BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10064
(257 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7K0F0|CC130_DROME Coiled-coil domain-containing protein 130 homolog OS=Drosophila
melanogaster GN=CG15084 PE=2 SV=1
Length = 316
Score = 350 bits (897), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 158/234 (67%), Positives = 189/234 (80%)
Query: 1 MGERKGTNKYYPPDYDPSVGGLNKFLGTHALRERARKLHMGIMIIRFELPYNIWCEGCNN 60
MGERKG NKYYPPDYDP GGLNKF GTHALRERARK+H+GI+IIRFE+PYNIWC+GC N
Sbjct: 1 MGERKGQNKYYPPDYDPKKGGLNKFQGTHALRERARKIHLGIIIIRFEMPYNIWCDGCKN 60
Query: 61 HIGMGVRYNAEKKKVGMYYSTPVYQFRMKCHLCDSHFEIKTDPGNLDYVIVSGARRQENR 120
HIGMGVRYNAEK KVGMYY+TPV++FRMKCHLCD+HFEI+TDPGNLDYVI+SGARRQENR
Sbjct: 61 HIGMGVRYNAEKTKVGMYYTTPVFKFRMKCHLCDNHFEIQTDPGNLDYVILSGARRQENR 120
Query: 121 WNPLENEQIVPETKEVSRKLFDDPMYKLEHGTNDMSSSKSKASHLNKLLDRQESVWKNDF 180
W+PL+NEQ+VPETKEV ++LFDD MYKLEH D + L KL++R SVW + +
Sbjct: 121 WDPLQNEQVVPETKEVQKRLFDDAMYKLEHQAKDAKAGADARPVLQKLVERNMSVWDDSY 180
Query: 181 DANRVLRDSFRKKKKQLKALQDKDNALLSKSSLSLKLVPEHKNDIRLASLYKYQ 234
AN LR FR++KK++ Q+ D LL+KSSL + L+PE D +A+L K Q
Sbjct: 181 MANSRLRAEFRQQKKEINGQQELDRQLLAKSSLDIALLPETTQDREMAALMKLQ 234
>sp|P13994|CC130_HUMAN Coiled-coil domain-containing protein 130 OS=Homo sapiens
GN=CCDC130 PE=1 SV=2
Length = 396
Score = 288 bits (738), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 133/234 (56%), Positives = 178/234 (76%), Gaps = 2/234 (0%)
Query: 1 MGERKGTNKYYPPDYDPSV-GGLNKFLGTHALRERARKLHMGIMIIRFELPYNIWCEGCN 59
MGERKG NKYYPPD++P G LN++ +H LRERARKL GI+IIRFE+PYNIWC+GC
Sbjct: 1 MGERKGVNKYYPPDFNPEKHGSLNRYHNSHPLRERARKLSQGILIIRFEMPYNIWCDGCK 60
Query: 60 NHIGMGVRYNAEKKKVGMYYSTPVYQFRMKCHLCDSHFEIKTDPGNLDYVIVSGARRQEN 119
NHIGMGVRYNAEKKKVG YY+TP+Y+FRMKCHLC ++ E++TDP N DYVIVSGA+R+E
Sbjct: 61 NHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDYVIVSGAQRKEE 120
Query: 120 RWNPLENEQIVPETKEVSRKLFDDPMYKLEHGTNDMSSSKSKASHLNKLLDRQESVWKND 179
RW+ +NEQ++ E +KL D M++LEHG D S+ K L+ + + Q S WK+D
Sbjct: 121 RWDMADNEQVLTTEHEKKQKLETDAMFRLEHGEADRSTLKKALPTLSHIQEAQ-SAWKDD 179
Query: 180 FDANRVLRDSFRKKKKQLKALQDKDNALLSKSSLSLKLVPEHKNDIRLASLYKY 233
F N +LR FR+KKK ++ +++D AL +K+SL++ LVPE ++D +LA+L K+
Sbjct: 180 FALNSMLRRRFREKKKAIQEEEERDQALQAKASLTIPLVPETEDDRKLAALLKF 233
>sp|Q5EA37|CC130_BOVIN Coiled-coil domain-containing protein 130 OS=Bos taurus GN=CCDC130
PE=2 SV=1
Length = 400
