Query psy10064
Match_columns 257
No_of_seqs 154 out of 369
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 16:58:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10064.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10064hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zso_A Hypothetical protein; s 90.3 0.33 1.1E-05 40.8 4.9 70 40-113 21-98 (164)
2 1a7i_A QCRP2 (LIM1); LIM domai 82.7 0.81 2.8E-05 32.6 2.8 38 52-98 7-45 (81)
3 2iyb_E Testin, TESS, TES; LIM 80.0 1.1 3.7E-05 30.8 2.5 39 51-98 1-43 (65)
4 1nyp_A Pinch protein; LIM doma 74.9 1.1 3.7E-05 30.6 1.3 47 51-113 4-51 (66)
5 2cu8_A Cysteine-rich protein 2 65.7 5.8 0.0002 27.6 3.6 40 50-98 7-47 (76)
6 1x61_A Thyroid receptor intera 62.9 4.9 0.00017 27.6 2.7 49 50-113 3-53 (72)
7 2db6_A SH3 and cysteine rich d 60.5 12 0.0004 26.7 4.4 18 44-63 22-39 (74)
8 2k5c_A Uncharacterized protein 58.3 3.5 0.00012 31.3 1.2 51 53-104 9-68 (95)
9 1pft_A TFIIB, PFTFIIBN; N-term 58.2 3.1 0.00011 27.5 0.8 25 88-113 6-30 (50)
10 1x6a_A LIMK-2, LIM domain kina 58.0 3.5 0.00012 29.1 1.2 38 51-98 14-52 (81)
11 1x68_A FHL5 protein; four-and- 57.4 4.2 0.00014 28.5 1.5 48 51-113 4-55 (76)
12 2cur_A Skeletal muscle LIM-pro 57.2 4.3 0.00015 27.7 1.5 38 51-98 4-42 (69)
13 2ehe_A Four and A half LIM dom 57.2 4.6 0.00016 28.6 1.7 48 51-113 14-63 (82)
14 1lko_A Rubrerythrin all-iron(I 55.4 6 0.0002 33.3 2.4 39 38-96 142-180 (191)
15 2xqn_T Testin, TESS; metal-bin 54.1 7.1 0.00024 29.8 2.5 12 87-98 63-74 (126)
16 2kdx_A HYPA, hydrogenase/ureas 52.0 5.5 0.00019 30.9 1.5 36 41-96 63-99 (119)
17 1x63_A Skeletal muscle LIM-pro 51.3 6.2 0.00021 27.8 1.6 41 49-98 12-54 (82)
18 1x4k_A Skeletal muscle LIM-pro 50.4 8.5 0.00029 26.2 2.2 39 51-98 4-44 (72)
19 2l4z_A DNA endonuclease RBBP8, 49.1 6 0.00021 30.8 1.3 42 48-98 57-99 (123)
20 1wig_A KIAA1808 protein; LIM d 48.8 3.6 0.00012 28.9 -0.0 38 51-98 4-42 (73)
21 2d8x_A Protein pinch; LIM doma 48.6 8.3 0.00028 26.3 1.8 38 51-98 4-42 (70)
22 2cor_A Pinch protein; LIM doma 48.0 8.2 0.00028 27.3 1.8 38 51-98 14-52 (79)
23 2d8z_A Four and A half LIM dom 47.8 7.4 0.00025 26.5 1.5 37 51-97 4-41 (70)
24 2egq_A FHL1 protein; LIM domai 47.5 10 0.00035 26.3 2.2 39 51-98 14-57 (77)
25 3a43_A HYPD, hydrogenase nicke 47.3 7.3 0.00025 31.3 1.6 19 42-61 61-79 (139)
26 1wyh_A SLIM 2, skeletal muscle 47.2 10 0.00035 25.8 2.2 39 51-98 4-44 (72)
27 1iml_A CRIP, cysteine rich int 46.1 7 0.00024 27.2 1.1 36 54-98 2-38 (76)
28 2d8y_A Eplin protein; LIM doma 45.9 5.9 0.0002 28.7 0.7 43 47-98 10-53 (91)
29 1yuz_A Nigerythrin; rubrythrin 45.8 5.9 0.0002 33.8 0.9 25 52-96 171-195 (202)
30 2dj7_A Actin-binding LIM prote 45.3 8 0.00027 27.6 1.4 38 52-98 15-53 (80)
31 2dar_A PDZ and LIM domain prot 45.2 12 0.0004 27.0 2.3 38 51-98 24-62 (90)
32 1twf_J DNA-directed RNA polyme 43.9 7.6 0.00026 28.3 1.1 15 50-64 2-16 (70)
33 1x3h_A Leupaxin; paxillin fami 43.9 8.4 0.00029 26.9 1.3 38 51-98 14-52 (80)
34 3na7_A HP0958; flagellar bioge 43.6 9.2 0.00032 33.4 1.8 54 33-100 182-235 (256)
35 3flo_B DNA polymerase alpha ca 43.5 15 0.00052 31.6 3.1 40 49-97 19-59 (206)
36 1dl6_A Transcription factor II 43.4 8.2 0.00028 26.7 1.1 24 88-112 12-35 (58)
37 2cup_A Skeletal muscle LIM-pro 42.5 12 0.00042 27.2 2.1 38 51-97 4-43 (101)
38 1x4l_A Skeletal muscle LIM-pro 42.4 9.8 0.00034 26.1 1.5 39 51-98 4-46 (72)
39 1g47_A Pinch protein; LIM doma 41.8 9.1 0.00031 26.5 1.2 40 50-98 9-50 (77)
40 2dlo_A Thyroid receptor-intera 40.7 11 0.00036 26.6 1.4 38 51-98 14-52 (81)
41 2co8_A NEDD9 interacting prote 39.3 14 0.00048 26.3 1.9 38 52-98 15-53 (82)
42 4esj_A Type-2 restriction enzy 38.5 14 0.00049 33.0 2.2 51 52-116 34-85 (257)
43 1tot_A CREB-binding protein; z 38.1 11 0.00037 25.5 1.0 12 51-62 5-16 (52)
44 2fnf_X Putative RAS effector N 37.1 18 0.00063 25.8 2.2 12 52-63 35-46 (72)
45 1x0t_A Ribonuclease P protein 37.0 32 0.0011 26.9 3.8 44 53-103 66-110 (120)
46 2cuq_A Four and A half LIM dom 36.8 18 0.00061 25.2 2.1 38 50-97 13-51 (80)
47 1faq_A RAF-1; transferase, ser 36.8 19 0.00065 23.4 2.1 14 52-65 14-27 (52)
48 2k3r_A Ribonuclease P protein 36.7 31 0.001 27.2 3.7 45 53-104 61-106 (123)
49 2l3k_A Rhombotin-2, linker, LI 36.0 16 0.00054 28.0 1.8 38 51-97 5-46 (123)
50 1x64_A Alpha-actinin-2 associa 33.7 12 0.00042 26.8 0.8 41 48-98 21-62 (89)
51 1rfh_A RAS association (ralgds 32.2 25 0.00087 23.9 2.2 12 51-62 21-32 (59)
52 3pwf_A Rubrerythrin; non heme 31.1 17 0.00059 30.1 1.4 35 38-95 127-161 (170)
53 3lti_A DNA-directed RNA polyme 30.9 52 0.0018 30.0 4.6 50 60-114 2-54 (296)
54 1wg2_A Zinc finger (AN1-like) 30.0 29 0.001 24.8 2.3 13 51-63 14-26 (64)
55 2l9z_A PR domain zinc finger p 29.1 12 0.00042 24.3 0.1 12 50-61 9-20 (39)
56 1ef4_A Subunit N, DNA-directed 29.0 14 0.00048 25.7 0.4 13 51-63 2-14 (55)
57 1twf_L ABC10-alpha, DNA-direct 28.9 12 0.00041 27.0 0.0 38 49-104 25-62 (70)
58 3k7a_M Transcription initiatio 28.4 15 0.00052 33.4 0.7 26 87-112 21-47 (345)
59 3k1f_M Transcription initiatio 28.3 14 0.00047 31.8 0.3 26 87-112 21-47 (197)
60 4bbr_M Transcription initiatio 27.7 13 0.00043 34.1 -0.0 28 85-112 19-47 (345)
61 1v9x_A Poly (ADP-ribose) polym 27.3 26 0.00089 27.4 1.8 13 54-66 22-34 (114)
62 2lcq_A Putative toxin VAPC6; P 27.1 26 0.00088 28.2 1.8 31 29-61 105-141 (165)
63 1x62_A C-terminal LIM domain p 25.8 16 0.00056 25.5 0.3 39 50-98 13-52 (79)
64 2k4x_A 30S ribosomal protein S 24.5 40 0.0014 23.0 2.1 27 53-96 19-45 (55)
65 1j2o_A FLIN2, fusion of rhombo 24.4 35 0.0012 25.6 2.0 9 55-63 6-14 (114)
66 3fsa_A Azurin; copper, cupredo 23.8 81 0.0028 25.0 4.1 44 7-65 69-120 (125)
67 2l6l_A DNAJ homolog subfamily 23.7 51 0.0017 26.2 2.9 37 50-100 110-146 (155)
68 1b8t_A Protein (CRP1); LIM dom 23.6 29 0.001 28.4 1.5 37 53-98 8-45 (192)
69 1v6g_A Actin binding LIM prote 22.8 36 0.0012 23.7 1.6 38 51-98 14-52 (81)
70 1ltl_A DNA replication initiat 22.0 30 0.001 30.4 1.4 43 53-109 135-177 (279)
71 2rgt_A Fusion of LIM/homeobox 21.4 32 0.0011 27.6 1.3 15 50-64 4-18 (169)
72 3f6q_B LIM and senescent cell 21.0 34 0.0012 22.8 1.2 43 47-98 6-50 (72)
73 3uej_A NPKC-delta, protein kin 20.8 49 0.0017 22.6 2.0 12 52-63 20-31 (65)
74 2gmg_A Hypothetical protein PF 20.7 38 0.0013 26.4 1.5 12 51-62 66-77 (105)
75 1wfh_A Zinc finger (AN1-like) 20.3 59 0.002 23.2 2.3 13 51-63 14-26 (64)
76 2czr_A TBP-interacting protein 20.0 48 0.0016 28.7 2.1 17 83-100 151-167 (226)
No 1
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=90.28 E-value=0.33 Score=40.84 Aligned_cols=70 Identities=9% Similarity=0.065 Sum_probs=46.6
Q ss_pred CCeeEEE----EeceeeeecCCCCccccccceeeeecc-cc-ccccceeeEEEEEEcCCCCceeE--EeeCCCCCCeeec
Q psy10064 40 MGIMIIR----FELPYNIWCEGCNNHIGMGVRYNAEKK-KV-GMYYSTPVYQFRMKCHLCDSHFE--IKTDPGNLDYVIV 111 (257)
Q Consensus 40 ~g~~~VR----fe~Pf~i~C~~C~~~I~kG~rfNA~K~-~v-g~Y~st~I~~F~~kC~~C~~~i~--i~TDPkn~dYv~~ 111 (257)
.|+-.|+ |..-|.|.|..|++.-.+ +-+|..-+ .+ |. =| -=.|.+||..|..+.+ |...|.-+.|..+
T Consensus 21 enVt~L~p~~~~~~~fkvkC~~C~E~~~k-v~v~~~e~~ei~gs-RG--~aNfv~KCk~C~re~Si~i~~~~~~~~y~~~ 96 (164)
T 1zso_A 21 ENVKRLFCDDEYLWIFNIRDSTSSLTRDN-IQFRKTDILEIPNS-RG--TANFMIKWTEYPKYSTINFVNTKNSCSYEEV 96 (164)
T ss_dssp ESEEEEECCTTCCEEEEEEETTSSCEEEE-EEECTTCBEECTTS-SC--EESEEECCSSSSCCEEEEEECCTTTTEEEGG
T ss_pred cCcceeecCCCcEEEEEEEECCCCcccCC-EEEcchheeecCCC-Cc--ceeEEEeccccCCcceEEEEeCCCCcccccc
Confidence 5677777 667799999999998877 88887432 23 31 12 2369999999977655 4455421267764
Q ss_pred cC
Q psy10064 112 SG 113 (257)
Q Consensus 112 ~G 113 (257)
..
