Query psy10062
Match_columns 405
No_of_seqs 211 out of 865
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 16:54:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10062.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10062hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fky_A Glutamine synthetase; b 100.0 3.2E-64 1.1E-68 504.6 14.3 292 54-404 7-355 (370)
2 2ojw_A Glutamine synthetase; a 100.0 1.1E-61 3.8E-66 488.2 16.7 304 50-405 24-382 (384)
3 2d3a_A Glutamine synthetase; l 100.0 2.8E-60 9.7E-65 473.7 16.0 294 58-405 6-355 (356)
4 4hpp_A Probable glutamine synt 100.0 1.8E-43 6.2E-48 361.8 7.9 276 74-403 10-355 (443)
5 3ng0_A Glutamine synthetase; G 100.0 3.5E-42 1.2E-46 354.5 15.3 306 4-403 50-384 (473)
6 4acf_A Glutamine synthetase 1; 100.0 3.5E-42 1.2E-46 355.0 14.2 188 168-403 189-397 (486)
7 1f52_A Glutamine synthetase; A 100.0 5.5E-41 1.9E-45 344.9 18.3 305 3-402 46-379 (468)
8 3qaj_A Glutamine synthetase; A 100.0 1.8E-41 6.1E-46 347.1 11.2 269 74-403 21-356 (444)
9 2j9i_A Glutamate-ammonia ligas 100.0 7.9E-41 2.7E-45 340.1 1.5 271 72-403 15-342 (421)
10 3o6x_A Glutamine synthetase; t 99.9 1.8E-24 6E-29 231.4 8.6 263 118-402 130-497 (729)
11 3fky_A Glutamine synthetase; b 99.9 2.5E-23 8.5E-28 208.7 13.2 183 1-251 54-244 (370)
12 2d3a_A Glutamine synthetase; l 99.8 4.1E-21 1.4E-25 191.7 11.6 184 1-251 50-243 (356)
13 2ojw_A Glutamine synthetase; a 99.8 1.3E-20 4.4E-25 189.8 12.7 184 1-252 76-267 (384)
14 3ng0_A Glutamine synthetase; G 99.3 6E-13 2.1E-17 137.3 5.2 188 74-308 20-262 (473)
15 1f52_A Glutamine synthetase; A 99.2 1.2E-12 4E-17 134.8 1.4 189 74-308 17-259 (468)
16 4hpp_A Probable glutamine synt 99.2 4.3E-11 1.5E-15 122.7 11.8 155 17-250 62-230 (443)
17 4acf_A Glutamine synthetase 1; 99.2 4.4E-12 1.5E-16 131.0 1.5 191 74-308 29-274 (486)
18 2j9i_A Glutamate-ammonia ligas 99.2 6.2E-12 2.1E-16 128.0 2.0 163 4-246 45-221 (421)
19 3qaj_A Glutamine synthetase; A 99.1 2.5E-11 8.6E-16 124.5 5.8 173 4-250 50-239 (444)
20 3o6x_A Glutamine synthetase; t 97.4 0.00014 4.7E-09 78.8 5.5 75 173-250 254-336 (729)
No 1
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-64 Score=504.61 Aligned_cols=292 Identities=47% Similarity=0.754 Sum_probs=239.7
Q ss_pred cchhhhhhhcCCCCCCCceEEEEEeeeCCCcccccccccccCcccCCCCCCCcchhhhhcCCccCCChhhhccccccccc
Q psy10062 54 MNKTVLDKYLALPVPADKIQATYIWIDGTGEGIRAKDRTLTGVVKNVSGRPDQVYYLIMSHGVLGNSPNAAMNKTVLDKY 133 (405)
Q Consensus 54 ~~~~~~~~y~~lP~~~~~~~a~yiwidg~g~~~R~k~rtl~~~~~~~~~~P~w~fd~~~~~~~~GSS~~qa~~~~~SD~~ 133 (405)
.+.+++++|+.|++ .++++++|+|+|++| .+|+|++++...++.++++|.|+|| |||+++.... +||++
T Consensus 7 ~~~~~~~~~~~l~~-~~i~~v~~~~~D~~G-~lR~K~~~~~~~~~~~~~~~~~~fD--------Gss~g~~~~~-~sD~~ 75 (370)
T 3fky_A 7 EKTQILQKYLELDQ-RGRIIAEYVWIDGTG-NLRSKGRTLKKRITSIDQLPEWNFD--------GSSTNQAPGH-DSDIY 75 (370)
T ss_dssp ---------------CCCEEEEEEEECSSS-CEEEEEEEESSCCCSGGGSCCEEEC--------GGGTTSSCCC-C--EE
T ss_pred ccHHHHHHHhCccc-CCeEEEEEEEEcCCC-CeEEEEEECccccchHHhCCccccC--------CcccccccCC-CCCee
Confidence 34578899999998 889999999999999 8999999999999999999999999 9999877666 99999
Q ss_pred ccCCCcccccceeEEeeCC--CCCceeeecCC-----CCCCCCCCcchhhhhhhhhhhhHHHHHHHhhhhcceeee----
Q psy10062 134 LALPVPADKIQATYIWIDG--TGEGIRAKCSQ-----LPLLRKGPYYCGVGANKVYARDIVEAHYRACLYAGIEIS---- 202 (405)
Q Consensus 134 L~~P~~~~~~~~~yi~~dp--~G~~~~v~c~~-----~P~~~qgryyc~~g~~kv~~rdi~eahyrac~~~GIeqE---- 202 (405)
|+ |+. ++++| .++..+|+|+. +|.+.+.|+.|+..++++.|.. +++|+|+|
T Consensus 76 l~-Pdt--------~~~~Pw~~~~~a~vlcd~~~~dG~P~~~~pR~iLkr~~~~~~g~~---------~~~G~E~EF~Lf 137 (370)
T 3fky_A 76 LK-PVA--------YYPDPFRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLFAAHKDEE---------IWFGLEQEYTLF 137 (370)
T ss_dssp EE-EEE--------EEECTTTCTTCEEEEEEEECTTSSBCTTCCHHHHHHHHHHTGGGC---------CEEEEEEEEEEE
T ss_pred Ee-eeE--------EEEcCCCCCCeEEEEEEEEcCCCCCCCCCHHHHHHHHHHHhcCCC---------ceEEeeeEEEEE
Confidence 99 964 55444 66789999986 8999999999999998877555 99999999
Q ss_pred ---e----------cCCCCCeeeecCcchHHHHHHHHHHHHHHHHcCCeEEEecCCcCCCCcccccc----cccc-cC--
Q psy10062 203 ---G----------TNAEGPYYCGVGANKVYARDIVEAHYRACLYAGIEISGTNAEVMPSQWEFQDI----AKCQ-DL-- 262 (405)
Q Consensus 203 ---G----------p~~QG~yyc~vG~~~~~gRdI~eahyrace~aGI~isg~~pE~mPGQwE~q~~----~~~~-~l-- 262 (405)
+ |.+||+|||.++....++++|+++++++|+++||+++++|+|++||||||++. +++| ++
T Consensus 138 ~~~~~~~~~p~~~~p~~~g~yy~~~~~~~~~~~~i~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~~~~~~~l~aAD~~~~ 217 (370)
T 3fky_A 138 DMYDDVYGWPKGGYPAPQGPYYCGVGAGKVYARDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWM 217 (370)
T ss_dssp CTTSSBTTCCTTSBCSCSSSCTTCCSTTTCSCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHH
T ss_pred ccCCCcccCCCCCccCCCCccccccchhhHHHHHHHHHHHHHHHHcCCCeeeeecCcCCCceEEecCCCCHHHHHHHHHH
Confidence 1 35689999999887778999999999999999999999999999999999999 7777 55
Q ss_pred ---------------------C---CCCCCcceeeecCC--CCcccHHHHHHHHHHHHHHHHHhhcccCCCCCCCccccc
Q psy10062 263 ---------------------P---IWNYDGSSTYQSEM--REDNGIIEIEKAIDKLSKQHLRHIQAYDPKQGKDNERRL 316 (405)
Q Consensus 263 ---------------------p---~~nG~G~H~~~S~~--r~~~g~~~i~~ai~~l~~~h~~~i~~y~p~~~~~n~rRL 316 (405)
| +|||||||+|+|+. ++++|+..++++|++|+++|+++|.+| +.||||||
T Consensus 218 ~K~~vk~vA~~~G~~ATFmpKP~~gd~~GSG~H~H~Sl~~~~~~~g~~~~~~~i~gl~~~h~~~i~a~----~~nSYkRL 293 (370)
T 3fky_A 218 ARYFLHRVAEEFGIKISFHPKPLKGDWNGAGCHANVSTKEMRQPGGTKYIEQAIEKLSKRHAEHIKLY----GSDNDMRL 293 (370)
T ss_dssp HHHHHHHHHHTTTCEEECCSCSSSSSSCCCBEEEEEECHHHHSSSTHHHHHHHHHHHHHTHHHHHHSS----CTTGGGC-
T ss_pred HHHHHHHHHHHhCcEEEEcccccCCCCCcccceeeeccccccCCCCHHHHHHHHHHHHHHhHHHHHHH----ccchhhhc
Confidence 4 59999999999975 556788889999999999999999999 46999999
Q ss_pred cCCCCCCCccccccccCCcccEEEeCCCcchhccchhhhhhhhccCCcccccccccccCCceeEecCCCCCCChHHHHHH
Q psy10062 317 TGKHETSSIHDFSAGVANRGASIRIPRDCAEQKKGYLEDRRVANRGASIRIPRDCAEQKKGYLEDRRPSSNCDPYSVTEA 396 (405)
Q Consensus 317 ~g~~et~~~~~fS~g~~nR~asiRIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~E~Rrp~~~~nPYlv~~~ 396 (405)
++.|||+++..+|||++||+|+||||.. +...+++|||+|+|+++||||||++|
T Consensus 294 ~~~~eap~~~~~sWG~~NRsa~iRIp~~--------------------------~~~~~~~riE~R~pda~aNPYLa~Aa 347 (370)
T 3fky_A 294 TGRHETASMTAFSSGVANRGSSIRIPRS--------------------------VAKEGYGYFEDRRPASNIDPYLVTGI 347 (370)
T ss_dssp -------CCSCCCEEESCTTSSEEECHH--------------------------HHHHTCCCEEECCCBTTCCHHHHHHH
T ss_pred CCCccCCCcccceEecCCCceeEEecCC--------------------------CCCCCCCEEEECCCCCCCCHHHHHHH
Confidence 9999999999999999999999999987 34445789999999999999999999
Q ss_pred HHHHhhcC
Q psy10062 397 LIRTCVLN 404 (405)
Q Consensus 397 ll~t~~~~ 404 (405)
||+++++.
T Consensus 348 ilaagl~G 355 (370)
T 3fky_A 348 MCETVCGA 355 (370)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhcC
Confidence 99999864
No 2
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A
Probab=100.00 E-value=1.1e-61 Score=488.22 Aligned_cols=304 Identities=53% Similarity=0.847 Sum_probs=264.3
Q ss_pred CCcccchhhhhhhcCCCCCCCceEEEEEeeeCCCcccccccccccCcccCCCCCCCcchhhhhcCCccCCChhhhccccc
Q psy10062 50 PNAAMNKTVLDKYLALPVPADKIQATYIWIDGTGEGIRAKDRTLTGVVKNVSGRPDQVYYLIMSHGVLGNSPNAAMNKTV 129 (405)
Q Consensus 50 ~~~~~~~~~~~~y~~lP~~~~~~~a~yiwidg~g~~~R~k~rtl~~~~~~~~~~P~w~fd~~~~~~~~GSS~~qa~~~~~ 129 (405)
.++.++++++++|+.+++ .++++++|+|+|++|+.+|+|+.++....+..+++|.|.|| |||+.++.+. +
T Consensus 24 ~~~~~~~~~l~~~l~~~~-~~~~~v~~~~~D~~G~~~R~K~ip~~~~~~~~~~~p~~~~d--------gss~~~~~~~-~ 93 (384)
T 2ojw_A 24 ASSHLNKGIKQVYMSLPQ-GEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEWNFD--------GSSTLQSEGS-N 93 (384)
T ss_dssp GGGGSCHHHHHHHHTSCC-CSCEEEEEEEECTTSSCEEEEEEEESSCCSSGGGSCCEEEE--------GGGTTSSBTT-B
T ss_pred ccccCCHHHHHHHHhCCC-CCcEEEEEEEECCCCCeeeEEEEEHHHhhhhHhhCcccccc--------CcccccccCC-C
Confidence 347899999999999985 67999999999999999999999999888888889999999 9999887776 9
Q ss_pred ccccccCCCcccccceeEEeeCCCCCceeeecCC-----CCCCCCCCcchhhhhhhhhhhhHHHHHHHhhhhcceeee--
Q psy10062 130 LDKYLALPVPADKIQATYIWIDGTGEGIRAKCSQ-----LPLLRKGPYYCGVGANKVYARDIVEAHYRACLYAGIEIS-- 202 (405)
Q Consensus 130 SD~~L~~P~~~~~~~~~yi~~dp~G~~~~v~c~~-----~P~~~qgryyc~~g~~kv~~rdi~eahyrac~~~GIeqE-- 202 (405)
||++|+ |+. -++.||..+...+|+|+. +|.+.+.|+.|+.+++++.|.. +++|+|+|
T Consensus 94 sD~~l~-PDt------~~~~Pw~~~~~a~v~cd~~~~dG~P~~~~pR~iLkr~~~~~~g~~---------~~~G~E~EF~ 157 (384)
T 2ojw_A 94 SDMYLV-PAA------MFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRIMDMVSNQH---------PWFGMEQEYT 157 (384)
T ss_dssp CEEEEE-EEE------EEECTTTCTTCEEEEEEEECTTSCBCTTCCHHHHHHHHHHTGGGC---------CEEEEEEEEE
T ss_pred CcEEEE-eeE------EEECCCCCCCeEEEEEEEECCCCCCCCcCHHHHHHHHHHHHhCCE---------EEEEeeeEEE
Confidence 999999 864 113444456789999986 7999999999999999987544 89999999
Q ss_pred -----e----------cCCCCCeeeecCcchHHHHHHHHHHHHHHHHcCCeEEEecCCcCCCCcccccc----cccc-cC
Q psy10062 203 -----G----------TNAEGPYYCGVGANKVYARDIVEAHYRACLYAGIEISGTNAEVMPSQWEFQDI----AKCQ-DL 262 (405)
Q Consensus 203 -----G----------p~~QG~yyc~vG~~~~~gRdI~eahyrace~aGI~isg~~pE~mPGQwE~q~~----~~~~-~l 262 (405)
+ |.+||+|||.++.+..++++|+++++++|+++||+|+++|+|++||||||++. +++| ++
T Consensus 158 Lf~~~~~~~~~~~~g~p~~~g~y~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~ 237 (384)
T 2ojw_A 158 LMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHL 237 (384)
T ss_dssp EEC-CCSBTTCCTTSCCSCSSSCTTCCSTTTCCCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETTHHHHHH
T ss_pred EEccCCCcccccCCCccCCCCCCCcccccchHHHHHHHHHHHHHHHHCCCCeEeeecCCCCcceEEEcCCCcHHHHHHHH
Confidence 1 23578999988877778999999999999999999999999999999999999 7777 55
Q ss_pred -----------------------C---CCCCCcceeeecC--CCCcccHHHHHHHHHHHHHHHHHhhcccCCCCCCCccc