Score = 288 bits (738), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 134/234 (57%), Positives = 178/234 (76%), Gaps = 2/234 (0%)
Query: 1 MGERKGTNKYYPPDYDPSV-GGLNKFLGTHALRERARKLHMGIMIIRFELPYNIWCEGCN 59
MGERKG NKYYPPD++P G LN++ +H LRERARKL GI+IIRFE+PYNIWC+GC
Sbjct: 1 MGERKGVNKYYPPDFNPEKHGSLNRYHNSHPLRERARKLSQGILIIRFEMPYNIWCDGCK 60
Query: 60 NHIGMGVRYNAEKKKVGMYYSTPVYQFRMKCHLCDSHFEIKTDPGNLDYVIVSGARRQEN 119
NHIGMGVRYNAEKKKVG YY+TP+Y+FRMKCHLC ++ E++TDP N DYVIVSGA+R+E
Sbjct: 61 NHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDYVIVSGAQRKEE 120
Query: 120 RWNPLENEQIVPETKEVSRKLFDDPMYKLEHGTNDMSSSKSKASHLNKLLDRQESVWKND 179
RW+ +NEQ++ E +KL D M++LEHG D S+ K L+ + + Q S WK+D
Sbjct: 121 RWDMEDNEQVLTTEHEKKQKLEMDAMFRLEHGEADRSTLKKALPTLSHIQEAQ-SAWKDD 179
Query: 180 FDANRVLRDSFRKKKKQLKALQDKDNALLSKSSLSLKLVPEHKNDIRLASLYKY 233
F N +LR FR+KKK ++ +++D AL +K+SL++ LVPE ++D RLA+L K+
Sbjct: 180 FALNSMLRKRFREKKKAMQEEEERDQALQAKASLAIPLVPETEDDRRLAALLKF 233
>sp|Q6DJK9|CC130_XENLA Coiled-coil domain-containing protein 130 OS=Xenopus laevis
GN=ccdc130 PE=2 SV=1
Length = 384
Score = 287 bits (735), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 138/238 (57%), Positives = 184/238 (77%), Gaps = 2/238 (0%)
Query: 1 MGERKGTNKYYPPDYDPSV-GGLNKFLGTHALRERARKLHMGIMIIRFELPYNIWCEGCN 59
MGERKGTNKYYPPD+DP+ G LN + +H LRERARKL GI+IIRFE+PYNIWC+GC
Sbjct: 1 MGERKGTNKYYPPDFDPAKHGSLNGYRNSHPLRERARKLSQGILIIRFEMPYNIWCDGCK 60
Query: 60 NHIGMGVRYNAEKKKVGMYYSTPVYQFRMKCHLCDSHFEIKTDPGNLDYVIVSGARRQEN 119
NHIGMGVRYNAEKKKVG YY+TP+Y+FRMKCHLC ++ E++TDP + DYVIVSGA+R+E
Sbjct: 61 NHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPASCDYVIVSGAQRKEE 120
Query: 120 RWNPLENEQIVPETKEVSRKLFDDPMYKLEHGTNDMSSSKSKASHLNKLLDRQESVWKND 179
RW+ +NEQI+ E ++L D M++LEHG D + + A L++L + Q S WK+D
Sbjct: 121 RWDMQDNEQILTTEHEQKQRLETDSMFRLEHGVQDKAKLQRAAPSLSELQEVQ-SAWKDD 179
Query: 180 FDANRVLRDSFRKKKKQLKALQDKDNALLSKSSLSLKLVPEHKNDIRLASLYKYQHVK 237
F N +LR FR++KKQ+K +++D ALL+K+SL LKLVPE + D ++A+L KY+ ++
Sbjct: 180 FAINSLLRSKFREEKKQIKEEEERDQALLTKASLDLKLVPEVEEDKKIAALLKYRSLE 237
>sp|Q66I85|CC130_DANRE Coiled-coil domain-containing protein 130 homolog OS=Danio rerio
GN=ccdc130 PE=2 SV=1
Length = 390
Score = 285 bits (730), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 171/235 (72%), Gaps = 2/235 (0%)
Query: 1 MGERKGTNKYYPPDYDPSV-GGLNKFLGTHALRERARKLHMGIMIIRFELPYNIWCEGCN 59
