RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10062
(405 letters)
>gnl|CDD|177922 PLN02284, PLN02284, glutamine synthetase.
Length = 354
Score = 210 bits (536), Expect = 1e-64
Identities = 106/270 (39%), Positives = 126/270 (46%), Gaps = 103/270 (38%)
Query: 169 KGPYYCGVGANKVYARDIVEAHYRACLYAGIEISGTNAEGPYYCGVGANKVYARDIVEAH 228
+GPYYCGVGA+K + RDIV+AHY+AC
Sbjct: 154 QGPYYCGVGADKAFGRDIVDAHYKAC---------------------------------- 179
Query: 229 YRACLYAGIEISGTNAEVMPSQWEFQDIAKCQDL-------------------------- 262
LYAGI ISG N EVMP QWEFQ + +
Sbjct: 180 ----LYAGINISGINGEVMPGQWEFQ-VGPVVGISAGDQLWVARYILERITEIAGVVVSF 234
Query: 263 ---PI---WNYDGSSTYQS--EMREDNGIIEIEKAIDKLSKQHLRHIQAYDPKQGKDNER 314
PI WN G+ T S MRED G I+KAI+KL +H HI AY G+ NER
Sbjct: 235 DPKPIPGDWNGAGAHTNYSTKSMREDGGYEVIKKAIEKLGLRHKEHIAAY----GEGNER 290
Query: 315 RLTGKHETSSIHDFSAGVANRGASIRIPRDCAEQKKGYLEDRRVANRGASIRIPRDCAEQ 374
RLTGKHET+ I+ FS GVANRGASIR+ RD +K+G
Sbjct: 291 RLTGKHETADINTFSWGVANRGASIRVGRDT--EKEG----------------------- 325
Query: 375 KKGYLEDRRPSSNCDPYSVTEALIRTCVLN 404
KGY EDRRP+SN DPY VT + T +L
Sbjct: 326 -KGYFEDRRPASNMDPYVVTSMIAETTILW 354
Score = 73.6 bits (181), Expect = 2e-14
Identities = 28/40 (70%), Positives = 32/40 (80%)
Query: 1 LPIWNYDGSSTYQSEGSNSDTFLHPVAIFKDPFRLGNNIL 40
LP WNYDGSST Q+ G +S+ L+P AIFKDPFR GNNIL
Sbjct: 50 LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNIL 89
Score = 51.2 bits (123), Expect = 4e-07
Identities = 22/46 (47%), Positives = 26/46 (56%)
Query: 63 LALPVPADKIQATYIWIDGTGEGIRAKDRTLTGVVKNVSGRPDQVY 108
L L DKI A YIWI G+G +R+K RTL G V + S P Y
Sbjct: 10 LNLSDSTDKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNY 55
Score = 40.4 bits (95), Expect = 0.001
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 134 LALPVPADKIQATYIWIDGTGEGIRAKCSQLP 165
L L DKI A YIWI G+G +R+K LP
Sbjct: 10 LNLSDSTDKIIAEYIWIGGSGMDLRSKARTLP 41
Score = 34.7 bits (80), Expect = 0.067
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 13/57 (22%)
Query: 256 IAKCQDLPIWNYDGSSTYQSEMREDNGIIEIEKAIDKLSKQHLRHIQAYDPKQGKDN 312
+ LP WNYDGSST Q+ ED+ +I +AI K DP +G +N
Sbjct: 44 VTDPSKLPKWNYDGSSTGQAP-GEDSEVILYPQAIFK------------DPFRGGNN 87
>gnl|CDD|178603 PLN03036, PLN03036, glutamine synthetase; Provisional.