Q psy10062 263 -----------------------P---IWNYDGSSTYQSE--MREDNGIIEIEKAIDKLSKQHLRHIQAYDPKQGKDNER 314 (405)
Q Consensus 263 -----------------------p---~~nG~G~H~~~S~--~r~~~g~~~i~~ai~~l~~~h~~~i~~y~p~~~~~n~r 314 (405)
| +|||||||+|+|+ +++++|...++++|.+|+++|+++|.+|+|+.+.||||
T Consensus 238 ~~~k~~vk~vA~~~Gl~aTFmpKP~~~d~~GSG~H~H~Sl~~~~~~~g~n~f~~~~~gl~~~h~~~i~a~~p~~~~nsyk 317 (384)
T 2ojw_A 238 WVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNAR 317 (384)
T ss_dssp HHHHHHHHHHHHHHTCEEECCSCSSCSSSCCCBEEEEEECHHHHSTTTHHHHHHHHHHHHTCHHHHHHHSSTTTTTTGGG
T ss_pred HHHHHHHHHHHHHhCCEEEEeccccCCCCCCCeeeEEeehhhhcCCCchhHHHHHHHHHHHHHHHHheEeccCCCCCchh
Confidence 5 4999999999998 45556888899999999999999999999998999999
Q ss_pred cccCCCCCCCccccccccCCcccEEEeCCCcchhccchhhhhhhhccCCcccccccccccCCceeEecCCCCCCChHHHH
Q psy10062 315 RLTGKHETSSIHDFSAGVANRGASIRIPRDCAEQKKGYLEDRRVANRGASIRIPRDCAEQKKGYLEDRRPSSNCDPYSVT 394 (405)
Q Consensus 315 RL~g~~et~~~~~fS~g~~nR~asiRIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~E~Rrp~~~~nPYlv~ 394 (405)
||++.||++.+..+|||++||+|+||||.. ....+++|||+|+|+++||||||+
T Consensus 318 RL~pg~ea~~~~~~sWG~~NRsa~iRIp~~--------------------------~~~~~~~riE~R~pd~~aNPYLa~ 371 (384)
T 2ojw_A 318 RLTGFHETSNINDFSAGVANRSASIRIPRT--------------------------VGQEKKGYFEDRRPSANCDPFSVT 371 (384)
T ss_dssp TCC-----CCTTCCCEEETCTTSSEEECHH--------------------------HHHHTCSCEEECCCBTTCCHHHHH
T ss_pred hccCCcccCCCceEEeecccCCceEEeecC--------------------------CCCCCCCEEEEcCCCCCCCHHHHH
Confidence 999999999988999999999999999976 333457899999999999999999
Q ss_pred HHHHHHhhcCC
Q psy10062 395 EALIRTCVLNE 405 (405)
Q Consensus 395 ~~ll~t~~~~~ 405 (405)
+|||++++|+|
T Consensus 372 Aailaagl~~~ 382 (384)
T 2ojw_A 372 EALIRTCLLNE 382 (384)
T ss_dssp HHHHHHHTSCC
T ss_pred HHHHHHhcCCC
Confidence 99999999975
No 3
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A*
Probab=100.00 E-value=2.8e-60 Score=473.70 Aligned_cols=294 Identities=45% Similarity=0.701 Sum_probs=257.1
Q ss_pred hhhhhcCCCCCCCceEEEEEeeeCCCcccccccccccCcccCCCCCCCcchhhhhcCCccCCChhhhcccccccccccCC
Q psy10062 58 VLDKYLALPVPADKIQATYIWIDGTGEGIRAKDRTLTGVVKNVSGRPDQVYYLIMSHGVLGNSPNAAMNKTVLDKYLALP 137 (405)
Q Consensus 58 ~~~~y~~lP~~~~~~~a~yiwidg~g~~~R~k~rtl~~~~~~~~~~P~w~fd~~~~~~~~GSS~~qa~~~~~SD~~L~~P 137 (405)
++++ +.||...++++++|+|+|++|+.+|+|+.+++..++.++++|.|.|| |||++++.+. +||++|+ |
T Consensus 6 ~~~~-~~~~~~~~~~~v~~~~vD~~g~~~r~k~~~~~~~~~~~~~~~g~~fd--------gss~~~~~~~-~sD~~l~-P 74 (356)
T 2d3a_A 6 DLVN-LNLSDTTEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYD--------GSSTGQAPGE-DSEVILY-P 74 (356)
T ss_dssp HHHT-CCGGGTCSCEEEEEEEECTTSSCEEEEEEEESSCCCCGGGSCCEEEE--------GGGTTSSCSS-SCEEEEE-E
T ss_pred hhhc-cCCCCCCCeEEEEEEEEcCCCCcccceEEECCcchhhHhhcCcceec--------ccccccccCc-CCcEEEE-E
Confidence 5666 88854478999999999999999999999999988888889999999 9999888877 9999999 8
Q ss_pred CcccccceeEEeeCCCCCceeeecCC-----CCCCCCCCcchhhhhhhhhhhhHHHHHHHhhhhcceeee----e-----
Q psy10062 138 VPADKIQATYIWIDGTGEGIRAKCSQ-----LPLLRKGPYYCGVGANKVYARDIVEAHYRACLYAGIEIS----G----- 203 (405)
Q Consensus 138 ~~~~~~~~~yi~~dp~G~~~~v~c~~-----~P~~~qgryyc~~g~~kv~~rdi~eahyrac~~~GIeqE----G----- 203 (405)
+. -++.||..+...+|+|+. +|.+.+.|+.|+.+++++. +.+++ +++|+|+| .
T Consensus 75 Dt------~~~~P~~~~~~a~v~cd~~~~dG~P~~~~pR~iLkr~~~~~~-----~~g~~--~~~G~E~EF~lf~~~~~~ 141 (356)
T 2d3a_A 75 QA------IFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPE-----VAAEE--PWYGIEQEYTLLQKDTNW 141 (356)
T ss_dssp EE------EEECTTTCTTCEEEEEEEECTTSCBCTTCCHHHHHHHHHSHH-----HHHHC--CEEEEEEEEEEEETTTCC
T ss_pred EE------EEECCcCCCCceEEEEEEECCCCCCCCCCHHHHHHHHHHHHH-----hcCCe--eEEecceEEEEEecCCCc
Confidence 64 113444466789999986 7899999999999888875 46777 89999999 1
Q ss_pred ---------cCCCCCeeeecCcchHHHHHHHHHHHHHHHHcCCeEEEecCCcCCCCcccccc----cccc-cC-------
Q psy10062 204 ---------TNAEGPYYCGVGANKVYARDIVEAHYRACLYAGIEISGTNAEVMPSQWEFQDI----AKCQ-DL------- 262 (405)
Q Consensus 204 ---------p~~QG~yyc~vG~~~~~gRdI~eahyrace~aGI~isg~~pE~mPGQwE~q~~----~~~~-~l------- 262 (405)
|.+||+|||.++.+..++++|+++++++|+++||+++++|+|++||||||++. +++| ++
T Consensus 142 ~~~~~~~g~p~~~g~y~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~v 221 (356)
T 2d3a_A 142 PLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYIL 221 (356)
T ss_dssp BTTSCTTSBCSCSSSCTTCCSTTTCCCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCCCCcCcCcccchHHHHHHHHHHHHHHHHCCCCEEEeecCcCCCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 23678999988877778999999999999999999999999999999999999 7777 55
Q ss_pred ----------------C---CCCCCcceeeecC--CCCcccHHHHHHHHHHHHHHHHHhhcccCCCCCCCccccccCCCC
Q psy10062 263 ----------------P---IWNYDGSSTYQSE--MREDNGIIEIEKAIDKLSKQHLRHIQAYDPKQGKDNERRLTGKHE 321 (405)
Q Consensus 263 ----------------p---~~nG~G~H~~~S~--~r~~~g~~~i~~ai~~l~~~h~~~i~~y~p~~~~~n~rRL~g~~e 321 (405)
| +|||||||+|+|+ +++++|...+..++.+|+++|+++|.+| +.||||||++.||
T Consensus 222 k~vA~~~G~~aTFmpKP~~~d~~GSG~H~H~Sl~~~~~~~g~~~f~~~~~~l~l~h~~~l~a~----~~nSYkRL~pg~e 297 (356)
T 2d3a_A 222 ERITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAY----GEGNERRLTGRHE 297 (356)
T ss_dssp HHHHHHHTEEEECCSCSSCSSSCCCBEEEEEECTTTSSTTHHHHHHHHHHHHHHTHHHHHTTS----CTTHHHHCSSSSS
T ss_pred HHHHHHhCCEEEECCCccCCCCCCCcceEEechhhhccCCCHHHHHHHHHHHHHHHHHHHHhH----ccChHHHccCCcc
Confidence 4 7999999999997 5666788888889999999999999999 4589999999999
Q ss_pred CCCccccccccCCcccEEEeCCCcchhccchhhhhhhhccCCcccccccccccCCceeEecCCCCCCChHHHHHHHHHHh
Q psy10062 322 TSSIHDFSAGVANRGASIRIPRDCAEQKKGYLEDRRVANRGASIRIPRDCAEQKKGYLEDRRPSSNCDPYSVTEALIRTC 401 (405)
Q Consensus 322 t~~~~~fS~g~~nR~asiRIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~E~Rrp~~~~nPYlv~~~ll~t~ 401 (405)
++.+..+|||++||+|+||||.. +...+++|||+|+|+++||||||++|||+++
T Consensus 298 ap~~~~~swG~~NRsa~iRIp~~--------------------------~~~~~~~riE~R~pd~~aNPYLa~Aailaag 351 (356)
T 2d3a_A 298 TADINTFSWGVANRGASVRVGRE--------------------------TEQNGKGYFEDRRPASNMDPYVVTSMIAETT 351 (356)
T ss_dssp CCCTTCCCEESSCTTSSEECCHH--------------------------HHHTTCCCEEECCCBTTCCHHHHHHHHHHHH
T ss_pred CCCcceeEEeccCCeeeEEEccC--------------------------CCCCCCCEEEEcCCCCCCCHHHHHHHHHHHh
Confidence 99988899999999999999976 3445678999999999999999999999999
Q ss_pred hcCC
Q psy10062 402 VLNE 405 (405)
Q Consensus 402 ~~~~ 405 (405)
+|+|
T Consensus 352 l~~~ 355 (356)
T 2d3a_A 352 IVWK 355 (356)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 9975
No 4
>4hpp_A Probable glutamine synthetase; glutamine synthase homolog, glutamate, polyamine, ligase; HET: GLU; 2.50A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.8e-43 Score=361.76 Aligned_cols=276 Identities=17% Similarity=0.073 Sum_probs=210.2
Q ss_pred EEEEeeeCCCcccccccccccCcccCCCCCCCcchhhhhcCCccCC--Chhhhccc-------ccccccccCCCcccccc
Q psy10062 74 ATYIWIDGTGEGIRAKDRTLTGVVKNVSGRPDQVYYLIMSHGVLGN--SPNAAMNK-------TVLDKYLALPVPADKIQ 144 (405)
Q Consensus 74 a~yiwidg~g~~~R~k~rtl~~~~~~~~~~P~w~fd~~~~~~~~GS--S~~qa~~~-------~~SD~~L~~P~~~~~~~ 144 (405)
+...|+|-.| -+|+|+-......+..++ -..|+ || +....... .+||++|+ |+.
T Consensus 10 v~l~~~D~~G-~~r~k~vp~~~~~~~~~~--G~~f~--------~s~~~~~~~~~~~~~~~~~~~~D~~l~-PD~----- 72 (443)
T 4hpp_A 10 VSFVTTDLAG-ITRGRSLPLATLEEQLAS--GCGWV--------PANSSLTPQDLIDESSPWGSHGDLRLL-PDP----- 72 (443)
T ss_dssp EEEEEECTTS-CEEEEEEEGGGHHHHHTT--CEEEC--------GGGGGCCTTSCCCTTCSCSSSCCEEEE-ECG-----
T ss_pred EEEEEECCCC-CEEEEEEEHHHHHHHHhC--CcccC--------chhheeeccCccccccCCCCCCCEEEE-Ecc-----
Confidence 4455778777 367776554444332222 24444 21 11111111 25999999 998
Q ss_pred eeE-EeeCCC--C--CceeeecCC-----CCCCCCCCcchhhhhhhhhhhhHHHHHHHhhhhcceeee----e--cCCCC
Q psy10062 145 ATY-IWIDGT--G--EGIRAKCSQ-----LPLLRKGPYYCGVGANKVYARDIVEAHYRACLYAGIEIS----G--TNAEG 208 (405)
Q Consensus 145 ~~y-i~~dp~--G--~~~~v~c~~-----~P~~~qgryyc~~g~~kv~~rdi~eahyrac~~~GIeqE----G--p~~QG 208 (405)
+|+ +.||.. | ...+|+|+. +|.+.+.|+.|+.+.+++. +.+|+ +++|+|+| + |.+++
T Consensus 73 ~T~~~~Pw~~~~~~~~~a~v~cd~~~~dG~p~~~~pR~~L~r~~~~~~-----~~G~~--~~~g~E~EF~l~~~~p~~~~ 145 (443)
T 4hpp_A 73 NSRVRVEQGPDAAAPALDYLHGNLVETDGTPWPACPRSLLRAEVERYR-----DSGLQ--VIAAFEHEFSLLGLPGERPA 145 (443)
T ss_dssp GGCEEECCCSSTTSCCEEEEEEEEECTTSCBCTTCHHHHHHHHHHHHH-----HTTEE--EEEEEEEEEEEECCCSSSCC
T ss_pred cceEECCcccccCCCCeEEEEEEEECCCCCCCCCChHHHHHHHHHHHH-----HcCCe--EEEEeeeEEEEeccccCCCC
Confidence 666 888863 2 789999986 7888888988888887765 56777 99999999 3 66788
Q ss_pred CeeeecCcchHHHHHHHHHHHHHHHHcCCeEEEecCCcCCCCcccccc----cccc-cC---------------------
Q psy10062 209 PYYCGVGANKVYARDIVEAHYRACLYAGIEISGTNAEVMPSQWEFQDI----AKCQ-DL--------------------- 262 (405)
Q Consensus 209 ~yyc~vG~~~~~gRdI~eahyrace~aGI~isg~~pE~mPGQwE~q~~----~~~~-~l--------------------- 262 (405)
+||+..+ ...+++++++++++|+++||+++++|+|++||||||++. +++| ++
T Consensus 146 ~~y~~~~--~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~G~~aTFm 223 (443)
T 4hpp_A 146 AAFSLQA--QRAAGQFPGWLVSALAQAGTEPEMFLPEYGQRQYEVTCRPAQGVAAADRAVNVREVTREVARQMGLRTCFA 223 (443)
T ss_dssp CTTCHHH--HHHTTTHHHHHHHHHHHTTCCEEEEEECSSTTEEEEEECCEETHHHHHHHHHHHHHHHHHHHHHTCEEECS
T ss_pred ccCCCCc--ccchHHHHHHHHHHHHHCCCCeEEeecCCCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEe
Confidence 8766433 345788999999999999999999999999999999999 7777 55
Q ss_pred --C--CCCCCcceeeecCCCCc-----------ccH-HHHHHHHHHHHHHHHHhhccc-CCCCCCCccccccCCCCCCCc
Q psy10062 263 --P--IWNYDGSSTYQSEMRED-----------NGI-IEIEKAIDKLSKQHLRHIQAY-DPKQGKDNERRLTGKHETSSI 325 (405)
Q Consensus 263 --p--~~nG~G~H~~~S~~r~~-----------~g~-~~i~~ai~~l~~~h~~~i~~y-~p~~~~~n~rRL~g~~et~~~ 325 (405)
| ++||||||+|+|+.+++ +|+ +..+++|+||+ +|.++|.++ +|+. ||||||++.+++|..