MGERKG NK+YPPD+DP+ G +N + TH LRERARKL GI+IIRFE+PYNIWC+GC
Sbjct: 1 MGERKGVNKWYPPDFDPAKHGSINGYYKTHPLRERARKLSQGILIIRFEMPYNIWCDGCK 60
Query: 60 NHIGMGVRYNAEKKKVGMYYSTPVYQFRMKCHLCDSHFEIKTDPGNLDYVIVSGARRQEN 119
NHIGMGVRYNAEKKKVG YY+TP+Y+FRMKCHLC ++ E++TDP DYVIVSGA+R+E
Sbjct: 61 NHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPATCDYVIVSGAQRKEE 120
Query: 120 RWNPLENEQIVPETKEVSRKLFDDPMYKLEHGTNDMSSSKSKASHLNKLLDRQESVWKND 179
RW+ ENEQI+ + KL D MYKL+HG D ++ LN+L + Q S WK+D
Sbjct: 121 RWDMAENEQILTTERNEKEKLETDAMYKLDHGGKDKEKLRAAIPSLNELQEHQ-SGWKDD 179
Query: 180 FDANRVLRDSFRKKKKQLKALQDKDNALLSKSSLSLKLVPEHKNDIRLASLYKYQ 234
F N LR FR +KK + ++KDNA+ ++ LS+ LVPE + D +LASL +Q
Sbjct: 180 FQLNSALRRKFRTEKKVIAEEEEKDNAVRLRTGLSIPLVPEREEDKKLASLLTFQ 234
>sp|Q9D516|CC130_MOUSE Coiled-coil domain-containing protein 130 OS=Mus musculus
GN=Ccdc130 PE=2 SV=1
Length = 385
Score = 284 bits (727), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 132/233 (56%), Positives = 175/233 (75%), Gaps = 2/233 (0%)
Query: 1 MGERKGTNKYYPPDYDPSV-GGLNKFLGTHALRERARKLHMGIMIIRFELPYNIWCEGCN 59
MGERKG NKYYPPD++P G LN++ +H LRERARKL GI++IRFE+PYNIWC+GC
Sbjct: 1 MGERKGQNKYYPPDFNPEKHGSLNRYHNSHPLRERARKLSQGILVIRFEMPYNIWCDGCK 60
Query: 60 NHIGMGVRYNAEKKKVGMYYSTPVYQFRMKCHLCDSHFEIKTDPGNLDYVIVSGARRQEN 119
NHIGMGVRYNAEKKKVG YY+TP+Y+FRMKCHLC ++ E++TDP N DYVIVSGA R+E
Sbjct: 61 NHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDYVIVSGASRKEE 120
Query: 120 RWNPLENEQIVPETKEVSRKLFDDPMYKLEHGTNDMSSSKSKASHLNKLLDRQESVWKND 179
RW+ +NEQ++ E KL D M++LEHG D S+ K L+ + + Q + WK+D
Sbjct: 121 RWDMEDNEQVLTTEHEKKEKLETDAMFRLEHGEADRSTLKKALPTLSHIQEAQ-NAWKDD 179
Query: 180 FDANRVLRDSFRKKKKQLKALQDKDNALLSKSSLSLKLVPEHKNDIRLASLYK 232
F N +LR FR+KKK ++ ++KD AL +K+SL++ LVPE ++D RLA+L +
Sbjct: 180 FALNSMLRRHFREKKKAMQEEEEKDQALQAKASLAIPLVPESEDDRRLAALLR 232
>sp|Q32PZ9|CC130_RAT Coiled-coil domain-containing protein 130 OS=Rattus norvegicus
GN=Ccdc130 PE=2 SV=1
Length = 385
Score = 283 bits (724), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 132/233 (56%), Positives = 175/233 (75%), Gaps = 2/233 (0%)
Query: 1 MGERKGTNKYYPPDYDPSV-GGLNKFLGTHALRERARKLHMGIMIIRFELPYNIWCEGCN 59
MGERKG NKYYPPD++P G LN++ +H LRERARKL GI+IIRFE+PYNIWC+GC
Sbjct: 1 MGERKGQNKYYPPDFNPEKHGSLNRYHNSHPLRERARKLSQGILIIRFEMPYNIWCDGCK 60
Query: 60 NHIGMGVRYNAEKKKVGMYYSTPVYQFRMKCHLCDSHFEIKTDPGNLDYVIVSGARRQEN 119
NHIGMGVRYNAEKKKVG YY+TP+Y+FRMKCHLC ++ E++TDP N DYVIVSGA R+E