T Consensus 97 d~ 98 (164)
T 1zso_A 97 NN 98 (164)
T ss_dssp GT
T ss_pred cC
Confidence 44
No 2
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=82.74 E-value=0.81 Score=32.65 Aligned_cols=38 Identities=13% Similarity=0.397 Sum_probs=27.1
Q ss_pred eeecCCCCccccccceeeeeccccc-cccceeeEEEEEEcCCCCceeE
Q psy10064 52 NIWCEGCNNHIGMGVRYNAEKKKVG-MYYSTPVYQFRMKCHLCDSHFE 98 (257)
Q Consensus 52 ~i~C~~C~~~I~kG~rfNA~K~~vg-~Y~st~I~~F~~kC~~C~~~i~ 98 (257)
.-.|..|+..|+.|....| .| .|+.. -|+|..|...|.
T Consensus 7 ~~~C~~C~~~I~~~~~~~a----~~~~~H~~-----CF~C~~C~~~L~ 45 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC----DGRSFHRC-----CFLCMVCRKNLD 45 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE----TTEEEESS-----SEECSSSCCEEC
T ss_pred CCcCcCcCccccCceeEEe----CCcccccc-----cCccCCCCCCCC
Confidence 6789999999998766554 34 34433 478999998874
No 3
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=80.00 E-value=1.1 Score=30.81 Aligned_cols=39 Identities=21% Similarity=0.472 Sum_probs=25.0
Q ss_pred eeeecCCCCcccccc-ceeeeecccccc-cc--ceeeEEEEEEcCCCCceeE
Q psy10064 51 YNIWCEGCNNHIGMG-VRYNAEKKKVGM-YY--STPVYQFRMKCHLCDSHFE 98 (257)
Q Consensus 51 f~i~C~~C~~~I~kG-~rfNA~K~~vg~-Y~--st~I~~F~~kC~~C~~~i~ 98 (257)
|+-+|.+|+..|+-+ ....| .|. |+ .. -|+|..|...|.
T Consensus 1 fa~~C~~C~~~I~~~~~~v~a----~~~~wH~~~~-----CF~C~~C~~~L~ 43 (65)
T 2iyb_E 1 HAVVCQGCHNAIDPEVQRVTY----NNFSWHASTE-----CFLCSCCSKCLI 43 (65)
T ss_dssp -CEECTTTSSEECTTSCEEEE----TTEEEETTTT-----TSBCTTTCCBCT
T ss_pred CcCCCcCCCCeeccCceEEEE----CCCccCCCCC-----CEECCCCCCcCC
Confidence 677999999999964 33322 132 22 11 278999998873
No 4
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=74.90 E-value=1.1 Score=30.59 Aligned_cols=47 Identities=23% Similarity=0.384 Sum_probs=31.1
Q ss_pred eeeecCCCCccccccceeeeeccccc-cccceeeEEEEEEcCCCCceeEEeeCCCCCCeeeccC
Q psy10064 51 YNIWCEGCNNHIGMGVRYNAEKKKVG-MYYSTPVYQFRMKCHLCDSHFEIKTDPGNLDYVIVSG 113 (257)
Q Consensus 51 f~i~C~~C~~~I~kG~rfNA~K~~vg-~Y~st~I~~F~~kC~~C~~~i~i~TDPkn~dYv~~~G 113 (257)
|...|..|+..|+ |...+| .| .|+.. -|+|..|...|. ...|....|
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a----~~~~~H~~-----CF~C~~C~~~L~------~~~~~~~~g 51 (66)
T 1nyp_A 4 GVPICGACRRPIE-GRVVNA----MGKQWHVE-----HFVCAKCEKPFL------GHRHYERKG 51 (66)
T ss_dssp CCCEETTTTEECC-SCEECC----TTSBEETT-----TCBCTTTCCBCS------SSCCEEETT
T ss_pred CCCCCcccCCEec-ceEEEE----CccccccC-----cCEECCCCCCCC------CCceEeECC
Confidence 6789999999998 654433 24 34433 378999988874 235655544
No 5
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.68 E-value=5.8 Score=27.62 Aligned_cols=40 Identities=15% Similarity=0.434 Sum_probs=28.2
Q ss_pred eeeeecCCCCccccccceeeeeccccc-cccceeeEEEEEEcCCCCceeE
Q psy10064 50 PYNIWCEGCNNHIGMGVRYNAEKKKVG-MYYSTPVYQFRMKCHLCDSHFE 98 (257)
Q Consensus 50 Pf~i~C~~C~~~I~kG~rfNA~K~~vg-~Y~st~I~~F~~kC~~C~~~i~ 98 (257)
.|...|..|+..|+-|...+| .| .|+.. -|+|..|...|.
T Consensus 7 ~~~~~C~~C~~~I~~~~~v~a----~~~~~H~~-----CF~C~~C~~~L~ 47 (76)
T 2cu8_A 7 GMASKCPKCDKTVYFAEKVSS----LGKDWHKF-----CLKCERCSKTLT 47 (76)
T ss_dssp CCCCBCTTTCCBCCTTTEEEE----TTEEEETT-----TCBCSSSCCBCC
T ss_pred CCCCCCcCCCCEeECCeEEEE----CCeEeeCC-----CCCCCCCCCccC
Confidence 366789999999997765544 24 24432 378999988875
No 6
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.88 E-value=4.9 Score=27.59 Aligned_cols=49 Identities=16% Similarity=0.382 Sum_probs=31.0
Q ss_pred eeeeecCCCCccccc-cceeeeeccccc-cccceeeEEEEEEcCCCCceeEEeeCCCCCCeeeccC
Q psy10064 50 PYNIWCEGCNNHIGM-GVRYNAEKKKVG-MYYSTPVYQFRMKCHLCDSHFEIKTDPGNLDYVIVSG 113 (257)
Q Consensus 50 Pf~i~C~~C~~~I~k-G~rfNA~K~~vg-~Y~st~I~~F~~kC~~C~~~i~i~TDPkn~dYv~~~G 113 (257)
+|..+|..|+..|+- +....| .| .|+.. -|+|..|...|. ...|....|
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a----~~~~~H~~-----CF~C~~C~~~L~------~~~~~~~~~ 53 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVA----LDRVFHVG-----CFVCSTCRAQLR------GQHFYAVER 53 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEEC----SSSEECTT-----TCBCSSSCCBCT------TSCEEESSS
T ss_pred CCCCCCccCCCccCCCceEEEE----CCCeEccc-----CCcccccCCcCC------cCcCEeeCC
Confidence 467899999999985 333333 23 34433 378999998873 344655444
No 7
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.53 E-value=12 Score=26.73 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=13.1
Q ss_pred EEEEeceeeeecCCCCcccc
Q psy10064 44 IIRFELPYNIWCEGCNNHIG 63 (257)
Q Consensus 44 ~VRfe~Pf~i~C~~C~~~I~ 63 (257)
...|.. ..||..|+..|.
T Consensus 22 ~~~f~~--pt~C~~C~~~lw 39 (74)
T 2db6_A 22 DHFFKK--PKFCDVCARMIV 39 (74)
T ss_dssp EEECSS--CEECSSSCCEEC
T ss_pred EeeCCC--CcCchhcChhhc
Confidence 344544 489999999884
No 8
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=58.31 E-value=3.5 Score=31.35 Aligned_cols=51 Identities=25% Similarity=0.368 Sum_probs=30.2
Q ss_pred eecCCCCcccc------c-cceeeeeccc--cccccceeeEEEEEEcCCCCceeEEeeCCC
Q psy10064 53 IWCEGCNNHIG------M-GVRYNAEKKK--VGMYYSTPVYQFRMKCHLCDSHFEIKTDPG 104 (257)
Q Consensus 53 i~C~~C~~~I~------k-G~rfNA~K~~--vg~Y~st~I~~F~~kC~~C~~~i~i~TDPk 104 (257)
..|.-||..+- + =+.=|++--- -+.+++. +=.|.||||.|+-++.=++=|.
T Consensus 9 ~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~-~e~F~FkCP~CgEEFyG~~Lp~ 68 (95)
T 2k5c_A 9 AKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQ-VEEFVFKCPVCGEEFYGKTLPR 68 (95)
T ss_dssp EECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHH-HHHSEEECTTTCCEEETTSSCT
T ss_pred ccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHH-HHHHhhcCCCccHHHhcccCCh
Confidence 46888987432 1 1122443211 1345543 5578999999999997555443
No 9
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=58.17 E-value=3.1 Score=27.51 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=18.8
Q ss_pred EEcCCCCceeEEeeCCCCCCeeeccC
Q psy10064 88 MKCHLCDSHFEIKTDPGNLDYVIVSG 113 (257)
Q Consensus 88 ~kC~~C~~~i~i~TDPkn~dYv~~~G 113 (257)
+.|+.|++. .+..||..+++++..=
T Consensus 6 ~~CP~C~~~-~l~~d~~~gelvC~~C 30 (50)
T 1pft_A 6 KVCPACESA-ELIYDPERGEIVCAKC 30 (50)
T ss_dssp CSCTTTSCC-CEEEETTTTEEEESSS
T ss_pred EeCcCCCCc-ceEEcCCCCeEECccc
Confidence 479999883 4566899888888764
No 10
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.03 E-value=3.5 Score=29.13 Aligned_cols=38 Identities=24% Similarity=0.495 Sum_probs=26.2
Q ss_pred eeeecCCCCccccccceeeeeccccc-cccceeeEEEEEEcCCCCceeE
Q psy10064 51 YNIWCEGCNNHIGMGVRYNAEKKKVG-MYYSTPVYQFRMKCHLCDSHFE 98 (257)
Q Consensus 51 f~i~C~~C~~~I~kG~rfNA~K~~vg-~Y~st~I~~F~~kC~~C~~~i~ 98 (257)
|...|..|+..|+ |....| .| .|+.. -|+|..|...|.