Length = 432
Score = 187 bits (475), Expect = 5e-55
Identities = 109/232 (46%), Positives = 124/232 (53%), Gaps = 63/232 (27%)
Query: 207 EGPYYCGVGANKVYARDIVEAHYRACLYAGIEISGTNAEVMPSQWEFQ----------DI 256
+GPYYCG GA+K + RDI +AHY+ACLYAGI ISGTN EVMP QWE+Q D
Sbjct: 214 QGPYYCGAGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDH 273
Query: 257 AKCQDL------------------PI---WNYDGSSTYQS--EMREDNGIIEIEKAIDKL 293
C PI WN G T S MRE+ G I+KAI L
Sbjct: 274 IWCSRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREEGGFEVIKKAILNL 333
Query: 294 SKQHLRHIQAYDPKQGKDNERRLTGKHETSSIHDFSAGVANRGASIRIPRDCAEQKKGYL 353
S +H HI AY G+ NERRLTGKHET+SI FS GVANRG SIR+ RD +KKG
Sbjct: 334 SLRHKEHISAY----GEGNERRLTGKHETASIDTFSWGVANRGCSIRVGRD--TEKKG-- 385
Query: 354 EDRRVANRGASIRIPRDCAEQKKGYLEDRRPSSNCDPYSVTEALIRTCVLNE 405
KGYLEDRRP+SN DPY VT L T +L E
Sbjct: 386 ----------------------KGYLEDRRPASNMDPYIVTSLLAETTILWE 415
Score = 66.5 bits (162), Expect = 6e-12
Identities = 28/41 (68%), Positives = 33/41 (80%)
Query: 1 LPIWNYDGSSTYQSEGSNSDTFLHPVAIFKDPFRLGNNILM 41
LP WNYDGSST Q+ G +S+ L+P AIFKDPFR GNNIL+
Sbjct: 110 LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILV 150
Score = 32.6 bits (74), Expect = 0.36
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 13/52 (25%)
Query: 261 DLPIWNYDGSSTYQSEMREDNGIIEIEKAIDKLSKQHLRHIQAYDPKQGKDN 312
+LP WNYDGSST Q+ ED+ +I +AI K DP +G +N
Sbjct: 109 ELPKWNYDGSSTGQAP-GEDSEVILYPQAIFK------------DPFRGGNN 147
Score = 29.9 bits (67), Expect = 2.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 141 DKIQATYIWIDGTGEGIRAK 160
D+I A YIWI G+G +R+K
Sbjct: 77 DRIIAEYIWIGGSGIDLRSK 96
>gnl|CDD|215731 pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain.
Length = 259
Score = 123 bits (311), Expect = 1e-32
Identities = 59/238 (24%), Positives = 80/238 (33%), Gaps = 74/238 (31%)
Query: 208 GPYYCGVGANKV--YARDIVEAHYRACLYAGIEISGTNAEVMPSQWEFQ----------- 254
GPYY G ARDI +A AGI + G + EV P Q E
Sbjct: 52 GPYYGGYFPVAPLDEARDIRRDIVKALEAAGIPVEGIHHEVAPGQHEIDLRFADALEAAD 111
Query: 255 ----------DIAKCQDL-------PIWNYDGSS--TYQS---------EMREDNGIIE- 285
+A+ L PI+ +GS T+QS + +G
Sbjct: 112 NLQLFKYVVKRVAEKHGLTATFMPKPIFGDNGSGMHTHQSLWDRKDGKNLFADGDGYAGL 171
Query: 286 IEKAIDKLS--KQHLRHIQAYDPKQGKDNERRLTGKHETSSIHDFSAGVANRGASIRIPR 343
E A + +H I AY ++ +RL T + + GV NR ASIRIPR
Sbjct: 172 SETARHFIGGILKHAPAITAYTA-PTVNSYKRLVP--GTEAPVYIAWGVRNRSASIRIPR 228
Query: 344 DCAEQKKGYLEDRRVANRGASIRIPRDCAEQKKGYLEDRRPSSNCDPYSVTEALIRTC 401
K G +EDR P + +PY AL+
Sbjct: 229 G---------------------------GGPKAGRVEDRLPDPDANPYLALAALLAAG 259
>gnl|CDD|223252 COG0174, GlnA, Glutamine synthetase [Amino acid transport and
metabolism].
Length = 443
Score = 78.1 bits (193), Expect = 1e-15
Identities = 49/235 (20%), Positives = 74/235 (31%), Gaps = 77/235 (32%)
Query: 208 GPYYCGVGANKV--YARDIVEAHYRACLYAGIEISGTNAEVMPSQWEFQ----------- 254
G Y+ ++ + RDIVEA A GIEI + EV P Q+E
Sbjct: 153 GGYFDVAPLDEAEDFRRDIVEALEAA----GIEIEAIHHEVAPGQFEINLRFDDALKAAD 208
Query: 255 ----------DIAKCQDL-------PIWNYDGSS--TYQSEMREDNGII----------- 284
++A+ L P + +GS +QS +D G +
Sbjct: 209 QIVIFKYVVKEVAEKHGLTATFMPKPFFGDNGSGMHVHQSLWDKDGGNLFADEDGYAGLS 268
Query: 285 -EIEKAIDKLSKQHLRHIQAYDPKQGKDNERRLTGKHETSSIHDFSAGVANRGASIRIPR 343
I + K P N + G + + GV NR AS+RIP
Sbjct: 269 ETALHFIGGILKHAPALTAITAP---TVNSYKRLGVPYEWAPTYIAWGVRNRSASVRIP- 324
Query: 344 DCAEQKKGYLEDRRVANRGASIRIPRDCAEQKKGYLEDRRPSSNCDPYSVTEALI 398
G + R+ E R P + +PY A++
Sbjct: 325 -------------ASGANGKARRV------------EFRVPDPDANPYLAFAAIL 354
>gnl|CDD|217811 pfam03951, Gln-synt_N, Glutamine synthetase, beta-Grasp domain.