Sbjct: 61 NHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDYVIVSGASRKEE 120
Query: 120 RWNPLENEQIVPETKEVSRKLFDDPMYKLEHGTNDMSSSKSKASHLNKLLDRQESVWKND 179
RW+ +NEQ++ E KL D M++LEHG D S+ K L+ + + Q + WK+D
Sbjct: 121 RWDMEDNEQVLTTEHEKKEKLETDAMFRLEHGEADRSTLKKALPTLSHIQEAQ-NAWKDD 179
Query: 180 FDANRVLRDSFRKKKKQLKALQDKDNALLSKSSLSLKLVPEHKNDIRLASLYK 232
F N +LR FR+KKK ++ ++KD AL +K++L++ LVPE ++D RLA+L +
Sbjct: 180 FALNSMLRRHFREKKKAMQEEEEKDQALQAKANLAIPLVPESEDDRRLAALLR 232
>sp|Q09651|CC130_CAEEL Coiled-coil domain-containing protein 130 homolog OS=Caenorhabditis
elegans GN=ZK1307.9 PE=1 SV=1
Length = 369
Score = 241 bits (616), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 116/232 (50%), Positives = 163/232 (70%), Gaps = 3/232 (1%)
Query: 1 MGERKGTNKYYPPDYD-PSVGGLNKFLGTHALRERARKLHMGIMIIRFELPYNIWCEGCN 59
MGERKG N YYPPD++ + LN + GTHALRERA+K+ GI++IRFE+P+NIWC GC+
Sbjct: 1 MGERKGQNFYYPPDFNYKTHKSLNGYHGTHALRERAKKIDQGILVIRFEMPFNIWCLGCH 60
Query: 60 NHIGMGVRYNAEKKKVGMYYSTPVYQFRMKCHLCDSHFEIKTDPGNLDYVIVSGARRQEN 119
NH+GMGVRYNAEKKK+GMYY+TP+++FRMKCHLCD+++ I+TDP N DY +V G RQE
Sbjct: 61 NHVGMGVRYNAEKKKIGMYYTTPLHEFRMKCHLCDNYYVIRTDPKNFDYELVEGCSRQEL 120
Query: 120 RWNPLENEQIVPETKEVSRKLFDDPMYKLEHGTNDMSSSKSKASHLNKLLDRQESVWKND 179
R++P + QI + ++KL D M+K EH D + ++ ++KL QE + ++D
Sbjct: 121 RFDPTDIAQIGAVDRGFTQKLAADAMFKKEHEAEDKDKAATEEGRVDKLEWIQERM-RDD 179
Query: 180 FDANRVLRDSFRKKKKQLKALQDKDNALLSKSSL-SLKLVPEHKNDIRLASL 230
F AN LR FR +KK L + +D L K S+ + +L+PE + D R+AS+
Sbjct: 180 FTANSFLRAQFRNEKKSLNETRARDANLRDKLSIGTTQLLPETEEDRRIASM 231
>sp|Q54TR4|CC130_DICDI Coiled-coil domain-containing protein 130 homolog OS=Dictyostelium
discoideum GN=DDB_G0281599 PE=3 SV=1
Length = 325
Score = 194 bits (492), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 152/242 (62%), Gaps = 22/242 (9%)
Query: 1 MGERKGTNKYYPPDYDPSVGGLNKFLGTHALRERARKLHMGIMIIRFELPYNIWCEGCNN 60
M ERK TNKYYPPD+DPS G +N++ G H LR+RARK+ GI+IIRFE+P+++WC GC
Sbjct: 1 MAERKATNKYYPPDWDPSKGSINQYRGQHHLRDRARKIDQGILIIRFEMPFSVWCLGCEC 60
Query: 61 HIGMGVRYNAEKKKVGMYYSTPVYQFRMKCHLCDSHFEIKTDPGNLDYVIVSGARRQENR 120
HIGMGVR+NAEKK V Y+++ +Y F+MKCH C + FEI+ DP N DY ++SG +++ +
Sbjct: 61 HIGMGVRFNAEKKTVDKYFTSNIYSFKMKCHQCSNQFEIQNDPKNTDYKLISGLKKRIEQ 120
Query: 121 WNPLENEQIVPET------------KEVSRKLFDDPMYKLEHGTNDMSSSKSKASHLNKL 168
+NP ++E +P + + +D + KLE+ D+ K +++ L KL