T Consensus 14 ~~~~C~~C~~~I~-~~~~~a----~~~~~H~~-----CF~C~~C~~~L~ 52 (81)
T 1x6a_A 14 FGEFCHGCSLLMT-GPFMVA----GEFKYHPE-----CFACMSCKVIIE 52 (81)
T ss_dssp SSCBCTTTCCBCC-SCCBCC----TTCCBCTT-----SCBCTTTCCBCC
T ss_pred cCCcCccCCCCcC-ceEEEE----CCceeccc-----cCCccCCCCccC
Confidence 5668999999999 644333 24 35533 478999988774
No 11
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.38 E-value=4.2 Score=28.47 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=29.8
Q ss_pred eeeecCCCCccccc-c--ceeeeeccccc-cccceeeEEEEEEcCCCCceeEEeeCCCCCCeeeccC
Q psy10064 51 YNIWCEGCNNHIGM-G--VRYNAEKKKVG-MYYSTPVYQFRMKCHLCDSHFEIKTDPGNLDYVIVSG 113 (257)
Q Consensus 51 f~i~C~~C~~~I~k-G--~rfNA~K~~vg-~Y~st~I~~F~~kC~~C~~~i~i~TDPkn~dYv~~~G 113 (257)
|...|..|+..|+- | ....| .| .|+.. -|+|..|...|. +..|.+..|
T Consensus 4 ~~~~C~~C~~~I~~~g~~~~~~a----~~~~wH~~-----CF~C~~C~~~L~------~~~f~~~~g 55 (76)
T 1x68_A 4 GSSGCVACSKPISGLTGAKFICF----QDSQWHSE-----CFNCGKCSVSLV------GKGFLTQNK 55 (76)
T ss_dssp CCCCCTTTCCCCCTTTTCCEEEE----TTEEEEGG-----GCBCTTTCCBCS------SSCEEEETT
T ss_pred cCCCCccCCCcccCCCCceeEEE----CCcccCcc-----cCChhhCCCcCC------CCceEeECC
Confidence 66789999999984 1 22222 23 23332 378999988874 445665554
No 12
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.21 E-value=4.3 Score=27.74 Aligned_cols=38 Identities=16% Similarity=0.276 Sum_probs=25.0
Q ss_pred eeeecCCCCccccccceeeeeccccc-cccceeeEEEEEEcCCCCceeE
Q psy10064 51 YNIWCEGCNNHIGMGVRYNAEKKKVG-MYYSTPVYQFRMKCHLCDSHFE 98 (257)
Q Consensus 51 f~i~C~~C~~~I~kG~rfNA~K~~vg-~Y~st~I~~F~~kC~~C~~~i~ 98 (257)
+..+|..|+..|+ |....| .| .|+.. -|+|..|...|.
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a----~~~~~H~~-----CF~C~~C~~~L~ 42 (69)
T 2cur_A 4 GSSGCVKCNKAIT-SGGITY----QDQPWHAD-----CFVCVTCSKKLA 42 (69)
T ss_dssp CCCCCSSSCCCCC-TTCEEE----TTEEECTT-----TTBCTTTCCBCT
T ss_pred CcCCCcccCCEeC-cceEEE----CccccccC-----cCEECCCCCCCC
Confidence 5678999999997 432222 24 24432 368999998875
No 13
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.19 E-value=4.6 Score=28.56 Aligned_cols=48 Identities=13% Similarity=0.335 Sum_probs=30.0
Q ss_pred eeeecCCCCccccc-cceeeeeccccc-cccceeeEEEEEEcCCCCceeEEeeCCCCCCeeeccC
Q psy10064 51 YNIWCEGCNNHIGM-GVRYNAEKKKVG-MYYSTPVYQFRMKCHLCDSHFEIKTDPGNLDYVIVSG 113 (257)
Q Consensus 51 f~i~C~~C~~~I~k-G~rfNA~K~~vg-~Y~st~I~~F~~kC~~C~~~i~i~TDPkn~dYv~~~G 113 (257)
|+.+|.+|+..|+- |....| .| .|+.. -|+|..|...|. +..|.+..|
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a----~~~~~H~~-----CF~C~~C~~~L~------~~~f~~~~~ 63 (82)
T 2ehe_A 14 FANTCAECQQLIGHDSRELFY----EDRHFHEG-----CFRCCRCQRSLA------DEPFTCQDS 63 (82)
T ss_dssp CSCBCTTTCCBCCSSCCBCCC----SSCCCBTT-----TSBCTTTCCBCS------SCCEEEETT
T ss_pred cCCcCccCCCccccCcEEEEe----CCcccccc-----CCeecCCCCccC------CCccEeeCC
Confidence 56789999999984 322222 23 35433 478999988775 334655544
No 14
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=55.43 E-value=6 Score=33.30 Aligned_cols=39 Identities=21% Similarity=0.529 Sum_probs=24.9
Q ss_pred hcCCeeEEEEeceeeeecCCCCccccccceeeeeccccccccceeeEEEEEEcCCCCce
Q psy10064 38 LHMGIMIIRFELPYNIWCEGCNNHIGMGVRYNAEKKKVGMYYSTPVYQFRMKCHLCDSH 96 (257)
Q Consensus 38 ~~~g~~~VRfe~Pf~i~C~~C~~~I~kG~rfNA~K~~vg~Y~st~I~~F~~kC~~C~~~ 96 (257)
+..|....+-+|+ --.|..|| ||+-|. ..|- +||.|+.+
T Consensus 142 l~~~~~~~~~~~~-~~~C~~CG-~~~~g~-------------~~p~-----~CP~C~~~ 180 (191)
T 1lko_A 142 IKEGRVFLREQAT-KWRCRNCG-YVHEGT-------------GAPE-----LCPACAHP 180 (191)
T ss_dssp HHHTCSSEEEEEE-EEEETTTC-CEEEEE-------------ECCS-----BCTTTCCB
T ss_pred hhcccccccCCCc-eEEECCCC-CEeeCC-------------CCCC-----CCCCCcCC
Confidence 4455544454444 35699999 677774 2332 89999885
No 15
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=54.11 E-value=7.1 Score=29.77 Aligned_cols=12 Identities=17% Similarity=0.647 Sum_probs=7.3
Q ss_pred EEEcCCCCceeE
Q psy10064 87 RMKCHLCDSHFE 98 (257)
Q Consensus 87 ~~kC~~C~~~i~ 98 (257)
--+|..|...|.
T Consensus 63 ~~~C~~C~~~I~ 74 (126)
T 2xqn_T 63 AVVCQGCHNAID 74 (126)
T ss_dssp CCBCTTTCSBCC
T ss_pred CccCcccCCcCC
Confidence 346666666665
No 16
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=52.00 E-value=5.5 Score=30.93 Aligned_cols=36 Identities=19% Similarity=0.431 Sum_probs=25.2
Q ss_pred CeeEEEEeceeeeecCCCCccccccceeeeeccccccccceeeEEEEE-EcCCCCce
Q psy10064 41 GIMIIRFELPYNIWCEGCNNHIGMGVRYNAEKKKVGMYYSTPVYQFRM-KCHLCDSH 96 (257)
Q Consensus 41 g~~~VRfe~Pf~i~C~~C~~~I~kG~rfNA~K~~vg~Y~st~I~~F~~-kC~~C~~~ 96 (257)
-.|.|. +.|-..||..||...-- . . +.. .||.|+++
T Consensus 63 a~L~i~-~~p~~~~C~~CG~~~e~-~----------~--------~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 63 AILDIV-DEKVELECKDCSHVFKP-N----------A--------LDYGVCEKCHSK 99 (119)
T ss_dssp CCEEEE-EECCEEECSSSSCEECS-C----------C--------STTCCCSSSSSC
T ss_pred cEEEEE-eccceEEcCCCCCEEeC-C----------C--------CCCCcCccccCC
Confidence 357776 78999999999864321 1 1 246 89999885
No 17
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.33 E-value=6.2 Score=27.78 Aligned_cols=41 Identities=20% Similarity=0.361 Sum_probs=26.3
Q ss_pred ceeeeecCCCCccccccce-eeeecccccc-ccceeeEEEEEEcCCCCceeE
Q psy10064 49 LPYNIWCEGCNNHIGMGVR-YNAEKKKVGM-YYSTPVYQFRMKCHLCDSHFE 98 (257)
Q Consensus 49 ~Pf~i~C~~C~~~I~kG~r-fNA~K~~vg~-Y~st~I~~F~~kC~~C~~~i~ 98 (257)
..|+..|..|+..|+-+.+ ..| .|. |+.. -|+|..|...|.
T Consensus 12 ~~~~~~C~~C~~~I~~~~~~~~a----~~~~~H~~-----CF~C~~C~~~L~ 54 (82)
T 1x63_A 12 REDSPKCKGCFKAIVAGDQNVEY----KGTVWHKD-----CFTCSNCKQVIG 54 (82)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEC----SSCEEETT-----TCCCSSSCCCCT
T ss_pred cccCCcCccCCcccccCceEEEE----Cccccccc-----cCchhhCCCccC
Confidence 3577899999999987543 222 232 3322 267888887763
No 18
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.38 E-value=8.5 Score=26.24 Aligned_cols=39 Identities=23% Similarity=0.450 Sum_probs=24.9
Q ss_pred eeeecCCCCcccccc-ceeeeeccccc-cccceeeEEEEEEcCCCCceeE
Q psy10064 51 YNIWCEGCNNHIGMG-VRYNAEKKKVG-MYYSTPVYQFRMKCHLCDSHFE 98 (257)
Q Consensus 51 f~i~C~~C~~~I~kG-~rfNA~K~~vg-~Y~st~I~~F~~kC~~C~~~i~ 98 (257)
|+..|..|+..|+-+ ....| .| .|+.. -|+|..|...|.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a----~~~~~H~~-----CF~C~~C~~~L~ 44 (72)
T 1x4k_A 4 GSSGCQECKKTIMPGTRKMEY----KGSSWHET-----CFICHRCQQPIG 44 (72)
T ss_dssp CCCCBSSSCCCCCSSSCEEEE----TTEEEETT-----TTCCSSSCCCCC
T ss_pred cCCCCccCCCcccCCceEEEE----CcCeeccc-----CCcccccCCccC
Confidence 678999999999864 33333 23 23322 367888887663
No 19
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=49.10 E-value=6 Score=30.82 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=28.2
Q ss_pred eceeeeecCCCCccccccceeeeecccccc-ccceeeEEEEEEcCCCCceeE
Q psy10064 48 ELPYNIWCEGCNNHIGMGVRYNAEKKKVGM-YYSTPVYQFRMKCHLCDSHFE 98 (257)
Q Consensus 48 e~Pf~i~C~~C~~~I~kG~rfNA~K~~vg~-Y~st~I~~F~~kC~~C~~~i~ 98 (257)
...|.-.|.+|+..|+-+....| .|. |+.. -|+|..|...|.
