BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10063
(894 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 160 bits (406), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 116/201 (57%), Gaps = 26/201 (12%)
Query: 398 EPVVKMQVTDQSAKITSLLWGNLDQYIITGHAKGDICTWDLRMGRE-LESISGHAKEPIN 456
EP+ K+ + T W +YII GH G I +D+ E ++SI H K
Sbjct: 164 EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEK---- 219
Query: 457 DMQFSKDATMFITASHSQAVEPINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT 516
I+DMQFS D T FIT+S+D + L Q+LK Y T
Sbjct: 220 ---------------------SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYET 258
Query: 517 ERPVNSAALSPILPHVVLGGGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPI 576
+ P+N+A ++P+ ++LGGGQEA++VTTTS GKF+ARFYH IFEEE R++GHFGP+
Sbjct: 259 DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPL 318
Query: 577 NSLAFHPDGKSYASGGEDGFL 597
N++A P G SYASGGEDGF+
Sbjct: 319 NTVAISPQGTSYASGGEDGFI 339
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 54/63 (85%)
Query: 823 GKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFVRLHTFDQAYFDYT 882
GKF+ARFYH IFEEE R++GHFGP+N++A P G SYASGGEDGF+RLH F+++YFD+
Sbjct: 293 GKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFK 352
Query: 883 FDI 885
+D+
Sbjct: 353 YDV 355
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 85/179 (47%), Gaps = 30/179 (16%)
Query: 424 IITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASH----------- 472
I++G + WD++ G+ L+++ H+ +P++ + F++D ++ +++S+
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 473 SQAVE--------PINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTTERPVNSAA 524
Q ++ P++ ++FS + + A+ D+T KL+ + LKTYT +
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC- 245
Query: 525 LSPILPHVVLGGGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHP 583
I + + GG+ V+ + + ++L +E +++GH + S A HP
Sbjct: 246 ---IFANFSVTGGKWI--VSGSEDNL----VYIWNLQTKEIVQKLQGHTDVVISTACHP 295
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/136 (18%), Positives = 62/136 (45%), Gaps = 21/136 (15%)
Query: 412 ITSLLWGNLDQYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITAS 471
I+ + W + +++ + WD+ G+ L+++ GH+ + F+ + + ++ S
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGS 132
Query: 472 HSQAV------------------EPINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKT 513
++V +P++ + F++D ++ +++S D +++ T Q LKT
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 514 YTTER--PVNSAALSP 527
+ PV+ SP
Sbjct: 193 LIDDDNPPVSFVKFSP 208
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 479 INDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT-ERPVNSAALSPILPHVVLGGG 537
I+D+ +S D+ + ++AS D T K++ + LKT V +P +V G
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 538 QEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL 597
E+ R + + + + H P++++ F+ DG S DG
Sbjct: 134 DES--------------VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 83/182 (45%), Gaps = 36/182 (19%)
Query: 424 IITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASH----------- 472
I++G + WD++ G+ L+++ H+ +P++ + F++D ++ +++S+
Sbjct: 118 IVSGSFDESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 176
Query: 473 SQAVE--------PINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYT---TERPVN 521
Q ++ P++ ++FS + + A+ D+T KL+ + LKTYT E+
Sbjct: 177 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 236
Query: 522 SAALSPILPHVVLGGGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAF 581
A S ++ G ++ ++L +E +++GH + S A
Sbjct: 237 FANFSVTGGKWIVSGSEDNL-------------VYIWNLQTKEIVQKLQGHTDVVISTAC 283
Query: 582 HP 583
HP
Sbjct: 284 HP 285
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/136 (18%), Positives = 62/136 (45%), Gaps = 21/136 (15%)
Query: 412 ITSLLWGNLDQYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITAS 471
I+ + W + +++ + WD+ G+ L+++ GH+ + F+ + + ++ S
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGS 122
Query: 472 HSQAV------------------EPINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKT 513
++V +P++ + F++D ++ +++S D +++ T Q LKT
Sbjct: 123 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 182
Query: 514 YTTER--PVNSAALSP 527
+ PV+ SP
Sbjct: 183 LIDDDNPPVSFVKFSP 198
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 479 INDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT-ERPVNSAALSPILPHVVLGGG 537
I+D+ +S D+ + ++AS D T K++ + LKT V +P +V G
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 123
Query: 538 QEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL 597
E+ R + + + + H P++++ F+ DG S DG
Sbjct: 124 DES--------------VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 169
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 83/182 (45%), Gaps = 36/182 (19%)
Query: 424 IITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASH----------- 472
I++G + WD++ G+ L+++ H+ +P++ + F++D ++ +++S+
Sbjct: 123 IVSGSFDESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 181
Query: 473 SQAVE--------PINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYT---TERPVN 521
Q ++ P++ ++FS + + A+ D+T KL+ + LKTYT E+
Sbjct: 182 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 241
Query: 522 SAALSPILPHVVLGGGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAF 581
A S ++ G ++ ++L +E +++GH + S A
Sbjct: 242 FANFSVTGGKWIVSGSEDNL-------------VYIWNLQTKEIVQKLQGHTDVVISTAC 288
Query: 582 HP 583
HP
Sbjct: 289 HP 290
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/136 (18%), Positives = 62/136 (45%), Gaps = 21/136 (15%)
Query: 412 ITSLLWGNLDQYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITAS 471
I+ + W + +++ + WD+ G+ L+++ GH+ + F+ + + ++ S
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGS 127
Query: 472 HSQAV------------------EPINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKT 513
++V +P++ + F++D ++ +++S D +++ T Q LKT
Sbjct: 128 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 187
Query: 514 YTTER--PVNSAALSP 527
+ PV+ SP
Sbjct: 188 LIDDDNPPVSFVKFSP 203
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 479 INDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT-ERPVNSAALSPILPHVVLGGG 537
I+D+ +S D+ + ++AS D T K++ + LKT V +P +V G
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 128
Query: 538 QEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL 597
E+ R + + + + H P++++ F+ DG S DG
Sbjct: 129 DES--------------VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 174
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 83/182 (45%), Gaps = 36/182 (19%)
Query: 424 IITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASH----------- 472
I++G + WD++ G+ L+++ H+ +P++ + F++D ++ +++S+
Sbjct: 139 IVSGSFDESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 197
Query: 473 SQAVE--------PINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYT---TERPVN 521
Q ++ P++ ++FS + + A+ D+T KL+ + LKTYT E+
Sbjct: 198 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 257
Query: 522 SAALSPILPHVVLGGGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAF 581
A S ++ G ++ ++L +E +++GH + S A
Sbjct: 258 FANFSVTGGKWIVSGSEDNL-------------VYIWNLQTKEIVQKLQGHTDVVISTAC 304
Query: 582 HP 583
HP
Sbjct: 305 HP 306
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/136 (18%), Positives = 62/136 (45%), Gaps = 21/136 (15%)
Query: 412 ITSLLWGNLDQYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITAS 471
I+ + W + +++ + WD+ G+ L+++ GH+ + F+ + + ++ S
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGS 143
Query: 472 HSQAV------------------EPINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKT 513
++V +P++ + F++D ++ +++S D +++ T Q LKT
Sbjct: 144 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 203
Query: 514 YTTER--PVNSAALSP 527
+ PV+ SP
Sbjct: 204 LIDDDNPPVSFVKFSP 219
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 479 INDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT-ERPVNSAALSPILPHVVLGGG 537
I+D+ +S D+ + ++AS D T K++ + LKT V +P +V G
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 144
Query: 538 QEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL 597
E+ R + + + + H P++++ F+ DG S DG
Sbjct: 145 DES--------------VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 190
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 83/182 (45%), Gaps = 36/182 (19%)
Query: 424 IITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASH----------- 472
I++G + WD++ G+ L+++ H+ +P++ + F++D ++ +++S+
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 473 SQAVE--------PINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYT---TERPVN 521
Q ++ P++ ++FS + + A+ D+T KL+ + LKTYT E+
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 522 SAALSPILPHVVLGGGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAF 581
A S ++ G ++ ++L +E +++GH + S A
Sbjct: 244 FANFSVTGGKWIVSGSEDNL-------------VYIWNLQTKEIVQKLQGHTDVVISTAC 290
Query: 582 HP 583
HP
Sbjct: 291 HP 292
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/136 (18%), Positives = 62/136 (45%), Gaps = 21/136 (15%)
Query: 412 ITSLLWGNLDQYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITAS 471
I+ + W + +++ + WD+ G+ L+++ GH+ + F+ + + ++ S
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGS 129
Query: 472 HSQAV------------------EPINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKT 513