Sbjct: 121 FNPEDSE--LPSSFIIKYDDNNNNNNNNNNNDNNDTLLKLENKKLDIEKGKKESTQLEKL 178
Query: 169 LDRQESVWKNDFDANRVLRDSFRKKKK--QLKALQDKDNALLSKSSLSLKLVPEHKNDIR 226
+ + ND+ + ++R SFR+KKK Q++ + K ++ + L+ E+++DI
Sbjct: 179 QEIMTNRTINDYQLSSIMRKSFREKKKEDQIELERQKSKGIM------IPLLKENQDDID 232
Query: 227 LA 228
A
Sbjct: 233 TA 234
>sp|O60141|CWC16_SCHPO Protein saf4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=saf4 PE=3 SV=2
Length = 299
Score = 130 bits (328), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 107/183 (58%), Gaps = 8/183 (4%)
Query: 44 IIRFELPYNIWCEGCNNHIGMGVRYNAEKKKVGMYYSTPVYQFRMKCHLCDSHFEIKTDP 103
+IRFE+P+ +WC C N I G R+NA KK++G YY+T ++ F +KCHLC + ++ TDP
Sbjct: 27 VIRFEMPFPVWCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCSNPIDVHTDP 86
Query: 104 GNLDYVIVSGARRQENRWNPLENEQI--VPETKEVSRKLFDDPMYKLEHGTNDMSSSKSK 161
N +Y++ SG RR+ +E + I P E K+ D + LE S K
Sbjct: 87 KNTEYIVASGGRRK------IEPQDINERPAKAENDEKVPSDAIEALETQLTQQKSEKHN 140
Query: 162 ASHLNKLLDRQESVWKNDFDANRVLRDSFRKKKKQLKALQDKDNALLSKSSLSLKLVPEH 221
+S +N + ++ E +W + F +++ LR FR++KK K + KD +L ++++L + ++P
Sbjct: 141 SSVINFIYEKNERLWSDPFVSSQRLRKQFRERKKIEKKQEAKDLSLKNRAALDIDILPPS 200
Query: 222 KND 224
+D
Sbjct: 201 SSD 203
>sp|Q54WR5|CCD94_DICDI Coiled-coil domain-containing protein 94 homolog OS=Dictyostelium
discoideum GN=ccdc94 PE=3 SV=1
Length = 324
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 107/214 (50%), Gaps = 21/214 (9%)
Query: 1 MGERKGTNKYYPPDYDPSVGGLNKFLGTHALRERARKLHMGIMIIRFELPYNIWCEGCNN 60
MGERK +KYYPPD+DPS K R K+ LP +I C C
Sbjct: 1 MGERKVISKYYPPDFDPS-----KVAKIKVKRPTFTKVTTM-------LPMSIRCNTCGE 48
Query: 61 HIGMGVRYNAEKKKVGM--YYSTPVYQFRMKCHLCDSHFEIKTDPGNLDYVIVSGARRQE 118
+IG G ++NA+K+ V Y +Y+F ++C C + IKTDP N +YV SGA R
Sbjct: 49 YIGRGTKFNAKKETVQNEDYLGIKIYRFFLRCKKCAAELTIKTDPKNSEYVCESGATRNY 108
Query: 119 NRWNPLENEQIVPETKEVSRKLFDDPMYKLEHGTNDMSSSKSKASHLNKLLDRQESVWKN 178
W + E+ TKE + D M LE+ T SK + L+ L + + +N
Sbjct: 109 EPWKETDEEKSNRMTKEQEEE--QDAMIALENRT---LESKREMEMLDALEEIKSLNSRN 163
Query: 179 -DFDANRVLRDSFRKKKKQLKALQDKDNALLSKS 211
+ D ++L + +K++ + K LQD+++ LL KS
Sbjct: 164 SEIDTEQLLEYNLQKQELEEK-LQDEEDDLLVKS 196
>sp|Q9P7C5|CWF16_SCHPO Pre-mRNA-splicing factor cwf16 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf16 PE=1 SV=2
Length = 270
Score = 87.8 bits (216), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 83/185 (44%), Gaps = 33/185 (17%)