T Consensus 57 ~~~~~~~C~~C~~~I~~~~~v~a----~~~~wH~~-----CF~C~~C~~~L~ 99 (123)
T 2l4z_A 57 GGLSWKRCAGCGGKIADRFLLYA----MDSYWHSR-----CLKCSSCQAQLG 99 (123)
T ss_dssp SCSSCSBBSSSSSBCCSSSEEEE----TTEEEETT-----TSBCTTTCCBGG
T ss_pred cCccCCcCcCCCCCcCCcEEEEe----CCcEEccc-----ccCcCcCCCccc
Confidence 35577899999999985433333 242 3322 378999988775
No 20
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.78 E-value=3.6 Score=28.85 Aligned_cols=38 Identities=21% Similarity=0.395 Sum_probs=25.0
Q ss_pred eeeecCCCCccccccceeeeeccccc-cccceeeEEEEEEcCCCCceeE
Q psy10064 51 YNIWCEGCNNHIGMGVRYNAEKKKVG-MYYSTPVYQFRMKCHLCDSHFE 98 (257)
Q Consensus 51 f~i~C~~C~~~I~kG~rfNA~K~~vg-~Y~st~I~~F~~kC~~C~~~i~ 98 (257)
|...|.+|+..|+ |... ...| .|+.. -|+|..|...|.
T Consensus 4 ~~~~C~~C~~~I~-~~~v----~a~~~~wH~~-----CF~C~~C~~~L~ 42 (73)
T 1wig_A 4 GSSGCDSCEKYIT-GRVL----EAGEKHYHPS-----CALCVRCGQMFA 42 (73)
T ss_dssp SCCSCSSSCCCCS-SCCB----CCSSCCBCTT-----TSCCSSSCCCCC
T ss_pred CcCCcccCCCEec-CeeE----EeCCCCCCCC-----cCEeCCCCCCCC
Confidence 6779999999997 3111 2224 35533 378999988774
No 21
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.60 E-value=8.3 Score=26.30 Aligned_cols=38 Identities=18% Similarity=0.432 Sum_probs=24.2
Q ss_pred eeeecCCCCccccccceeeeecccccc-ccceeeEEEEEEcCCCCceeE
Q psy10064 51 YNIWCEGCNNHIGMGVRYNAEKKKVGM-YYSTPVYQFRMKCHLCDSHFE 98 (257)
Q Consensus 51 f~i~C~~C~~~I~kG~rfNA~K~~vg~-Y~st~I~~F~~kC~~C~~~i~ 98 (257)
+...|..|+..|+ |.... ..|. |+.. -|+|..|...|.
T Consensus 4 ~~~~C~~C~~~I~-~~~~~----a~~~~~H~~-----CF~C~~C~~~L~ 42 (70)
T 2d8x_A 4 GSSGCHQCGEFII-GRVIK----AMNNSWHPE-----CFRCDLCQEVLA 42 (70)
T ss_dssp CSSBCSSSCCBCC-SCCEE----ETTEEECTT-----TSBCSSSCCBCS
T ss_pred CCCcCccCCCEec-ceEEE----ECccccccc-----CCEeCCCCCcCC
Confidence 3568999999998 53222 2242 4432 368888988765
No 22
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.97 E-value=8.2 Score=27.35 Aligned_cols=38 Identities=16% Similarity=0.347 Sum_probs=26.5
Q ss_pred eeeecCCCCccccccceeeeeccccc-cccceeeEEEEEEcCCCCceeE
Q psy10064 51 YNIWCEGCNNHIGMGVRYNAEKKKVG-MYYSTPVYQFRMKCHLCDSHFE 98 (257)
Q Consensus 51 f~i~C~~C~~~I~kG~rfNA~K~~vg-~Y~st~I~~F~~kC~~C~~~i~ 98 (257)
+.-.|..|+..|+ |....| .| .|+.. -|+|..|...|.
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a----~~~~~H~~-----CF~C~~C~~~L~ 52 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPLIF----KNDPYHPD-----HFNCANCGKELT 52 (79)
T ss_dssp CCCBCTTTCCBCC-SCCCCC----SSSCCCTT-----TSBCSSSCCBCC
T ss_pred CCCCCccCCCEec-ceEEEE----CcceeCCC-----CCEeCCCCCccC
Confidence 5678999999999 543332 34 35543 378999998875
No 23
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.76 E-value=7.4 Score=26.48 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=24.4
Q ss_pred eeeecCCCCccccccceeeeeccccc-cccceeeEEEEEEcCCCCcee
Q psy10064 51 YNIWCEGCNNHIGMGVRYNAEKKKVG-MYYSTPVYQFRMKCHLCDSHF 97 (257)
Q Consensus 51 f~i~C~~C~~~I~kG~rfNA~K~~vg-~Y~st~I~~F~~kC~~C~~~i 97 (257)
|...|..|+..|. +....| .| .|+.. -|+|..|...|
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a----~~~~~H~~-----CF~C~~C~~~L 41 (70)
T 2d8z_A 4 GSSGCVQCKKPIT-TGGVTY----REQPWHKE-----CFVCTACRKQL 41 (70)
T ss_dssp CCCBCSSSCCBCC-SSEEES----SSSEEETT-----TSBCSSSCCBC
T ss_pred CCCCCcccCCeec-cceEEE----CccccCCC-----CCccCCCCCcC
Confidence 6678999999997 322222 24 24432 36888998877
No 24
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=47.50 E-value=10 Score=26.27 Aligned_cols=39 Identities=23% Similarity=0.458 Sum_probs=24.6
Q ss_pred eeeecCCCCccccc-c---ceeeeeccccc-cccceeeEEEEEEcCCCCceeE
Q psy10064 51 YNIWCEGCNNHIGM-G---VRYNAEKKKVG-MYYSTPVYQFRMKCHLCDSHFE 98 (257)
Q Consensus 51 f~i~C~~C~~~I~k-G---~rfNA~K~~vg-~Y~st~I~~F~~kC~~C~~~i~ 98 (257)
|..+|.+|+..|+- | ....| .| .|+.. -|+|..|...|.
T Consensus 14 ~~~~C~~C~~~I~~~g~~~~~~~a----~~~~~H~~-----CF~C~~C~~~L~ 57 (77)
T 2egq_A 14 VAKKCAGCKNPITGFGKGSSVVAY----EGQSWHDY-----CFHCKKCSVNLA 57 (77)
T ss_dssp CCCCCSSSCCCCCCCSSCCCEEEE----TTEEEETT-----TCBCSSSCCBCT
T ss_pred hCccCcccCCcccCCCCCceeEEE----CcceeCcc-----cCEehhcCCCCC
Confidence 56789999999983 2 22222 23 23322 367888988774
No 25
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=47.27 E-value=7.3 Score=31.35 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=13.8
Q ss_pred eeEEEEeceeeeecCCCCcc
Q psy10064 42 IMIIRFELPYNIWCEGCNNH 61 (257)
Q Consensus 42 ~~~VRfe~Pf~i~C~~C~~~ 61 (257)
.|.|- +.|-..||..||..
T Consensus 61 ~L~i~-~~p~~~~C~~CG~~ 79 (139)
T 3a43_A 61 EIEFV-EEEAVFKCRNCNYE 79 (139)
T ss_dssp EEEEE-EECCEEEETTTCCE
T ss_pred EEEEE-ecCCcEECCCCCCE
Confidence 45553 56888999999753
No 26
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.16 E-value=10 Score=25.82 Aligned_cols=39 Identities=15% Similarity=0.362 Sum_probs=25.8
Q ss_pred eeeecCCCCcccccc-ceeeeeccccc-cccceeeEEEEEEcCCCCceeE
Q psy10064 51 YNIWCEGCNNHIGMG-VRYNAEKKKVG-MYYSTPVYQFRMKCHLCDSHFE 98 (257)
Q Consensus 51 f~i~C~~C~~~I~kG-~rfNA~K~~vg-~Y~st~I~~F~~kC~~C~~~i~ 98 (257)
|+..|..|+..|+-+ ....| .| .|+.. -|+|..|...|.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a----~~~~~H~~-----CF~C~~C~~~L~ 44 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEY----GGQTWHEH-----CFLCSGCEQPLG 44 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECS----TTCCEETT-----TCBCTTTCCBTT
T ss_pred cCCCCccCCCccccCccEEEE----CccccCcc-----cCeECCCCCcCC
Confidence 678999999999964 33332 23 24432 368888988763
No 27
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=46.07 E-value=7 Score=27.21 Aligned_cols=36 Identities=19% Similarity=0.513 Sum_probs=23.7
Q ss_pred ecCCCCccccccceeeeeccccc-cccceeeEEEEEEcCCCCceeE
Q psy10064 54 WCEGCNNHIGMGVRYNAEKKKVG-MYYSTPVYQFRMKCHLCDSHFE 98 (257)
Q Consensus 54 ~C~~C~~~I~kG~rfNA~K~~vg-~Y~st~I~~F~~kC~~C~~~i~ 98 (257)
.|..|+..|+-|....|. | .|+.. -|+|..|...|.
T Consensus 2 ~C~~C~~~I~~~~~v~a~----~~~~H~~-----CF~C~~C~~~L~ 38 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSL----GKDWHRP-----CLKCEKCGKTLT 38 (76)
T ss_dssp BCTTTSSBCCGGGEEEET----TEEEETT-----TCBCTTTCCBCC
T ss_pred cCCCCCCEEECceEEEEC----CccccCC-----CCCccccCccCC
Confidence 588999999877655443 4 23332 367888887664
No 28
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.89 E-value=5.9 Score=28.73 Aligned_cols=43 Identities=19% Similarity=0.413 Sum_probs=28.9
Q ss_pred EeceeeeecCCCCccccccceeeeecccccc-ccceeeEEEEEEcCCCCceeE
Q psy10064 47 FELPYNIWCEGCNNHIGMGVRYNAEKKKVGM-YYSTPVYQFRMKCHLCDSHFE 98 (257)
Q Consensus 47 fe~Pf~i~C~~C~~~I~kG~rfNA~K~~vg~-Y~st~I~~F~~kC~~C~~~i~ 98 (257)
|-+|+...|..|+..|+-+....| .|. |+.. -|+|..|...|.