T Consensus 224 pKP~~~~~GsG~H~h~Sl~~~~G~n~f~~~~~~~~lS~~~~~fiaGll-~h~~~l~a~~~P~~--NSYkRL~pg~~AP~~ 300 (443)
T 4hpp_A 224 PLPAPGAVTNGVHLHLSLQHADGSPLLYEPGRPNDLSELGEHWAAGVL-AHLPALCALTAPTA--ASYLRLKPHHWSAAY 300 (443)
T ss_dssp SSSSTTCCCCCEEEEEEEEETTSCBSSBCTTSGGGBCHHHHHHHHHHH-HHHHHHHHHHSCSG--GGHHHHSCSTTCCCB
T ss_pred cccCCCCCcccceeeeeeecCCCCccccCCCCccchhHHHHHHHHHHH-HHHHHHHHHhCCCC--cchhccCCCCcCCCc
Confidence 5 89999999999976532 122 34589999995 799999988 9966 999999988998854
Q ss_pred cccccccCCcccEEEeCCCcchhccchhhhhhhhccCCcccccccccc--cCCceeEecCCCCCCChHHHHHHHHHHhhc
Q psy10062 326 HDFSAGVANRGASIRIPRDCAEQKKGYLEDRRVANRGASIRIPRDCAE--QKKGYLEDRRPSSNCDPYSVTEALIRTCVL 403 (405)
Q Consensus 326 ~~fS~g~~nR~asiRIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~E~Rrp~~~~nPYlv~~~ll~t~~~ 403 (405)
.+||++||+++||||... .. ... .+++|||+|+|+++|||||+++|||++++.
T Consensus 301 --~~WG~~NRsa~iRip~~~-------------~~----------~~~~~~~~~riE~R~pd~~aNPYLa~AaiLaAGl~ 355 (443)
T 4hpp_A 301 --ACLGLRNREAALRICPVV-------------SV----------GGKPLGKQYNLEFRPMDATTCPHLAMAAVLIAGRL 355 (443)
T ss_dssp --CCEESSCTTSSEEEECCC-------------CS----------SSCCSSTTCEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred --ceeccCCCceeEEecccc-------------cc----------CCCccccccEEEEcCCCCCcCHHHHHHHHHHHHHH
Confidence 688999999999999761 00 011 367899999999999999999999998863
No 5
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP}
Probab=100.00 E-value=3.5e-42 Score=354.49 Aligned_cols=306 Identities=20% Similarity=0.162 Sum_probs=212.4
Q ss_pred cccCCCCcCC-CCCCCcceEEEee--eeecCCCCCCCCeEEEeccccCCCCcccchhhhhhhcCCCCCCCceEEEEEeee
Q psy10062 4 WNYDGSSTYQ-SEGSNSDTFLHPV--AIFKDPFRLGNNILMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATYIWID 80 (405)
Q Consensus 4 w~fDGSSt~q-a~g~nSd~~L~P~--ai~~DPfr~~~~ilv~c~v~~~~~~~~~~~~~~~~y~~lP~~~~~~~a~yiwid 80 (405)
+.|||||+.. ..+.+||++|+|+ ..+.+||+.+++..|+||++.. .++.|.+.+-
T Consensus 50 ~~fdgss~~g~~~~~~sD~~l~PD~~T~~~~Pw~~~~~a~v~cd~~~~-------------~~g~p~~~~p--------- 107 (473)
T 3ng0_A 50 IPFDGSSIRGWKAINESDMCMVPDPNTATIDPFCKEPTLSMICSIKEP-------------RTGEWYNRDP--------- 107 (473)
T ss_dssp EEEETTSSTTSCCGGGCEEEEEECGGGCEECTTCSSCEEEEEEEEECT-------------TTSSBCTTCH---------
T ss_pred CccccccccccccCCCCcEEEEeecCccEECCcCCCCcEEEEEEEeEC-------------CCCCCCCCCh---------
Confidence 6799999954 4556799999999 7799999988889999999831 1455555554
Q ss_pred CCCccccccccc-ccCc-----ccCCCCCCCcchhhhhcCCccCCChhhhcccccccccccCCCcccccceeEEeeCCCC
Q psy10062 81 GTGEGIRAKDRT-LTGV-----VKNVSGRPDQVYYLIMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATYIWIDGTG 154 (405)
Q Consensus 81 g~g~~~R~k~rt-l~~~-----~~~~~~~P~w~fd~~~~~~~~GSS~~qa~~~~~SD~~L~~P~~~~~~~~~yi~~dp~G 154 (405)
|.-.|. +... ...+...|+-+|+|+ +.+.+...........++....| ..|
T Consensus 108 ------R~iLkr~~~~~~~~G~~~~~~~g~E~EF~l~-~~~~~~~~~~~~~~~~~~~~~~~----------------~~~ 164 (473)
T 3ng0_A 108 ------RTIAAKAAEYLRGTGIADTVYFGPEAEFFLF-DDIRFGQTENSSYYFADSVEGRW----------------NTG 164 (473)
T ss_dssp ------HHHHHHHHHHHHHHTSCSEEEEEEEECEEEE-SEEEEEECSSCEEEEEECTTCGG----------------GTT
T ss_pred ------HHHHHHHHHHHHHcCCCcceEEEeeeEEEEE-eeccccccccccccccccccccc----------------ccc
Confidence 554432 2110 011222344455533 22111100000000000111111 011
Q ss_pred CceeeecCCCCCCCCCCcchhhhhhhhhhhhHHHHHHHhhhhcceeeee---cCC-CCCeeeecCc--chHHHHHHHHHH
Q psy10062 155 EGIRAKCSQLPLLRKGPYYCGVGANKVYARDIVEAHYRACLYAGIEISG---TNA-EGPYYCGVGA--NKVYARDIVEAH 228 (405)
Q Consensus 155 ~~~~v~c~~~P~~~qgryyc~~g~~kv~~rdi~eahyrac~~~GIeqEG---p~~-QG~yyc~vG~--~~~~gRdI~eah 228 (405)
...---..+..+.+++.|++....++ .++++++++++|..+||++|+ -.+ .|||++.+.. ...++|+++..+
T Consensus 165 ~~~~~~~~g~~~~~~~~y~~~~~~d~--~~~~~~~i~~~l~~~Gi~ve~~h~E~~~pGQ~Ei~~~~~~~l~aAD~~~~~k 242 (473)
T 3ng0_A 165 REEEGGNLGYKPGYKQGYFPVAPTDT--AQDIRTEMLLTMAAFGVPIEKHHHEVASGGQNELGIKFDKLVNSADNLMIYK 242 (473)
T ss_dssp CCCTTCCCCCCCCTTCCSSCCTTTCC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHH
T ss_pred cccccCCCCcccCCCccccccCccch--hHHHHHHHHHHHHHCCCCeEEeecCcCCCCceEEEccCCCHHHHHHHHHHHH
Confidence 10000000122445777877655554 479999999999999999995 223 4667766654 779999999999
Q ss_pred H---HHHHHcCCeEEEecCCcCCCCcccccccccccCCCCCCCcceeeecCCCCc---------cc-HHHHHHHHHHHHH
Q psy10062 229 Y---RACLYAGIEISGTNAEVMPSQWEFQDIAKCQDLPIWNYDGSSTYQSEMRED---------NG-IIEIEKAIDKLSK 295 (405)
Q Consensus 229 y---race~aGI~isg~~pE~mPGQwE~q~~~~~~~lp~~nG~G~H~~~S~~r~~---------~g-~~~i~~ai~~l~~ 295 (405)
+ ++|+++|+.+|+ ||||.+|+ ||||||+|+|+.++. .| .+...++|+||+
T Consensus 243 ~~vk~vA~~~G~~aTF-mpKP~~~~---------------~GSG~H~H~Sl~~~g~n~F~~~~~~~lS~~~~~fiaGlL- 305 (473)
T 3ng0_A 243 YVIKNVAKKYGKTVTF-MPKPIFND---------------NGSGMHVHQSLWKDGQPLFAGDKYAGFSQMGLWYIGGIL- 305 (473)
T ss_dssp HHHHHHHHHTTCEEEC-CSCSSTTS---------------CCCCEEEEEEEEETTEETTBSSSGGGBCHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCEEEE-cCcccCCC---------------CCCeeEEEEeeccCCccccCCCCccchhHHHHHHHHHHH-
Confidence 8 999999999998 99999999 999999999974321 12 245589999995
Q ss_pred HHHHhhccc-CCCCCCCccccccCCCCCCCccccccccCCcccEEEeCCCcchhccchhhhhhhhccCCccccccccccc
Q psy10062 296 QHLRHIQAY-DPKQGKDNERRLTGKHETSSIHDFSAGVANRGASIRIPRDCAEQKKGYLEDRRVANRGASIRIPRDCAEQ 374 (405)
Q Consensus 296 ~h~~~i~~y-~p~~~~~n~rRL~g~~et~~~~~fS~g~~nR~asiRIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (405)
+|+++|.+| +|+. ||||||++.+++|... +||.+||+++||||.. +...
T Consensus 306 ~h~~~l~a~~~Pt~--NSYkRL~pg~~AP~~~--~Wg~~NRsa~iRip~~--------------------------~~~~ 355 (473)
T 3ng0_A 306 KHAPALLAFTNPTT--NSYKRLVPGFEAPVNL--AYSQGNRSASVRIPLS--------------------------GGNP 355 (473)
T ss_dssp HHHHHHHHHHSCST--THHHHBBTTTBCCCBC--CEEESCTTSSEEECCC--------------------------SSCG
T ss_pred HHHHHHHHHhCCCc--chhhcccCCCcCccce--eeeccCCcCceeeecc--------------------------CCCC
Confidence 999999999 8855 9999999889988774 6778999999999975 3455
Q ss_pred CCceeEecCCCCCCChHHHHHHHHHHhhc
Q psy10062 375 KKGYLEDRRPSSNCDPYSVTEALIRTCVL 403 (405)
Q Consensus 375 ~~g~~E~Rrp~~~~nPYlv~~~ll~t~~~ 403 (405)
+++|||+|+|+++|||||+++|||++++.
T Consensus 356 ~~~RiE~R~pd~~aNPYLa~Aa~LaAGld 384 (473)
T 3ng0_A 356 KAKRLEFRCPDATSNPYLAFAAMLCAGID 384 (473)
T ss_dssp GGCCEEECSCCTTSCHHHHHHHHHHHHHH
T ss_pred CcceEEeecCCCCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999998763
No 6
>4acf_A Glutamine synthetase 1; ligase, nucleotide-binding, TRI-substituted IMID TAUT state, RV2220, GLNA1; HET: 46B P3S; 2.00A {Mycobacterium tuberculosis} PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 2bvc_A* 1hto_A* 1htq_A*
Probab=100.00 E-value=3.5e-42 Score=354.99 Aligned_cols=188 Identities=21% Similarity=0.220 Sum_probs=156.1
Q ss_pred CCCCcchhhhhhhhhhhhHHHHHHHhhhhcceeeee----cCCCCCeeeecCc--chHHHHHHHHHHH---HHHHHcCCe
Q psy10062 168 RKGPYYCGVGANKVYARDIVEAHYRACLYAGIEISG----TNAEGPYYCGVGA--NKVYARDIVEAHY---RACLYAGIE 238 (405)
Q Consensus 168 ~qgryyc~~g~~kv~~rdi~eahyrac~~~GIeqEG----p~~QG~yyc~vG~--~~~~gRdI~eahy---race~aGI~ 238 (405)
.+...||....... .++++++++++|..+||++|+ .++.|||++.+.. ...++|+++..++ ++|+++|+.
T Consensus 189 ~~~~~y~~~~~~~~-~~~~~~~i~~~l~~~Gi~ve~~h~E~gp~GQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~G~~ 267 (486)
T 4acf_A 189 RHKGGYFPVAPNDQ-YVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFNSLLHAADDMQLYKYIIKNTAWQNGKT 267 (486)
T ss_dssp CTTCCSSBCTTTSC-CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred ccCCccccCCcchh-HHHHHHHHHHHHHhCCceEEeeeeeeeccceeEEeccCcchhhhhhHHHHHHHHHHHHHHHcCCe
Confidence 34556776655444 489999999999999999995 2344667666654 7899999999998 999999999
Q ss_pred EEEecCCcCCCCcccccccccccCCCCCCCcceeeecCCCC-------cc---c-HHHHHHHHHHHHHHHHHhhccc-CC
Q psy10062 239 ISGTNAEVMPSQWEFQDIAKCQDLPIWNYDGSSTYQSEMRE-------DN---G-IIEIEKAIDKLSKQHLRHIQAY-DP 306 (405)
Q Consensus 239 isg~~pE~mPGQwE~q~~~~~~~lp~~nG~G~H~~~S~~r~-------~~---g-~~~i~~ai~~l~~~h~~~i~~y-~p 306 (405)
+|+ ||||.+|+ ||||||+|+|+.++ ++ | .+..+++|+||+ +|.++|.++ +|
T Consensus 268 aTF-mpKP~~~~---------------~GsG~H~H~Sl~~~g~n~f~~~~~~~~lS~~~~~fiaGll-~h~~~l~a~~~P 330 (486)
T 4acf_A 268 VTF-MPKPLFGD---------------NGSGMHCHQSLWKDGAPLMYDETGYAGLSDTARHYIGGLL-HHAPSLLAFTNP 330 (486)
T ss_dssp EEC-CSCSSTTS---------------CCCCEEEEEEEEETTEESSBCTTSGGGBCHHHHHHHHHHH-HHHHHHHHHHSC
T ss_pred EEE-eeccccCC---------------CcccceeeeeeccCCCccccccccccccchHHHHHHHHHH-HhhhcceeeecC
Confidence 998 99999999 99999999996432 12 2 255689999996 788888877 89
Q ss_pred CCCCCccccccCCCCCCCccccccccCCcccEEEeCCCcchhccchhhhhhhhccCCcccccccccccCCceeEecCCCC
Q psy10062 307 KQGKDNERRLTGKHETSSIHDFSAGVANRGASIRIPRDCAEQKKGYLEDRRVANRGASIRIPRDCAEQKKGYLEDRRPSS 386 (405)
Q Consensus 307 ~~~~~n~rRL~g~~et~~~~~fS~g~~nR~asiRIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~E~Rrp~~ 386 (405)
+. ||||||++.+++|+. .+||+.||+++||||.. ...++++|||+|+|++
T Consensus 331 tv--NSYkRl~pg~~AP~~--~~wg~~NRsa~iRip~~--------------------------~~~~~~~riE~R~pd~ 380 (486)
T 4acf_A 331 TV--NSYKRLVPGYEAPIN--LVYSQRNRSACVRIPIT--------------------------GSNPKAKRLEFRSPDS 380 (486)
T ss_dssp ST--THHHHSSTTSSSCSB--SCEEETCTTSSEEECCC--------------------------TTCTTTCCEEECCCCS
T ss_pred CC--cchhccCCCCcCCce--eEEeccCCCcceEeccc--------------------------CCCCccceeeecCCCC
Confidence 55 999999988998875 57889999999999976 4566788999999999
Q ss_pred CCChHHHHHHHHHHhhc
Q psy10062 387 NCDPYSVTEALIRTCVL 403 (405)
Q Consensus 387 ~~nPYlv~~~ll~t~~~ 403 (405)
+|||||++||||++++.