++V +P++ + F++D ++ +++S D +++ T Q LKT
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 514 YTTER--PVNSAALSP 527
+ PV+ SP
Sbjct: 190 LIDDDNPPVSFVKFSP 205
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 479 INDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT-ERPVNSAALSPILPHVVLGGG 537
I+D+ +S D+ + ++AS D T K++ + LKT V +P +V G
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 538 QEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL 597
E+ V K GK + H P++++ F+ DG S DG
Sbjct: 131 DES--VRIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 83/182 (45%), Gaps = 36/182 (19%)
Query: 424 IITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASH----------- 472
I++G + WD++ G+ L+++ H+ +P++ + F++D ++ +++S+
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 473 SQAVE--------PINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYT---TERPVN 521
Q ++ P++ ++FS + + A+ D+T KL+ + LKTYT E+
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240
Query: 522 SAALSPILPHVVLGGGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAF 581
A S ++ G ++ ++L +E +++GH + S A
Sbjct: 241 FANFSVTGGKWIVSGSEDNL-------------VYIWNLQTKEIVQKLQGHTDVVISTAC 287
Query: 582 HP 583
HP
Sbjct: 288 HP 289
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/136 (18%), Positives = 62/136 (45%), Gaps = 21/136 (15%)
Query: 412 ITSLLWGNLDQYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITAS 471
I+ + W + +++ + WD+ G+ L+++ GH+ + F+ + + ++ S
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGS 126
Query: 472 HSQAV------------------EPINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKT 513
++V +P++ + F++D ++ +++S D +++ T Q LKT
Sbjct: 127 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186
Query: 514 YTTER--PVNSAALSP 527
+ PV+ SP
Sbjct: 187 LIDDDNPPVSFVKFSP 202
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 479 INDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT-ERPVNSAALSPILPHVVLGGG 537
I+D+ +S D+ + ++AS D T K++ + LKT V +P +V G
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 538 QEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL 597
E+ R + + + + H P++++ F+ DG S DG
Sbjct: 128 DES--------------VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 83/181 (45%), Gaps = 34/181 (18%)
Query: 424 IITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASH----------- 472
I++G + WD++ G+ L+++ H+ +P++ + F++D ++ +++S+
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 473 SQAVE--------PINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTTERPVNSAA 524
Q ++ P++ ++FS + + A+ D+T KL+ + LKTYT +
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC- 245
Query: 525 LSPILPHVVLGGGQEAREVTTTSTKVGKFDARFY--HLIFEEEFARIKGHFGPINSLAFH 582
I + + GG+ G D Y +L +E +++GH + S A H
Sbjct: 246 ---IFANFSVTGGKWIVS--------GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACH 294
Query: 583 P 583
P
Sbjct: 295 P 295
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/136 (18%), Positives = 62/136 (45%), Gaps = 21/136 (15%)
Query: 412 ITSLLWGNLDQYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITAS 471
I+ + W + +++ + WD+ G+ L+++ GH+ + F+ + + ++ S
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGS 132
Query: 472 HSQAV------------------EPINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKT 513
++V +P++ + F++D ++ +++S D +++ T Q LKT
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 514 YTTER--PVNSAALSP 527
+ PV+ SP
Sbjct: 193 LIDDDNPPVSFVKFSP 208
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 479 INDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT-ERPVNSAALSPILPHVVLGGG 537
I+D+ +S D+ + ++AS D T K++ + LKT V +P +V G
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 538 QEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL 597
E+ R + + + + H P++++ F+ DG S DG
Sbjct: 134 DES--------------VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 83/182 (45%), Gaps = 36/182 (19%)
Query: 424 IITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASH----------- 472
I++G + WD++ G+ L+++ H+ +P++ + F++D ++ +++S+
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 473 SQAVE--------PINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYT---TERPVN 521
Q ++ P++ ++FS + + A+ D+T KL+ + LKTYT E+
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 522 SAALSPILPHVVLGGGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAF 581
A S ++ G ++ ++L +E +++GH + S A
Sbjct: 244 FANFSVTGGKWIVSGSEDNL-------------VYIWNLQTKEIVQKLQGHTDVVISTAC 290
Query: 582 HP 583
HP
Sbjct: 291 HP 292
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/173 (17%), Positives = 76/173 (43%), Gaps = 32/173 (18%)
Query: 386 MSPAARKLATN-AEPVVKMQ----------VTDQSAKITSLLWGNLDQYIITGHAKGDIC 434
SP LA++ A+ ++K+ ++ I+ + W + +++ +
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 93
Query: 435 TWDLRMGRELESISGHAKEPINDMQFSKDATMFITASHSQAV------------------ 476
WD+ G+ L+++ GH+ + F+ + + ++ S ++V
Sbjct: 94 IWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 477 EPINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTTER--PVNSAALSP 527
+P++ + F++D ++ +++S D +++ T Q LKT + PV+ SP
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 479 INDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT-ERPVNSAALSPILPHVVLGGG 537
I+D+ +S D+ + ++AS D T K++ + LKT V +P +V G
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 538 QEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL 597
E+ R + + + + H P++++ F+ DG S DG
Sbjct: 131 DES--------------VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 83/182 (45%), Gaps = 36/182 (19%)
Query: 424 IITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASH----------- 472
I++G + WD++ G+ L+++ H+ +P++ + F++D ++ +++S+
Sbjct: 121 IVSGSFDESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 179
Query: 473 SQAVE--------PINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYT---TERPVN 521
Q ++ P++ ++FS + + A+ D+T KL+ + LKTYT E+
Sbjct: 180 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 239
Query: 522 SAALSPILPHVVLGGGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAF 581
A S ++ G ++ ++L +E +++GH + S A
Sbjct: 240 FANFSVTGGKWIVSGSEDNL-------------VYIWNLQTKEIVQKLQGHTDVVISTAC 286
Query: 582 HP 583
HP
Sbjct: 287 HP 288
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/136 (18%), Positives = 62/136 (45%), Gaps = 21/136 (15%)
Query: 412 ITSLLWGNLDQYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITAS 471
I+ + W + +++ + WD+ G+ L+++ GH+ + F+ + + ++ S
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGS 125
Query: 472 HSQAV------------------EPINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKT 513
++V +P++ + F++D ++ +++S D +++ T Q LKT
Sbjct: 126 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 185
Query: 514 YTTER--PVNSAALSP 527
+ PV+ SP
Sbjct: 186 LIDDDNPPVSFVKFSP 201
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 479 INDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT-ERPVNSAALSPILPHVVLGGG 537
I+D+ +S D+ + ++AS D T K++ + LKT V +P +V G
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 126
Query: 538 QEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL 597
E+ R + + + + H P++++ F+ DG S DG
Sbjct: 127 DES--------------VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 172
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 83/181 (45%), Gaps = 34/181 (18%)
Query: 424 IITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASH----------- 472
I++G + WD++ G+ L+++ H+ +P++ + F++D ++ +++S+
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 473 SQAVE--------PINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTTERPVNSAA 524
Q ++ P++ ++FS + + A+ D+T KL+ + LKTYT +
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC- 239
Query: 525 LSPILPHVVLGGGQEAREVTTTSTKVGKFDARFY--HLIFEEEFARIKGHFGPINSLAFH 582
I + + GG+ G D Y +L +E +++GH + S A H
Sbjct: 240 ---IFANFSVTGGKWIVS--------GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACH 288
Query: 583 P 583
P
Sbjct: 289 P 289
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/136 (18%), Positives = 62/136 (45%), Gaps = 21/136 (15%)
Query: 412 ITSLLWGNLDQYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITAS 471
I+ + W + +++ + WD+ G+ L+++ GH+ + F+ + + ++ S
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGS 126
Query: 472 HSQAV------------------EPINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKT 513
++V +P++ + F++D ++ +++S D +++ T Q LKT
Sbjct: 127 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186
Query: 514 YTTER--PVNSAALSP 527
+ PV+ SP
Sbjct: 187 LIDDDNPPVSFVKFSP 202
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 479 INDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT-ERPVNSAALSPILPHVVLGGG 537
I+D+ +S D+ + ++AS D T K++ + LKT V +P +V G
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 538 QEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL 597
E+ R + + + + H P++++ F+ DG S DG
Sbjct: 128 DES--------------VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 83/182 (45%), Gaps = 36/182 (19%)
Query: 424 IITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASH----------- 472
I++G + WD++ G+ L+++ H+ +P++ + F++D ++ +++S+
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 473 SQAVE--------PINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYT---TERPVN 521
Q ++ P++ ++FS + + A+ D+T KL+ + LKTYT E+