Query: 1 MGERKGTNKYYPPDYDPSV---GGLNKFLGTHALRERARKLHMGIMIIRFELPYNIWCEG 57
M ERK NKY PPDYDPS+ KF G + G + +R P+++ C
Sbjct: 1 MSERKVLNKYIPPDYDPSIRPPKKKKKFQGPNG----------GKLTVRLMTPFSMRCHT 50
Query: 58 CNNHIGMGVRYNAEKKKVG-MYYSTPVYQFRMKCHLCDSHFEIKTDPGNLDYVIVSGARR 116
C +I G ++NA K+K G Y+S + +F ++C C + TDP + DY SGA R
Sbjct: 51 CGEYIYKGKKFNARKEKTGEKYFSIDILRFYIRCTRCAAEITFITDPKHADYAAESGASR 110
Query: 117 ----------QENRWNPLENEQIVPETKEVSRKLFDDPMYKLEHGTNDMSSSKSKASHLN 166
QE N L +PE +D M KLE T D + L+
Sbjct: 111 NYEPWHEKRLQEYEENELAERNDIPE---------EDEMEKLEQKTLDTKRQMQISDALD 161
Query: 167 KLLDR 171
+L ++
Sbjct: 162 ELREK 166
>sp|Q9BW85|CCD94_HUMAN Coiled-coil domain-containing protein 94 OS=Homo sapiens GN=CCDC94
PE=1 SV=1
Length = 323
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 90/186 (48%), Gaps = 19/186 (10%)
Query: 1 MGERKGTNKYYPPDYDPSVGGLNKFLGTHALRERARKLHMGIMIIRFELPYNIWCEGCNN 60
M ERK NKYYPPD+DPS K ++R ++R P+N+ C+ C
Sbjct: 1 MSERKVLNKYYPPDFDPS-----KIPKLKLPKDRQ-------YVVRLMAPFNMRCKTCGE 48
Query: 61 HIGMGVRYNAEKKKVG--MYYSTPVYQFRMKCHLCDSHFEIKTDPGNLDYVIVSGARR-- 116
+I G ++NA K+ V +Y P+++F +KC C + KTDP N DY + GA R
Sbjct: 49 YIYKGKKFNARKETVQNEVYLGLPIFRFYIKCTRCLAEITFKTDPENTDYTMEHGATRNF 108
Query: 117 QENRWNPLENEQIVPETKEVSRKLFDDPMYKLEHGTNDMSSSKSKASHLNKLLDRQESVW 176
Q + E +++ KE + ++PM LE+ T D +L +L D +
Sbjct: 109 QAEKLLEEEEKRV---QKEREDEELNNPMKVLENRTKDSKLEMEVLENLQELKDLNQRQA 165
Query: 177 KNDFDA 182
DF+A
Sbjct: 166 HVDFEA 171
>sp|Q9D6J3|CCD94_MOUSE Coiled-coil domain-containing protein 94 OS=Mus musculus GN=Ccdc94
PE=1 SV=1
Length = 314
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 89/186 (47%), Gaps = 19/186 (10%)
Query: 1 MGERKGTNKYYPPDYDPSVGGLNKFLGTHALRERARKLHMGIMIIRFELPYNIWCEGCNN 60
M ERK NKYYPPD+DPS K ++R ++R P+N+ C+ C
Sbjct: 1 MSERKVLNKYYPPDFDPS-----KIPKLKLPKDRQ-------YVVRLMAPFNMRCKTCGE 48
Query: 61 HIGMGVRYNAEKKKVG--MYYSTPVYQFRMKCHLCDSHFEIKTDPGNLDYVIVSGARR-- 116
+I G ++NA K+ V Y P+++F +KC C + KTDP N DY + GA R
Sbjct: 49 YIYKGKKFNARKETVQNEAYLGLPIFRFYIKCTRCLAEITFKTDPENTDYTMEHGATRNF 108
Query: 117 QENRWNPLENEQIVPETKEVSRKLFDDPMYKLEHGTNDMSSSKSKASHLNKLLDRQESVW 176
Q + E +++ KE + ++PM LE+ T D +L +L D +
Sbjct: 109 QAEKLLEEEEKRV---QKEREDEELNNPMKVLENRTKDSKLEMEVLENLQELKDLNQRQA 165
Query: 177 KNDFDA 182
DF+A
Sbjct: 166 HVDFEA 171
>sp|P28320|CWC16_YEAST Protein CWC16 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=YJU2 PE=1 SV=1
Length = 278