T Consensus 381 ~aNPYLalAailaAGld 397 (486)
T 4acf_A 381 SGNPYLAFSAMLMAGLD 397 (486)
T ss_dssp SSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998763
No 7
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A
Probab=100.00 E-value=5.5e-41 Score=344.90 Aligned_cols=305 Identities=20% Similarity=0.165 Sum_probs=210.9
Q ss_pred CcccCCCCc-CCCCCCCcceEEEee--eeecCCCCCCCCeEEEeccccCCCCcccchhhhhhhcCCCCCCCceEEEEEee
Q psy10062 3 IWNYDGSST-YQSEGSNSDTFLHPV--AIFKDPFRLGNNILMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATYIWI 79 (405)
Q Consensus 3 ~w~fDGSSt-~qa~g~nSd~~L~P~--ai~~DPfr~~~~ilv~c~v~~~~~~~~~~~~~~~~y~~lP~~~~~~~a~yiwi 79 (405)
-|.|||||+ +++...+|||+|+|+ ..+.+||+.+++..|+||++. .+.+.|.+.+-
T Consensus 46 g~~fdgss~~g~~~~~~sD~~l~PD~~T~~~~Pw~~~~~~~v~~d~~~-------------~~~G~p~~~~p-------- 104 (468)
T 1f52_A 46 GKMFDGSSIGGWKGINESDMVLMPDASTAVIDPFFADSTLIIRCDILE-------------PGTLQGYDRDP-------- 104 (468)
T ss_dssp CEEEEGGGSTTSCCSSCCEEEEEECGGGCEECSSCSSCEEEEEEEEEC-------------TTTCCCCTTCH--------
T ss_pred ceeeccccccccccCCCCCEEEEEecCCcEEccccCCCceEEEEEEEe-------------CCCCCcCCCCH--------
Confidence 489999998 566778899999999 579999997788999999984 22455554444
Q ss_pred eCCCccccccccc-ccCc-----ccCCCCCCCcchhhhhcCCccCCChhhhcccccccccccCCCcccccceeEEeeCCC
Q psy10062 80 DGTGEGIRAKDRT-LTGV-----VKNVSGRPDQVYYLIMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATYIWIDGT 153 (405)
Q Consensus 80 dg~g~~~R~k~rt-l~~~-----~~~~~~~P~w~fd~~~~~~~~GSS~~qa~~~~~SD~~L~~P~~~~~~~~~yi~~dp~ 153 (405)
|+-.+. +... .+.+.-.|+-+|+|+- .+.+...........+|+...| ..
T Consensus 105 -------R~ilk~~~~~l~~~G~~~~~~~G~E~EFfl~~-~~~~~~~~~~~~~~~~~~~~~~----------------~~ 160 (468)
T 1f52_A 105 -------RSIAKRAEDYLRATGIADTVLFGPEPEFFLFD-DIRFGASISGSHVAIDDIEGAW----------------NS 160 (468)
T ss_dssp -------HHHHHHHHHHHHHHTSCSEEEEEEEEEEEEES-EEEEEEETTEEEEEEECTTCGG----------------GG
T ss_pred -------HHHHHHHHHHHHHcCCCcceEEEeeeEEEEEe-ccccccCCcccccccccccccc----------------CC
Confidence 544432 1110 0012222344444321 1111000000000000000000 00
Q ss_pred CCceeeecCCCCCCCCCCcchhhhhhhhhhhhHHHHHHHhhhhcceeeee----cCCCCCeeeecC--cchHHHHHHHHH
Q psy10062 154 GEGIRAKCSQLPLLRKGPYYCGVGANKVYARDIVEAHYRACLYAGIEISG----TNAEGPYYCGVG--ANKVYARDIVEA 227 (405)
Q Consensus 154 G~~~~v~c~~~P~~~qgryyc~~g~~kv~~rdi~eahyrac~~~GIeqEG----p~~QG~yyc~vG--~~~~~gRdI~ea 227 (405)
|....---....+..++.||+....+. .++++++++++|..+||++|+ .++-|||++.+. +...++|+++..
T Consensus 161 ~~~~~~~~~g~~~~~~~~Y~~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~h~E~apggQ~Ei~~~~~~~l~aAD~~~~~ 238 (468)
T 1f52_A 161 STKYEGGNKGHRPGVKGGYFPVPPVDS--AQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIY 238 (468)
T ss_dssp GCCCTTCCCCCCCCTTCCSSBCTTSSC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHH
T ss_pred CccccccCCCCCCCCCCCccCCCcccc--HHHHHHHHHHHHHHCCCCeEEeecCCCCceeEEEeccCCCHHHHHHHHHHH
Confidence 000000000123556788888777654 589999999999999999995 222236666655 478999999999
Q ss_pred HH---HHHHHcCCeEEEecCCcCCCCcccccccccccCCCCCCCcceeeecCCCCc---------cc-HHHHHHHHHHHH
Q psy10062 228 HY---RACLYAGIEISGTNAEVMPSQWEFQDIAKCQDLPIWNYDGSSTYQSEMRED---------NG-IIEIEKAIDKLS 294 (405)
Q Consensus 228 hy---race~aGI~isg~~pE~mPGQwE~q~~~~~~~lp~~nG~G~H~~~S~~r~~---------~g-~~~i~~ai~~l~ 294 (405)
++ ++|+++|+.+++ ||||..|+ ||||||+|+|+.++. .+ .....++|+||+
T Consensus 239 k~~vk~vA~~hGl~atF-mpKP~~g~---------------~GSG~H~h~Sl~~~g~Nlf~~~~~~~ls~~~~~~iaGll 302 (468)
T 1f52_A 239 KYVVHNVAHRFGKTATF-MPKPMFGD---------------NGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGVI 302 (468)
T ss_dssp HHHHHHHHHHTTCEEEC-CSCSSTTS---------------CCCCEEEEEEEEETTEETTBCSSGGGBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEE-eCCCCCCC---------------CCCCcceeeccccCCCcccCCCCcchHHHHHHHHHHHHH
Confidence 98 999999999998 99999999 999999999975421 12 245688999995
Q ss_pred HHHHHhhccc-CCCCCCCccccccCCCCCCCccccccccCCcccEEEeCCCcchhccchhhhhhhhccCCcccccccccc
Q psy10062 295 KQHLRHIQAY-DPKQGKDNERRLTGKHETSSIHDFSAGVANRGASIRIPRDCAEQKKGYLEDRRVANRGASIRIPRDCAE 373 (405)
Q Consensus 295 ~~h~~~i~~y-~p~~~~~n~rRL~g~~et~~~~~fS~g~~nR~asiRIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (405)
+|+++|.+| +|+. ||||||++.+|+|... +||..||+++||||.. ..
T Consensus 303 -~h~~~l~a~~ap~~--NSYkRL~pg~eAP~~i--~wg~~NRsa~iRiP~~---------------------------~~ 350 (468)
T 1f52_A 303 -KHAKAINALANPTT--NSYKRLVPGYEAPVML--AYSARNRSASIRIPVV---------------------------AS 350 (468)
T ss_dssp -HTHHHHHHHHSCSG--GGGGTSSSCSSCCCEE--EEESSCTTEEEECCCC---------------------------SC
T ss_pred -HHHHHhHhHhcCCc--cchhccCCCCcCcCcc--eeccCCcccceeeCCC---------------------------CC
Confidence 999999999 8855 9999999999999874 6778999999999963 12
Q ss_pred cCCceeEecCCCCCCChHHHHHHHHHHhh
Q psy10062 374 QKKGYLEDRRPSSNCDPYSVTEALIRTCV 402 (405)
Q Consensus 374 ~~~g~~E~Rrp~~~~nPYlv~~~ll~t~~ 402 (405)
++.+|||+|.|+++||||||++|||++++
T Consensus 351 ~~~~riE~R~pd~~aNPYLalaailaagL 379 (468)
T 1f52_A 351 PKARRIEVRFPDPAANPYLCFAALLMAGL 379 (468)
T ss_dssp GGGCCEEECCCCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 35679999999999999999999999876
No 8
>3qaj_A Glutamine synthetase; AMP-PCP, ACP, ligase; HET: GLU ADP RGP CIT AMP; 3.05A {Bacillus subtilis}
Probab=100.00 E-value=1.8e-41 Score=347.06 Aligned_cols=269 Identities=22% Similarity=0.251 Sum_probs=207.9
Q ss_pred EEEEeeeCCCcccccccccccCcccCCCCCCCcchhhhhcCCccCCChhhhcccccccccccCCCcccccceeE-EeeCC
Q psy10062 74 ATYIWIDGTGEGIRAKDRTLTGVVKNVSGRPDQVYYLIMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATY-IWIDG 152 (405)
Q Consensus 74 a~yiwidg~g~~~R~k~rtl~~~~~~~~~~P~w~fd~~~~~~~~GSS~~qa~~~~~SD~~L~~P~~~~~~~~~y-i~~dp 152 (405)
+...|+|-.| -+|+|+-......+..++ -..|| |||+.+.....+||++|+ |+. +|+ +.||.
T Consensus 21 v~l~~~D~~G-~~r~k~ip~~~~~~~~~~--G~~fd--------gssi~g~~~~~~~D~~l~-PD~-----~T~~~~Pw~ 83 (444)
T 3qaj_A 21 IRLQFTDILG-TIKNVEIPVSQLGKALDN--KVMFD--------GSSIEGFVRIEESDMYLY-PDL-----NTFVIFPWT 83 (444)
T ss_dssp EEEEEECSSS-CEEEEEEEGGGHHHHHTT--CCEEE--------TTTSTTSSCTTCCEEECC-BCG-----GGCEEEHHH
T ss_pred EEEEEECCCC-CEEEEEEeHHHHHHHHhC--Ccccc--------CccccCccCCCCCCEEEE-Eec-----CceEECccc
Confidence 4556778888 367766544433333232 25688 999866655558999999 998 666 78885
Q ss_pred --CCCceeeecCC-----CCCCCCCCcchhhhhhhhhhhhHHHHHHHhhhhcceeee---------e-----cCCCCCee
Q psy10062 153 --TGEGIRAKCSQ-----LPLLRKGPYYCGVGANKVYARDIVEAHYRACLYAGIEIS---------G-----TNAEGPYY 211 (405)
Q Consensus 153 --~G~~~~v~c~~-----~P~~~qgryyc~~g~~kv~~rdi~eahyrac~~~GIeqE---------G-----p~~QG~yy 211 (405)
.|...+|+|+. +|.+.+.|+.|+.+.+++..+ +|.. +++|+|+| | +..+++|
T Consensus 84 ~~~~~~a~v~cd~~~~dG~p~~~~pR~iLkr~~~~~~~~-----G~~~-~~~g~E~EF~l~~~~~~g~~~~~~~~~~~y- 156 (444)
T 3qaj_A 84 AEKGKVARFICDIYNPDGTPFEGDPRNNLKRILKEMEDL-----GFSD-FNLGPEPEFFLFKLDEKGEPTLELNDKGGY- 156 (444)
T ss_dssp HHHHCEEEEEBCCBCTTSCBCSSCHHHHHHHHHHHHHTT-----TCCE-EEEEEEECEEEEEECSSSCEEEEESCCCCT-
T ss_pred cCCCCeEEEEEEEECCCCCCCCCChHHHHHHHHHHHHHc-----CCCe-eeEEeceEEEEEecCCCCCCCCcCcCCCCc-
Confidence 34789999996 788888899998888887643 3311 46999999 2 3456774
Q ss_pred eecCc---chHHHHHHHHHHHHHHHHcCCeEEEecCCcCCCCcccccc----cccc-cC---------------------
Q psy10062 212 CGVGA---NKVYARDIVEAHYRACLYAGIEISGTNAEVMPSQWEFQDI----AKCQ-DL--------------------- 262 (405)
Q Consensus 212 c~vG~---~~~~gRdI~eahyrace~aGI~isg~~pE~mPGQwE~q~~----~~~~-~l--------------------- 262 (405)
|++.+ ...+.|+|++ +|+++||+++++|+|++||||||++. +++| ++
T Consensus 157 ~~~~~~d~~~~~~~~i~~----~l~~~Gi~ve~~h~E~~pGQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~G~~aTFm 232 (444)
T 3qaj_A 157 FDLAPTDLGENCRRDIVL----ELEEMGFEIEASHHEVAPGQHEIDFKYAGAVRSCDDIQTFKLVVKTIARKHGLHATFM 232 (444)
T ss_dssp TCCTTTSCCTTHHHHHHH----HHHTTTCCEEEEEECSSTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTEEEECC
T ss_pred cccCCCcchHHHHHHHHH----HHHHCCCCeEEeEcCcCCCcEEEecCCChHHHHHHHHHHHHHHHHHHHHHcCCEEEEc
Confidence 46554 4456666665 89999999999999999999999999 7777 54
Q ss_pred --C--CCCCCcceeeecCCCCc-------c---c-HHHHHHHHHHHHHHHHHhhccc-CCCCCCCccccccCCCCCCCcc
Q psy10062 263 --P--IWNYDGSSTYQSEMRED-------N---G-IIEIEKAIDKLSKQHLRHIQAY-DPKQGKDNERRLTGKHETSSIH 326 (405)
Q Consensus 263 --p--~~nG~G~H~~~S~~r~~-------~---g-~~~i~~ai~~l~~~h~~~i~~y-~p~~~~~n~rRL~g~~et~~~~ 326 (405)
| +.||||||+|+|+++++ + | .+..+++|+||+ +|.++|.++ +|+. ||||||++.+++|..
T Consensus 233 pKP~~~~~GsG~H~H~Sl~~~g~n~f~~~~~~~~lS~~~~~fiaGlL-~h~~~l~a~~~Ptv--NSYkRl~pg~~AP~~- 308 (444)
T 3qaj_A 233 PKPLFGVNGSGMHCNLSLFKNGVNAFFDENADLQLSETAKHFIAGIV-KHATSFTAVTNPTV--NSYKRLVPGYEAPCY- 308 (444)
T ss_dssp SCSSTTSCCCCEEEEEEEEETTEETTCCTTSSSSCCHHHHHHHHHHH-HTHHHHHHHHSCSS--THHHHSCTTSSSSCB-
T ss_pred CCcCCCCCCCcceeeeccccCCCcccCCCCcccchHHHHHHHHHHHH-HHHHHHHHHHCCCC--cccccCCCCCcCCCc-
Confidence 5 88999999999986532 1 1 245589999995 888888887 9965 999999988888876
Q ss_pred ccccccCCcccEEEeCCCcchhccchhhhhhhhccCCcccccccccccCCceeEecCCCCCCChHHHHHHHHHHhhc
Q psy10062 327 DFSAGVANRGASIRIPRDCAEQKKGYLEDRRVANRGASIRIPRDCAEQKKGYLEDRRPSSNCDPYSVTEALIRTCVL 403 (405)
Q Consensus 327 ~fS~g~~nR~asiRIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~E~Rrp~~~~nPYlv~~~ll~t~~~ 403 (405)
.+||..||+++||||.. ..+++|||+|.|+++|||||+++|||++++.