Length = 84
Score = 46.0 bits (110), Expect = 1e-06
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 4 WNYDGSST-YQSEGSNSDTFLHPV--AIFKDPFR--LGNNILM 41
+DGSS + + SD +L P + DPFR G +
Sbjct: 35 IGFDGSSIEGFAPINESDMYLKPDPSTAYIDPFRPDPGKTARV 77
>gnl|CDD|216197 pfam00926, DHBP_synthase, 3,4-dihydroxy-2-butanone 4-phosphate
synthase. 3,4-Dihydroxy-2-butanone 4-phosphate is
biosynthesised from ribulose 5-phosphate and serves as
the biosynthetic precursor for the xylene ring of
riboflavin. Sometimes found as a bifunctional enzyme
with pfam00925.
Length = 193
Score = 33.2 bits (77), Expect = 0.15
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 52 AAMNKTVLDKYLALPVPADKIQATY-----IWID--GTGEGIRAKDRTLT 94
A+ + D+ L LP D+ + + +D GT GI A DR LT
Sbjct: 53 VALTEERADR-LGLPPMVDRNTDRFGTAFTVSVDAKGTTTGISAADRALT 101
>gnl|CDD|152622 pfam12187, VirArc_Nuclease, Viral/Archaeal nuclease. This family
of proteins is found in archaea and viruses. Proteins in
this family are typically between 211 and 244 amino
acids in length. These proteins are nucleases from
fusseloviruses and sulfolobus archaea.
Length = 190
Score = 30.5 bits (68), Expect = 1.0
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 104 PDQVYYLIMSHGVLGNSPNAAMNKTVLDKY-LALPVPADKIQATYIWIDGTG 154
VY G L N N K + DKY L L V A +WID TG
Sbjct: 45 DFDVYIRRTGVGTLTNVINEDYYKGLQDKYDLTLYVKAKDRYYPLLWIDITG 96
>gnl|CDD|234109 TIGR03105, gln_synth_III, glutamine synthetase, type III. This
family consists of the type III isozyme of glutamine
synthetase, originally described in Rhizobium meliloti,
where types I and II also occur.
Length = 435
Score = 30.4 bits (69), Expect = 2.0
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 6/39 (15%)
Query: 360 NRGASIRIPRDCAEQKKGYLEDRRPSSNCDPYSVTEALI 398
NR +RIP G E R +PY A++
Sbjct: 315 NRTHMVRIP------DPGRFELRLADGAANPYLAQAAIL 347
>gnl|CDD|215805 pfam00227, Proteasome, Proteasome subunit. The proteasome is a
multisubunit structure that degrades proteins. Protein
degradation is an essential component of regulation
because proteins can become misfolded, damaged, or
unnecessary. Proteasomes and their homologues vary
greatly in complexity: from HslV (heat shock locus v),
which is encoded by 1 gene in bacteria, to the
eukaryotic 20S proteasome, which is encoded by more than
14 genes. Recently evidence of two novel groups of
bacterial proteasomes was proposed. The first is Anbu,
which is sparsely distributed among cyanobacteria and
proteobacteria. The second is call beta-proteobacteria
proteasome homologue (BPH).
Length = 188
Score = 29.5 bits (67), Expect = 2.3
Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 32/99 (32%)
Query: 168 RKGPYYCGVGANKVYARDIVEAHY----RACLYAGIEISGTNAEGPYYCGVGANKVYARD 223
+ PY ++ A Y LY I+ SG+ E +G+ YA
Sbjct: 99 GRRPYGVS----------LLIAGYDEDGGPHLY-SIDPSGSVIE-YKATAIGSGSQYAYG 146
Query: 224 IVEAHYRA-------------CLYAGIE---ISGTNAEV 246
+E Y+ L IE +SG N EV
Sbjct: 147 FLEKLYKPDMTLEEAVELAVKALKEAIERDALSGGNIEV 185
>gnl|CDD|153095 cd04706, PLA2_plant, PLA2_plant: Plant-specific sub-family of
Phospholipase A2, a super-family of secretory and
cytosolic enzymes; the latter are either Ca dependent or
Ca independent. Enzymatically active PLA2 cleaves the
sn-2 position of the glycerol backbone of phospholipids;
secreted PLA2s have also been found to specifically bind
to a variety of soluble and membrane proteins in
mammals, including receptors. As a toxin, PLA2 is a
potent presynaptic neurotoxin which blocks nerve
terminals by binding to the nerve membrane and
hydrolyzing stable membrane lipids. The products of the
hydrolysis cannot form bilayers leading to a change in
membrane conformation and ultimately to a block in the
release of neurotransmitters. PLA2 may form dimers or
oligomers. This sub-family does not appear to have a
conserved active site and metal-binding loop.