T Consensus 10 ~~~~~~~~C~~C~~~I~~~~~v~a----~~~~~H~~-----CF~C~~C~~~L~ 53 (91)
T 2d8y_A 10 FQAPARETCVECQKTVYPMERLLA----NQQVFHIS-----CFRCSYCNNKLS 53 (91)
T ss_dssp SCSSSSCBCTTTCCBCCTTSEEEC----SSSEEETT-----TCBCTTTCCBCC
T ss_pred cCCCCCCcCccCCCccCCceeEEE----CCCEECCC-----CCeeCCCCCCCC
Confidence 456788999999999986644322 242 3332 378889988764
No 29
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=45.75 E-value=5.9 Score=33.78 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=17.9
Q ss_pred eeecCCCCccccccceeeeeccccccccceeeEEEEEEcCCCCce
Q psy10064 52 NIWCEGCNNHIGMGVRYNAEKKKVGMYYSTPVYQFRMKCHLCDSH 96 (257)
Q Consensus 52 ~i~C~~C~~~I~kG~rfNA~K~~vg~Y~st~I~~F~~kC~~C~~~ 96 (257)
--.|..|| ||+-| ++ | -+||.|+..
T Consensus 171 ~~~C~~CG-~i~~g---~~-----------p-----~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICG-YIHKG---ED-----------F-----EKCPICFRP 195 (202)
T ss_dssp EEECSSSC-CEEES---SC-----------C-----SBCTTTCCB
T ss_pred EEEECCCC-CEEcC---cC-----------C-----CCCCCCCCC
Confidence 35699999 66777 21 2 589999874
No 30
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.33 E-value=8 Score=27.59 Aligned_cols=38 Identities=24% Similarity=0.545 Sum_probs=27.1
Q ss_pred eeecCCCCccccccceeeeeccccc-cccceeeEEEEEEcCCCCceeE
Q psy10064 52 NIWCEGCNNHIGMGVRYNAEKKKVG-MYYSTPVYQFRMKCHLCDSHFE 98 (257)
Q Consensus 52 ~i~C~~C~~~I~kG~rfNA~K~~vg-~Y~st~I~~F~~kC~~C~~~i~ 98 (257)
...|..|+..|+-|...+| .| .|+.. -|+|..|...|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a----~~~~wH~~-----CF~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA----LDKQWHVS-----CFKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE----TTEEECTT-----TCBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEE----CCcccccc-----cCCcCcCCCCcC
Confidence 4689999999998765554 34 34433 478999988773
No 31
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.17 E-value=12 Score=26.98 Aligned_cols=38 Identities=24% Similarity=0.518 Sum_probs=26.1
Q ss_pred eeeecCCCCccccccceeeeeccccc-cccceeeEEEEEEcCCCCceeE
Q psy10064 51 YNIWCEGCNNHIGMGVRYNAEKKKVG-MYYSTPVYQFRMKCHLCDSHFE 98 (257)
Q Consensus 51 f~i~C~~C~~~I~kG~rfNA~K~~vg-~Y~st~I~~F~~kC~~C~~~i~ 98 (257)
+...|..|+..|. |....| .| .|+.. -|+|..|...|.
T Consensus 24 ~~~~C~~C~~~I~-~~~v~a----~~~~~H~~-----CF~C~~C~~~L~ 62 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLVA----LGKSWHPE-----EFNCAHCKNTMA 62 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEEE----TTEEECTT-----TCBCSSSCCBCS
T ss_pred CCCCCccCCCEec-ceEEEE----CCcccccc-----CCccCCCCCCCC
Confidence 5678999999995 544333 24 24433 478999998875
No 32
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=43.95 E-value=7.6 Score=28.34 Aligned_cols=15 Identities=20% Similarity=0.496 Sum_probs=12.1
Q ss_pred eeeeecCCCCccccc
Q psy10064 50 PYNIWCEGCNNHIGM 64 (257)
Q Consensus 50 Pf~i~C~~C~~~I~k 64 (257)
=|.|+|-+||..|+-
T Consensus 2 iiPVRCFTCGkvi~~ 16 (70)
T 1twf_J 2 IVPVRCFSCGKVVGD 16 (70)
T ss_dssp CCCSBCTTTCCBCTT
T ss_pred CCCeecCCCCCChHH
Confidence 367999999998864
No 33
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.94 E-value=8.4 Score=26.91 Aligned_cols=38 Identities=18% Similarity=0.430 Sum_probs=24.5
Q ss_pred eeeecCCCCccccccceeeeeccccc-cccceeeEEEEEEcCCCCceeE
Q psy10064 51 YNIWCEGCNNHIGMGVRYNAEKKKVG-MYYSTPVYQFRMKCHLCDSHFE 98 (257)
Q Consensus 51 f~i~C~~C~~~I~kG~rfNA~K~~vg-~Y~st~I~~F~~kC~~C~~~i~ 98 (257)
|+..|..|+..|+- ... ...| .|+.. -|+|..|...|.
T Consensus 14 ~~~~C~~C~~~I~~-~~v----~a~~~~~H~~-----CF~C~~C~~~L~ 52 (80)
T 1x3h_A 14 FSPKCGGCNRPVLE-NYL----SAMDTVWHPE-----CFVCGDCFTSFS 52 (80)
T ss_dssp CSCBCTTTCCBCCS-SCE----EETTEEECTT-----TCBCSSSCCBSC
T ss_pred cCCccccCCCeecc-eeE----EECCCeEecC-----cCChhhCCCCCC
Confidence 55789999999983 222 1224 34432 378999988774
No 34
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=43.62 E-value=9.2 Score=33.35 Aligned_cols=54 Identities=19% Similarity=0.366 Sum_probs=33.3
Q ss_pred HHHhhhcCCeeEEEEeceeeeecCCCCccccccceeeeeccccccccceeeEEEEEEcCCCCceeEEe
Q psy10064 33 ERARKLHMGIMIIRFELPYNIWCEGCNNHIGMGVRYNAEKKKVGMYYSTPVYQFRMKCHLCDSHFEIK 100 (257)
Q Consensus 33 ~Ra~k~~~g~~~VRfe~Pf~i~C~~C~~~I~kG~rfNA~K~~vg~Y~st~I~~F~~kC~~C~~~i~i~ 100 (257)
.|.++...|.-+|.+. .-.|.+|.-.|.-+ .||.-+. +. .| +.|++|+.-++..
T Consensus 182 erir~~~~g~avv~v~---~~~C~GC~~~lppq-~~~~i~~--~~----~I----v~Cp~CgRIL~~~ 235 (256)
T 3na7_A 182 ERIRRWAKNTSIVTIK---KQACGGCFIRLNDK-IYTEVLT--SG----DM----ITCPYCGRILYAE 235 (256)
T ss_dssp HHHHHHHGGGSEEECB---TTBCTTTCCBCCHH-HHHHHHH--SS----SC----EECTTTCCEEECS
T ss_pred HHHHHhCCCceEEEee---CCccCCCCeeeCHH-HHHHHHC--CC----CE----EECCCCCeeEEeC
Confidence 3444333465566653 67999999988764 2343332 11 11 7899999977743
No 35
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=43.49 E-value=15 Score=31.63 Aligned_cols=40 Identities=20% Similarity=0.512 Sum_probs=23.9
Q ss_pred ceeeeecCCCCc-cccccceeeeeccccccccceeeEEEEEEcCCCCcee
Q psy10064 49 LPYNIWCEGCNN-HIGMGVRYNAEKKKVGMYYSTPVYQFRMKCHLCDSHF 97 (257)
Q Consensus 49 ~Pf~i~C~~C~~-~I~kG~rfNA~K~~vg~Y~st~I~~F~~kC~~C~~~i 97 (257)
-||.+.|.+|+. +++.|+- + .+.+ .+..=-+.|+.|...+
T Consensus 19 ~~l~l~Cp~C~~~~~F~gv~--~----~~~~---~~~~sg~~C~~C~~~~ 59 (206)
T 3flo_B 19 VTLELSCPSCDKRFPFGGIV--S----SNYY---RVSYNGLQCKHCEQLF 59 (206)
T ss_dssp CCEEEECTTTCCEEEECSSS--C----CSSE---EEETTEEEETTTCCBC
T ss_pred ceeEEECCCCCCccCCCCcc--c----CCCc---ccccccccCCCCCCcC
Confidence 489999999985 6666653 1 1111 0111247888888754
No 36
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=43.38 E-value=8.2 Score=26.65 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=18.4
Q ss_pred EEcCCCCceeEEeeCCCCCCeeecc
Q psy10064 88 MKCHLCDSHFEIKTDPGNLDYVIVS 112 (257)
Q Consensus 88 ~kC~~C~~~i~i~TDPkn~dYv~~~ 112 (257)
++|+.|.+.= |.+|+..+++||..
T Consensus 12 ~~Cp~C~~~~-lv~D~~~ge~vC~~ 35 (58)
T 1dl6_A 12 VTCPNHPDAI-LVEDYRAGDMICPE 35 (58)
T ss_dssp CSBTTBSSSC-CEECSSSCCEECTT
T ss_pred ccCcCCCCCc-eeEeCCCCeEEeCC
Confidence 4799998732 56699988888876
No 37
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=42.46 E-value=12 Score=27.17 Aligned_cols=38 Identities=18% Similarity=0.398 Sum_probs=20.6
Q ss_pred eeeecCCCCccccc-cceeeeeccccc-cccceeeEEEEEEcCCCCcee
Q psy10064 51 YNIWCEGCNNHIGM-GVRYNAEKKKVG-MYYSTPVYQFRMKCHLCDSHF 97 (257)
Q Consensus 51 f~i~C~~C~~~I~k-G~rfNA~K~~vg-~Y~st~I~~F~~kC~~C~~~i 97 (257)
|...|..|+..|+. |...+|. | .|+.. -|+|..|...|
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~----~~~~H~~-----CF~C~~C~~~L 43 (101)
T 2cup_A 4 GSSGCVECRKPIGADSKEVHYK----NRFWHDT-----CFRCAKCLHPL 43 (101)
T ss_dssp CCCBCSSSCCBCCSSSCEEEET----TEEEETT-----TCCCSSSCCCT
T ss_pred CCCcCcccCCcccCCceEEEEC----ccChhhc-----CCcccccCCCC
Confidence 45677888877764 4443331 3 23322 25566666655
No 38
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.45 E-value=9.8 Score=26.05 Aligned_cols=39 Identities=21% Similarity=0.385 Sum_probs=25.1
Q ss_pred eeeecCCCCccccc--c-ceeeeeccccc-cccceeeEEEEEEcCCCCceeE
Q psy10064 51 YNIWCEGCNNHIGM--G-VRYNAEKKKVG-MYYSTPVYQFRMKCHLCDSHFE 98 (257)
Q Consensus 51 f~i~C~~C~~~I~k--G-~rfNA~K~~vg-~Y~st~I~~F~~kC~~C~~~i~ 98 (257)
|...|.+|+..|+- + ....| .| .|+.. -|+|..|...|.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~~a----~~~~wH~~-----CF~C~~C~~~L~ 46 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYISF----EERQWHND-----CFNCKKCSLSLV 46 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCEEC----SSCEECTT-----TCBCSSSCCBCT
T ss_pred CCCCCcCCCccccCCCCcceEEE----CCcccCcc-----cCEeccCCCcCC
Confidence 56789999999984 1 21111 24 34433 378999998774
No 39
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.83 E-value=9.1 Score=26.45 Aligned_cols=40 Identities=23% Similarity=0.471 Sum_probs=25.8
Q ss_pred eeeeecCCCCccccccce-eeeeccccc-cccceeeEEEEEEcCCCCceeE
Q psy10064 50 PYNIWCEGCNNHIGMGVR-YNAEKKKVG-MYYSTPVYQFRMKCHLCDSHFE 98 (257)
Q Consensus 50 Pf~i~C~~C~~~I~kG~r-fNA~K~~vg-~Y~st~I~~F~~kC~~C~~~i~ 98 (257)
++...|.+|+..|+-+.+ ..| .| .|+.. -|+|..|...|.
