
T Consensus 167 ------R~~L~~vl~~~~------------------------------~~g~~p~-----~G~E~EF~Lf~~~~~~~~G~ 205 (432)
T PLN03036 167 ------RHRAAEIFSNKK------------------------------VVDEVPW-----FGIEQEYTLLQQNVKWPLGW 205 (432)
T ss_pred ------HHHHHHHHHHhc------------------------------ccCCeEE-----EEeeeEEEEEEcccccccCC
Confidence 886654221110 1111222 468888844332 2222222
Q ss_pred ecCCCCCCCCCCcchhhhhhhhhhhhHHHHHHHhhhhcceeeeecCCC---CCeeeecCc--chHHHHHHHHHHH---HH
Q psy10062 160 KCSQLPLLRKGPYYCGVGANKVYARDIVEAHYRACLYAGIEISGTNAE---GPYYCGVGA--NKVYARDIVEAHY---RA 231 (405)
Q Consensus 160 ~c~~~P~~~qgryyc~~g~~kv~~rdi~eahyrac~~~GIeqEGp~~Q---G~yyc~vG~--~~~~gRdI~eahy---ra 231 (405)
.....+.++++|||..+.++.++++|+++||++|..+||++++.+.+ ||||++++. ...+||+++..+| ++
T Consensus 206 -~~~~~p~p~g~yy~~~~~d~~~~~~i~~~i~~a~~~~GI~Ie~~~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~V 284 (432)
T PLN03036 206 -PVGAYPGPQGPYYCGAGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERI 284 (432)
T ss_pred -CCCCccCCCCCcCCCchhhhhhHHHHHHHHHHHHHHCCCCeEEEEcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHH
Confidence 11124568999999999999999999999999999999999984433 788888876 7799999999998 99
Q ss_pred HHHcCCeEEEecCCcCCCCc
Q psy10062 232 CLYAGIEISGTNAEVMPSQW 251 (405)
Q Consensus 232 ce~aGI~isg~~pE~mPGQw 251 (405)
|+++|+.+|+ ||||++|+|
T Consensus 285 A~~~Gl~ATF-MPKP~~gd~ 303 (432)
T PLN03036 285 TEQAGVVLTL-DPKPIEGDW 303 (432)
T ss_pred HHHhCCEEEE-cCCcCCCCc
Confidence 9999999998 999998875
No 11
>PLN02284 glutamine synthetase
Probab=99.82 E-value=1.2e-19 Score=182.52 Aligned_cols=184 Identities=41% Similarity=0.654 Sum_probs=135.1
Q ss_pred CCcccCCCCcCCCCCCCcceEEEeeeeecCCCCCCCCeEEEeccccCCCCcccchhhhhhhcCCCCCCCceEEEEEeeeC
Q psy10062 2 PIWNYDGSSTYQSEGSNSDTFLHPVAIFKDPFRLGNNILMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATYIWIDG 81 (405)
Q Consensus 2 p~w~fDGSSt~qa~g~nSd~~L~P~ai~~DPfr~~~~ilv~c~v~~~~~~~~~~~~~~~~y~~lP~~~~~~~a~yiwidg 81 (405)
|.|+|||||++|+++.+||++|+|+..+.+||+.+++.+|+||++ ..++.|.+.+-
T Consensus 51 ~~~~fdGssi~~~~~~~sD~~l~PDt~~~~Pw~~~~~~~vlcdv~--------------~~dG~p~~~dP---------- 106 (354)
T PLN02284 51 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVMCDAY--------------TPAGEPIPTNK---------- 106 (354)
T ss_pred CceeecCCCCCCccCCCceEEEEccEEEECCCCCCCeEEEEEEEE--------------CCCCCCCCCCH----------
Confidence 789999999999999999999999999999999878899999998 34666776666
Q ss_pred CCcccccccccccCcccCCCCCCCcchhhhhcCCccCCChhhhcccccccccccCCCcccccceeE-EeeCCCCCceeee
Q psy10062 82 TGEGIRAKDRTLTGVVKNVSGRPDQVYYLIMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATY-IWIDGTGEGIRAK 160 (405)