T Consensus 309 -~~Wg~~NRsa~iRip~~----------------------------~~~~~RiE~R~pd~~aNPYLa~Aa~LaAGld 356 (444)
T 3qaj_A 309 -VAWSAQNRSPLIRIPAS----------------------------RGISTRVEVRSVDPAANPYLALSVLLAAGLD 356 (444)
T ss_dssp -CCEESSCSSSSEECCSC----------------------------CGGGCCEEECCCCTTSCHHHHHHHHHHHHHH
T ss_pred -ceeecCCCcceEeeccC----------------------------CCCCceEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 47889999999999964 1346799999999999999999999998863
No 9
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus}
Probab=100.00 E-value=7.9e-41 Score=340.06 Aligned_cols=271 Identities=14% Similarity=0.075 Sum_probs=212.7
Q ss_pred eEEEEEeeeCCCcccccccccccCcccCCCCCCCcchhhhhcCCccCCC-hhhh--cccccccccccCCCcccccceeE-
Q psy10062 72 IQATYIWIDGTGEGIRAKDRTLTGVVKNVSGRPDQVYYLIMSHGVLGNS-PNAA--MNKTVLDKYLALPVPADKIQATY- 147 (405)
Q Consensus 72 ~~a~yiwidg~g~~~R~k~rtl~~~~~~~~~~P~w~fd~~~~~~~~GSS-~~qa--~~~~~SD~~L~~P~~~~~~~~~y- 147 (405)
-.+.++|+|.+| .+|+|+.+.... +.+.+ .|.|| ||| +... .+. +||++|+ |+. +|+
T Consensus 15 ~~v~~~~~D~~G-~~r~k~ip~~~~-~~~~~--g~~~~--------gs~~~~~~~~~~~-~sD~~l~-PD~-----~T~~ 75 (421)
T 2j9i_A 15 AFVRFEATDAAG-ASRSKSIPAQFF-EKVIH--ARGYL--------EDGEVNAGAAGAA-ASDIVLM-PEL-----STAA 75 (421)
T ss_dssp SEEEEEEECSSS-CEEEEEEEGGGC-CTTHH--HHCEE--------ECGGGSTTTCCTT-CCCEEEE-ECS-----SCCE
T ss_pred CEEEEEEECCCC-CEEEEEEEHHHH-HHhhc--CCeee--------cccCcccccccCC-CCCEEEE-Eec-----CceE
Confidence 368899999999 689998877665 33333 37888 765 3222 333 6999999 998 665
Q ss_pred EeeCCCCCceeeecC-CCCCCCCCCcchhhhhhhhhhhhHHHHHH--Hhhhhcceeeee----cC---CCCCeeeecCcc
Q psy10062 148 IWIDGTGEGIRAKCS-QLPLLRKGPYYCGVGANKVYARDIVEAHY--RACLYAGIEISG----TN---AEGPYYCGVGAN 217 (405)
Q Consensus 148 i~~dp~G~~~~v~c~-~~P~~~qgryyc~~g~~kv~~rdi~eahy--rac~~~GIeqEG----p~---~QG~yyc~vG~~ 217 (405)
+.||......+|+|+ .+|.+.+.|+.|+.+.+++. +.+| + +++|+|+|= .. .-.++||++++.
T Consensus 76 ~~Pw~~~~~a~v~cddG~P~~~~pR~iLk~~~~~~~-----~~G~~d~--~~~g~E~EF~l~~~~~~~~~~p~y~~~~~~ 148 (421)
T 2j9i_A 76 VAAAAAAATAAVICDGGAAAAASPRYIARAALAQLQ-----AAGAAAG--LLSAFIADFCIFGVPEVINSKTISFPASTT 148 (421)
T ss_dssp ECTTSSSSEEEEEEEEESSCSCCHHHHHHHHHHHHH-----HTTSCSE--ECCEECCCCEEESCCEEEECSSCEEEECCC
T ss_pred EcCcCCCCeEEEEcCCCCCCCCChHHHHHHHHHHHH-----hcCCccC--ceEEeeeEEEEEecCCCCCCCCCcCCCCcc
Confidence 778844468999996 48999999999988888775 4566 6 899999991 11 114678888873
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEecCCcCCCCcccccc-----cccc-cC-----------------------CCCCCC
Q psy10062 218 KVYARDIVEAHYRACLYAGIEISGTNAEVMPSQWEFQDI-----AKCQ-DL-----------------------PIWNYD 268 (405)
Q Consensus 218 ~~~gRdI~eahyrace~aGI~isg~~pE~mPGQwE~q~~-----~~~~-~l-----------------------p~~nG~ 268 (405)
..+++++++++++|+ +||+++++|+|++||||||++. +++| ++ |+||||
T Consensus 149 -~~~~~~~~~i~~~l~-~Gi~ve~~h~E~apgQ~Ei~~~~~~~~l~aaD~~~~~k~~vk~vA~~~G~~atFmpKP~~~GS 226 (421)
T 2j9i_A 149 -AAAADQPQEAAAGGA-AGAAAGAAGGAAAAGAAEICFLPEAAGAAAADNAFTLRTGLQEVARRYNAIASAAAAAAAAAA 226 (421)
T ss_dssp -TTCTTGGGSCCTTCC-CSCCCBTTBCCCCCSSCCTTTTTTTCCSCTTTHHHHHHHHHHHHHHTTTCEEECCTTSSTTSC
T ss_pred -cchhHHHHHHHHHHh-CCCCeEEeecCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCCCCC
Confidence 245667788888999 9999999999999999999995 6666 44 599999
Q ss_pred cceeeecCCCCc-c-----------c-HHHHHHHHHHHHHHHHHhhccc-CCCCCCCccccccCCCCCCCccccccccCC
Q psy10062 269 GSSTYQSEMRED-N-----------G-IIEIEKAIDKLSKQHLRHIQAY-DPKQGKDNERRLTGKHETSSIHDFSAGVAN 334 (405)
Q Consensus 269 G~H~~~S~~r~~-~-----------g-~~~i~~ai~~l~~~h~~~i~~y-~p~~~~~n~rRL~g~~et~~~~~fS~g~~n 334 (405)
|| +|+|+.+.+ + | .+..+++|+||+ +|.++|.++ +|+. |+|||+ .+++..+..++||++|
T Consensus 227 G~-~h~Sl~~~~~~G~nlf~~~~~~~ls~~~~~~iaGil-~h~~~l~a~~~p~~--NSYk~~--~~ap~~~~~~~wG~~N 300 (421)
T 2j9i_A 227 GA-GSHSIWDVGAAGTNAFAGASGARATLTGAKWLAGLL-AAAAAAAAAAAAAA--AAAAAA--AAGAAAAAATAWGAAA 300 (421)
T ss_dssp CC-BCCEEECEEETTEESSCSSSGGGCCHHHHHHHHHHH-HHHHHHHHHHTCSH--HHHHHT--SSSTTCCCEEEEESSC
T ss_pred ce-EEEeccccCCCCceeecCCCCccccHHHHHHHHHHH-HHHHHHHHHhCCCc--cccCCC--CCCCcCeeeeeeecCC
Confidence 99 999976421 1 1 355689999995 899999888 9965 999964 5677778888999999
Q ss_pred cccEEEeCCCcchhccchhhhhhhhccCCcccccccccccCCceeEecCCCCCCChHHHHHHHHHHhhc
Q psy10062 335 RGASIRIPRDCAEQKKGYLEDRRVANRGASIRIPRDCAEQKKGYLEDRRPSSNCDPYSVTEALIRTCVL 403 (405)
Q Consensus 335 R~asiRIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~E~Rrp~~~~nPYlv~~~ll~t~~~ 403 (405)
|+++||||.. ..++++|||+|+|+++||||||++|||++++.
T Consensus 301 Rsa~iRip~~---------------------------~~~~~~riE~R~pd~~aNPYLa~aailaagl~ 342 (421)
T 2j9i_A 301 AACALNIAAA---------------------------AAAKGAQIENKAGAAAANPYLVLAATVAAGLD 342 (421)
T ss_dssp TTEEEEEECC---------------------------SSGGGCEEEECSCBTTSCHHHHHHHHHHHHHH
T ss_pred Cccceeeccc---------------------------CCCCCCEEEEcCCCCCCChHHHHHHHHHHHhh
Confidence 9999999964 12357799999999999999999999998863
No 10
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis}
Probab=99.90 E-value=1.8e-24 Score=231.37 Aligned_cols=263 Identities=17% Similarity=0.141 Sum_probs=145.0
Q ss_pred CCCh--hhhcccccccccccCCCcccccceeEEeeCCCCCceeeecCC-----CCCCCCCCc-chhhhhhhhhhhhHHHH
Q psy10062 118 GNSP--NAAMNKTVLDKYLALPVPADKIQATYIWIDGTGEGIRAKCSQ-----LPLLRKGPY-YCGVGANKVYARDIVEA 189 (405)
Q Consensus 118 GSS~--~qa~~~~~SD~~L~~P~~~~~~~~~yi~~dp~G~~~~v~c~~-----~P~~~qgry-yc~~g~~kv~~rdi~ea 189 (405)
|||. ++.-..+.++.|+. |++ ++.-|.|| .-+.+.|.- +|.....|+ .|-....+..-+-+.+.
T Consensus 130 gSS~p~gG~r~t~earg~~~-~D~-----ts~afi~~--~TL~IP~~f~s~~Ge~ld~ktPL~rsPR~ilk~A~~~Lk~~ 201 (729)
T 3o6x_A 130 ASSFPNGGIRNTFEARGYTA-WDG-----SSPAFVVD--TTLCIPTIFISYTGEALDYKTPLLKALAAVDKAATEVCQLF 201 (729)
T ss_dssp ------------------CC-BCS-----SSCCEEET--TEEECCBCCC----CCCBSHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cccCCCccchhhhhccCcee-cCC-----CCCeEEeC--CeEEEEEEEEeCCCCcCCCCCchhhCHHHHHHHHHHHHHHc
Confidence 8888 77777778999988 877 44444544 123332221 343333444 24444444333333334
Q ss_pred HHH---hhhhcceeee------------------e------cCCCCC----eeeecCcchHHHHHHHHHHHHHHHHcCCe
Q psy10062 190 HYR---ACLYAGIEIS------------------G------TNAEGP----YYCGVGANKVYARDIVEAHYRACLYAGIE 238 (405)
Q Consensus 190 hyr---ac~~~GIeqE------------------G------p~~QG~----yyc~vG~~~~~gRdI~eahyrace~aGI~ 238 (405)
++. .-+++|.||| | ..+.|+ -|+++.++ -..+++.+..+.|+++||+
T Consensus 202 G~d~~~v~~~~G~E~EFFLfd~~~~~~r~dl~~tGrtl~G~~P~kgq~l~d~Yf~~~pd--~~~~~~~di~~~L~~~GI~ 279 (729)
T 3o6x_A 202 DKNITRVFTNLGWEQEYFLVDTSLYNARPDLRLTGRTLMGHSSAKDQQLEDHYFGSIPP--RVTAFMKELEIECHKLGIP 279 (729)
T ss_dssp SSCCCCEEEEEEEEECEEEEEHHHHHSCTTHHHHSSCSCCCC--------------CCH--HHHHHHHHHHHHHHHHTCC
T ss_pred CCCCccceEEEEeccEEEEEecchhccCcccccccccccCCCCCCCCCCCCccCCCCch--hHHHHHHHHHHHHHHCCCC
Confidence 430 0168999999 1 113331 26676652 3355666666799999999
Q ss_pred EEEecCCcCCCCcccccc----cccc-cC-----------------------C--CCCCCcceeeecCCCCc--------
Q psy10062 239 ISGTNAEVMPSQWEFQDI----AKCQ-DL-----------------------P--IWNYDGSSTYQSEMRED-------- 280 (405)
Q Consensus 239 isg~~pE~mPGQwE~q~~----~~~~-~l-----------------------p--~~nG~G~H~~~S~~r~~-------- 280 (405)
+++.|+|++||||||++. +.++ ++ | ++||||||+|+|+.+++
T Consensus 280 ve~~H~EvaPGQ~EI~~~~~~al~AAD~~~l~K~vvK~VA~~hGl~ATFMPKP~~g~nGSG~HvH~SL~~~~G~NLF~~~ 359 (729)
T 3o6x_A 280 VKTRHNEVAPNQFELAPIFENCNLANDHNQLVMDLMKRIARKHHFAVLFHEKPYNGVNGSGKHNNWSLCTDTGINLFAPG 359 (729)
T ss_dssp EEEECBCSSTTEECCEECCEEHHHHHHHHHHHHHHHHHHHHHTTEEEECSSCSSTTSCCCBEEEEEEEEETTCCCSSCCC
T ss_pred eEEeecCCCCCceEeccCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEecccCCCCCCCcceeeccccCCCCCcCCCCC
Confidence 999999999999999999 6666 44 5 89999999999975431
Q ss_pred cc-------HHHHHHHHHHHHHHHHHhhccc-CCCCCCCccccccCCCCCCCc-cccccccCCcccEEEeC---CCc---
Q psy10062 281 NG-------IIEIEKAIDKLSKQHLRHIQAY-DPKQGKDNERRLTGKHETSSI-HDFSAGVANRGASIRIP---RDC--- 345 (405)
Q Consensus 281 ~g-------~~~i~~ai~~l~~~h~~~i~~y-~p~~~~~n~rRL~g~~et~~~-~~fS~g~~nR~asiRIP---~~~--- 345 (405)
++ ......+|+|+. +|.+.|.++ +|.. |+| || |.+|+|.. .+--||..++++.-+|= ...
T Consensus 360 d~~~~~~~~s~~~~~fIaGVL-kHa~aL~A~~aPt~--NSY-RL-~g~EAP~~iisi~lG~~l~~vl~~i~~~~~g~~~~ 434 (729)
T 3o6x_A 360 KNPKGNMLFLTFLVNVLMMVH-KNQDLLRASIMSAG--NSH-RL-GANEAPPAILSIFLGSQLSATLDEIVRQVTNSKMT 434 (729)
T ss_dssp SSTTTCHHHHHHHHHHHHHHH-HTHHHHHHHSCCHH--HHT-TS-SSSSCCCSCCCEECCHHHHHHHHCC----------
T ss_pred CCccchhhHHHHHHHHHHHHH-HhHHHHHHHhCCCc--ccc-cc-CCCcCCchhhhhhhhHHHHHHHHHHHhhccCCCCC
Confidence 11 123468999995 999999997 8855 999 99 88888876 21113332222222221 000
Q ss_pred chhcc----ch------hhhhhhhccCCcccccccccccCCceeEecCCCCCCC---hHHHHHHHHHHhh
Q psy10062 346 AEQKK----GY------LEDRRVANRGASIRIPRDCAEQKKGYLEDRRPSSNCD---PYSVTEALIRTCV 402 (405)
Q Consensus 346 ~~~~~----~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~E~Rrp~~~~n---PYlv~~~ll~t~~ 402 (405)
..+|. |. ..+-.-.||...+|+. . .|||.|.|+|++| ||+|+++|++..+
T Consensus 435 ~~~~~~~~~Gv~~lP~~~~d~~drNRTspfaft---G----nrfEfR~~Gss~n~a~P~l~lnaivA~~L 497 (729)
T 3o6x_A 435 PEEKTTLKLGIGRIPEILLDTTDRNRTSPFAFT---G----NRFEFRAAGSSANCAAAMIAINAAMANQL 497 (729)
T ss_dssp -----------------------CCCSSSSCBC---S----SSEEETTSBSSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCcccCCCCccCcCccccCCCcccc---C----CeeEEecCCcccchhhHHHHHHHHHHHHH
Confidence 00000 00 0111112555555532 1 4999999999999 9999999998875
No 11
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.5e-23 Score=208.66 Aligned_cols=183 Identities=38% Similarity=0.598 Sum_probs=141.6
Q ss_pred CCCcccCCCCcCCCCCCCcceEEEeeeeecCCCCCCCCeEEEeccccCCCCcccchhhhhhhcCCCCCCCceEEEEEeee
Q psy10062 1 LPIWNYDGSSTYQSEGSNSDTFLHPVAIFKDPFRLGNNILMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATYIWID 80 (405)
Q Consensus 1 lp~w~fDGSSt~qa~g~nSd~~L~P~ai~~DPfr~~~~ilv~c~v~~~~~~~~~~~~~~~~y~~lP~~~~~~~a~yiwid 80 (405)
||.|+||||||+|+.+.+|||+|+|++++.|||+.+++.+|+||++ ..++.|.+.+.