Length = 117
Score = 28.6 bits (64), Expect = 2.6
Identities = 10/22 (45%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 156 GIRAKCSQLPLLRKGPYYCGVG 177
CS P LR G YCG G
Sbjct: 11 CESYFCSGPPFLRYG-KYCGPG 31
>gnl|CDD|233073 TIGR00653, GlnA, glutamine synthetase, type I. Alternate name:
glutamate--ammonia ligase. This model represents the
dodecameric form, which can be subdivided into 1-alpha
and 1-beta forms. The phylogeny of the 1-alpha and
1-beta forms appears polyphyletic. E. coli,
Synechocystis PCC6803, Aquifex aeolicus, and the
crenarcheon Sulfolobus acidocaldarius have form 1-beta,
while Bacillus subtilis, Thermotoga maritima, and
various euryarchaea has form 1-alpha. The 1-beta
dodecamer from the crenarcheon Sulfolobus acidocaldarius
differs from that in E. coli in that it is not regulated
by adenylylation [Amino acid biosynthesis, Glutamate
family].
Length = 459
Score = 29.2 bits (66), Expect = 4.6
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 360 NRGASIRIPRDCAEQKKGY-LEDRRPSSNCDPY 391
NR A IRIP + K +E R P + +PY
Sbjct: 330 NRSALIRIP--ASGNPKAKRIEFRFPDPSANPY 360
>gnl|CDD|181884 PRK09469, glnA, glutamine synthetase; Provisional.
Length = 469
Score = 28.6 bits (64), Expect = 6.3
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 360 NRGASIRIPRDCAEQKKGYLEDRRPSSNCDPYSVTEALI 398
NR ASIRIP A K +E R P +PY AL+
Sbjct: 339 NRSASIRIPV-VASPKARRIEVRFPDPAANPYLCFAALL 376
>gnl|CDD|204554 pfam10791, F1F0-ATPsyn_F, Mitochondrial F1-F0 ATP synthase subunit
F of fungi. The membrane bound F1-FO-type H+ ATP
synthase of mitochondria catalyzes the terminal step in
oxidative respiration converting the generation of the
electrochemical gradient into ATP for cellular
biosynthesis. The general structure and the core
subunits of the enzyme are highly conserved in both
prokaryotic and eukaryotic organisms.
Length = 93
Score = 27.0 bits (60), Expect = 6.6
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 42 SHGVLGNSPNAAMNKTVLDKYLALPV-PADKIQATYIWIDGTGEGIRAKDRTLTGVVKNV 100
S LG++PNA V+ Y LP PA + TG R K + G KN
Sbjct: 17 SPKALGSAPNAKRMARVVSFYKKLPQGPAPAKK-------KTGLLGRYKAKYFDG--KNA 67
Query: 101 SGRP 104
SG+P
Sbjct: 68 SGKP 71
>gnl|CDD|223186 COG0108, RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase
[Coenzyme metabolism].
Length = 203
Score = 27.9 bits (63), Expect = 7.3
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Query: 52 AAMNKTVLDKYLALPVPADKIQATY-----IWID--GTGEGIRAKDRTLT 94
A+ + + L LP D + + +D T GI A DR LT
Sbjct: 58 VALTEERAKR-LGLPPMVDNNTDAHGTAFTVSVDARETTTGISAADRALT 106
>gnl|CDD|214843 smart00832, C8, This domain contains 8 conserved cysteine residues.
Not all of the conserved cysteines have been included
in the alignment model. It is found in disease-related
proteins including von Willebrand factor, Alpha
tectorin, Zonadhesin and Mucin.
Length = 76
Score = 26.1 bits (58), Expect = 8.0
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 13/54 (24%)
Query: 188 EAHYRACLYAGIEISGTNAEGPYYCGVGANKVYARDIVEAHYRACLYAGIEISG 241
E + C+Y C G + D + A+ AC AG+ IS
Sbjct: 28 EPFFENCVYD-------------TCACGGDCECLCDALAAYAAACAEAGVCISP 68
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.410
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,735,886
Number of extensions: 2009581
Number of successful extensions: 1474
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1462
Number of HSP's successfully gapped: 39
Length of query: 405
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 306
Effective length of database: 6,546,556
Effective search space: 2003246136
Effective search space used: 2003246136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.9 bits)