Q Consensus 82 ~g~~~R~k~rtl~~~~~~~~~~P~w~fd~~~~~~~~GSS~~qa~~~~~SD~~L~~P~~~~~~~~~y-i~~dp~G~~~~v~ 160 (405)
|...+......+.. .+ . |+ +++|.|| +|......+.++
T Consensus 107 -----R~vL~r~~~~~~~~-g~-----------------------------~---~~--~G~E~EF~lf~~~~~~~~g~- 145 (354)
T PLN02284 107 -----RAKAAKIFSHPDVA-AE-----------------------------E---PW--YGIEQEYTLLQKDVKWPLGW- 145 (354)
T ss_pred -----HHHHHHHHHHHHhc-CC-----------------------------c---ee--EEeceEEEEEecCCcccCCC-
Confidence 77654322111000 00 0 11 3566677 443221111121
Q ss_pred cCCCCCCCCCCcchhhhhhhhhhhhHHHHHHHhhhhcceeeeecC---CCCCeeeecC--cchHHHHHHHHHHH---HHH
Q psy10062 161 CSQLPLLRKGPYYCGVGANKVYARDIVEAHYRACLYAGIEISGTN---AEGPYYCGVG--ANKVYARDIVEAHY---RAC 232 (405)
Q Consensus 161 c~~~P~~~qgryyc~~g~~kv~~rdi~eahyrac~~~GIeqEGp~---~QG~yyc~vG--~~~~~gRdI~eahy---rac 232 (405)
.....+.+++.|||....+...+++++++++++|..+||++|+.+ +-||||+.++ +...++|+++..++ ++|
T Consensus 146 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~h~E~apGQ~Ei~l~~~d~l~aAD~~~~~K~vvk~vA 225 (354)
T PLN02284 146 PVGGYPGPQGPYYCGVGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPVVGISAGDQLWVARYILERIT 225 (354)
T ss_pred CCCCcccCCCCcccCcchhhHHHHHHHHHHHHHHHHCCCCeEEEEcCcCCCceEEEecCCcHHHHHHHHHHHHHHHHHHH
Confidence 011134578889999888888889999999999999999999632 2256666554 47899999999998 999
Q ss_pred HHcCCeEEEecCCcCCCCc
Q psy10062 233 LYAGIEISGTNAEVMPSQW 251 (405)
Q Consensus 233 e~aGI~isg~~pE~mPGQw 251 (405)
+++|+.+|+ ||||.+|+|
T Consensus 226 ~~~Gl~ATF-MPKP~~~~~ 243 (354)
T PLN02284 226 EIAGVVVSF-DPKPIPGDW 243 (354)
T ss_pred HHhCCEEEE-cCCCCCCCC
Confidence 999999998 999988764
No 12
>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism]
Probab=99.50 E-value=1.7e-14 Score=149.52 Aligned_cols=171 Identities=20% Similarity=0.179 Sum_probs=125.0
Q ss_pred CCceEEEEEeeeCCCcccccccccccCcccCCCCCCCcc--hhhhhcCCccCCChhhhcccccccccccCCCccccccee
Q psy10062 69 ADKIQATYIWIDGTGEGIRAKDRTLTGVVKNVSGRPDQV--YYLIMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQAT 146 (405)
Q Consensus 69 ~~~~~a~yiwidg~g~~~R~k~rtl~~~~~~~~~~P~w~--fd~~~~~~~~GSS~~qa~~~~~SD~~L~~P~~~~~~~~~ 146 (405)
.+.-.+.++|+|..| .+|+|+-.+............|. || |||+.++.....||++|+ |++ .|
T Consensus 13 ~~V~~v~~~f~D~~G-~~r~k~ip~~~~~~~~~~~~~~g~~fd--------gss~~g~~~i~~sDm~l~-Pd~-----~T 77 (443)
T COG0174 13 NGVKFVDLRFTDLNG-VLRGKTIPAEKPVSVLAQLFEGGVVFD--------GSSIAGFEGIGESDMVLK-PDL-----ST 77 (443)
T ss_pred CCceEEEEEEECCCC-CeeeEEEecccchhHHHhhhccCcCcC--------CccccccCCCCCCCEEEe-ecc-----Cc
Confidence 345678999999999 47777655543112223334454 66 999999999669999999 998 66