T Consensus 54 ~~~~~fDGss~g~~~~~~sD~~l~Pdt~~~~Pw~~~~~a~vlcd~~--------------~~dG~P~~~~p--------- 110 (370)
T 3fky_A 54 LPEWNFDGSSTNQAPGHDSDIYLKPVAYYPDPFRRGDNIVVLAACY--------------NNDGTPNKFNH--------- 110 (370)
T ss_dssp SCCEEECGGGTTSSCCCC--EEEEEEEEEECTTTCTTCEEEEEEEE--------------CTTSSBCTTCC---------
T ss_pred CCccccCCcccccccCCCCCeeEeeeEEEEcCCCCCCeEEEEEEEE--------------cCCCCCCCCCH---------
Confidence 6899999999999999999999999999999999988999999998 55677877777
Q ss_pred CCCcccccccccccCcccCCCCCCCcchhhhhcCCccCCChhhhcccccccccccCCCcccccceeEEeeCCCCCceeee
Q psy10062 81 GTGEGIRAKDRTLTGVVKNVSGRPDQVYYLIMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATYIWIDGTGEGIRAK 160 (405)
Q Consensus 81 g~g~~~R~k~rtl~~~~~~~~~~P~w~fd~~~~~~~~GSS~~qa~~~~~SD~~L~~P~~~~~~~~~yi~~dp~G~~~~v~ 160 (405)
|...+...... +++ . |+ ++.|.||.+-+.+++...|.
T Consensus 111 ------R~iLkr~~~~~---~g~-----------------------------~---~~--~G~E~EF~Lf~~~~~~~~~p 147 (370)
T 3fky_A 111 ------RHEAAKLFAAH---KDE-----------------------------E---IW--FGLEQEYTLFDMYDDVYGWP 147 (370)
T ss_dssp ------HHHHHHHHHHT---GGG-----------------------------C---CE--EEEEEEEEEECTTSSBTTCC
T ss_pred ------HHHHHHHHHHh---cCC-----------------------------C---ce--EEeeeEEEEEccCCCcccCC
Confidence 77665322111 110 1 21 36778885555544433332
Q ss_pred cCCCCCCCCCCcchhhhhhhhhhhhHHHHHHHhhhhcceeeeec---CCCCCeeeecCc--chHHHHHHHHHHH---HHH
Q psy10062 161 CSQLPLLRKGPYYCGVGANKVYARDIVEAHYRACLYAGIEISGT---NAEGPYYCGVGA--NKVYARDIVEAHY---RAC 232 (405)
Q Consensus 161 c~~~P~~~qgryyc~~g~~kv~~rdi~eahyrac~~~GIeqEGp---~~QG~yyc~vG~--~~~~gRdI~eahy---rac 232 (405)
-+ ..+.++++|||..+..+.+.++++++++++|..+||++|+. .+.||||+.++. ...++|+++..++ ++|
T Consensus 148 ~~-~~p~~~g~yy~~~~~~~~~~~~i~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~~~~~~~l~aAD~~~~~K~~vk~vA 226 (370)
T 3fky_A 148 KG-GYPAPQGPYYCGVGAGKVYARDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVA 226 (370)
T ss_dssp TT-SBCSCSSSCTTCCSTTTCSCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHH
T ss_pred CC-CccCCCCccccccchhhHHHHHHHHHHHHHHHHcCCCeeeeecCcCCCceEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12 24568999999998888888999999999999999999962 234677776654 7899999999998 999
Q ss_pred HHcCCeEEEecCCcCCCCc
Q psy10062 233 LYAGIEISGTNAEVMPSQW 251 (405)
Q Consensus 233 e~aGI~isg~~pE~mPGQw 251 (405)
+++|+.+|+ ||||.+|+|
T Consensus 227 ~~~G~~ATF-mpKP~~gd~ 244 (370)
T 3fky_A 227 EEFGIKISF-HPKPLKGDW 244 (370)
T ss_dssp HTTTCEEEC-CSCSSSSSS
T ss_pred HHhCcEEEE-cccccCCCC
Confidence 999999998 999999864
No 12
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A*
Probab=99.84 E-value=4.1e-21 Score=191.66 Aligned_cols=184 Identities=39% Similarity=0.649 Sum_probs=139.5
Q ss_pred CCCcccCCCCcCCCCCCCcceEEEeeeeecCCCCCCCCeEEEeccccCCCCcccchhhhhhhcCCCCCCCceEEEEEeee
Q psy10062 1 LPIWNYDGSSTYQSEGSNSDTFLHPVAIFKDPFRLGNNILMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATYIWID 80 (405)
Q Consensus 1 lp~w~fDGSSt~qa~g~nSd~~L~P~ai~~DPfr~~~~ilv~c~v~~~~~~~~~~~~~~~~y~~lP~~~~~~~a~yiwid 80 (405)
+|.|+|||||+.|+.|.+|||+|+|++++.|||+.+++.+|+||++ ..++.|.+.+.
T Consensus 50 ~~g~~fdgss~~~~~~~~sD~~l~PDt~~~~P~~~~~~a~v~cd~~--------------~~dG~P~~~~p--------- 106 (356)
T 2d3a_A 50 LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCY--------------TPAGEPIPTNK--------- 106 (356)
T ss_dssp SCCEEEEGGGTTSSCSSSCEEEEEEEEEEECTTTCTTCEEEEEEEE--------------CTTSCBCTTCC---------
T ss_pred cCcceecccccccccCcCCcEEEEEEEEEECCcCCCCceEEEEEEE--------------CCCCCCCCCCH---------
Confidence 5789999999999999999999999999999999888999999998 45677776776
Q ss_pred CCCccccccccc-ccCcccCCCCCCCcchhhhhcCCccCCChhhhcccccccccccCCCcccccceeEEeeCCC-CCcee
Q psy10062 81 GTGEGIRAKDRT-LTGVVKNVSGRPDQVYYLIMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATYIWIDGT-GEGIR 158 (405)
Q Consensus 81 g~g~~~R~k~rt-l~~~~~~~~~~P~w~fd~~~~~~~~GSS~~qa~~~~~SD~~L~~P~~~~~~~~~yi~~dp~-G~~~~ 158 (405)
|...+. +... + ..+ .. |+ ++.|+||.+-+.+ +....
T Consensus 107 ------R~iLkr~~~~~-~-------------------------~~g-----~~---~~--~G~E~EF~lf~~~~~~~~~ 144 (356)
T 2d3a_A 107 ------RYSAAKIFSSP-E-------------------------VAA-----EE---PW--YGIEQEYTLLQKDTNWPLG 144 (356)
T ss_dssp ------HHHHHHHHHSH-H-------------------------HHH-----HC---CE--EEEEEEEEEEETTTCCBTT
T ss_pred ------HHHHHHHHHHH-H-------------------------hcC-----Ce---eE--EecceEEEEEecCCCcccc
Confidence 776543 2211 0 000 01 21 4677888444432 22222
Q ss_pred eecCCCCCCCCCCcchhhhhhhhhhhhHHHHHHHhhhhcceeeeec---CCCCCeeeecC--cchHHHHHHHHHHH---H
Q psy10062 159 AKCSQLPLLRKGPYYCGVGANKVYARDIVEAHYRACLYAGIEISGT---NAEGPYYCGVG--ANKVYARDIVEAHY---R 230 (405)
Q Consensus 159 v~c~~~P~~~qgryyc~~g~~kv~~rdi~eahyrac~~~GIeqEGp---~~QG~yyc~vG--~~~~~gRdI~eahy---r 230 (405)
| .....+.+++.|||....++.++++++++++++|..+||++|+. .+.||||+.++ +...++|+++..+| +
T Consensus 145 ~-~~~g~p~~~g~y~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~ 223 (356)
T 2d3a_A 145 W-PIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILER 223 (356)
T ss_dssp S-CTTSBCSCSSSCTTCCSTTTCCCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHH
T ss_pred c-ccCCCCCCCCCcCcCcccchHHHHHHHHHHHHHHHHCCCCEEEeecCcCCCceEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 3 12223458899999998888888999999999999999999962 22356666554 58899999999998 9
Q ss_pred HHHHcCCeEEEecCCcCCCCc
Q psy10062 231 ACLYAGIEISGTNAEVMPSQW 251 (405)
Q Consensus 231 ace~aGI~isg~~pE~mPGQw 251 (405)
+|+++|+.+|+ ||||.+|+|
T Consensus 224 vA~~~G~~aTF-mpKP~~~d~ 243 (356)
T 2d3a_A 224 ITEIAGVVVTF-DPKPIPGDW 243 (356)
T ss_dssp HHHHHTEEEEC-CSCSSCSSS
T ss_pred HHHHhCCEEEE-CCCccCCCC
Confidence 99999999998 999998764
No 13
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A
Probab=99.83 E-value=1.3e-20 Score=189.80 Aligned_cols=184 Identities=40% Similarity=0.689 Sum_probs=140.3
Q ss_pred CCCcccCCCCcCCCCCCCcceEEEeeeeecCCCCCCCCeEEEeccccCCCCcccchhhhhhhcCCCCCCCceEEEEEeee
Q psy10062 1 LPIWNYDGSSTYQSEGSNSDTFLHPVAIFKDPFRLGNNILMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATYIWID 80 (405)
Q Consensus 1 lp~w~fDGSSt~qa~g~nSd~~L~P~ai~~DPfr~~~~ilv~c~v~~~~~~~~~~~~~~~~y~~lP~~~~~~~a~yiwid 80 (405)
||.|+|||||+.|+++.+||++|+|+.++.|||+.+++.+|+||++ ..++.|.+.+.
T Consensus 76 ~p~~~~dgss~~~~~~~~sD~~l~PDt~~~~Pw~~~~~a~v~cd~~--------------~~dG~P~~~~p--------- 132 (384)
T 2ojw_A 76 LPEWNFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVF--------------KYNRRPAETNL--------- 132 (384)
T ss_dssp SCCEEEEGGGTTSSBTTBCEEEEEEEEEEECTTTCTTCEEEEEEEE--------------CTTSCBCTTCC---------
T ss_pred CccccccCcccccccCCCCcEEEEeeEEEECCCCCCCeEEEEEEEE--------------CCCCCCCCcCH---------
Confidence 6899999999999999999999999999999999878999999998 45677777776
Q ss_pred CCCcccccccccccCcccCCCCCCCcchhhhhcCCccCCChhhhcccccccccccCCCcccccceeEEeeCCCCCceeee
Q psy10062 81 GTGEGIRAKDRTLTGVVKNVSGRPDQVYYLIMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATYIWIDGTGEGIRAK 160 (405)
Q Consensus 81 g~g~~~R~k~rtl~~~~~~~~~~P~w~fd~~~~~~~~GSS~~qa~~~~~SD~~L~~P~~~~~~~~~yi~~dp~G~~~~v~ 160 (405)
|...|...... ++ + . |+ ++.|+||.+.+.++....+.
T Consensus 133 ------R~iLkr~~~~~---~g---~--------------------------~---~~--~G~E~EF~Lf~~~~~~~~~~ 169 (384)
T 2ojw_A 133 ------RHTCKRIMDMV---SN---Q--------------------------H---PW--FGMEQEYTLMGTDGHPFGWP 169 (384)
T ss_dssp ------HHHHHHHHHHT---GG---G--------------------------C---CE--EEEEEEEEEEC-CCSBTTCC
T ss_pred ------HHHHHHHHHHH---hC---C--------------------------E---EE--EEeeeEEEEEccCCCccccc
Confidence 77654321111 10 1 0 22 46778885555433222221
Q ss_pred cCCCCCCCCCCcchhhhhhhhhhhhHHHHHHHhhhhcceeeeec---CCCCCeeeecC--cchHHHHHHHHHHH---HHH
Q psy10062 161 CSQLPLLRKGPYYCGVGANKVYARDIVEAHYRACLYAGIEISGT---NAEGPYYCGVG--ANKVYARDIVEAHY---RAC 232 (405)
Q Consensus 161 c~~~P~~~qgryyc~~g~~kv~~rdi~eahyrac~~~GIeqEGp---~~QG~yyc~vG--~~~~~gRdI~eahy---rac 232 (405)
-. ..+.+++.|||....++.++|+++++++++|..+||++|+. .+.||||+.++ +...++|+++..++ ++|
T Consensus 170 ~~-g~p~~~g~y~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA 248 (384)
T 2ojw_A 170 SN-GFPGPQGPYYCGVGADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVC 248 (384)
T ss_dssp TT-SCCSCSSSCTTCCSTTTCCCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETTHHHHHHHHHHHHHHHHH
T ss_pred CC-CccCCCCCCCcccccchHHHHHHHHHHHHHHHHCCCCeEeeecCCCCcceEEEcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 11 23558999999998888888999999999999999999962 23356766665 47899999999998 999
Q ss_pred HHcCCeEEEecCCcCCCCcc
Q psy10062 233 LYAGIEISGTNAEVMPSQWE 252 (405)
Q Consensus 233 e~aGI~isg~~pE~mPGQwE 252 (405)
+++|+.+|+ +|||.+|+|.
T Consensus 249 ~~~Gl~aTF-mpKP~~~d~~ 267 (384)
T 2ojw_A 249 EDFGVIATF-DPKPIPGNWN 267 (384)
T ss_dssp HHHTCEEEC-CSCSSCSSSC
T ss_pred HHhCCEEEE-eccccCCCCC
Confidence 999999998 9999988653
No 14
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP}
Probab=99.33 E-value=6e-13 Score=137.25 Aligned_cols=188 Identities=17% Similarity=0.116 Sum_probs=129.0
Q ss_pred EEEEeeeCCCcccccccccccCccc-CCCCCCCcchhhhhcCCccCCChhhhcccccccccccCCCcccccceeE-EeeC
Q psy10062 74 ATYIWIDGTGEGIRAKDRTLTGVVK-NVSGRPDQVYYLIMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATY-IWID 151 (405)
Q Consensus 74 a~yiwidg~g~~~R~k~rtl~~~~~-~~~~~P~w~fd~~~~~~~~GSS~~qa~~~~~SD~~L~~P~~~~~~~~~y-i~~d 151 (405)
+...|+|-.| -+|+|+-......+ ..++ -+.|| |||+.+.....+||++|+ |+. +|+ +.||
T Consensus 20 V~l~f~D~~G-~~r~k~ip~~~~~~~~~~~--G~~fd--------gss~~g~~~~~~sD~~l~-PD~-----~T~~~~Pw 82 (473)
T 3ng0_A 20 IDLKFIDTPG-IWQHCSFYYDQLDENSFTE--GIPFD--------GSSIRGWKAINESDMCMV-PDP-----NTATIDPF 82 (473)
T ss_dssp EEEEEECSSS-CEEEEEEEGGGCCGGGGTT--CEEEE--------TTSSTTSCCGGGCEEEEE-ECG-----GGCEECTT
T ss_pred EEEEEECCCC-CEEEEEEeHHHHHHHHHhC--CCccc--------cccccccccCCCCcEEEE-eec-----CccEECCc
Confidence 4455667777 25776654444333 1222 36788 999976655558999999 998 665 7788
Q ss_pred CCCCceeeecCC------CCCCCCCCcchhhhhhhhhhhhHHHHHH--Hhhhhcceeee----e-------c--------
Q psy10062 152 GTGEGIRAKCSQ------LPLLRKGPYYCGVGANKVYARDIVEAHY--RACLYAGIEIS----G-------T-------- 204 (405)
Q Consensus 152 p~G~~~~v~c~~------~P~~~qgryyc~~g~~kv~~rdi~eahy--rac~~~GIeqE----G-------p-------- 204 (405)
..++..+|+|+. +|.+.+.|+.|+.+.+++. +.++ + +++|+|+| . +
T Consensus 83 ~~~~~a~v~cd~~~~~~g~p~~~~pR~iLkr~~~~~~-----~~G~~~~--~~~g~E~EF~l~~~~~~~~~~~~~~~~~~ 155 (473)
T 3ng0_A 83 CKEPTLSMICSIKEPRTGEWYNRDPRTIAAKAAEYLR-----GTGIADT--VYFGPEAEFFLFDDIRFGQTENSSYYFAD 155 (473)
T ss_dssp CSSCEEEEEEEEECTTTSSBCTTCHHHHHHHHHHHHH-----HHTSCSE--EEEEEEECEEEESEEEEEECSSCEEEEEE
T ss_pred CCCCcEEEEEEEeECCCCCCCCCChHHHHHHHHHHHH-----HcCCCcc--eEEEeeeEEEEEeeccccccccccccccc
Confidence 766789999975 6778888888888877665 3333 4 79999999 1 0
Q ss_pred ---------------------CCCCCeeeecCcchHHHHHHHHHHHHHHHHcCCeEEEecCCcC-CCCcccccc----cc
Q psy10062 205 ---------------------NAEGPYYCGVGANKVYARDIVEAHYRACLYAGIEISGTNAEVM-PSQWEFQDI----AK 258 (405)
Q Consensus 205 ---------------------~~QG~yyc~vG~~~~~gRdI~eahyrace~aGI~isg~~pE~m-PGQwE~q~~----~~ 258 (405)
.++|.|++ +.+ ...+++++++++++|+++||+++++|+|++ ||||||++. ++
T Consensus 156 ~~~~~~~~~~~~~~~~~g~~~~~~~~y~~-~~~-~d~~~~~~~~i~~~l~~~Gi~ve~~h~E~~~pGQ~Ei~~~~~~~l~ 233 (473)
T 3ng0_A 156 SVEGRWNTGREEEGGNLGYKPGYKQGYFP-VAP-TDTAQDIRTEMLLTMAAFGVPIEKHHHEVASGGQNELGIKFDKLVN 233 (473)
T ss_dssp CTTCGGGTTCCCTTCCCCCCCCTTCCSSC-CTT-TCCCHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHH
T ss_pred ccccccccccccccCCCCcccCCCccccc-cCc-cchhHHHHHHHHHHHHHCCCCeEEeecCcCCCCceEEEccCCCHHH
Confidence 01344333 322 123577888899999999999999999999 999999997 44
Q ss_pred cccCCCCCCCcceeeecCCCCcccHHHHHHHHHHHHHHHHHhhcccCCCC
Q psy10062 259 CQDLPIWNYDGSSTYQSEMREDNGIIEIEKAIDKLSKQHLRHIQAYDPKQ 308 (405)
Q Consensus 259 ~~~lp~~nG~G~H~~~S~~r~~~g~~~i~~ai~~l~~~h~~~i~~y~p~~ 308 (405)
+| +-...++..|..+..+|..+.... ||.