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 1 MGERKGTNKYYPPDYDPSVGGLNKFLGTHALRERARKLHMGIMIIRFELPYNIWCEGCNN 60
M ERK NKYYPPDY+P L + + ++ + ++ IR P+++ C CN
Sbjct: 1 MSERKAINKYYPPDYNP----LEAEKLSRKMAKKLKTMNKSHASIRLMTPFSMRCLECNE 56
Query: 61 HIGMGVRYNAEKKKVGMYY--STPVYQFRMKCHLCDSHFEIKTDPGNLDYVIVSGARR 116
+I ++N +K+ + Y S +Y+ + C C + +TDPGN DYV+ G R
Sbjct: 57 YIPKSRKFNGKKELLKEKYLDSIKIYRLTISCPRCANSIAFRTDPGNSDYVMEVGGVR 114
>sp|Q5JET2|CDC6_PYRKO Cell division control protein 6 homolog OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=cdc6 PE=3
SV=1
Length = 415
Score = 34.3 bits (77), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 39 HMGIMIIRFELPYNIWCEG-CNNHIGMGVRYNAEK-KKVGMYYSTPVYQFRMKCHLCDSH 96
H+ + ++R E P N++ G + V++ E+ KK+ Y+ PV + C + D+H
Sbjct: 47 HILVPVLRGETPSNVFVYGKTGTGKTVTVKFVTEELKKISQKYNIPVEVIYINCEIIDTH 106
Query: 97 FEI 99
+ +
Sbjct: 107 YRV 109
>sp|A2BVP7|GLGB_PROM5 1,4-alpha-glucan branching enzyme GlgB OS=Prochlorococcus marinus
(strain MIT 9515) GN=glgB PE=3 SV=1
Length = 754
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 21/69 (30%)
Query: 113 GARRQENRWNPLENEQIVPETKEVSRKLFDDPMYKLEHGTNDMSSSKSKASHLNKLLDRQ 172
G R++ N W+ L+ E + E + R L DD LNKL +
Sbjct: 599 GQRQEWNVWDDLQWELLEYEPHKGIRNLIDD---------------------LNKLYKNE 637
Query: 173 ESVWKNDFD 181
S+WKNDFD
Sbjct: 638 PSLWKNDFD 646
>sp|Q7V299|GLGB_PROMP 1,4-alpha-glucan branching enzyme GlgB OS=Prochlorococcus marinus
subsp. pastoris (strain CCMP1986 / MED4) GN=glgB PE=3
SV=1
Length = 754
Score = 32.0 bits (71), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 21/69 (30%)
Query: 113 GARRQENRWNPLENEQIVPETKEVSRKLFDDPMYKLEHGTNDMSSSKSKASHLNKLLDRQ 172
G R++ N W+ L+ E + E + R L DD LNKL +
Sbjct: 599 GQRQEWNVWDDLQWELLEFEPHKGIRNLVDD---------------------LNKLYKNE 637
Query: 173 ESVWKNDFD 181
S+WKNDFD
Sbjct: 638 PSLWKNDFD 646
>sp|Q88VX7|CLPB_LACPL Chaperone protein ClpB OS=Lactobacillus plantarum (strain ATCC
BAA-793 / NCIMB 8826 / WCFS1) GN=clpB PE=3 SV=1
Length = 867
Score = 31.6 bits (70), Expect = 5.2, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 19/136 (13%)
Query: 112 SGARRQENRWNPLENEQIVPETKEVSRKLFDDPMYKLEHGTNDMSSSKSKASHLNKLLDR 171
S R E NP E +Q+ +++ R ++ K E T+D S + +L D
Sbjct: 400 SAEIRVEMNSNPTELDQV---NRQLMRLEVEEAALKKE--TDDAS--------VKRLADV 446
Query: 172 QESVWKNDFDANRVLRDSFRKKKKQLKALQDKDNALLSKSSLSLKLVPEHKNDIRLASLY 231
Q+ + + R L + + +KK L+AL DK +A L K+ L+ +N+ L