Q ss_pred E-EeeCCCCCceeeecCC-----CCCCCCCCcchhhhhhhhhhhhHHHHHHHhhhhcceeee-------e-------cCC
Q psy10062 147 Y-IWIDGTGEGIRAKCSQ-----LPLLRKGPYYCGVGANKVYARDIVEAHYRACLYAGIEIS-------G-------TNA 206 (405)
Q Consensus 147 y-i~~dp~G~~~~v~c~~-----~P~~~qgryyc~~g~~kv~~rdi~eahyrac~~~GIeqE-------G-------p~~ 206 (405)
+ +.||..+...+|+|+. +|.+.+.|..++...++.. +.+++. .++|.|+| + +.+
T Consensus 78 ~~~~Pw~~~~ta~v~cdv~~~~g~p~~~dPR~vlkr~~~~l~-----~~G~~~-~~~g~E~EFfLfd~~~~~~~~~~~~~ 151 (443)
T COG0174 78 LVVDPWREGPTARVLCDVYDPDGTPYPRDPRSVLKRALARLK-----DEGLAP-AVVGPELEFFLFDRDGRDPDGGRPAD 151 (443)
T ss_pred eeeCCCCCCCcEEEEEEEECCCCCcCCCChHHHHHHHHHHHH-----hcCCcc-ceeecceeEEEeecccCCcccCccCC
Confidence 6 8888888899999997 4555566666666655544 677774 59999999 1 456
Q ss_pred CCCeeeecCcchHHHHHHHHHHHHHHHHcCCeEEEecCCcCCCCcccccc----cccc-cC
Q psy10062 207 EGPYYCGVGANKVYARDIVEAHYRACLYAGIEISGTNAEVMPSQWEFQDI----AKCQ-DL 262 (405)
Q Consensus 207 QG~yyc~vG~~~~~gRdI~eahyrace~aGI~isg~~pE~mPGQwE~q~~----~~~~-~l 262 (405)
+|+||...+.+. ..+|..+.+.+++++|++++.+|+|++||||||++. +++| ++
T Consensus 152 ~~~yf~~~~~~~--~~~~~~di~~~l~~~Gi~ie~~hhEva~gQ~EI~~~~~~~l~~AD~~ 210 (443)
T COG0174 152 KGGYFDVAPLDE--AEDFRRDIVEALEAAGIEIEAIHHEVAPGQFEINLRFDDALKAADQI 210 (443)
T ss_pred CCcccCcccccc--HHHHHHHHHHHHHHCCCCcEeccccccCCceEEecCCCCHHHHHHHH
Confidence 788665555432 233444444599999999999999999999999998 6666 44
No 13
>PF03951 Gln-synt_N: Glutamine synthetase, beta-Grasp domain; InterPro: IPR008147 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) has, currently, only been found in Bacteroides fragilis and in Butyrivibrio fibrisolvens. It is a hexamer of identical chains. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006542 glutamine biosynthetic process, 0006807 nitrogen compound metabolic process; PDB: 3NG0_A 2D3A_A 2D3C_E 2D3B_H 1LGR_C 2GLS_I 1F1H_B 1FPY_C 2LGS_D 1F52_A ....
Probab=98.90 E-value=1.2e-09 Score=89.41 Aligned_cols=43 Identities=30% Similarity=0.434 Sum_probs=40.2
Q ss_pred ccCCCCc-CCCCCCCcceEEEee--eeecCCCCCCC--CeEEEecccc
Q psy10062 5 NYDGSST-YQSEGSNSDTFLHPV--AIFKDPFRLGN--NILMSHGVLG 47 (405)
Q Consensus 5 ~fDGSSt-~qa~g~nSd~~L~P~--ai~~DPfr~~~--~ilv~c~v~~ 47 (405)
+|||||| +|+.+.+|||+|+|+ +.+.|||+.++ +++|+|+++.
T Consensus 36 ~fDGSSi~g~~~~~~SDm~l~Pd~~t~~~~P~~~~~~~~~~v~cdv~~ 83 (84)
T PF03951_consen 36 GFDGSSIRGFATIEESDMYLKPDPSTFFIDPWRPDPGKTARVICDVYD 83 (84)
T ss_dssp EEECCGTTTSSBSCCEEEEEEEEGGEEEESTTTSTT-TEEEEEEEEES
T ss_pred CCCcccCcCcccCCCCCEEEecCcccEEECccCCCCceEEEEEEEeEC
Confidence 8999999 999999999999999 99999999876 9999999983
No 14
>TIGR00653 GlnA glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation.