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 522 SAALSPILPHVVLGGGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAF 581
A S ++ G ++ ++L +E +++GH + S A
Sbjct: 244 FANFSVTGGKWIVSGSEDNL-------------VYIWNLQTKEIVQKLQGHTDVVISTAC 290
Query: 582 HP 583
HP
Sbjct: 291 HP 292
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/136 (18%), Positives = 62/136 (45%), Gaps = 21/136 (15%)
Query: 412 ITSLLWGNLDQYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITAS 471
I+ + W + +++ + WD+ G+ L+++ GH+ + F+ + + ++ S
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGS 129
Query: 472 HSQAV------------------EPINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKT 513
++V +P++ + F++D ++ +++S D +++ T Q LKT
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 514 YTTER--PVNSAALSP 527
+ PV+ SP
Sbjct: 190 LIDDDNPPVSFVKFSP 205
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 479 INDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT-ERPVNSAALSPILPHVVLGGG 537
I+D+ +S D+ + ++AS D T K++ + LKT V +P +V G
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 538 QEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL 597
E+ R + + + + H P++++ F+ DG S DG
Sbjct: 131 DES--------------VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 83/182 (45%), Gaps = 36/182 (19%)
Query: 424 IITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASH----------- 472
I++G + WD++ G+ L+++ H+ +P++ + F++D ++ +++S+
Sbjct: 127 IVSGSFDESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 185
Query: 473 SQAVE--------PINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYT---TERPVN 521
Q ++ P++ ++FS + + A+ D+T KL+ + LKTYT E+
Sbjct: 186 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 245
Query: 522 SAALSPILPHVVLGGGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAF 581
A S ++ G ++ ++L +E +++GH + S A
Sbjct: 246 FANFSVTGGKWIVSGSEDNL-------------VYIWNLQTKEIVQKLQGHTDVVISTAC 292
Query: 582 HP 583
HP
Sbjct: 293 HP 294
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/136 (18%), Positives = 62/136 (45%), Gaps = 21/136 (15%)
Query: 412 ITSLLWGNLDQYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITAS 471
I+ + W + +++ + WD+ G+ L+++ GH+ + F+ + + ++ S
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGS 131
Query: 472 HSQAV------------------EPINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKT 513
++V +P++ + F++D ++ +++S D +++ T Q LKT
Sbjct: 132 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 191
Query: 514 YTTER--PVNSAALSP 527
+ PV+ SP
Sbjct: 192 LIDDDNPPVSFVKFSP 207
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 479 INDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT-ERPVNSAALSPILPHVVLGGG 537
I+D+ +S D+ + ++AS D T K++ + LKT V +P +V G
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 132
Query: 538 QEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL 597
E+ R + + + + H P++++ F+ DG S DG
Sbjct: 133 DES--------------VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 178
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 83/181 (45%), Gaps = 34/181 (18%)
Query: 424 IITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASH----------- 472
I++G + WD++ G+ L+++ H+ +P++ + F++D ++ +++S+
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 473 SQAVE--------PINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTTERPVNSAA 524
Q ++ P++ ++FS + + A+ D+T KL+ + LKTYT +
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC- 245
Query: 525 LSPILPHVVLGGGQEAREVTTTSTKVGKFDARFY--HLIFEEEFARIKGHFGPINSLAFH 582
I + + GG+ G D Y +L +E +++GH + S A H
Sbjct: 246 ---IFANFSVTGGKWIVS--------GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACH 294
Query: 583 P 583
P
Sbjct: 295 P 295
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/136 (18%), Positives = 62/136 (45%), Gaps = 21/136 (15%)
Query: 412 ITSLLWGNLDQYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITAS 471
I+ + W + +++ + WD+ G+ L+++ GH+ + F+ + + ++ S
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGS 132
Query: 472 HSQAV------------------EPINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKT 513
++V +P++ + F++D ++ +++S D +++ T Q LKT
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 514 YTTER--PVNSAALSP 527
+ PV+ SP
Sbjct: 193 LIDDDNPPVSFVKFSP 208
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 479 INDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT-ERPVNSAALSPILPHVVLGGG 537
I+D+ +S D+ + ++AS D T K++ + LKT V +P +V G
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 538 QEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL 597
E+ R + + + + H P++++ F+ DG S DG
Sbjct: 134 DES--------------VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 83/181 (45%), Gaps = 34/181 (18%)
Query: 424 IITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASH----------- 472
I++G + WD++ G+ L+++ H+ +P++ + F++D ++ +++S+
Sbjct: 146 IVSGSFDESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 204
Query: 473 SQAVE--------PINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTTERPVNSAA 524
Q ++ P++ ++FS + + A+ D+T KL+ + LKTYT +
Sbjct: 205 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC- 263
Query: 525 LSPILPHVVLGGGQEAREVTTTSTKVGKFDARFY--HLIFEEEFARIKGHFGPINSLAFH 582
I + + GG+ G D Y +L +E +++GH + S A H
Sbjct: 264 ---IFANFSVTGGKWIVS--------GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACH 312
Query: 583 P 583
P
Sbjct: 313 P 313
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/136 (18%), Positives = 62/136 (45%), Gaps = 21/136 (15%)
Query: 412 ITSLLWGNLDQYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITAS 471
I+ + W + +++ + WD+ G+ L+++ GH+ + F+ + + ++ S
Sbjct: 92 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGS 150
Query: 472 HSQAV------------------EPINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKT 513
++V +P++ + F++D ++ +++S D +++ T Q LKT
Sbjct: 151 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 210
Query: 514 YTTER--PVNSAALSP 527
+ PV+ SP
Sbjct: 211 LIDDDNPPVSFVKFSP 226
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 479 INDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT-ERPVNSAALSPILPHVVLGGG 537
I+D+ +S D+ + ++AS D T K++ + LKT V +P +V G
Sbjct: 92 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 151
Query: 538 QEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL 597
E+ R + + + + H P++++ F+ DG S DG
Sbjct: 152 DES--------------VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 197
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 83/181 (45%), Gaps = 34/181 (18%)
Query: 424 IITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASH----------- 472
I++G + WD++ G+ L+++ H+ +P++ + F++D ++ +++S+
Sbjct: 144 IVSGSFDESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 202
Query: 473 SQAVE--------PINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTTERPVNSAA 524
Q ++ P++ ++FS + + A+ D+T KL+ + LKTYT +
Sbjct: 203 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC- 261
Query: 525 LSPILPHVVLGGGQEAREVTTTSTKVGKFDARFY--HLIFEEEFARIKGHFGPINSLAFH 582
I + + GG+ G D Y +L +E +++GH + S A H
Sbjct: 262 ---IFANFSVTGGKWIVS--------GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACH 310
Query: 583 P 583
P
Sbjct: 311 P 311
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/136 (18%), Positives = 62/136 (45%), Gaps = 21/136 (15%)
Query: 412 ITSLLWGNLDQYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITAS 471
I+ + W + +++ + WD+ G+ L+++ GH+ + F+ + + ++ S
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGS 148
Query: 472 HSQAV------------------EPINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKT 513
++V +P++ + F++D ++ +++S D +++ T Q LKT
Sbjct: 149 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 208
Query: 514 YTTER--PVNSAALSP 527
+ PV+ SP
Sbjct: 209 LIDDDNPPVSFVKFSP 224
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 479 INDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT-ERPVNSAALSPILPHVVLGGG 537
I+D+ +S D+ + ++AS D T K++ + LKT V +P +V G
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 149
Query: 538 QEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL 597
E+ R + + + + H P++++ F+ DG S DG
Sbjct: 150 DES--------------VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 195
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 82/181 (45%), Gaps = 34/181 (18%)
Query: 424 IITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASH----------- 472
I++G + WD++ G L+++ H+ +P++ + F++D ++ +++S+
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 473 SQAVE--------PINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTTERPVNSAA 524
Q ++ P++ ++FS + + A+ D+T KL+ + LKTYT +
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC- 242
Query: 525 LSPILPHVVLGGGQEAREVTTTSTKVGKFDARFY--HLIFEEEFARIKGHFGPINSLAFH 582
I + + GG+ G D Y +L +E +++GH + S A H
Sbjct: 243 ---IFANFSVTGGKWIVS--------GSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACH 291
Query: 583 P 583
P
Sbjct: 292 P 292
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/136 (18%), Positives = 62/136 (45%), Gaps = 21/136 (15%)
Query: 412 ITSLLWGNLDQYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITAS 471
I+ + W + +++ + WD+ G+ L+++ GH+ + F+ + + ++ S
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGS 129
Query: 472 HSQAV------------------EPINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKT 513