Sbjct: 447 QKELASAK-EKQRTLSERWDSEKKSLQALSDKKSA-LDKAKHDLE---NAENNYDLEQAA 501
Query: 232 KYQH-VKPKLNVKLKA 246
K QH PKL +LKA
Sbjct: 502 KLQHGTIPKLEQELKA 517
>sp|Q8TZY2|SMC_PYRFU Chromosome partition protein Smc OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=smc PE=1 SV=2
Length = 1177
Score = 31.6 bits (70), Expect = 5.6, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 116 RQENRWNPLE---NEQIVPETKEVSRKLFDDPMYKLEHGTNDMSSSKSKASHLNKLLDRQ 172
R E+R LE NE+++P + ++ + + K+ N++S ++ LNK L++
Sbjct: 803 RIESRIESLESRLNEELLPRKASLEEEI-EGLVNKINALKNNISENEKALELLNKELEKL 861
Query: 173 ESVWKNDFDANRVLRDSFRKKKKQLKALQDKDNALLSK 210
+S+ +N R LR+ +K ++ + L++K L K
Sbjct: 862 KSIEENIKGEIRTLREKRKKLEEDISKLREKKEVLQRK 899
>sp|P26831|NAGH_CLOPE Hyaluronoglucosaminidase OS=Clostridium perfringens (strain 13 /
Type A) GN=nagH PE=1 SV=2
Length = 1628
Score = 31.2 bits (69), Expect = 7.0, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 13/108 (12%)
Query: 153 NDMSSSKSKASHLNKLLDRQESVWKNDFDANRVLRDSFRKKKKQLKALQDKDNALLSKSS 212
N M +++ S L + D ++W N +A+ DSF+ D A + SS
Sbjct: 443 NPMQQAEANKSALFAIADYAWNIWDNKEEADENWNDSFK--------YMDHGTAEETNSS 494
Query: 213 LSLKLVPEH----KNDIRLASLYKYQHVKPKLNV-KLKAPSSSGVSRD 255
L+L+ + +H D R+ L + + PKL K K S + + D
Sbjct: 495 LALREISKHMINQNMDGRVRPLQESVELAPKLEAFKQKYDSGASIKED 542
>sp|Q59U81|SWR1_CANAL Helicase SWR1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876)
GN=SWR1 PE=3 SV=1
Length = 1641
Score = 31.2 bits (69), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 175 VWKNDFDANRVLRDS----FRKKK--KQLKALQDK----DNALLSKSSLSLKLVPEHKND 224
VW + + N + DS F+KKK +Q K L DK N L S L LV + +++
Sbjct: 114 VWDKEIENNSNI-DSLPLRFQKKKLAEQNKLLDDKFSIRQNVLASSKMLEESLVNKTRDE 172
Query: 225 IRLASLYKYQHVKPKLNVKLKAPSSSG 251
+++ S +K + K KLK PS +
Sbjct: 173 VKIESTFKAIQSQEKAGSKLKTPSQTS 199
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,902,558
Number of Sequences: 539616
Number of extensions: 4175311
Number of successful extensions: 10766
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 10695
Number of HSP's gapped (non-prelim): 86
length of query: 257
length of database: 191,569,459
effective HSP length: 115
effective length of query: 142
effective length of database: 129,513,619
effective search space: 18390933898
effective search space used: 18390933898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)