Probab=98.39 E-value=2.7e-06 Score=89.13 Aligned_cols=68 Identities=16% Similarity=-0.002 Sum_probs=55.3
Q ss_pred hhhhHHHHHHHhhhhcceeeeec---CCCCCeeeecCc--chHHHHHHHHHHH---HHHHHcCCeEEEecCCcCCCC
Q psy10062 182 YARDIVEAHYRACLYAGIEISGT---NAEGPYYCGVGA--NKVYARDIVEAHY---RACLYAGIEISGTNAEVMPSQ 250 (405)
Q Consensus 182 ~~rdi~eahyrac~~~GIeqEGp---~~QG~yyc~vG~--~~~~gRdI~eahy---race~aGI~isg~~pE~mPGQ 250 (405)
...++.+.-+++|..+||+++.. .+-|||++.+.+ ...++|.++..++ ++|.++|+.+|+ ||||..++
T Consensus 180 ~~~~~~~~i~~~l~~~Gi~v~~~~~E~gpGQ~Ei~l~~~~~l~aAD~~~~~k~~ik~vA~~~G~~ATF-mpKP~~~~ 255 (460)
T TIGR00653 180 TAVDIRREMVLYLEQLGFDVEVHHHEVATGQHEIDFKFDTLLKTADDIQTYKYVVKNVARKHGKTATF-MPKPLFGD 255 (460)
T ss_pred cHHHHHHHHHHHHHHcCCCceeeecCcCCCceeEecCCCCHHHHHHHHHHHHHHHHHHHHHhCCEEEE-ecccCCCC
Confidence 34577788888899999999952 223677776654 7789999999887 999999999998 99998776
No 15
>PF03951 Gln-synt_N: Glutamine synthetase, beta-Grasp domain; InterPro: IPR008147 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) has, currently, only been found in Bacteroides fragilis and in Butyrivibrio fibrisolvens. It is a hexamer of identical chains. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006542 glutamine biosynthetic process, 0006807 nitrogen compound metabolic process; PDB: 3NG0_A 2D3A_A 2D3C_E 2D3B_H 1LGR_C 2GLS_I 1F1H_B 1FPY_C 2LGS_D 1F52_A ....
Probab=98.28 E-value=6.3e-07 Score=73.48 Aligned_cols=76 Identities=17% Similarity=0.136 Sum_probs=53.5
Q ss_pred eEEEEEeeeCCCcccccccccccCcccCCCCCCCcchhhhhcCCccCCChhhhcccccccccccCCCcccccceeE-Eee
Q psy10062 72 IQATYIWIDGTGEGIRAKDRTLTGVVKNVSGRPDQVYYLIMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATY-IWI 150 (405)
Q Consensus 72 ~~a~yiwidg~g~~~R~k~rtl~~~~~~~~~~P~w~fd~~~~~~~~GSS~~qa~~~~~SD~~L~~P~~~~~~~~~y-i~~ 150 (405)
.+++|+|+|+.|. +|+++-......+.+.+.+. .|| |||+.+.....+||++|. |+. .|+ +.|
T Consensus 3 ~~v~~~f~D~~G~-~~~~~i~~~~~~~~~~~~g~-~fD--------GSSi~g~~~~~~SDm~l~-Pd~-----~t~~~~P 66 (84)
T PF03951_consen 3 KFVDLQFTDLFGR-LKHVTIPASEFDEDALEDGI-GFD--------GSSIRGFATIEESDMYLK-PDP-----STFFIDP 66 (84)
T ss_dssp EEEEEEEE-TTSS-EEEEEEEGCCESCSGGGS-E-EEE--------CCGTTTSSBSCCEEEEEE-EEG-----GEEEEST
T ss_pred EEEEEEEEcCCCC-cceEEEEHHHCCchHhhCCC-CCC--------cccCcCcccCCCCCEEEe-cCc-----ccEEECc
Confidence 4789999999993 33333333344456667778 999 999955555559999999 987 454 777
Q ss_pred CCCC--CceeeecCC
Q psy10062 151 DGTG--EGIRAKCSQ 163 (405)
Q Consensus 151 dp~G--~~~~v~c~~ 163 (405)
|..+ ..++|+|++
T Consensus 67 ~~~~~~~~~~v~cdv 81 (84)
T PF03951_consen 67 WRPDPGKTARVICDV 81 (84)
T ss_dssp TTSTT-TEEEEEEEE
T ss_pred cCCCCceEEEEEEEe
Confidence 7644 599999986
No 16
>TIGR03105 gln_synth_III glutamine synthetase, type III. This family consists of the type III isozyme of glutamine synthetase, originally described in Rhizobium meliloti, where types I and II also occur.