++V +P++ + F++D ++ +++S D +++ T Q LKT
Sbjct: 130 FDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 514 YTTER--PVNSAALSP 527
+ PV+ SP
Sbjct: 190 LIDDDNPPVSFVKFSP 205
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 15/120 (12%)
Query: 479 INDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT-ERPVNSAALSPILPHVVLGGG 537
I+D+ +S D+ + ++AS D T K++ + LKT V +P +V G
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 538 QEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL 597
E+ R + + + H P++++ F+ DG S DG
Sbjct: 131 DES--------------VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 37/175 (21%)
Query: 439 RMGRELESISGHAKEPINDMQFSKDATMFITASHSQAVEPIN-----------------D 481
R G+ L++++GH+ + + FS D +AS + V+ N
Sbjct: 127 RNGQLLQTLTGHS-SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG 185
Query: 482 MQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT-ERPVNSAALSPILPHVVLGGGQEA 540
+ FS D +AS D T KL+ + QLL+T T V A SP +
Sbjct: 186 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP-----------DG 233
Query: 541 REVTTTST-KVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGED 594
+ + + S K K R L+ + GH +N +AF PDG++ AS +D
Sbjct: 234 QTIASASDDKTVKLWNRNGQLL-----QTLTGHSSSVNGVAFRPDGQTIASASDD 283
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 72/175 (41%), Gaps = 37/175 (21%)
Query: 439 RMGRELESISGHAKEPINDMQFSKDATMFITASHSQAVEPIN-----------------D 481
R G+ L++++GH+ + + FS D +AS + V+ N
Sbjct: 373 RNGQLLQTLTGHS-SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG 431
Query: 482 MQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT-ERPVNSAALSPILPHVVLGGGQEA 540
+ FS D +AS D T KL+ + QLL+T T V A SP +
Sbjct: 432 VAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP-----------DG 479
Query: 541 REVTTTST-KVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGED 594
+ + + S K K R L+ + GH + +AF PDG++ AS +D
Sbjct: 480 QTIASASDDKTVKLWNRNGQLL-----QTLTGHSSSVRGVAFSPDGQTIASASDD 529
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 70/174 (40%), Gaps = 35/174 (20%)
Query: 439 RMGRELESISGHAKEPINDMQFSKDATMFITASHSQAVEPIN-----------------D 481
R G+ L++++GH+ + + FS D +AS + V+ N
Sbjct: 332 RNGQHLQTLTGHS-SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRG 390
Query: 482 MQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT-ERPVNSAALSPILPHVVLGGGQEA 540
+ FS D +AS D T KL+ + QLL+T T V A SP +
Sbjct: 391 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP----------DDQ 439
Query: 541 REVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGED 594
+ + K K R L+ + GH + +AF PDG++ AS +D
Sbjct: 440 TIASASDDKTVKLWNRNGQLL-----QTLTGHSSSVRGVAFSPDGQTIASASDD 488
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 68/174 (39%), Gaps = 35/174 (20%)
Query: 439 RMGRELESISGHAKEPINDMQFSKDATMFITASHSQAVEPIN-----------------D 481
R G+ L++++GH+ +N + F D +AS + V+ N
Sbjct: 250 RNGQLLQTLTGHS-SSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG 308
Query: 482 MQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTTERPVNSAALSPILPHVVLGGGQEAR 541
+ FS D +AS D T KL+ + + L V A SP + +
Sbjct: 309 VAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSP-----------DGQ 357
Query: 542 EVTTTST-KVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGED 594
+ + S K K R L+ + GH + +AF PDG++ AS +D
Sbjct: 358 TIASASDDKTVKLWNRNGQLL-----QTLTGHSSSVRGVAFSPDGQTIASASDD 406
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 71/175 (40%), Gaps = 37/175 (21%)
Query: 439 RMGRELESISGHAKEPINDMQFSKDATMFITASHSQAVEPIN-----------------D 481
R G+ L++++GH+ + + FS D +AS + V+ N
Sbjct: 414 RNGQLLQTLTGHS-SSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRG 472
Query: 482 MQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT-ERPVNSAALSPILPHVVLGGGQEA 540
+ FS D +AS D T KL+ + QLL+T T V A SP +
Sbjct: 473 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP-----------DG 520
Query: 541 REVTTTST-KVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGED 594
+ + + S K K R L+ + GH + +AF PDG++ AS D
Sbjct: 521 QTIASASDDKTVKLWNRNGQLL-----QTLTGHSSSVWGVAFSPDGQTIASASSD 570
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 841 IKGHFGPINSLAFHPDGKSYASGGEDGFVRL 871
+ GH +N +AF PDG++ AS +D V+L
Sbjct: 258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKL 288
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 836 EEFARIKGHFGPINSLAFHPDGKSYASGGEDGFVRL 871
+E R++ H + +AF PDG++ AS +D V+L
Sbjct: 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKL 42
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 841 IKGHFGPINSLAFHPDGKSYASGGEDGFVRL 871
+ GH + +AF PDG++ AS +D V+L
Sbjct: 94 LTGHSSSVRGVAFSPDGQTIASASDDKTVKL 124
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 841 IKGHFGPINSLAFHPDGKSYASGGEDGFVRL 871
+ GH + +AF PDG++ AS +D V+L
Sbjct: 217 LTGHSSSVRGVAFSPDGQTIASASDDKTVKL 247
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 841 IKGHFGPINSLAFHPDGKSYASGGEDGFVRL 871
+ GH + +AF PDG++ AS +D V+L
Sbjct: 381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKL 411
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 841 IKGHFGPINSLAFHPDGKSYASGGEDGFVRL 871
+ GH + +AF PDG++ AS +D V+L
Sbjct: 463 LTGHSSSVRGVAFSPDGQTIASASDDKTVKL 493
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 841 IKGHFGPINSLAFHPDGKSYASGGEDGFVRL 871
+ GH + +AF PDG++ AS +D V+L
Sbjct: 504 LTGHSSSVRGVAFSPDGQTIASASDDKTVKL 534
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 81/181 (44%), Gaps = 34/181 (18%)
Query: 424 IITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASH----------- 472
I++G + WD++ G L+++ H+ +P++ + F++D ++ +++S+
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 473 SQAVE--------PINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTTERPVNSAA 524
Q ++ P++ ++FS + + A+ D+ KL+ + LKTYT +
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYC- 242
Query: 525 LSPILPHVVLGGGQEAREVTTTSTKVGKFDARFY--HLIFEEEFARIKGHFGPINSLAFH 582
I + + GG+ G D Y +L +E +++GH + S A H
Sbjct: 243 ---IFANFSVTGGKWIVS--------GSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACH 291
Query: 583 P 583
P
Sbjct: 292 P 292
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/136 (18%), Positives = 62/136 (45%), Gaps = 21/136 (15%)
Query: 412 ITSLLWGNLDQYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITAS 471
I+ + W + +++ + WD+ G+ L+++ GH+ + F+ + + ++ S
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGS 129
Query: 472 HSQAV------------------EPINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKT 513
++V +P++ + F++D ++ +++S D +++ T Q LKT
Sbjct: 130 FDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 514 YTTER--PVNSAALSP 527
+ PV+ SP
Sbjct: 190 LIDDDNPPVSFVKFSP 205
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 15/120 (12%)
Query: 479 INDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT-ERPVNSAALSPILPHVVLGGG 537
I+D+ +S D+ + ++AS D T K++ + LKT V +P +V G
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 538 QEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL 597
E+ R + + + H P++++ F+ DG S DG
Sbjct: 131 DES--------------VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 75/193 (38%), Gaps = 51/193 (26%)
Query: 422 QYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASHSQAVEPIND 481
Q+ ++G G++ WDL G GH K+ ++
Sbjct: 443 QFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLS------------------------- 477
Query: 482 MQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTTERP-------VNSAALSP--ILPHV 532
+ FS D ++AS+D T KL+ T YT V+ SP + P +
Sbjct: 478 VAFSLDNRQIVSASRDRTIKLWNTLGEC---KYTISEGGEGHRDWVSCVRFSPNTLQPTI 534
Query: 533 VLGGGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGG 592
V + +V ++L + + + GH G ++++A PDG ASGG
Sbjct: 535 VSASWDKTVKV--------------WNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG 580
Query: 593 EDGFLISNTLSNG 605
+DG ++ L+ G
Sbjct: 581 KDGVVLLWDLAEG 593
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 841 IKGHFGPINSLAFHPDGKSYASGGEDGFVRLHTFDQAYFDYTFDISEEFHC 891
+ GH G ++++A PDG ASGG+DG V L + Y+ + + H
Sbjct: 557 LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHA 607
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 68/181 (37%), Gaps = 49/181 (27%)
Query: 422 QYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASHSQAVEPIND 481
Q+ ++G G + WDL G GH K+ ++
Sbjct: 76 QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS------------------------- 110
Query: 482 MQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTTERPVNSAALSPIL-------PHVVL 534
+ FS D ++ S+D T KL+ T + YT + +S +S + P +V
Sbjct: 111 VAFSSDNRQIVSGSRDKTIKLWNTLG---VCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 167
Query: 535 GGGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGED 594
G + +V + + H+ GH G +N++ PDG ASGG+D
Sbjct: 168 CGWDKLVKVW----NLANCKLKTNHI----------GHTGYLNTVTVSPDGSLCASGGKD 213
Query: 595 G 595
G
Sbjct: 214 G 214
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 843 GHFGPINSLAFHPDGKSYASGGEDGFVRLHTFDQAYFDYTFD 884
GH G +N++ PDG ASGG+DG L ++ YT D
Sbjct: 190 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD 231
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 68/181 (37%), Gaps = 49/181 (27%)
Query: 422 QYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASHSQAVEPIND 481
Q+ ++G G + WDL G GH K+ ++
Sbjct: 99 QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS------------------------- 133
