RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10062
         (405 letters)



>d1tdja2 d.58.18.2 (A:336-423) Allosteric threonine deaminase
           C-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 88

 Score = 26.7 bits (59), Expect = 1.6
 Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 31/90 (34%)

Query: 217 NKVYARDIVEAHYR------ACLYAGIEISGTNAEVMPSQWEFQDIAKCQDLPIWNYDGS 270
             +  R + E +YR      AC++ G+ +S    E      E   +       + +    
Sbjct: 22  QLLGGRSVTEFNYRFADAKNACIFVGVRLSRGLEER----KEILQMLNDGGYSVVDLSD- 76

Query: 271 STYQSEMREDNGIIEIEKAIDKLSKQHLRH 300
                               D+++K H+R+
Sbjct: 77  --------------------DEMAKLHVRY 86


>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p)
           {Escherichia coli [TaxId: 562]}
          Length = 99

 Score = 25.8 bits (57), Expect = 3.8
 Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 6/35 (17%)

Query: 276 EMREDNGIIEIEKAIDKLSKQHLRHIQAYDPKQGK 310
            + +  GI+E E AI       + ++  ++   GK
Sbjct: 48  ALNQPGGIVEKEAAI------QVSNVAIFNAATGK 76


>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 116

 Score = 25.5 bits (55), Expect = 6.4
 Identities = 9/74 (12%), Positives = 19/74 (25%)

Query: 213 GVGANKVYARDIVEAHYRACLYAGIEISGTNAEVMPSQWEFQDIAKCQDLPIWNYDGSST 272
           G   N     D+V   Y   L  G             +   + ++    +          
Sbjct: 11  GDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEA 70

Query: 273 YQSEMREDNGIIEI 286
             +  + +   +EI
Sbjct: 71  LLTMSKGEKARLEI 84


>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 74

 Score = 24.4 bits (53), Expect = 7.2
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 146 TYIWIDGTGEGIRAKCSQLPLLR-----KGPYYCGVGANKVYARDIVEAHYRAC 194
           +  W++GT   + +  ++L L +     +G Y C            V+ HYR C
Sbjct: 19  SITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKESTVQVHYRMC 72


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0700    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,568,531
Number of extensions: 75385
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 4
Length of query: 405
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 318
Effective length of database: 1,213,086
Effective search space: 385761348
Effective search space used: 385761348
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.6 bits)