Probab=98.15 E-value=2.5e-05 Score=81.45 Aligned_cols=76 Identities=13% Similarity=0.057 Sum_probs=59.9
Q ss_pred cchhhhhhhhhhhhHHHHHHHhhhhcceeeeecC---CCCCeeeecCc--chHHHHHHHHHHH---HHHHHcCCeEEEec
Q psy10062 172 YYCGVGANKVYARDIVEAHYRACLYAGIEISGTN---AEGPYYCGVGA--NKVYARDIVEAHY---RACLYAGIEISGTN 243 (405)
Q Consensus 172 yyc~~g~~kv~~rdi~eahyrac~~~GIeqEGp~---~QG~yyc~vG~--~~~~gRdI~eahy---race~aGI~isg~~ 243 (405)
+|..... ...+++.+..+++|..+||++|..+ .-|||++.+.+ ...++|+++..++ ++|.++|+.+|+ +
T Consensus 147 ~~~~~~~--~~~~~~~~~i~~~l~~~gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~vk~vA~~~Gl~atF-m 223 (435)
T TIGR03105 147 CYDQRGL--MRRYDVLTEISDAMNALGWDPYQNDHEDANGQFEMNFTYADALTTADRHAFFRYMVKEIAEKHGMRATF-M 223 (435)
T ss_pred CCCCcch--hhhhHHHHHHHHHHHHCCCCeEEeecCcCCCceEEecCcchHHHHHHHHHHHHHHHHHHHHHhCCEEEe-c
Confidence 3443433 3457999999999999999999522 23677776655 7789999999887 999999999998 9
Q ss_pred CCcCCCC
Q psy10062 244 AEVMPSQ 250 (405)
Q Consensus 244 pE~mPGQ 250 (405)
|||..++
T Consensus 224 pKP~~~~ 230 (435)
T TIGR03105 224 PKPFADL 230 (435)
T ss_pred CccCCCC
Confidence 9997654
No 17
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=97.98 E-value=1.5e-06 Score=83.77 Aligned_cols=110 Identities=17% Similarity=0.154 Sum_probs=72.4
Q ss_pred CCcchhhhhhhhhhhhHHHHHHHhhhhcceeeee---------cCC--C---------CCeeeecCcchHHHHHHHHHHH
Q psy10062 170 GPYYCGVGANKVYARDIVEAHYRACLYAGIEISG---------TNA--E---------GPYYCGVGANKVYARDIVEAHY 229 (405)
Q Consensus 170 gryyc~~g~~kv~~rdi~eahyrac~~~GIeqEG---------p~~--Q---------G~yyc~vG~~~~~gRdI~eahy 229 (405)
.|..|+...+++. +.+|+ +++|+|+|- ..+ . ..-+|...+ ....++++++++
T Consensus 4 PR~~Lkr~~~~~~-----~~g~~--~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~ 75 (259)
T PF00120_consen 4 PRSILKRVLERLE-----EMGLS--FKVGFELEFYLFDRDDDGGWPRPSGYPDEPGQDYGGYYSLSP-LDAGEDFLEEIV 75 (259)
T ss_dssp HHHHHHHHHHHHH-----HTCCE--EEEEEEEEEEEESTCEETTSSSTTSEESESSSTTTBSSTTTT-TSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HhCCc--eEEEEeEEEEEeccCcccccccccccccccccccCCcCCCch-hhHHHHHHHHHH
Confidence 3455555555543 56677 999999991 011 0 111223222 346788999999
Q ss_pred HHHHHcCCeEEEecCCcCCCCcccccc----cccccCCCCCCCcceeeecCCCCcccHHHHHHHHHHHHHHHHHhhcccC
Q psy10062 230 RACLYAGIEISGTNAEVMPSQWEFQDI----AKCQDLPIWNYDGSSTYQSEMREDNGIIEIEKAIDKLSKQHLRHIQAYD 305 (405)
Q Consensus 230 race~aGI~isg~~pE~mPGQwE~q~~----~~~~~lp~~nG~G~H~~~S~~r~~~g~~~i~~ai~~l~~~h~~~i~~y~ 305 (405)
++|+++||+++..|+|.+||||||++. ++++ +..-.++..|..+.++|.-+....