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a----~~~~~H~~-----CF~C~~C~~~L~ 50 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNS----NGELYHEQ-----CFVCAQCFQQFP 50 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEE----TTEEECTT-----TCCCTTTCCCCG
T ss_pred CCCCCchhcCCccCCCceEEEe----CccEeccc-----cCeECCCCCCCC
Confidence 678899999999985322 222 23 24432 367888887663
No 40
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.73 E-value=11 Score=26.56 Aligned_cols=38 Identities=21% Similarity=0.418 Sum_probs=25.4
Q ss_pred eeeecCCCCccccccceeeeeccccc-cccceeeEEEEEEcCCCCceeE
Q psy10064 51 YNIWCEGCNNHIGMGVRYNAEKKKVG-MYYSTPVYQFRMKCHLCDSHFE 98 (257)
Q Consensus 51 f~i~C~~C~~~I~kG~rfNA~K~~vg-~Y~st~I~~F~~kC~~C~~~i~ 98 (257)
|...|..|+..|+ |....| .| .|+.. -|+|..|...|.
T Consensus 14 ~~~~C~~C~~~I~-~~~~~a----~~~~~H~~-----CF~C~~C~~~L~ 52 (81)
T 2dlo_A 14 TLEKCATCSQPIL-DRILRA----MGKAYHPG-----CFTCVVCHRGLD 52 (81)
T ss_dssp SCCBCTTTCCBCC-SCCEEE----TTEEECTT-----TCBCSSSCCBCT
T ss_pred CCCccccCCCeec-ceeEEE----CCccccHH-----hcCcccCCCccC
Confidence 6678999999998 533332 24 24432 378999988774
No 41
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.27 E-value=14 Score=26.27 Aligned_cols=38 Identities=21% Similarity=0.503 Sum_probs=26.1
Q ss_pred eeecCCCCccccccceeeeecccccc-ccceeeEEEEEEcCCCCceeE
Q psy10064 52 NIWCEGCNNHIGMGVRYNAEKKKVGM-YYSTPVYQFRMKCHLCDSHFE 98 (257)
Q Consensus 52 ~i~C~~C~~~I~kG~rfNA~K~~vg~-Y~st~I~~F~~kC~~C~~~i~ 98 (257)
...|..|+..|+.+.+..| .|. |+.. -|+|..|...|.
T Consensus 15 ~~~C~~C~~~I~~~e~v~a----~~~~wH~~-----CF~C~~C~~~L~ 53 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLCV----NGHFFHRS-----CFRCHTCEATLW 53 (82)
T ss_dssp SCBCSSSCCBCCTTTBCCB----TTBCCBTT-----TCBCSSSCCBCC
T ss_pred CCCCcccCCCcccceEEEE----CCCeeCCC-----cCEEcCCCCCcC
Confidence 3579999999997655433 243 4433 378999988764
No 42
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=38.51 E-value=14 Score=33.00 Aligned_cols=51 Identities=29% Similarity=0.705 Sum_probs=35.9
Q ss_pred eeecCCCCc-cccccceeeeeccccccccceeeEEEEEEcCCCCceeEEeeCCCCCCeeeccCcee
Q psy10064 52 NIWCEGCNN-HIGMGVRYNAEKKKVGMYYSTPVYQFRMKCHLCDSHFEIKTDPGNLDYVIVSGARR 116 (257)
Q Consensus 52 ~i~C~~C~~-~I~kG~rfNA~K~~vg~Y~st~I~~F~~kC~~C~~~i~i~TDPkn~dYv~~~Ga~r 116 (257)
++-|..||. .|.+ |=+ ..|+=- |.|+.|..+++++.--++-.=.|.-||-.
T Consensus 34 n~yCPnCG~~~l~~---f~n---------N~PVaD--F~C~~C~EeyELKSk~~~~~~~I~dGAY~ 85 (257)
T 4esj_A 34 QSYCPNCGNNPLNH---FEN---------NRPVAD--FYCNHCSEEFELKSKKGNFSSTINDGAYA 85 (257)
T ss_dssp HCCCTTTCCSSCEE---C-------------CCCE--EECTTTCCEEEEEEEESSCCSEEEEEEHH
T ss_pred CCcCCCCCChhhhh---ccC---------CCcccc--cccCCcchhheeccccCccCccccCchHH
Confidence 578999998 4532 111 123333 45999999999999988888888888843
No 43
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=38.13 E-value=11 Score=25.55 Aligned_cols=12 Identities=25% Similarity=0.913 Sum_probs=9.8
Q ss_pred eeeecCCCCccc
Q psy10064 51 YNIWCEGCNNHI 62 (257)
Q Consensus 51 f~i~C~~C~~~I 62 (257)
|.+.|+.|+..|
T Consensus 5 ~~~~Cd~C~~~i 16 (52)
T 1tot_A 5 FVYTCNECKHHV 16 (52)
T ss_dssp SCEEETTTTEEE
T ss_pred CEEECCCCCCCC
Confidence 668899998775
No 44
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=37.12 E-value=18 Score=25.76 Aligned_cols=12 Identities=25% Similarity=0.830 Sum_probs=10.3
Q ss_pred eeecCCCCcccc
Q psy10064 52 NIWCEGCNNHIG 63 (257)
Q Consensus 52 ~i~C~~C~~~I~ 63 (257)
..||..|+..|+
T Consensus 35 pt~C~~C~~~l~ 46 (72)
T 2fnf_X 35 PGWCDLCGREVL 46 (72)
T ss_dssp CCBCTTTSSBCS
T ss_pred CcchhhhhHHHH
Confidence 389999999983
No 45
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=37.03 E-value=32 Score=26.94 Aligned_cols=44 Identities=20% Similarity=0.384 Sum_probs=30.3
Q ss_pred eecCCCCccccccceeeeeccccc-cccceeeEEEEEEcCCCCceeEEeeCC
Q psy10064 53 IWCEGCNNHIGMGVRYNAEKKKVG-MYYSTPVYQFRMKCHLCDSHFEIKTDP 103 (257)
Q Consensus 53 i~C~~C~~~I~kG~rfNA~K~~vg-~Y~st~I~~F~~kC~~C~~~i~i~TDP 103 (257)
..|..|+.++--|+ |+..+..+ .+ + ...+.|..|+..-.|..++
T Consensus 66 ~~Ck~C~s~LiPG~--t~~vri~~~~~---~--~vv~tCl~Cg~~kR~p~~~ 110 (120)
T 1x0t_A 66 RYCKRCHTFLIPGV--NARVRLRTKRM---P--HVVITCLECGYIMRYPYLR 110 (120)
T ss_dssp SBCTTTCCBCCBTT--TEEEEEECSSS---C--EEEEEETTTCCEEEEECC-
T ss_pred HhccCCCCEeECCC--ceEEEEecCCc---c--EEEEECCCCCCEEEEccCc
Confidence 47999999887785 56544332 22 2 3678999999987777654
No 46
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.84 E-value=18 Score=25.16 Aligned_cols=38 Identities=13% Similarity=0.391 Sum_probs=24.8
Q ss_pred eeeeecCCCCccccccceeeeeccccc-cccceeeEEEEEEcCCCCcee
Q psy10064 50 PYNIWCEGCNNHIGMGVRYNAEKKKVG-MYYSTPVYQFRMKCHLCDSHF 97 (257)
Q Consensus 50 Pf~i~C~~C~~~I~kG~rfNA~K~~vg-~Y~st~I~~F~~kC~~C~~~i 97 (257)
-|+..|..|+..|.-. .. ...| .|+.. -|+|..|...|
T Consensus 13 ~~~~~C~~C~~~I~~~-~v----~a~~~~~H~~-----CF~C~~C~~~L 51 (80)
T 2cuq_A 13 KFAPRCARCSKTLTQG-GV----TYRDQPWHRE-----CLVCTGCQTPL 51 (80)
T ss_dssp CSSCCCTTTCCCCCSC-CE----ESSSSEECTT-----TCBCSSSCCBC
T ss_pred ccCCcCCCCCCEecCc-EE----EECCchhhhh-----hCCcccCCCcC
Confidence 3567899999999742 11 2224 34432 36899999887
No 47
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=36.76 E-value=19 Score=23.41 Aligned_cols=14 Identities=21% Similarity=0.600 Sum_probs=11.9
Q ss_pred eeecCCCCcccccc
Q psy10064 52 NIWCEGCNNHIGMG 65 (257)
Q Consensus 52 ~i~C~~C~~~I~kG 65 (257)
..+|..|+..|.+|
T Consensus 14 pt~C~~C~~~l~qG 27 (52)
T 1faq_A 14 LAFCDICQKFLLNG 27 (52)
T ss_dssp CEECTTSSSEECSE
T ss_pred CcCCCCcccccccC
Confidence 48999999998866
No 48
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=36.67 E-value=31 Score=27.23 Aligned_cols=45 Identities=20% Similarity=0.382 Sum_probs=31.2
Q ss_pred eecCCCCccccccceeeeeccccc-cccceeeEEEEEEcCCCCceeEEeeCCC
Q psy10064 53 IWCEGCNNHIGMGVRYNAEKKKVG-MYYSTPVYQFRMKCHLCDSHFEIKTDPG 104 (257)
Q Consensus 53 i~C~~C~~~I~kG~rfNA~K~~vg-~Y~st~I~~F~~kC~~C~~~i~i~TDPk 104 (257)
..|..|+.++--| .|+..+..+ .. + ...++|..|+..-.|..+++
T Consensus 61 ~~Ck~C~s~LIPG--~t~~vri~~~~k---~--~vv~tCl~Cg~~kR~p~~~~ 106 (123)
T 2k3r_A 61 RYCKKCHAFLVPG--INARVRLRQKRM---P--HIVVKCLECGHIMRYPYIKE 106 (123)
T ss_dssp SBCTTTCCBCCBT--TTEEEEEECSSS---C--EEEEEETTTTEEEEEECCC-
T ss_pred HhccCCCCEeECC--CceEEEEecCCc---c--EEEEECCCCCCEEEEecCcc
Confidence 4799999988778 455544332 11 1 25689999999888887764
No 49
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=35.95 E-value=16 Score=28.00 Aligned_cols=38 Identities=24% Similarity=0.563 Sum_probs=24.8
Q ss_pred eee--ecCCCCcccccccee-eeeccccc-cccceeeEEEEEEcCCCCcee
Q psy10064 51 YNI--WCEGCNNHIGMGVRY-NAEKKKVG-MYYSTPVYQFRMKCHLCDSHF 97 (257)
Q Consensus 51 f~i--~C~~C~~~I~kG~rf-NA~K~~vg-~Y~st~I~~F~~kC~~C~~~i 97 (257)
|.. .|..|+..|+-+.+. .| .| .|+.. -|+|..|...|
T Consensus 5 fg~~~~C~~C~~~I~~~e~~~~a----~~~~~H~~-----CF~C~~C~~~L 46 (123)
T 2l3k_A 5 FGQDGLCASCDKRIRAYEMTMRV----KDKVYHLE-----CFKCAACQKHF 46 (123)
T ss_dssp SSSSCCCSSSSCCCCTTCCCCCC----SSCCCCTT-----TCBCTTTCCBC
T ss_pred hCCCCcccCCCCeecCCceEEEE----CCcccccc-----cCccccCCCCC
Confidence 566 899999999864322 22 23 34433 36889998877
No 50
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=33.71 E-value=12 Score=26.82 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=26.7
Q ss_pred eceeeeecCCCCccccccceeeeecccccc-ccceeeEEEEEEcCCCCceeE
Q psy10064 48 ELPYNIWCEGCNNHIGMGVRYNAEKKKVGM-YYSTPVYQFRMKCHLCDSHFE 98 (257)
Q Consensus 48 e~Pf~i~C~~C~~~I~kG~rfNA~K~~vg~-Y~st~I~~F~~kC~~C~~~i~ 98 (257)
.++..-.|..|+..|+ |....| .|. |+.. -|+|..|...|.