Query: 482 MQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTTERPVNSAALSPIL-------PHVVL 534
+ FS D ++ S+D T KL+ T + YT + +S +S + P +V
Sbjct: 134 VAFSSDNRQIVSGSRDKTIKLWNTLG---VCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 190
Query: 535 GGGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGED 594
G + +V + + H+ GH G +N++ PDG ASGG+D
Sbjct: 191 CGWDKLVKVW----NLANCKLKTNHI----------GHTGYLNTVTVSPDGSLCASGGKD 236
Query: 595 G 595
G
Sbjct: 237 G 237
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 843 GHFGPINSLAFHPDGKSYASGGEDGFVRLHTFDQAYFDYTFD 884
GH G +N++ PDG ASGG+DG L ++ YT D
Sbjct: 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD 254
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 86/244 (35%), Gaps = 48/244 (19%)
Query: 387 SPAARKLATNAEP---VVKMQVTDQSAKITSLLWGNLDQYIITGHAKGDICTWDLRMGRE 443
S A + A + P V + S K+ SL W +I++ G + W+ ++
Sbjct: 41 SKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK 100
Query: 444 LESISGHAKEPINDMQFSKDATMFITASHSQAVEPIN-DMQFSKDATM------------ 490
+I H + + F+ + A N Q +D M
Sbjct: 101 THAIKLHCPW-VMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY 159
Query: 491 -------------FITASKDHTAKLFTTHDRQLLKTYTTERP------VNSAALSPILPH 531
IT S D T L+ Q + + +E P V S +++ + +
Sbjct: 160 ASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNAN 219
Query: 532 VVLGGGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASG 591
+ + G + T V +D R I GH G INS+ F PDG+ + +G
Sbjct: 220 MFISG--------SCDTTVRLWDLR----ITSRAVRTYHGHEGDINSVKFFPDGQRFGTG 267
Query: 592 GEDG 595
+DG
Sbjct: 268 SDDG 271
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 828 RFYHLIFEEEFARI-KGHFGPINSLAFHPDGKSYASGGEDGFVRL 871
R + L R GH G INS+ F PDG+ + +G +DG RL
Sbjct: 231 RLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRL 275
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/196 (18%), Positives = 75/196 (38%), Gaps = 32/196 (16%)
Query: 419 NLDQYIITGHAKGDICTWDLRMGRELESISGHAKEPIN-DMQFSKDATMFITAS------ 471
N D I+T G WD+ G+ L+S GH + + D+ S+ F++
Sbjct: 164 NSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAM 223
Query: 472 -----HSQAVEP-------INDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTTERP 519
Q V+ +N +++ F + S D T +L+ + + Y+ E
Sbjct: 224 VWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESI 283
Query: 520 V-NSAALSPILPHVVLGGGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINS 578
+ ++++ L +L G + + ++ + + GH +++
Sbjct: 284 IFGASSVDFSLSGRLLFAGYN------------DYTINVWDVLKGSRVSILFGHENRVST 331
Query: 579 LAFHPDGKSYASGGED 594
L PDG ++ SG D
Sbjct: 332 LRVSPDGTAFCSGSWD 347
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 844 HFGPINSLAFHPDGKSYASGGEDGFVRLH 872
H +NS+ ++P G ++ASG +D RL+
Sbjct: 239 HESDVNSVRYYPSGDAFASGSDDATCRLY 267
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 78/200 (39%), Gaps = 33/200 (16%)
Query: 415 LLWGNLDQYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASHSQ 474
LL + D+ +I+ GD D + G + S GH+ + D + D ++AS +
Sbjct: 33 LLSASRDKTLISWKLTGD----DQKFGVPVRSFKGHS-HIVQDCTLTADGAYALSASWDK 87
Query: 475 AVE------------------PINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT 516
+ + + K A+M I+ S+D T K++T + L
Sbjct: 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGH 147
Query: 517 ERPVNSAALSPILPHVVLGGGQEAREVTTTSTKVGKFD-ARFYHLIFEEEFARIKGHFGP 575
V+ + P ++A + + T G + ++L + A GH
Sbjct: 148 NDWVSQVRVVP---------NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN 198
Query: 576 INSLAFHPDGKSYASGGEDG 595
IN+L PDG AS G+DG
Sbjct: 199 INTLTASPDGTLIASAGKDG 218
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 75/198 (37%), Gaps = 33/198 (16%)
Query: 424 IITGHAKGDICTWDLRMGRELESISGHAK-----EPINDMQFSKDATMFITASHSQAVEP 478
II+G I W ++ G+ L ++ GH + + + D+ I+A + + V+
Sbjct: 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 479 INDMQF------------------SKDATMFITASKDHTAKLFTTHDRQLLKTYTTERPV 520
N QF S D T+ +A KD L+ ++ + T + + V
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
Query: 521 NSAALSPILPHVVLGGGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGP-INSL 579
S A SP + T T KV D ++ EFA P SL
Sbjct: 241 FSLAFSPNRYWLA--------AATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL 292
Query: 580 AFHPDGKSYASGGEDGFL 597
A+ DG++ +G D +
Sbjct: 293 AWSADGQTLFAGYTDNVI 310
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 843 GHFGPINSLAFHPDGKSYASGGEDGFVRLHTFDQAYFDYTFDISEE 888
GH IN+L PDG AS G+DG + L YT +E
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 239
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 78/200 (39%), Gaps = 33/200 (16%)
Query: 415 LLWGNLDQYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASHSQ 474
LL + D+ +I+ GD D + G + S GH+ + D + D ++AS +
Sbjct: 27 LLSASRDKTLISWKLTGD----DQKFGVPVRSFKGHS-HIVQDCTLTADGAYALSASWDK 81
Query: 475 AVE------------------PINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT 516
+ + + K A+M I+ S+D T K++T + L
Sbjct: 82 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGH 141
Query: 517 ERPVNSAALSPILPHVVLGGGQEAREVTTTSTKVGKFD-ARFYHLIFEEEFARIKGHFGP 575
V+ + P ++A + + T G + ++L + A GH
Sbjct: 142 NDWVSQVRVVP---------NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN 192
Query: 576 INSLAFHPDGKSYASGGEDG 595
IN+L PDG AS G+DG
Sbjct: 193 INTLTASPDGTLIASAGKDG 212
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 75/198 (37%), Gaps = 33/198 (16%)
Query: 424 IITGHAKGDICTWDLRMGRELESISGHAK-----EPINDMQFSKDATMFITASHSQAVEP 478
II+G I W ++ G+ L ++ GH + + + D+ I+A + + V+
Sbjct: 116 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 174
Query: 479 INDMQF------------------SKDATMFITASKDHTAKLFTTHDRQLLKTYTTERPV 520
N QF S D T+ +A KD L+ ++ + T + + V
Sbjct: 175 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 234
Query: 521 NSAALSPILPHVVLGGGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGP-INSL 579
S A SP + T T KV D ++ EFA P SL
Sbjct: 235 FSLAFSPNRYWLA--------AATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL 286
Query: 580 AFHPDGKSYASGGEDGFL 597
A+ DG++ +G D +
Sbjct: 287 AWSADGQTLFAGYTDNVI 304
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 843 GHFGPINSLAFHPDGKSYASGGEDGFVRLHTFDQAYFDYTFDISEE 888
GH IN+L PDG AS G+DG + L YT +E
Sbjct: 188 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 233
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 78/200 (39%), Gaps = 33/200 (16%)
Query: 415 LLWGNLDQYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASHSQ 474
LL + D+ +I+ GD D + G + S GH+ + D + D ++AS +
Sbjct: 33 LLSASRDKTLISWKLTGD----DQKFGVPVRSFKGHS-HIVQDCTLTADGAYALSASWDK 87
Query: 475 AVE------------------PINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT 516
+ + + K A+M I+ S+D T K++T + L
Sbjct: 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGH 147
Query: 517 ERPVNSAALSPILPHVVLGGGQEAREVTTTSTKVGKFD-ARFYHLIFEEEFARIKGHFGP 575
V+ + P ++A + + T G + ++L + A GH
Sbjct: 148 NDWVSQVRVVP---------NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN 198
Query: 576 INSLAFHPDGKSYASGGEDG 595
IN+L PDG AS G+DG
Sbjct: 199 INTLTASPDGTLIASAGKDG 218
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 75/198 (37%), Gaps = 33/198 (16%)
Query: 424 IITGHAKGDICTWDLRMGRELESISGHAK-----EPINDMQFSKDATMFITASHSQAVEP 478
II+G I W ++ G+ L ++ GH + + + D+ I+A + + V+
Sbjct: 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 479 INDMQF------------------SKDATMFITASKDHTAKLFTTHDRQLLKTYTTERPV 520
N QF S D T+ +A KD L+ ++ + T + + V
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
Query: 521 NSAALSPILPHVVLGGGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGP-INSL 579
S A SP + T T KV D ++ EFA P SL
Sbjct: 241 FSLAFSPNRYWLA--------AATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL 292
Query: 580 AFHPDGKSYASGGEDGFL 597
A+ DG++ +G D +
Sbjct: 293 AWSADGQTLFAGYTDNVI 310
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 843 GHFGPINSLAFHPDGKSYASGGEDGFVRLHTFDQAYFDYTFDISEE 888
GH IN+L PDG AS G+DG + L YT +E
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 239
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 78/200 (39%), Gaps = 33/200 (16%)
Query: 415 LLWGNLDQYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASHSQ 474
LL + D+ +I+ GD D + G + S GH+ + D + D ++AS +
Sbjct: 33 LLSASRDKTLISWKLTGD----DQKFGVPVRSFKGHS-HIVQDCTLTADGAYALSASWDK 87
Query: 475 AVE------------------PINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT 516
+ + + K A+M I+ S+D T K++T + L
Sbjct: 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGH 147
Query: 517 ERPVNSAALSPILPHVVLGGGQEAREVTTTSTKVGKFD-ARFYHLIFEEEFARIKGHFGP 575
V+ + P ++A + + T G + ++L + A GH
Sbjct: 148 NDWVSQVRVVP---------NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN 198
Query: 576 INSLAFHPDGKSYASGGEDG 595
IN+L PDG AS G+DG
Sbjct: 199 INTLTASPDGTLIASAGKDG 218
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 75/198 (37%), Gaps = 33/198 (16%)
Query: 424 IITGHAKGDICTWDLRMGRELESISGHAK-----EPINDMQFSKDATMFITASHSQAVEP 478
II+G I W ++ G+ L ++ GH + + + D+ I+A + + V+
Sbjct: 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 479 INDMQF------------------SKDATMFITASKDHTAKLFTTHDRQLLKTYTTERPV 520
N QF S D T+ +A KD L+ ++ + T + + V
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
Query: 521 NSAALSPILPHVVLGGGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGP-INSL 579
S A SP + T T KV D ++ EFA P SL