T Consensus 234 aA--------------------D~~~~~k~~vk~vA~~~G~~aTFm-pKP 262 (473)
T 3ng0_A 234 SA--------------------DNLMIYKYVIKNVAKKYGKTVTFM-PKP 262 (473)
T ss_dssp HH--------------------HHHHHHHHHHHHHHHHTTCEEECC-SCS
T ss_pred HH--------------------HHHHHHHHHHHHHHHHhCCEEEEc-Ccc
Confidence 44 123344667777777776655443 654
No 15
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A
Probab=99.24 E-value=1.2e-12 Score=134.82 Aligned_cols=189 Identities=15% Similarity=0.085 Sum_probs=125.5
Q ss_pred EEEEeeeCCCcccccccccccCcccCCCCCCCcchhhhhcCCccCCChhhhcccccccccccCCCcccccceeE-EeeCC
Q psy10062 74 ATYIWIDGTGEGIRAKDRTLTGVVKNVSGRPDQVYYLIMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATY-IWIDG 152 (405)
Q Consensus 74 a~yiwidg~g~~~R~k~rtl~~~~~~~~~~P~w~fd~~~~~~~~GSS~~qa~~~~~SD~~L~~P~~~~~~~~~y-i~~dp 152 (405)
+...|+|-.|. +|.|+-......+.+ ..+-|.|| |||+.+.....+||++|+ |+. +|+ +.||.
T Consensus 17 v~~~~~D~~G~-~r~k~vp~~~~~~~~-~~~g~~fd--------gss~~g~~~~~~sD~~l~-PD~-----~T~~~~Pw~ 80 (468)
T 1f52_A 17 VDLRFTDTKGK-EQHVTIPAHQVNAEF-FEEGKMFD--------GSSIGGWKGINESDMVLM-PDA-----STAVIDPFF 80 (468)
T ss_dssp EEEEEECTTSC-EEEEEEEGGGCCHHH-HHHCEEEE--------GGGSTTSCCSSCCEEEEE-ECG-----GGCEECSSC
T ss_pred EEEEEECCCCC-EEEEEEEHHHHHHHH-hhCceeec--------cccccccccCCCCCEEEE-Eec-----CCcEEcccc
Confidence 33445576662 455443222221100 01458898 988865544448999999 998 565 77776
Q ss_pred CCCceeeecCC------CCCCCCCCcchhhhhhhhhhhhHHHHHH--Hhhhhcceeeee-----------c---------
Q psy10062 153 TGEGIRAKCSQ------LPLLRKGPYYCGVGANKVYARDIVEAHY--RACLYAGIEISG-----------T--------- 204 (405)
Q Consensus 153 ~G~~~~v~c~~------~P~~~qgryyc~~g~~kv~~rdi~eahy--rac~~~GIeqEG-----------p--------- 204 (405)
.++..+++|+. +|.+.+.|+.++.+.+++. +.+| + +++|+|+|= +
T Consensus 81 ~~~~~~v~~d~~~~~~G~p~~~~pR~ilk~~~~~l~-----~~G~~~~--~~~G~E~EFfl~~~~~~~~~~~~~~~~~~~ 153 (468)
T 1f52_A 81 ADSTLIIRCDILEPGTLQGYDRDPRSIAKRAEDYLR-----ATGIADT--VLFGPEPEFFLFDDIRFGASISGSHVAIDD 153 (468)
T ss_dssp SSCEEEEEEEEECTTTCCCCTTCHHHHHHHHHHHHH-----HHTSCSE--EEEEEEEEEEEESEEEEEEETTEEEEEEEC
T ss_pred CCCceEEEEEEEeCCCCCcCCCCHHHHHHHHHHHHH-----HcCCCcc--eEEEeeeEEEEEeccccccCCccccccccc
Confidence 66789999954 6777777777777776664 5567 5 799999991 1
Q ss_pred --------------------CCCCCeeeecCcchHHHHHHHHHHHHHHHHcCCeEEEecCCcCCC-Ccccccc----ccc
Q psy10062 205 --------------------NAEGPYYCGVGANKVYARDIVEAHYRACLYAGIEISGTNAEVMPS-QWEFQDI----AKC 259 (405)
Q Consensus 205 --------------------~~QG~yyc~vG~~~~~gRdI~eahyrace~aGI~isg~~pE~mPG-QwE~q~~----~~~ 259 (405)
..++.||+....+ ..++|.++++++|+++||++++.|+|++|| ||||++. +++
T Consensus 154 ~~~~~~~~~~~~~~~~g~~~~~~~~Y~~~~~~~--~~~~~~~~i~~~l~~~Gi~ve~~h~E~apggQ~Ei~~~~~~~l~a 231 (468)
T 1f52_A 154 IEGAWNSSTKYEGGNKGHRPGVKGGYFPVPPVD--SAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKK 231 (468)
T ss_dssp TTCGGGGGCCCTTCCCCCCCCTTCCSSBCTTSS--CCHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHH
T ss_pred cccccCCCccccccCCCCCCCCCCCccCCCccc--cHHHHHHHHHHHHHHCCCCeEEeecCCCCceeEEEeccCCCHHHH
Confidence 1123444433332 468899999999999999999999999996 9999987 443
Q ss_pred ccCCCCCCCcceeeecCCCCcccHHHHHHHHHHHHHHHHHhhcccCCCC
Q psy10062 260 QDLPIWNYDGSSTYQSEMREDNGIIEIEKAIDKLSKQHLRHIQAYDPKQ 308 (405)
Q Consensus 260 ~~lp~~nG~G~H~~~S~~r~~~g~~~i~~ai~~l~~~h~~~i~~y~p~~ 308 (405)
| +-...++..|..+..+|.-+.... ||.
T Consensus 232 A--------------------D~~~~~k~~vk~vA~~hGl~atFm-pKP 259 (468)
T 1f52_A 232 A--------------------DEIQIYKYVVHNVAHRFGKTATFM-PKP 259 (468)
T ss_dssp H--------------------HHHHHHHHHHHHHHHHTTCEEECC-SCS
T ss_pred H--------------------HHHHHHHHHHHHHHHHhCCEEEEe-CCC
Confidence 3 123344667777777776655443 654
No 16
>4hpp_A Probable glutamine synthetase; glutamine synthase homolog, glutamate, polyamine, ligase; HET: GLU; 2.50A {Pseudomonas aeruginosa}
Probab=99.22 E-value=4.3e-11 Score=122.71 Aligned_cols=155 Identities=14% Similarity=0.018 Sum_probs=114.1
Q ss_pred CCcceEEEee--eeecCCCCCC----CCeEEEeccccCCCCcccchhhhhhhcCCCCCCCceEEEEEeeeCCCccccccc
Q psy10062 17 SNSDTFLHPV--AIFKDPFRLG----NNILMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATYIWIDGTGEGIRAKD 90 (405)
Q Consensus 17 ~nSd~~L~P~--ai~~DPfr~~----~~ilv~c~v~~~~~~~~~~~~~~~~y~~lP~~~~~~~a~yiwidg~g~~~R~k~ 90 (405)
.+||++|+|+ ..+.+||+.+ ++.+|+||++ ..++.|.+.+. |...
T Consensus 62 ~~~D~~l~PD~~T~~~~Pw~~~~~~~~~a~v~cd~~--------------~~dG~p~~~~p---------------R~~L 112 (443)
T 4hpp_A 62 SHGDLRLLPDPNSRVRVEQGPDAAAPALDYLHGNLV--------------ETDGTPWPACP---------------RSLL 112 (443)
T ss_dssp SSCCEEEEECGGGCEEECCCSSTTSCCEEEEEEEEE--------------CTTSCBCTTCH---------------HHHH
T ss_pred CCCCEEEEEcccceEECCcccccCCCCeEEEEEEEE--------------CCCCCCCCCCh---------------HHHH
Confidence 4599999999 6799999973 6889999998 44667776666 6655
Q ss_pred ccccCcccCCCCCCCcchhhhhcCCccCCChhhhcccccccccccCCCcccccceeEEeeCCCCCceeeecCCCCCCCCC
Q psy10062 91 RTLTGVVKNVSGRPDQVYYLIMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATYIWIDGTGEGIRAKCSQLPLLRKG 170 (405)
Q Consensus 91 rtl~~~~~~~~~~P~w~fd~~~~~~~~GSS~~qa~~~~~SD~~L~~P~~~~~~~~~yi~~dp~G~~~~v~c~~~P~~~qg 170 (405)
|...... +..|. . |+ ++.|.||.+-+. .+.+++
T Consensus 113 ~r~~~~~-------------------------~~~G~-----~---~~--~g~E~EF~l~~~------------~p~~~~ 145 (443)
T 4hpp_A 113 RAEVERY-------------------------RDSGL-----Q---VI--AAFEHEFSLLGL------------PGERPA 145 (443)
T ss_dssp HHHHHHH-------------------------HHTTE-----E---EE--EEEEEEEEEECC------------CSSSCC
T ss_pred HHHHHHH-------------------------HHcCC-----e---EE--EEeeeEEEEecc------------ccCCCC
Confidence 4321100 00111 1 11 357777744331 345688
Q ss_pred CcchhhhhhhhhhhhHHHHHHHhhhhcceeeeec---CCCCCeeeecCc--chHHHHHHHHHHH---HHHHHcCCeEEEe
Q psy10062 171 PYYCGVGANKVYARDIVEAHYRACLYAGIEISGT---NAEGPYYCGVGA--NKVYARDIVEAHY---RACLYAGIEISGT 242 (405)
Q Consensus 171 ryyc~~g~~kv~~rdi~eahyrac~~~GIeqEGp---~~QG~yyc~vG~--~~~~gRdI~eahy---race~aGI~isg~ 242 (405)
.||+-...++ +++++++++++|..+||++|+. .+.|||++.++. ...++|+++..++ ++|+++|+.+|+
T Consensus 146 ~~y~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~G~~aTF- 222 (443)
T 4hpp_A 146 AAFSLQAQRA--AGQFPGWLVSALAQAGTEPEMFLPEYGQRQYEVTCRPAQGVAAADRAVNVREVTREVARQMGLRTCF- 222 (443)
T ss_dssp CTTCHHHHHH--TTTHHHHHHHHHHHTTCCEEEEEECSSTTEEEEEECCEETHHHHHHHHHHHHHHHHHHHHHTCEEEC-
T ss_pred ccCCCCcccc--hHHHHHHHHHHHHHCCCCeEEeecCCCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEE-
Confidence 8998877765 5899999999999999999962 234777777665 7799999999998 999999999998
Q ss_pred cCCcCCCC
Q psy10062 243 NAEVMPSQ 250 (405)
Q Consensus 243 ~pE~mPGQ 250 (405)
||||..|+
T Consensus 223 mpKP~~~~ 230 (443)
T 4hpp_A 223 APLPAPGA 230 (443)
T ss_dssp SSSSSTTC
T ss_pred ecccCCCC
Confidence 99999876
No 17
>4acf_A Glutamine synthetase 1; ligase, nucleotide-binding, TRI-substituted IMID TAUT state, RV2220, GLNA1; HET: 46B P3S; 2.00A {Mycobacterium tuberculosis} PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 2bvc_A* 1hto_A* 1htq_A*
Probab=99.16 E-value=4.4e-12 Score=131.04 Aligned_cols=191 Identities=17% Similarity=0.105 Sum_probs=127.7
Q ss_pred EEEEeeeCCCcccccccccccCcccCC-CCCCCcchhhhhcCCccCCChhhhcccccccccccCCCcccccceeE-EeeC
Q psy10062 74 ATYIWIDGTGEGIRAKDRTLTGVVKNV-SGRPDQVYYLIMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATY-IWID 151 (405)
Q Consensus 74 a~yiwidg~g~~~R~k~rtl~~~~~~~-~~~P~w~fd~~~~~~~~GSS~~qa~~~~~SD~~L~~P~~~~~~~~~y-i~~d 151 (405)
+...|+|-.|. +|+|+-......+.+ ++. -.|| |||+.+.....+||++|+ |+. +|+ +.||
T Consensus 29 V~l~f~D~~G~-~r~k~ip~~~~~~~~~~~G--~~fd--------gssi~G~~~~~~sD~~l~-PD~-----~T~~~~Pw 91 (486)
T 4acf_A 29 VDVRFCDLPGI-MQHFTIPASAFDKSVFDDG--LAFD--------GSSIRGFQSIHESDMLLL-PDP-----ETARIDPF 91 (486)
T ss_dssp EEEEEECSSSC-EEEEEEEGGGCSHHHHHTC--EEEE--------GGGSTTSCCGGGCEEEEE-ECG-----GGCEECSS
T ss_pred EEEEEECCCCc-EEEEEEEHHHHHHHHHHCC--Ceee--------cccccccccCCCCCEEEE-Ecc-----ceeEECCc
Confidence 45566787773 566654333322211 111 2456 999877766668999999 998 666 8888
Q ss_pred CCCCceeeecCC------CCCCCCCCcchhhhhhhhhhhhHHHHHHHhhhhcceeeee---------cC-----------
Q psy10062 152 GTGEGIRAKCSQ------LPLLRKGPYYCGVGANKVYARDIVEAHYRACLYAGIEISG---------TN----------- 205 (405)
Q Consensus 152 p~G~~~~v~c~~------~P~~~qgryyc~~g~~kv~~rdi~eahyrac~~~GIeqEG---------p~----------- 205 (405)
..+....+.|.. .|.+.+.|+.++.+.+++. +.++.--+++|+|+|= ..