T Consensus 76 ~~l~~~Gi~ve~~h~E~gpgQ~Ei~~~~~~~l~aa--------------------D~~~~~k~~ik~vA~~~Gl~atFm- 134 (259)
T PF00120_consen 76 DALEQAGIPVEQIHHEVGPGQYEINLGPCDPLEAA--------------------DNLVLFKEIIKEVARKHGLTATFM- 134 (259)
T ss_dssp HHHHHCT--EEEEEEESSTTEEEEEEEEEECHHHH--------------------HHHHHHHHHHHHHHHHTTEEEE-S-
T ss_pred HHHHHhhccccccccccchHhhccccccCcHHHHH--------------------HHHHHHHHHHHHHHHHcCCceeee-
Confidence 999999999999999999999999987 3333 223445678888877776655544
Q ss_pred CCC
Q psy10062 306 PKQ 308 (405)
Q Consensus 306 p~~ 308 (405)
||.
T Consensus 135 pKP 137 (259)
T PF00120_consen 135 PKP 137 (259)
T ss_dssp SSS
T ss_pred ccc
Confidence 665
No 18
>PRK09469 glnA glutamine synthetase; Provisional
Probab=97.97 E-value=5.6e-05 Score=79.62 Aligned_cols=67 Identities=15% Similarity=0.070 Sum_probs=54.7
Q ss_pred hhhHHHHHHHhhhhcceeeee----cCCCCCeeeecC--cchHHHHHHHHHHH---HHHHHcCCeEEEecCCcCCCC
Q psy10062 183 ARDIVEAHYRACLYAGIEISG----TNAEGPYYCGVG--ANKVYARDIVEAHY---RACLYAGIEISGTNAEVMPSQ 250 (405)
Q Consensus 183 ~rdi~eahyrac~~~GIeqEG----p~~QG~yyc~vG--~~~~~gRdI~eahy---race~aGI~isg~~pE~mPGQ 250 (405)
..++.+.-+++|..+||+++. .++.|||+..+. +...++|.++..++ ++|.++|+.+|+ ||||..++
T Consensus 189 ~~~~~~~i~~~l~~~Gi~v~~~h~E~g~~GQ~Ei~l~~~d~L~aaD~~~~~k~~vk~va~~~g~~atF-mpKP~~~~ 264 (469)
T PRK09469 189 SQDIRSAMCLVMEEMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHAFGKTATF-MPKPMFGD 264 (469)
T ss_pred hHHHHHHHHHHHHHCCCCcEEeeCCCCCCCeEEEeccCCCHHHHHHHHHHHHHHHHHHHHHhCCEEEE-eccccCCC
Confidence 467888888999999999995 122466766554 47789999999998 999999999998 99998766
No 19
>COG3968 Uncharacterized protein related to glutamine synthetase [General function prediction only]
Probab=96.86 E-value=0.0057 Score=64.67 Aligned_cols=71 Identities=24% Similarity=0.295 Sum_probs=49.2
Q ss_pred cCCCCC----eeeecCcchHHHHHHHHHHHHHHHHcCCeEEEecCCcCCCCcccccccccc-------cC----------
Q psy10062 204 TNAEGP----YYCGVGANKVYARDIVEAHYRACLYAGIEISGTNAEVMPSQWEFQDIAKCQ-------DL---------- 262 (405)
Q Consensus 204 p~~QG~----yyc~vG~~~~~gRdI~eahyrace~aGI~isg~~pE~mPGQwE~q~~~~~~-------~l---------- 262 (405)
+.|.|+ -|+++=+... -.+|.+.-...-..||++-.-|-|++||||||--..+.+ ||
T Consensus 249 ~ppkGQEldDHYFGaipeRV--~~FM~Dve~~LyaLGIpaKTrHNEVAPgQfEIApife~~N~A~DhqQL~M~vLk~tA~ 326 (724)
T COG3968 249 PPPKGQELDDHYFGAIPERV--SAFMKDVEKELYALGIPAKTRHNEVAPGQFEIAPIFESGNLATDHQQLVMEVLKKTAL 326 (724)
T ss_pred CCCCCccccchhccccHHHH--HHHHHHHHHHHHHcCCcccccccccCCCceeeeeeeccccccchHHHHHHHHHHHHHH
Confidence 445554 2555544322 234555556777889999999999999999997763222 22
Q ss_pred -----------C--CCCCCcceeeecC
Q psy10062 263 -----------P--IWNYDGSSTYQSE 276 (405)
Q Consensus 263 -----------p--~~nG~G~H~~~S~ 276 (405)
| .-||||-|+|.|.