Sbjct: 241 FSLAFSPNRYWLA--------AATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL 292
Query: 580 AFHPDGKSYASGGEDGFL 597
A+ DG++ +G D +
Sbjct: 293 AWSADGQTLFAGYTDNVI 310
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 843 GHFGPINSLAFHPDGKSYASGGEDGFVRLHTFDQAYFDYTFDISEE 888
GH IN+L PDG AS G+DG + L YT +E
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 239
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 78/200 (39%), Gaps = 33/200 (16%)
Query: 415 LLWGNLDQYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASHSQ 474
LL + D+ +I+ GD D + G + S GH+ + D + D ++AS +
Sbjct: 33 LLSASRDKTLISWKLTGD----DQKFGVPVRSFKGHS-HIVQDCTLTADGAYALSASWDK 87
Query: 475 AVE------------------PINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT 516
+ + + K A+M I+ S+D T K++T + L
Sbjct: 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGH 147
Query: 517 ERPVNSAALSPILPHVVLGGGQEAREVTTTSTKVGKFD-ARFYHLIFEEEFARIKGHFGP 575
V+ + P ++A + + T G + ++L + A GH
Sbjct: 148 NDWVSQVRVVP---------NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN 198
Query: 576 INSLAFHPDGKSYASGGEDG 595
IN+L PDG AS G+DG
Sbjct: 199 INTLTASPDGTLIASAGKDG 218
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 75/198 (37%), Gaps = 33/198 (16%)
Query: 424 IITGHAKGDICTWDLRMGRELESISGHAK-----EPINDMQFSKDATMFITASHSQAVEP 478
II+G I W ++ G+ L ++ GH + + + D+ I+A + + V+
Sbjct: 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 479 INDMQF------------------SKDATMFITASKDHTAKLFTTHDRQLLKTYTTERPV 520
N QF S D T+ +A KD L+ ++ + T + + V
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
Query: 521 NSAALSPILPHVVLGGGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGP-INSL 579
S A SP + T T KV D ++ EFA P SL
Sbjct: 241 FSLAFSPNRYWLA--------AATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSL 292
Query: 580 AFHPDGKSYASGGEDGFL 597
A+ DG++ +G D +
Sbjct: 293 AWSADGQTLFAGYTDNVI 310
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 843 GHFGPINSLAFHPDGKSYASGGEDGFVRLHTFDQAYFDYTFDISEE 888
GH IN+L PDG AS G+DG + L YT +E
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 239
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 80/202 (39%), Gaps = 34/202 (16%)
Query: 422 QYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASHSQAV----- 476
+Y+ G G I +L R S GH K+ + +QF+ D I++S +
Sbjct: 974 EYVAFGDEDGAIKIIELPNNRVFSSGVGH-KKAVRHIQFTADGKTLISSSEDSVIQVWNW 1032
Query: 477 ------------EPINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTTER-PVNSA 523
E + D + +D+ + ++ S D T K++ ++ + +T + V S
Sbjct: 1033 QTGDYVFLQAHQETVKDFRLLQDSRL-LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSC 1091
Query: 524 ALSPILPHVVLGGGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHP 583
A+S + T S+ A+ + +KGH G + AF
Sbjct: 1092 AISS--------------DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSL 1137
Query: 584 DGKSYASGGEDGFLISNTLSNG 605
DG A+G ++G + +S+G
Sbjct: 1138 DGILLATGDDNGEIRIWNVSDG 1159
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 13/115 (11%)
Query: 484 FSKDATMFITASKDHTAKLFTTHDRQLLKTYTTE-RPVNSAALSPILPHVVLGGGQEARE 542
FS D + T S D K++ + +L+ TY VN + H++L G
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGS---- 720
Query: 543 VTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL 597
F + + L +E + GH +N F PD + AS DG L
Sbjct: 721 --------NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 64/179 (35%), Gaps = 35/179 (19%)
Query: 421 DQYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASHS--QAVEP 478
D+ + + A G + WD+R E +SI + F +S + VE
Sbjct: 755 DELLASCSADGTLRLWDVRSANERKSI---------------NVKRFFLSSEDPPEDVEV 799
Query: 479 I-NDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT--ERPVNSAALSPILPHVVLG 535
I +S D I A+K+ LF H LL T + SP V+
Sbjct: 800 IVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIA 858
Query: 536 GGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGED 594
Q E+ +++ D R GH ++ + F PDG S+ + +D
Sbjct: 859 LSQYCVELWNIDSRLKVADCR--------------GHLSWVHGVMFSPDGSSFLTASDD 903
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 19/140 (13%)
Query: 484 FSKDATMFITASKDHTAKLFT------THDRQLLKTYTTERPVNSAALSPILPHVVLGGG 537
S DAT F + S D TAK+++ H+ LK + V +A S L ++L G
Sbjct: 1093 ISSDATKFSSTSADKTAKIWSFDLLSPLHE---LKGHNG--CVRCSAFS--LDGILLATG 1145
Query: 538 QEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL 597
+ E+ + G+ + EE A H G + + F PD K+ S G G+L
Sbjct: 1146 DDNGEIRIWNVSDGQLLHSCAPISVEEGTAT---HGGWVTDVCFSPDSKTLVSAG--GYL 1200
Query: 598 ISNTLSNGLDISEGSFTSSS 617
++ G D S+ +T+ +
Sbjct: 1201 KWWNVATG-DSSQTFYTNGT 1219
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 80/202 (39%), Gaps = 34/202 (16%)
Query: 422 QYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASHSQAV----- 476
+Y+ G G I +L R S GH K+ + +QF+ D I++S +
Sbjct: 981 EYVAFGDEDGAIKIIELPNNRVFSSGVGH-KKAVRHIQFTADGKTLISSSEDSVIQVWNW 1039
Query: 477 ------------EPINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTTER-PVNSA 523
E + D + +D+ + ++ S D T K++ ++ + +T + V S
Sbjct: 1040 QTGDYVFLQAHQETVKDFRLLQDSRL-LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSC 1098
Query: 524 ALSPILPHVVLGGGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHP 583
A+S + T S+ A+ + +KGH G + AF
Sbjct: 1099 AISS--------------DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSL 1144
Query: 584 DGKSYASGGEDGFLISNTLSNG 605
DG A+G ++G + +S+G
Sbjct: 1145 DGILLATGDDNGEIRIWNVSDG 1166
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 13/115 (11%)
Query: 484 FSKDATMFITASKDHTAKLFTTHDRQLLKTYTTE-RPVNSAALSPILPHVVLGGGQEARE 542
FS D + T S D K++ + +L+ TY VN + H++L G
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGS---- 727
Query: 543 VTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL 597
F + + L +E + GH +N F PD + AS DG L
Sbjct: 728 --------NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 774
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 64/179 (35%), Gaps = 35/179 (19%)
Query: 421 DQYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASHS--QAVEP 478
D+ + + A G + WD+R E +SI + F +S + VE
Sbjct: 762 DELLASCSADGTLRLWDVRSANERKSI---------------NVKRFFLSSEDPPEDVEV 806
Query: 479 I-NDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT--ERPVNSAALSPILPHVVLG 535
I +S D I A+K+ LF H LL T + SP V+
Sbjct: 807 IVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIA 865
Query: 536 GGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGED 594
Q E+ +++ D R GH ++ + F PDG S+ + +D
Sbjct: 866 LSQYCVELWNIDSRLKVADCR--------------GHLSWVHGVMFSPDGSSFLTASDD 910
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 19/140 (13%)
Query: 484 FSKDATMFITASKDHTAKLFT------THDRQLLKTYTTERPVNSAALSPILPHVVLGGG 537
S DAT F + S D TAK+++ H+ LK + V +A S L ++L G
Sbjct: 1100 ISSDATKFSSTSADKTAKIWSFDLLSPLHE---LKGHNG--CVRCSAFS--LDGILLATG 1152
Query: 538 QEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL 597
+ E+ + G+ + EE A H G + + F PD K+ S G G+L
Sbjct: 1153 DDNGEIRIWNVSDGQLLHSCAPISVEEGTAT---HGGWVTDVCFSPDSKTLVSAG--GYL 1207
Query: 598 ISNTLSNGLDISEGSFTSSS 617
++ G D S+ +T+ +
Sbjct: 1208 KWWNVATG-DSSQTFYTNGT 1226
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 59/164 (35%), Gaps = 32/164 (19%)
Query: 479 INDMQFSKDATMFITASKDHTAKLFTTHDRQL-LKTYTTERPVNSAALSPILPHVVLGGG 537
++D+ S + ++AS DH+ +L+ + Q K + V S A SP +V GG
Sbjct: 70 VSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGR 129
Query: 538 QEAREVTTTSTKV-----------------------------GKFD--ARFYHLIFEEEF 566
A V + G +D + + L
Sbjct: 130 DNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLV 189
Query: 567 ARIKGHFGPINSLAFHPDGKSYASGGEDGFLISNTLSNGLDISE 610
+KGH + S+ PDG AS +DG L+ G +SE
Sbjct: 190 TDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSE 233
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 823 GKFD--ARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFVRL 871
G +D + + L +KGH + S+ PDG AS +DG RL
Sbjct: 172 GGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARL 222
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 29/164 (17%)
Query: 436 WDLRMGRELESISGHAKEPINDMQFSKDATMFITASHSQAVEPINDMQFSKDATMFITAS 495
WDLR G + GH E + + FS D ++A + ++ N + K F +A
Sbjct: 103 WDLRTGTTYKRFVGHQSE-VYSVAFSPDNRQILSAGAEREIKLWNILGECK----FSSAE 157
Query: 496 K-DHTAKLFTTHDRQLLKTYTTERPVNSAALSPILPHVVLGGGQEAREVTTTSTKVGKFD 554
K +H+ + ++K+ + + P P+ G +V T+ F
Sbjct: 158 KENHSDWVSCVRYSPIMKS--------ANKVQPFAPYFASVGWDGRLKVWNTN-----FQ 204
Query: 555 ARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFLI 598
R+ K H +N L+ P+GK A+GG+D L+
Sbjct: 205 IRY----------TFKAHESNVNHLSISPNGKYIATGGKDKKLL 238
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 77/200 (38%), Gaps = 33/200 (16%)
Query: 415 LLWGNLDQYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASHSQ 474
LL + D+ +I+ GD D + G + S GH+ + D + D ++AS +
Sbjct: 33 LLSASRDKTLISWKLTGD----DQKFGVPVRSFKGHS-HIVQDCTLTADGAYALSASWDK 87
Query: 475 AVE------------------PINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT 516
+ + + K A+ I+ S+D T K++T + L
Sbjct: 88 TLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGH 147
Query: 517 ERPVNSAALSPILPHVVLGGGQEAREVTTTSTKVGK-FDARFYHLIFEEEFARIKGHFGP 575
V+ + P ++A + + T G + ++L + A GH
Sbjct: 148 NDWVSQVRVVP---------NEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSN 198
Query: 576 INSLAFHPDGKSYASGGEDG 595
IN+L PDG AS G+DG
Sbjct: 199 INTLTASPDGTLIASAGKDG 218