T Consensus 92 ~~~~~~~v~~~~~d~~~g~P~~~~pR~iLk~~~~~~~-----~~g~~~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~ 166 (486)
T 4acf_A 92 RAAKTLNINFFVHDPFTLEPYSRDPRNIARKAENYLI-----STGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAI 166 (486)
T ss_dssp CSSCEEEEEEEEECTTTCCBCTTCHHHHHHHHHHHHH-----HHSSCSEEEEEEEECEEEESEEEEEECSSCEEEEEECT
T ss_pred CCCccEEEEEEEeeCCCCCCCCCCchHHHHHHHHHHH-----HcCCcceecccceeEEEEeccccccccccCCcccCCcc
Confidence 767666665543 6777788887877776654 4444333789999990 00
Q ss_pred ----------------------CCCCeeeecCcchHHHHHHHHHHHHHHHHcCCeEEEecCCcCC-CCcccccc----cc
Q psy10062 206 ----------------------AEGPYYCGVGANKVYARDIVEAHYRACLYAGIEISGTNAEVMP-SQWEFQDI----AK 258 (405)
Q Consensus 206 ----------------------~QG~yyc~vG~~~~~gRdI~eahyrace~aGI~isg~~pE~mP-GQwE~q~~----~~ 258 (405)
.++..||.+.+... .++|+++++++|+++||+++++|+|++| |||||++. |+
T Consensus 167 ~g~~~~~~~~~~~g~p~~~~~~~~~~~y~~~~~~~~-~~~~~~~i~~~l~~~Gi~ve~~h~E~gp~GQ~Ei~~~~~~~l~ 245 (486)
T 4acf_A 167 SGWWNTGAATEADGSPNRGYKVRHKGGYFPVAPNDQ-YVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFNSLLH 245 (486)
T ss_dssp TBGGGTTCSBCTTSCBCCCCCBCTTCCSSBCTTTSC-CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHH
T ss_pred ccccCCCCcccCCCCCCCCcccccCCccccCCcchh-HHHHHHHHHHHHHhCCceEEeeeeeeeccceeEEeccCcchhh
Confidence 11334777766443 4789999999999999999999999998 99999997 55
Q ss_pred cccCCCCCCCcceeeecCCCCcccHHHHHHHHHHHHHHHHHhhcccCCCC
Q psy10062 259 CQDLPIWNYDGSSTYQSEMREDNGIIEIEKAIDKLSKQHLRHIQAYDPKQ 308 (405)
Q Consensus 259 ~~~lp~~nG~G~H~~~S~~r~~~g~~~i~~ai~~l~~~h~~~i~~y~p~~ 308 (405)
+|| -.-.++..|..+..+|..+.... ||.
T Consensus 246 aAD--------------------~~~~~k~~vk~vA~~~G~~aTFm-pKP 274 (486)
T 4acf_A 246 AAD--------------------DMQLYKYIIKNTAWQNGKTVTFM-PKP 274 (486)
T ss_dssp HHH--------------------HHHHHHHHHHHHHHHTTCEEECC-SCS
T ss_pred hhh--------------------HHHHHHHHHHHHHHHcCCeEEEe-ecc
Confidence 541 12334566777776666555443 554
No 18
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus}
Probab=99.15 E-value=6.2e-12 Score=128.00 Aligned_cols=163 Identities=13% Similarity=0.004 Sum_probs=108.0
Q ss_pred cccCCCC---cCCCCCCCcceEEEeee--eecCCCCCCCCeEEEeccccCCCCcccchhhhhhhcCCCCCCCceEEEEEe
Q psy10062 4 WNYDGSS---TYQSEGSNSDTFLHPVA--IFKDPFRLGNNILMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATYIW 78 (405)
Q Consensus 4 w~fDGSS---t~qa~g~nSd~~L~P~a--i~~DPfr~~~~ilv~c~v~~~~~~~~~~~~~~~~y~~lP~~~~~~~a~yiw 78 (405)
|+||||| +.|+.|.+||++|+|+. .+.+||+..++.+|+|| . +.|.+.+.
T Consensus 45 ~~~~gs~~~~~~~~~~~~sD~~l~PD~~T~~~~Pw~~~~~a~v~cd--d----------------G~P~~~~p------- 99 (421)
T 2j9i_A 45 RGYLEDGEVNAGAAGAAASDIVLMPELSTAAVAAAAAAATAAVICD--G----------------GAAAAASP------- 99 (421)
T ss_dssp HCEEECGGGSTTTCCTTCCCEEEEECSSCCEECTTSSSSEEEEEEE--E----------------ESSCSCCH-------
T ss_pred CeeecccCcccccccCCCCCEEEEEecCceEEcCcCCCCeEEEEcC--C----------------CCCCCCCh-------
Confidence 7899998 77778888999999996 79999975678899998 1 22333333
Q ss_pred eeCCCcccccccccccCcccCCCCCCCcchhhhhcCCccCCChhhhcccccccccccCCCcccccceeEEeeCCCCCcee
Q psy10062 79 IDGTGEGIRAKDRTLTGVVKNVSGRPDQVYYLIMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATYIWIDGTGEGIR 158 (405)
Q Consensus 79 idg~g~~~R~k~rtl~~~~~~~~~~P~w~fd~~~~~~~~GSS~~qa~~~~~SD~~L~~P~~~~~~~~~yi~~dp~G~~~~ 158 (405)
|+-.+...... +..|. .| . |+ ++.|+||.+.+.+....
T Consensus 100 --------R~iLk~~~~~~-------------------------~~~G~--~d-~---~~--~g~E~EF~l~~~~~~~~- 137 (421)
T 2j9i_A 100 --------RYIARAALAQL-------------------------QAAGA--AA-G---LL--SAFIADFCIFGVPEVIN- 137 (421)
T ss_dssp --------HHHHHHHHHHH-------------------------HHTTS--CS-E---EC--CEECCCCEEESCCEEEE-
T ss_pred --------HHHHHHHHHHH-------------------------HhcCC--cc-C---ce--EEeeeEEEEEecCCCCC-
Confidence 44332211000 00000 00 0 11 25666664444321000
Q ss_pred eecCCCCCCCCCCcchhhhhhhhhhhhHHHHHHHhhhhcceeeeecC---CCCCeeeec--Cc-chHHHHHHHHHHH---
Q psy10062 159 AKCSQLPLLRKGPYYCGVGANKVYARDIVEAHYRACLYAGIEISGTN---AEGPYYCGV--GA-NKVYARDIVEAHY--- 229 (405)
Q Consensus 159 v~c~~~P~~~qgryyc~~g~~kv~~rdi~eahyrac~~~GIeqEGp~---~QG~yyc~v--G~-~~~~gRdI~eahy--- 229 (405)
..++||..+. ...+++++++++++|. +||++|+.+ +.|||++.+ .+ ...++|+++..++
T Consensus 138 ----------~~p~y~~~~~-~~~~~~~~~~i~~~l~-~Gi~ve~~h~E~apgQ~Ei~~~~~~~~l~aaD~~~~~k~~vk 205 (421)
T 2j9i_A 138 ----------SKTISFPAST-TAAAADQPQEAAAGGA-AGAAAGAAGGAAAAGAAEICFLPEAAGAAAADNAFTLRTGLQ 205 (421)
T ss_dssp ----------CSSCEEEECC-CTTCTTGGGSCCTTCC-CSCCCBTTBCCCCCSSCCTTTTTTTCCSCTTTHHHHHHHHHH
T ss_pred ----------CCCCcCCCCc-ccchhHHHHHHHHHHh-CCCCeEEeecCCCCCcEEEecCCCChHHHHHHHHHHHHHHHH
Confidence 0234665554 3456888899999999 999999622 235677666 66 7789999999998
Q ss_pred HHHHHcCCeEEEecCCc
Q psy10062 230 RACLYAGIEISGTNAEV 246 (405)
Q Consensus 230 race~aGI~isg~~pE~ 246 (405)
++|+++|+.+++ ||||
T Consensus 206 ~vA~~~G~~atF-mpKP 221 (421)
T 2j9i_A 206 EVARRYNAIASA-AAAA 221 (421)
T ss_dssp HHHHTTTCEEEC-CTTS
T ss_pred HHHHHhCCEEEE-cCCc
Confidence 999999999998 9999
No 19
>3qaj_A Glutamine synthetase; AMP-PCP, ACP, ligase; HET: GLU ADP RGP CIT AMP; 3.05A {Bacillus subtilis}
Probab=99.14 E-value=2.5e-11 Score=124.45 Aligned_cols=173 Identities=16% Similarity=0.094 Sum_probs=116.3
Q ss_pred cccCCCCc-CCCCCCCcceEEEee--eeecCCCCCC--CCeEEEeccccCCCCcccchhhhhhhcCCCCCCCceEEEEEe
Q psy10062 4 WNYDGSST-YQSEGSNSDTFLHPV--AIFKDPFRLG--NNILMSHGVLGNSPNAAMNKTVLDKYLALPVPADKIQATYIW 78 (405)
Q Consensus 4 w~fDGSSt-~qa~g~nSd~~L~P~--ai~~DPfr~~--~~ilv~c~v~~~~~~~~~~~~~~~~y~~lP~~~~~~~a~yiw 78 (405)
+.|||||+ +++...+||++|+|+ ..+.+||+.+ +...|+|+++ ..++.|.+.+-
T Consensus 50 ~~fdgssi~g~~~~~~~D~~l~PD~~T~~~~Pw~~~~~~~a~v~cd~~--------------~~dG~p~~~~p------- 108 (444)
T 3qaj_A 50 VMFDGSSIEGFVRIEESDMYLYPDLNTFVIFPWTAEKGKVARFICDIY--------------NPDGTPFEGDP------- 108 (444)
T ss_dssp CEEETTTSTTSSCTTCCEEECCBCGGGCEEEHHHHHHHCEEEEEBCCB--------------CTTSCBCSSCH-------
T ss_pred ccccCccccCccCCCCCCEEEEEecCceEECccccCCCCeEEEEEEEE--------------CCCCCCCCCCh-------
Confidence 57999999 555667799999999 6688999876 5788999998 34566665665
Q ss_pred eeCCCccccccccc-ccCcccCCCCCCCcchhhhhcCCccCCChhhhcccccccccccCCC-cccccceeE-EeeC-CCC
Q psy10062 79 IDGTGEGIRAKDRT-LTGVVKNVSGRPDQVYYLIMSHGVLGNSPNAAMNKTVLDKYLALPV-PADKIQATY-IWID-GTG 154 (405)
Q Consensus 79 idg~g~~~R~k~rt-l~~~~~~~~~~P~w~fd~~~~~~~~GSS~~qa~~~~~SD~~L~~P~-~~~~~~~~y-i~~d-p~G 154 (405)
|.-.|. +... ++. | . . ..++.|.|| +|.. .+|
T Consensus 109 --------R~iLkr~~~~~----~~~--------------G--------~----------~~~~~g~E~EF~l~~~~~~g 144 (444)
T 3qaj_A 109 --------RNNLKRILKEM----EDL--------------G--------F----------SDFNLGPEPEFFLFKLDEKG 144 (444)
T ss_dssp --------HHHHHHHHHHH----HTT--------------T--------C----------CEEEEEEEECEEEEEECSSS
T ss_pred --------HHHHHHHHHHH----HHc--------------C--------C----------CeeeEEeceEEEEEecCCCC
Confidence 654432 2211 010 0 0 0 013455666 4432 233
Q ss_pred CceeeecCCCCCCCCCCcchhhhhhhhhhhhHHHHHHHhhhhcceeeeec---CCCCCeeeecCc--chHHHHHHHHHHH
Q psy10062 155 EGIRAKCSQLPLLRKGPYYCGVGANKVYARDIVEAHYRACLYAGIEISGT---NAEGPYYCGVGA--NKVYARDIVEAHY 229 (405)
Q Consensus 155 ~~~~v~c~~~P~~~qgryyc~~g~~kv~~rdi~eahyrac~~~GIeqEGp---~~QG~yyc~vG~--~~~~gRdI~eahy 229 (405)
.... .+..++.||.-...+. +.+++..-+.+|..+||++|+. .+.|||++.+.. ...++|+++..++
T Consensus 145 ~~~~------~~~~~~~y~~~~~~d~--~~~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~~~~~~~l~aAD~~~~~k~ 216 (444)
T 3qaj_A 145 EPTL------ELNDKGGYFDLAPTDL--GENCRRDIVLELEEMGFEIEASHHEVAPGQHEIDFKYAGAVRSCDDIQTFKL 216 (444)
T ss_dssp CEEE------EESCCCCTTCCTTTSC--CTTHHHHHHHHHHTTTCCEEEEEECSSTTEEEEEECCEEHHHHHHHHHHHHH
T ss_pred CCCC------cCcCCCCccccCCCcc--hHHHHHHHHHHHHHCCCCeEEeEcCcCCCcEEEecCCChHHHHHHHHHHHHH
Confidence 2221 2334556654333332 3566667777889999999962 234777777765 7799999999998
Q ss_pred ---HHHHHcCCeEEEecCCcCCCC
Q psy10062 230 ---RACLYAGIEISGTNAEVMPSQ 250 (405)
Q Consensus 230 ---race~aGI~isg~~pE~mPGQ 250 (405)
++|+++|+.+|+ ||||.+|+
T Consensus 217 ~vk~vA~~~G~~aTF-mpKP~~~~ 239 (444)
T 3qaj_A 217 VVKTIARKHGLHATF-MPKPLFGV 239 (444)
T ss_dssp HHHHHHHHTTEEEEC-CSCSSTTS
T ss_pred HHHHHHHHcCCEEEE-cCCcCCCC
Confidence 999999999998 99999887
No 20
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis}
Probab=97.37 E-value=0.00014 Score=78.78 Aligned_cols=75 Identities=11% Similarity=0.032 Sum_probs=55.3
Q ss_pred chhhhhhhhhhhhHHHHHHHhhhhcceeeeecC---CCCCeeeecC--cchHHHHHHHHHHH---HHHHHcCCeEEEecC
Q psy10062 173 YCGVGANKVYARDIVEAHYRACLYAGIEISGTN---AEGPYYCGVG--ANKVYARDIVEAHY---RACLYAGIEISGTNA 244 (405)
Q Consensus 173 yc~~g~~kv~~rdi~eahyrac~~~GIeqEGp~---~QG~yyc~vG--~~~~~gRdI~eahy---race~aGI~isg~~p 244 (405)
|.+..-+++ +++.+.-.++|..+||++|+.+ +.|||++.+. +...++|+++..++ ++|..+|+.+++ ||
T Consensus 254 Yf~~~pd~~--~~~~~di~~~L~~~GI~ve~~H~EvaPGQ~EI~~~~~~al~AAD~~~l~K~vvK~VA~~hGl~ATF-MP 330 (729)
T 3o6x_A 254 YFGSIPPRV--TAFMKELEIECHKLGIPVKTRHNEVAPNQFELAPIFENCNLANDHNQLVMDLMKRIARKHHFAVLF-HE 330 (729)
T ss_dssp ----CCHHH--HHHHHHHHHHHHHHTCCEEEECBCSSTTEECCEECCEEHHHHHHHHHHHHHHHHHHHHHTTEEEEC-SS
T ss_pred cCCCCchhH--HHHHHHHHHHHHHCCCCeEEeecCCCCCceEeccCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEE-ec
Confidence 455544332 5666777788999999999622 2356666555 47799999999998 999999999998 99
Q ss_pred CcCCCC
Q psy10062 245 EVMPSQ 250 (405)
Q Consensus 245 E~mPGQ 250 (405)
||.+|+
T Consensus 331 KP~~g~ 336 (729)
T 3o6x_A 331 KPYNGV 336 (729)
T ss_dssp CSSTTS
T ss_pred ccCCCC
Confidence 999885
Done!