T Consensus 21 ~~~~~~~C~~C~~~I~-~~~~~a----~~~~~H~~-----CF~C~~C~~~L~ 62 (89)
T 1x64_A 21 SAQRMPLCDKCGSGIV-GAVVKA----RDKYRHPE-----CFVCADCNLNLK 62 (89)
T ss_dssp CCCSCCBCTTTCCBCC-SCCEES----SSCEECTT-----TCCCSSSCCCTT
T ss_pred CCCcCCCcccCCCEec-ccEEEE----CCceECcc-----CCEecCCCCCCC
Confidence 4566789999999998 422222 343 4432 368888988773
No 51
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=32.15 E-value=25 Score=23.89 Aligned_cols=12 Identities=25% Similarity=0.841 Sum_probs=10.2
Q ss_pred eeeecCCCCccc
Q psy10064 51 YNIWCEGCNNHI 62 (257)
Q Consensus 51 f~i~C~~C~~~I 62 (257)
-..||..|+..|
T Consensus 21 ~pt~C~~C~~~i 32 (59)
T 1rfh_A 21 GPGWCDLCGREV 32 (59)
T ss_dssp CCEECTTTCSEE
T ss_pred CCeEchhcchhh
Confidence 348999999988
No 52
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=31.14 E-value=17 Score=30.09 Aligned_cols=35 Identities=20% Similarity=0.445 Sum_probs=20.1
Q ss_pred hcCCeeEEEEeceeeeecCCCCccccccceeeeeccccccccceeeEEEEEEcCCCCc
Q psy10064 38 LHMGIMIIRFELPYNIWCEGCNNHIGMGVRYNAEKKKVGMYYSTPVYQFRMKCHLCDS 95 (257)
Q Consensus 38 ~~~g~~~VRfe~Pf~i~C~~C~~~I~kG~rfNA~K~~vg~Y~st~I~~F~~kC~~C~~ 95 (257)
+..|.. |..+---.|..||. |+-| ..|- +||.|+.
T Consensus 127 l~~~~~---~~~~~~~~C~~CG~-i~~~--------------~~p~-----~CP~Cg~ 161 (170)
T 3pwf_A 127 AEKGED---IEIKKVYICPICGY-TAVD--------------EAPE-----YCPVCGA 161 (170)
T ss_dssp HTTTCC---CCCSCEEECTTTCC-EEES--------------CCCS-----BCTTTCC
T ss_pred HhcCCc---CCCCCeeEeCCCCC-eeCC--------------CCCC-----CCCCCCC
Confidence 445543 33343344999985 3333 3443 8999986
No 53
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=30.91 E-value=52 Score=29.97 Aligned_cols=50 Identities=22% Similarity=0.379 Sum_probs=34.0
Q ss_pred ccccccceeeeeccc---cccccceeeEEEEEEcCCCCceeEEeeCCCCCCeeeccCc
Q psy10064 60 NHIGMGVRYNAEKKK---VGMYYSTPVYQFRMKCHLCDSHFEIKTDPGNLDYVIVSGA 114 (257)
Q Consensus 60 ~~I~kG~rfNA~K~~---vg~Y~st~I~~F~~kC~~C~~~i~i~TDPkn~dYv~~~Ga 114 (257)
+.+.-|+=|+.++.+ .|+ ++|+.++- |..++|++|.||+++.-||-+..-
T Consensus 2 ~~~SPGv~f~~~~~~ths~g~----~~y~~~iI-P~RGsWlefe~d~~d~~~vrIdr~ 54 (296)
T 3lti_A 2 HPMSPGVFFDSDKGKTHSSGK----VLYNARII-PYRGSWLDFEFDPKDNLFVRIDRR 54 (296)
T ss_dssp --CCCEEEEEEC-------------CCEEEEEE-CSBSCCEEEEECTTSCEEEEETTC
T ss_pred CCCCCEEEEecccCCcCCCCc----EEEEEEEe-cCCCceEEEEEcCCCeEEEEEcCc
Confidence 456679999988754 243 45665554 678999999999999999888753
No 54
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=30.00 E-value=29 Score=24.76 Aligned_cols=13 Identities=38% Similarity=0.787 Sum_probs=8.8
Q ss_pred eeeecCCCCcccc
Q psy10064 51 YNIWCEGCNNHIG 63 (257)
Q Consensus 51 f~i~C~~C~~~I~ 63 (257)
+..+|..|+..++
T Consensus 14 ~~~rC~~C~kkvg 26 (64)
T 1wg2_A 14 PNNRCFSCNKKVG 26 (64)
T ss_dssp CSCSCTTTCCCCT
T ss_pred cCCcChhhCCccc
Confidence 3468999976544
No 55
>2l9z_A PR domain zinc finger protein 4; zinc-binding domain, transcription; NMR {Homo sapiens}
Probab=29.09 E-value=12 Score=24.33 Aligned_cols=12 Identities=33% Similarity=1.157 Sum_probs=10.2
Q ss_pred eeeeecCCCCcc
Q psy10064 50 PYNIWCEGCNNH 61 (257)
Q Consensus 50 Pf~i~C~~C~~~ 61 (257)
-+.+||.-|+++
T Consensus 9 ~~yl~CE~C~~~ 20 (39)
T 2l9z_A 9 LFTIWCTLCDRA 20 (39)
T ss_dssp SCSEEEGGGTEE
T ss_pred hhhhHHHHHhhh
Confidence 378999999985
No 56
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=29.03 E-value=14 Score=25.73 Aligned_cols=13 Identities=15% Similarity=0.619 Sum_probs=9.6
Q ss_pred eeeecCCCCcccc
Q psy10064 51 YNIWCEGCNNHIG 63 (257)
Q Consensus 51 f~i~C~~C~~~I~ 63 (257)
+.|+|-+||..|+
T Consensus 2 iPVRCFTCGkvi~ 14 (55)
T 1ef4_A 2 IPVRCLSCGKPVS 14 (55)
T ss_dssp CSSSCSCTTSCCH
T ss_pred CCeecCCCCCChh
Confidence 3578888888764
No 57
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=28.87 E-value=12 Score=27.04 Aligned_cols=38 Identities=13% Similarity=0.482 Sum_probs=25.8
Q ss_pred ceeeeecCCCCccccccceeeeeccccccccceeeEEEEEEcCCCCceeEEeeCCC
Q psy10064 49 LPYNIWCEGCNNHIGMGVRYNAEKKKVGMYYSTPVYQFRMKCHLCDSHFEIKTDPG 104 (257)
Q Consensus 49 ~Pf~i~C~~C~~~I~kG~rfNA~K~~vg~Y~st~I~~F~~kC~~C~~~i~i~TDPk 104 (257)
.|+.-.|..||.-+-. . . +- -++|+.|+..|-++.-|+
T Consensus 25 ~~v~Y~C~~CG~~~e~------~---~----~d-----~irCp~CG~RILyK~R~~ 62 (70)
T 1twf_L 25 ATLKYICAECSSKLSL------S---R----TD-----AVRCKDCGHRILLKARTK 62 (70)
T ss_dssp CCCCEECSSSCCEECC------C---T----TS-----TTCCSSSCCCCCBCCCCS
T ss_pred ceEEEECCCCCCccee------C---C----CC-----CccCCCCCceEeEecCCC
Confidence 4677789999875221 0 0 11 268999999888887765
No 58
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=28.44 E-value=15 Score=33.36 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=19.9
Q ss_pred EEEcCCCCcee-EEeeCCCCCCeeecc
Q psy10064 87 RMKCHLCDSHF-EIKTDPGNLDYVIVS 112 (257)
Q Consensus 87 ~~kC~~C~~~i-~i~TDPkn~dYv~~~ 112 (257)
.++|+.|+..= .|.+|+.++++||..