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 843 GHFGPINSLAFHPDGKSYASGGEDGFVRLHTFDQAYFDYTFDISEE 888
GH IN+L PDG AS G+DG + L YT +E
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDE 239
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 74/198 (37%), Gaps = 33/198 (16%)
Query: 424 IITGHAKGDICTWDLRMGRELESISGHAK-----EPINDMQFSKDATMFITASHSQAVEP 478
II+G I W ++ G+ L ++ GH + + + D+ I+A + + V+
Sbjct: 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKA 180
Query: 479 INDMQF------------------SKDATMFITASKDHTAKLFTTHDRQLLKTYTTERPV 520
N QF S D T+ +A KD L+ ++ T + + V
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEV 240
Query: 521 NSAALSPILPHVVLGGGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGP-INSL 579
S A SP + T T KV D ++ EFA P SL
Sbjct: 241 FSLAFSPNRYWLA--------AATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL 292
Query: 580 AFHPDGKSYASGGEDGFL 597
A+ DG++ +G D +
Sbjct: 293 AWSADGQTLFAGYTDNVI 310
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 62/171 (36%), Gaps = 54/171 (31%)
Query: 436 WDLRMGRELESISGHAKEPINDMQFSKDATMFITASHSQAVEPINDMQFSKDATMFITAS 495
WD+R G ++ +GH + IN + F + F T S
Sbjct: 211 WDVREGMCRQTFTGHESD-------------------------INAICFFPNGNAFATGS 245
Query: 496 KDHTAKLFTTHDRQLLKTYTTERPVNSAALSPILPHVVLGGGQEAREVTTTS-TKVGK-- 552
D T +LF Q L TY+ + +++ G +T+ S +K G+
Sbjct: 246 DDATCRLFDLRADQELMTYSHD-------------NIICG-------ITSVSFSKSGRLL 285
Query: 553 ------FDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL 597
F+ + + + + GH ++ L DG + A+G D FL
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 843 GHFGPINSLAFHPDGKSYASGGEDGFVRLHTF--DQAYFDYTFD 884
GH IN++ F P+G ++A+G +D RL DQ Y+ D
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 62/171 (36%), Gaps = 54/171 (31%)
Query: 436 WDLRMGRELESISGHAKEPINDMQFSKDATMFITASHSQAVEPINDMQFSKDATMFITAS 495
WD+R G ++ +GH + IN + F + F T S
Sbjct: 222 WDVREGMCRQTFTGHESD-------------------------INAICFFPNGNAFATGS 256
Query: 496 KDHTAKLFTTHDRQLLKTYTTERPVNSAALSPILPHVVLGGGQEAREVTTTS-TKVGK-- 552
D T +LF Q L TY+ + +++ G +T+ S +K G+
Sbjct: 257 DDATCRLFDLRADQELMTYSHD-------------NIICG-------ITSVSFSKSGRLL 296
Query: 553 ------FDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL 597
F+ + + + + GH ++ L DG + A+G D FL
Sbjct: 297 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 347
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 823 GKFDARFYHLIFEEEFAR--IKGHFGPINSLAFHPDGKSYASGGEDGFVRLHTF--DQAY 878
G DA E R GH IN++ F P+G ++A+G +D RL DQ
Sbjct: 213 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 272
Query: 879 FDYTFD 884
Y+ D
Sbjct: 273 MTYSHD 278
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 551 GKFDARFYHLIFEEEFAR--IKGHFGPINSLAFHPDGKSYASGGED 594
G DA E R GH IN++ F P+G ++A+G +D
Sbjct: 213 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 258
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 62/171 (36%), Gaps = 54/171 (31%)
Query: 436 WDLRMGRELESISGHAKEPINDMQFSKDATMFITASHSQAVEPINDMQFSKDATMFITAS 495
WD+R G ++ +GH + IN + F + F T S
Sbjct: 211 WDVREGMCRQTFTGHESD-------------------------INAICFFPNGNAFATGS 245
Query: 496 KDHTAKLFTTHDRQLLKTYTTERPVNSAALSPILPHVVLGGGQEAREVTTTS-TKVGK-- 552
D T +LF Q L TY+ + +++ G +T+ S +K G+
Sbjct: 246 DDATCRLFDLRADQELMTYSHD-------------NIICG-------ITSVSFSKSGRLL 285
Query: 553 ------FDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL 597
F+ + + + + GH ++ L DG + A+G D FL
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 843 GHFGPINSLAFHPDGKSYASGGEDGFVRLHTF--DQAYFDYTFD 884
GH IN++ F P+G ++A+G +D RL DQ Y+ D
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 59/165 (35%), Gaps = 42/165 (25%)
Query: 436 WDLRMGRELESISGHAKEPINDMQFSKDATMFITASHSQAVEPINDMQFSKDATMFITAS 495
WD+R G ++ +GH + IN + F + F T S
Sbjct: 211 WDVREGMCRQTFTGHESD-------------------------INAICFFPNGNAFATGS 245
Query: 496 KDHTAKLFTTHDRQLLKTYTTER---PVNSAALSPILPHVVLGGGQEAREVTTTSTKVGK 552
D T +LF Q L TY+ + + S + S ++L G +
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS-GRLLLAGYDD------------- 291
Query: 553 FDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL 597
F+ + + + + GH ++ L DG + A+G D FL
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 843 GHFGPINSLAFHPDGKSYASGGEDGFVRLHTF--DQAYFDYTFD 884
GH IN++ F P+G ++A+G +D RL DQ Y+ D
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 59/165 (35%), Gaps = 42/165 (25%)
Query: 436 WDLRMGRELESISGHAKEPINDMQFSKDATMFITASHSQAVEPINDMQFSKDATMFITAS 495
WD+R G ++ +GH + IN + F + F T S
Sbjct: 211 WDVREGMCRQTFTGHESD-------------------------INAICFFPNGNAFATGS 245
Query: 496 KDHTAKLFTTHDRQLLKTYTTER---PVNSAALSPILPHVVLGGGQEAREVTTTSTKVGK 552
D T +LF Q L TY+ + + S + S ++L G +
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS-GRLLLAGYDD------------- 291
Query: 553 FDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL 597
F+ + + + + GH ++ L DG + A+G D FL
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 843 GHFGPINSLAFHPDGKSYASGGEDGFVRLHTF--DQAYFDYTFD 884
GH IN++ F P+G ++A+G +D RL DQ Y+ D
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 18/139 (12%)
Query: 436 WDLRMGRELESISGHAKEPINDMQFSKDATMFITASHSQAVEPINDMQFSKDATMFI--- 492
W+ ++ GH ++ + FS D + F+T+S Q + + K++ + +
Sbjct: 873 WNTDSRSKVADCRGHLS-WVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQE 931
Query: 493 -----------TASKDHTAKLFTTHDRQLLKTYTTERPVNSAALSPILPHVVLGGGQEAR 541
+ DH +L + R Y TE V+ LSP L ++ G A
Sbjct: 932 VDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAI 991
Query: 542 EVT-TTSTKVGKFDARFYH 559
E+ + ++ F +RF H
Sbjct: 992 EILELVNNRI--FQSRFQH 1008
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 42/115 (36%), Gaps = 13/115 (11%)
Query: 484 FSKDATMFITASKDHTAKLFTTHDRQLLKTYTTE-RPVNSAALSPILPHVVLGGGQEARE 542
FS D T S D K++ + +L+ TY VN + H++L G
Sbjct: 671 FSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGS---- 726
Query: 543 VTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL 597
+ + L +E + GH +N F PD K AS DG L
Sbjct: 727 --------SDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTL 773
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 15/72 (20%)
Query: 541 REVTTTSTKVGKFDARFYHL---------------IFEEEFARIKGHFGPINSLAFHPDG 585
R +T+ S +VG Y L + E A + GH + L + PDG
Sbjct: 103 RNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 162
Query: 586 KSYASGGEDGFL 597
+ ASGG D +
Sbjct: 163 RHLASGGNDNLV 174
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 13/57 (22%)
Query: 833 IFEEEFARIKGHFGPINSLAFHPDGKSYASGGED-------------GFVRLHTFDQ 876
+ E A + GH + L + PDG+ ASGG D G+V L TF Q
Sbjct: 138 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 194
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 43/257 (16%), Positives = 93/257 (36%), Gaps = 59/257 (22%)
Query: 394 ATNAEPVVKMQVTDQSAKITSLLWGNLDQYIITGHAKGDICTWDLRMGRELESISGHAKE 453
A++ + + +Q+ I+S+ W Y+ G + ++ WD++ + L +++ H+
Sbjct: 52 ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR 111
Query: 454 PINDMQFSKDATMFITASHSQAV-------------------EPINDMQFSKDATMFITA 494
S ++ + + S S + + + ++++ D +
Sbjct: 112 V---GSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 168
Query: 495 SKDHTAKLFTTHDRQ----LLKTYTTER-PVNSAALSPILPHVV-LGGGQEAREVTTTST 548
D+ ++ + + L+T+T + V + A P +V+ GGG R + +
Sbjct: 169 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 228
Query: 549 KVGK---------------FDARFYHLIFEEEFAR----------------IKGHFGPIN 577
G + + LI FA+ +KGH +
Sbjct: 229 CSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVL 288
Query: 578 SLAFHPDGKSYASGGED 594
SL PDG + AS D
Sbjct: 289 SLTMSPDGATVASAAAD 305
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 837 EFARIKGHFGPINSLAFHPDGKSYASGGEDGFVRL 871
+ A +KGH + SL PDG + AS D +RL
Sbjct: 276 KVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 310
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 15/72 (20%)
Query: 541 REVTTTSTKVGKFDARFYHL---------------IFEEEFARIKGHFGPINSLAFHPDG 585
R +T+ S +VG Y L + E A + GH + L + PDG
Sbjct: 183 RNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 242
Query: 586 KSYASGGEDGFL 597
+ ASGG D +
Sbjct: 243 RHLASGGNDNLV 254
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 13/57 (22%)
Query: 833 IFEEEFARIKGHFGPINSLAFHPDGKSYASGGED-------------GFVRLHTFDQ 876
+ E A + GH + L + PDG+ ASGG D G+V L TF Q
Sbjct: 218 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 274
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 45/261 (17%), Positives = 95/261 (36%), Gaps = 61/261 (23%)
Query: 394 ATNAEPVVKMQVTDQSAKITSLLWGNLDQYIITGHAKGDICTWDLRMGRELESISGHAKE 453
A++ + + +Q+ I+S+ W Y+ G + ++ WD++ + L +++ H+
Sbjct: 132 ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR 191
Query: 454 PINDMQFSK--------------------DATMFITASHSQAVEPINDMQFSKDATMFIT 493
+ + ++ + + + HSQ V ++++ D +
Sbjct: 192 -VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV---CGLRWAPDGRHLAS 247
Query: 494 ASKDHTAKLFTTHDRQ----LLKTYTTER-PVNSAALSPILPHVV-LGGGQEAREVTTTS 547
D+ ++ + + L+T+T + V + A P +V+ GGG R + +
Sbjct: 248 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 307
Query: 548 TKVGK---------------FDARFYHLIFEEEFAR----------------IKGHFGPI 576
G + + LI FA+ +KGH +
Sbjct: 308 VCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRV 367
Query: 577 NSLAFHPDGKSYASGGEDGFL 597
SL PDG + AS D L
Sbjct: 368 LSLTMSPDGATVASAAADETL 388
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 837 EFARIKGHFGPINSLAFHPDGKSYASGGEDGFVRL 871