T Consensus 327 KhGlVCLLHEKPFAGiNGSGKH~NWSm 353 (724)
T COG3968 327 KHGLVCLLHEKPFAGINGSGKHNNWSM 353 (724)
T ss_pred hcceEEEeecCCccCcCCCCCcccccc
Confidence 7 8899999999994
No 20
>COG4456 VagC Virulence-associated protein and related proteins [Function unknown]
Probab=37.81 E-value=24 Score=29.18 Aligned_cols=12 Identities=33% Similarity=0.958 Sum_probs=11.2
Q ss_pred CCcccEEEeCCC
Q psy10062 333 ANRGASIRIPRD 344 (405)
Q Consensus 333 ~nR~asiRIP~~ 344 (405)
.|||.+||||.+
T Consensus 8 snrSQAVRLP~e 19 (74)
T COG4456 8 SNRSQAVRLPKE 19 (74)
T ss_pred cCCeeeEecchh
Confidence 699999999987
No 21
>PF12224 Amidoligase_2: Putative amidoligase enzyme; InterPro: IPR022025 This family of proteins are likely to act as amidoligase enzymes [] Protein in this family are found in conserved gene neighbourhoods encoding a glutamine amidotransferase-like thiol peptidase (in proteobacteria) or an Aig2 family cyclotransferase protein (in firmicutes) [].
Probab=23.01 E-value=1.5e+02 Score=28.12 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=18.9
Q ss_pred CCceeEecCCCCCCChHHHHHHH
Q psy10062 375 KKGYLEDRRPSSNCDPYSVTEAL 397 (405)
Q Consensus 375 ~~g~~E~Rrp~~~~nPYlv~~~l 397 (405)
.++-+|.|.|.+.-||-.+...+
T Consensus 223 ~~~TvEFR~~~~s~d~~~~~~wi 245 (252)
T PF12224_consen 223 PRPTVEFRQPNGSLDAEEISAWI 245 (252)
T ss_pred CCCeEEEecCCCCCCHHHHHHHH
Confidence 35689999999999998776654
No 22
>KOG0496|consensus
Probab=20.09 E-value=2.2e+02 Score=32.18 Aligned_cols=84 Identities=19% Similarity=0.323 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHcCCeEEEe-----cCCcCCCCcccccc------cccc-cC---------C----CCCCCcceeeec-
Q psy10062 222 RDIVEAHYRACLYAGIEISGT-----NAEVMPSQWEFQDI------AKCQ-DL---------P----IWNYDGSSTYQS- 275 (405)
Q Consensus 222 RdI~eahyrace~aGI~isg~-----~pE~mPGQwE~q~~------~~~~-~l---------p----~~nG~G~H~~~S- 275 (405)
++.|+++.+-+++.|+++--| .|||-|||+.|.-. |+++ +. | .||--|.-.=.-
T Consensus 48 pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~ 127 (649)
T KOG0496|consen 48 PEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRN 127 (649)
T ss_pred hhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhh
Confidence 789999999999999986533 69999999976655 5555 22 5 888777652211
Q ss_pred ----CCCCcccH--HHHHHHHHHHHHHHHHhhcccCCCC
Q psy10062 276 ----EMREDNGI--IEIEKAIDKLSKQHLRHIQAYDPKQ 308 (405)
Q Consensus 276 ----~~r~~~g~--~~i~~ai~~l~~~h~~~i~~y~p~~ 308 (405)
..|.++.- .++++..++|..++. ..|..++
T Consensus 128 ~pg~~~Rt~nepfk~~~~~~~~~iv~~mk---~L~~~qG 163 (649)
T KOG0496|consen 128 VPGIVFRTDNEPFKAEMERWTTKIVPMMK---KLFASQG 163 (649)
T ss_pred CCceEEecCChHHHHHHHHHHHHHHHHHH---HHHhhcC
Confidence 23544322 455777777765444 4444443
Done!