+ A +KGH + SL PDG + AS D +RL
Sbjct: 356 KVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 390
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 15/72 (20%)
Query: 541 REVTTTSTKVGKFDARFYHL---------------IFEEEFARIKGHFGPINSLAFHPDG 585
R +T+ S +VG Y L + E A + GH + L + PDG
Sbjct: 194 RNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 253
Query: 586 KSYASGGEDGFL 597
+ ASGG D +
Sbjct: 254 RHLASGGNDNLV 265
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 13/57 (22%)
Query: 833 IFEEEFARIKGHFGPINSLAFHPDGKSYASGGED-------------GFVRLHTFDQ 876
+ E A + GH + L + PDG+ ASGG D G+V L TF Q
Sbjct: 229 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 285
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 45/261 (17%), Positives = 95/261 (36%), Gaps = 61/261 (23%)
Query: 394 ATNAEPVVKMQVTDQSAKITSLLWGNLDQYIITGHAKGDICTWDLRMGRELESISGHAKE 453
A++ + + +Q+ I+S+ W Y+ G + ++ WD++ + L +++ H+
Sbjct: 143 ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR 202
Query: 454 PINDMQFSK--------------------DATMFITASHSQAVEPINDMQFSKDATMFIT 493
+ + ++ + + + HSQ V ++++ D +
Sbjct: 203 -VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV---CGLRWAPDGRHLAS 258
Query: 494 ASKDHTAKLFTTHDRQ----LLKTYTTER-PVNSAALSPILPHVV-LGGGQEAREVTTTS 547
D+ ++ + + L+T+T + V + A P +V+ GGG R + +
Sbjct: 259 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 318
Query: 548 TKVGK---------------FDARFYHLIFEEEFAR----------------IKGHFGPI 576
G + + LI FA+ +KGH +
Sbjct: 319 VCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRV 378
Query: 577 NSLAFHPDGKSYASGGEDGFL 597
SL PDG + AS D L
Sbjct: 379 LSLTMSPDGATVASAAADETL 399
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 837 EFARIKGHFGPINSLAFHPDGKSYASGGEDGFVRL 871
+ A +KGH + SL PDG + AS D +RL
Sbjct: 367 KVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 401
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 841 IKGHFGPINSLAFHPDGKSYASGGEDGFVRLHTFDQA 877
++GH PI SL F PD + + +DG+++++ A
Sbjct: 202 LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA 238
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 25/92 (27%)
Query: 422 QYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASHSQAVEPIND 481
+Y+ +G G I +D+ G+ L ++ GHA PI
Sbjct: 177 KYLASGAIDGIINIFDIATGKLLHTLEGHAM-------------------------PIRS 211
Query: 482 MQFSKDATMFITASKDHTAKLFTTHDRQLLKT 513
+ FS D+ + +TAS D K++ L T
Sbjct: 212 LTFSPDSQLLVTASDDGYIKIYDVQHANLAGT 243
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 59/161 (36%), Gaps = 41/161 (25%)
Query: 486 KDATMFITASKDHTAKLFTTHDRQLLKTYTTE---RPVNSAALSPILP---------HVV 533
+++ +T S D K++ D +L ++ E V S +S LP H+
Sbjct: 46 ENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105
Query: 534 LGGGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPIN---------------- 577
L + +++ S G DA + ++ H G +N
Sbjct: 106 LWDLENGKQIK--SIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTR 163
Query: 578 -----SLAFHPDGKSYASGGEDGFLISNTLSNGLDISEGSF 613
S+A+ PDGK ASG DG + N DI+ G
Sbjct: 164 GKFILSIAYSPDGKYLASGAIDGII------NIFDIATGKL 198
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 75/196 (38%), Gaps = 48/196 (24%)
Query: 561 IFEEEFARIKGHFGP----INSLAFHPDGKSYASGGEDGFLISNTLSNGLDISE-GSFTS 615
IFE + K FG ++S+ ++PDG +AS G DG ++ L NG+D ++ G F
Sbjct: 174 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIV---LYNGVDGTKTGVFED 230
Query: 616 SS-------------TQQPDGLVYPXXXXXXXXXXXXXXXXXXXXXVFSGSRVDDS--GV 660
S T PDG + G+R++D G+
Sbjct: 231 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI 290
Query: 661 ELTKDEQIEMARNRMSINHSGTRLHVNPFDEQQSVELTKDEQIEMARNR----MSINHSG 716
TK + ++ N IN VNP EL +Q+ N+ +S + G
Sbjct: 291 IWTKQALVSISANGF-IN------FVNP-------ELGSIDQVRYGHNKAITALSSSADG 336
Query: 717 TRL-------HVNPFD 725
L H+N +D
Sbjct: 337 KTLFSADAEGHINSWD 352
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/207 (19%), Positives = 76/207 (36%), Gaps = 41/207 (19%)
Query: 421 DQYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASHSQAVEPIN 480
++ IITG + + WD+ G L ++ H E + ++F+ M +T S +++ +
Sbjct: 183 ERVIITGSSDSTVRVWDVNTGEMLNTLIHHC-EAVLHLRFNNG--MMVTCSKDRSI-AVW 238
Query: 481 DMQFSKDATM--------------------FITASKDHTAKLFTTHDRQLLKTYTTERPV 520
DM D T+ ++AS D T K++ T + ++T +
Sbjct: 239 DMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK-- 296
Query: 521 NSAALSPILPHVVLGGGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLA 580
A +V+ G + R + + ++GH + +
Sbjct: 297 RGIACLQYRDRLVVSGSSDN-------------TIRLWDIECGACLRVLEGHEELVRCIR 343
Query: 581 FHPDGKSYASGGEDGFLISNTLSNGLD 607
F D K SG DG + L LD
Sbjct: 344 F--DNKRIVSGAYDGKIKVWDLVAALD 368
>pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase Lacking The C-Terminal Dimerization Domain In
Complex With Ala-Sa
Length = 739
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 17/69 (24%)
Query: 560 LIFEEEFARIKGHFGPINSLAFHPDGKSYASGGED---GFLISNTLSNGLDISEGSFTSS 616
L FE E ++G F +N AF+P+ SGG+D G+LI+N G F
Sbjct: 515 LEFEAEVIGVEGDFVILNRSAFYPE-----SGGQDNDVGYLIANG---------GKFEVV 560
Query: 617 STQQPDGLV 625
+ DG+V
Sbjct: 561 DVLEADGVV 569
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 833 IFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFVRL 871
I + ++GH + LA+ DG ASGG D V++
Sbjct: 205 IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQI 243
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 9/155 (5%)
Query: 466 MFITASHSQAVEPINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTTERPVNSAAL 525
+ I H Q I + + ++ S D T +++ Q T + E V + A+
Sbjct: 158 VMILQGHEQ---DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV 214
Query: 526 SPILPHVVLGGGQEAREVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDG 585
SP + G + R V ++ G R + E GH + S+ F DG
Sbjct: 215 SPGDGKYIAAGSLD-RAVRVWDSETGFLVERL-----DSENESGTGHKDSVYSVVFTRDG 268
Query: 586 KSYASGGEDGFLISNTLSNGLDISEGSFTSSSTQQ 620
+S SG D + L N + S+ +S T +
Sbjct: 269 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE 303
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 848 INSLAFHPDGKSYASGGEDGFVRL 871
I S+ F PDGK A+G ED +R+
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRI 149
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 411 KITSLLWGNLDQYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFIT 469
++T L W + I+TG G++ W+ + G L ++ H + PI ++++KD T I+
Sbjct: 110 QVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFH-RAPIVSVKWNKDGTHIIS 166
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 462 KDATMFITASHSQAVEPINDMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTTERPVN 521
+D+ I + P+ D+ +S D + TAS D TAK++ Q ++ + PV
Sbjct: 72 QDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVK 131
Query: 522 S 522
+
Sbjct: 132 T 132
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 24/96 (25%)
Query: 421 DQYIITGHAKGDICTWDLRMGRELESISGHAKEPINDMQFSKDATMFITASHSQAVEPIN 480
D +++G+A + WD++ G+ L+++ G K H AV
Sbjct: 329 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNK-------------------HQSAVTC-- 367
Query: 481 DMQFSKDATMFITASKDHTAKLFTTHDRQLLKTYTT 516
+QF+K+ IT+S D T KL+ + ++ T
Sbjct: 368 -LQFNKN--FVITSSDDGTVKLWDLKTGEFIRNLVT 400
>pdb|3ZWU|A Chain A, Pseudomonas Fluorescens Phox In Complex With Vanadate, A
Transition State Analogue
pdb|3ZWU|B Chain B, Pseudomonas Fluorescens Phox In Complex With Vanadate, A
Transition State Analogue
pdb|4A9V|A Chain A, Pseudomonas Fluorescens Phox
pdb|4A9X|A Chain A, Pseudomonas Fluorescens Phox In Complex With The Substrate
Analogue Appcp
Length = 592
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 666 EQIEMARNRMSINHSGTRLHVNPFDEQQSVELTKDEQIEMARNRMSINHSGTRLHVNPFD 725
+Q + A+ R ++ + ++ +PFD + +MA+N +N G + ++PFD
Sbjct: 207 QQFDPAQKRYGVSAASREINWHPFDPR----------FDMAKNPNELNRHGWVVEIDPFD 256
Query: 726 EQQS 729
Q +
Sbjct: 257 PQST 260
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 52/137 (37%), Gaps = 27/137 (19%)
Query: 486 KDATMFITASKDHTAKLFTTHDRQLLKTYTT--ERPVNSAALSPI--LPHVVLGGGQEAR 541
KD + F + D T K+++ T TT ER VN P+ P+++
Sbjct: 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 542 EVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL---- 597
++ TK A ++GH ++ FHP SG EDG L
Sbjct: 211 KIWDYQTK--------------SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 598 -----ISNTLSNGLDIS 609
+ TL+ GL+ S
Sbjct: 257 SSTYKVEKTLNVGLERS 273
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 52/137 (37%), Gaps = 27/137 (19%)
Query: 486 KDATMFITASKDHTAKLFTTHDRQLLKTYTT--ERPVNSAALSPI--LPHVVLGGGQEAR 541
KD + F + D T K+++ T TT ER VN P+ P+++
Sbjct: 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 542 EVTTTSTKVGKFDARFYHLIFEEEFARIKGHFGPINSLAFHPDGKSYASGGEDGFL---- 597
++ TK A ++GH ++ FHP SG EDG L
Sbjct: 211 KIWDYQTK--------------SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 598 -----ISNTLSNGLDIS 609
+ TL+ GL+ S
Sbjct: 257 SSTYKVEKTLNVGLERS 273
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,494,037
Number of Sequences: 62578
Number of extensions: 614530
Number of successful extensions: 1766
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1329
Number of HSP's gapped (non-prelim): 398
length of query: 894
length of database: 14,973,337
effective HSP length: 108
effective length of query: 786
effective length of database: 8,214,913
effective search space: 6456921618
effective search space used: 6456921618
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)