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~~ 47 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCAL 47 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCSS
T ss_pred CCcCcCCCCCCCceEEECCCCCEecCC
Confidence 46799998752 466789988888876
No 59
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=28.34 E-value=14 Score=31.81 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=21.9
Q ss_pred EEEcCCCCce-eEEeeCCCCCCeeecc
Q psy10064 87 RMKCHLCDSH-FEIKTDPGNLDYVIVS 112 (257)
Q Consensus 87 ~~kC~~C~~~-i~i~TDPkn~dYv~~~ 112 (257)
..+|+.|++. -.|-+|+..+++||.+
T Consensus 21 ~~~CPECGs~~t~IV~D~erGE~VCsd 47 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVERFSEGDVVCAL 47 (197)
T ss_dssp CCCCTTTCCSSCCEEEEGGGTEEEETT
T ss_pred CeECcCCCCcCCeEEEeCCCCEEEEcC
Confidence 3589999984 4688999999999988
No 60
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=27.66 E-value=13 Score=34.14 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=20.6
Q ss_pred EEEEEcCCCCc-eeEEeeCCCCCCeeecc
Q psy10064 85 QFRMKCHLCDS-HFEIKTDPGNLDYVIVS 112 (257)
Q Consensus 85 ~F~~kC~~C~~-~i~i~TDPkn~dYv~~~ 112 (257)
.....|+.|++ .-.|-+|+.++++||.+
T Consensus 19 ~~~~~Cp~C~~~~~~lv~D~~~G~~vC~~ 47 (345)
T 4bbr_M 19 NIVLTCPECKVYPPKIVERFSEGDVVCAL 47 (345)
T ss_dssp ---CCCSSCCCSSCCEEEEGGGTEEEETT
T ss_pred ccCCcCCCCCCCCCceeEECCCCcEEeCC
Confidence 34568999987 55677889988888887
No 61
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=27.30 E-value=26 Score=27.42 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=11.9
Q ss_pred ecCCCCccccccc
Q psy10064 54 WCEGCNNHIGMGV 66 (257)
Q Consensus 54 ~C~~C~~~I~kG~ 66 (257)
.|.+|+..|.||.
T Consensus 22 ~Ck~Ck~kI~Kge 34 (114)
T 1v9x_A 22 SCKTCKSVINKEN 34 (114)
T ss_dssp BCSSSCCBCCSSS
T ss_pred CchhhCCccCCCC
Confidence 8999999999984
No 62
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=27.06 E-value=26 Score=28.23 Aligned_cols=31 Identities=23% Similarity=0.486 Sum_probs=17.8
Q ss_pred hhhHHHHhhhcCCeeE------EEEeceeeeecCCCCcc
Q psy10064 29 HALRERARKLHMGIMI------IRFELPYNIWCEGCNNH 61 (257)
Q Consensus 29 h~l~~Ra~k~~~g~~~------VRfe~Pf~i~C~~C~~~ 61 (257)
..+++.|+.+ |+-+ ||=..-|.-+|.+||+.
T Consensus 105 ~~l~~vA~~~--Gv~v~~~~~~i~~~~~~~y~C~~Cg~~ 141 (165)
T 2lcq_A 105 YNVQNIASLL--GLRFRTLKRGIKKVIKWRYVCIGCGRK 141 (165)
T ss_dssp HHHHHHHHHT--TCCEECCSCCCSSCCCCCEEESSSCCE
T ss_pred HHHHHHHHHC--CCeEEchhhhccccccEEEECCCCCCc
Confidence 3566667654 3222 22234567889999753
No 63
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.83 E-value=16 Score=25.55 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=25.1
Q ss_pred eeeeecCCCCccccccceeeeecccccc-ccceeeEEEEEEcCCCCceeE
Q psy10064 50 PYNIWCEGCNNHIGMGVRYNAEKKKVGM-YYSTPVYQFRMKCHLCDSHFE 98 (257)
Q Consensus 50 Pf~i~C~~C~~~I~kG~rfNA~K~~vg~-Y~st~I~~F~~kC~~C~~~i~ 98 (257)
+...+|..|+..|+ |....| .+. |+.. -|+|..|...|.
T Consensus 13 ~~~~~C~~C~~~I~-~~~~~a----~~~~~H~~-----CF~C~~C~~~L~ 52 (79)
T 1x62_A 13 QKLPMCDKCGTGIV-GVFVKL----RDRHRHPE-----CYVCTDCGTNLK 52 (79)
T ss_dssp CCCCCCSSSCCCCC-SSCEEC----SSCEECTT-----TTSCSSSCCCHH
T ss_pred CCCCccccCCCCcc-CcEEEE----CcceeCcC-----cCeeCCCCCCCC
Confidence 44678999999998 432222 242 4432 367888988874
No 64
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=24.51 E-value=40 Score=22.99 Aligned_cols=27 Identities=19% Similarity=0.527 Sum_probs=18.2
Q ss_pred eecCCCCccccccceeeeeccccccccceeeEEEEEEcCCCCce
Q psy10064 53 IWCEGCNNHIGMGVRYNAEKKKVGMYYSTPVYQFRMKCHLCDSH 96 (257)
Q Consensus 53 i~C~~C~~~I~kG~rfNA~K~~vg~Y~st~I~~F~~kC~~C~~~ 96 (257)
-.|..||..+.....|+ ++.|..|.-.
T Consensus 19 ~fCPkCG~~~~ma~~~d-----------------r~~C~kCgyt 45 (55)
T 2k4x_A 19 RFCPRCGPGVFLAEHAD-----------------RYSCGRCGYT 45 (55)
T ss_dssp CCCTTTTTTCCCEECSS-----------------EEECTTTCCC
T ss_pred ccCcCCCCceeEeccCC-----------------EEECCCCCCE
Confidence 46888998665543333 6789988665
No 65
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.36 E-value=35 Score=25.61 Aligned_cols=9 Identities=56% Similarity=1.553 Sum_probs=4.2
Q ss_pred cCCCCcccc
Q psy10064 55 CEGCNNHIG 63 (257)
Q Consensus 55 C~~C~~~I~ 63 (257)
|..|+..|+
T Consensus 6 C~~C~~~I~ 14 (114)
T 1j2o_A 6 CGGCQQNIG 14 (114)
T ss_dssp BSSSCSCBC
T ss_pred CcCCCCeeC
Confidence 444444444
No 66
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=23.76 E-value=81 Score=25.00 Aligned_cols=44 Identities=25% Similarity=0.502 Sum_probs=28.3
Q ss_pred CCcccCCCCCCCCCCCccccCchhhHHHHhhhcCC-eeEEEEece-------eeeecCCCCcccccc
Q psy10064 7 TNKYYPPDYDPSVGGLNKFLGTHALRERARKLHMG-IMIIRFELP-------YNIWCEGCNNHIGMG 65 (257)
Q Consensus 7 ~nkYyPPD~DP~k~~~nk~~~~h~l~~Ra~k~~~g-~~~VRfe~P-------f~i~C~~C~~~I~kG 65 (257)
.+-|.||+ ||..+.--++ +..| ...|-|-.| |...|+ +.++-+|
T Consensus 69 ~~~y~~~~-d~~via~t~~------------l~pGes~~vtf~~~~l~~~G~y~f~C~--gH~~M~G 120 (125)
T 3fsa_A 69 DKDYLKPD-DSRVIAHTKL------------IGSGEKDSVTFDVSKLKEGEQYMFFCA--AHAAMKG 120 (125)
T ss_dssp GGTTSCTT-CTTCCEECCC------------BCTTCEEEEEEEGGGC---CCEEEECS--SSTTCEE
T ss_pred hhccCCCC-Cccceeccce------------eCCCcEEEEEEeCcCcCCCccEEEEcC--CCCCcEE
Confidence 46788988 8765421111 1223 467888888 999999 7765445
No 67
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=23.72 E-value=51 Score=26.19 Aligned_cols=37 Identities=19% Similarity=0.558 Sum_probs=23.1
Q ss_pred eeeeecCCCCccccccceeeeeccccccccceeeEEEEEEcCCCCceeEEe
Q psy10064 50 PYNIWCEGCNNHIGMGVRYNAEKKKVGMYYSTPVYQFRMKCHLCDSHFEIK 100 (257)
Q Consensus 50 Pf~i~C~~C~~~I~kG~rfNA~K~~vg~Y~st~I~~F~~kC~~C~~~i~i~ 100 (257)
.|..+|- ||. .|--..+.+.. + -.+.|..|+-+|.+.
T Consensus 110 ~f~~~Cr-CG~------~f~i~~~~l~~--~-----~~v~C~sCSl~~~v~ 146 (155)
T 2l6l_A 110 SFYLSCR-CGG------KYSVSKDEAEE--V-----SLISCDTCSLIIELL 146 (155)
T ss_dssp EEEEECS-SSC------EEEEETTHHHH--C-----CEEECSSSSCEEEEE
T ss_pred EEEEcCC-CCC------eEEecHHHhCC--C-----CEEECCCCceEEEEE
Confidence 4778886 873 24433333321 1 258999999988764
No 68
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=23.57 E-value=29 Score=28.43 Aligned_cols=37 Identities=14% Similarity=0.442 Sum_probs=25.0
Q ss_pred eecCCCCccccccceeeeeccccc-cccceeeEEEEEEcCCCCceeE
Q psy10064 53 IWCEGCNNHIGMGVRYNAEKKKVG-MYYSTPVYQFRMKCHLCDSHFE 98 (257)
Q Consensus 53 i~C~~C~~~I~kG~rfNA~K~~vg-~Y~st~I~~F~~kC~~C~~~i~ 98 (257)
-.|..|+..|+.|....| .| .|+.. -|+|..|...|.
T Consensus 8 ~~C~~C~~~I~~~~~v~a----~g~~wH~~-----CF~C~~C~~~L~ 45 (192)
T 1b8t_A 8 KKCGVCQKAVYFAEEVQC----EGSSFHKS-----CFLCMVCKKNLD 45 (192)
T ss_dssp EECTTTCCEECSSCCEEE----TTEEECTT-----TCBCTTTCCBCC
T ss_pred CcCccCCCeecceeEEEe----CCceecCC-----CCcCcccCCcCC
Confidence 579999999987765543 24 24433 377888877664
No 69
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.76 E-value=36 Score=23.69 Aligned_cols=38 Identities=29% Similarity=0.650 Sum_probs=24.5
Q ss_pred eeeecCCCCccccccceeeeecccccc-ccceeeEEEEEEcCCCCceeE
Q psy10064 51 YNIWCEGCNNHIGMGVRYNAEKKKVGM-YYSTPVYQFRMKCHLCDSHFE 98 (257)
Q Consensus 51 f~i~C~~C~~~I~kG~rfNA~K~~vg~-Y~st~I~~F~~kC~~C~~~i~ 98 (257)
|+..|..|+..|+ |....| .|. |+.. -|+|..|...|.
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a----~~~~wH~~-----CF~C~~C~~~L~ 52 (81)
T 1v6g_A 14 YGTRCFSCDQFIE-GEVVSA----LGKTYHPD-----CFVCAVCRLPFP 52 (81)
T ss_dssp CCCBCTTTCCBCC-SCCEEE----TTEEECTT-----TSSCSSSCCCCC
T ss_pred hCCcCccccCEec-cceEEE----CCceeCcc-----CCccccCCCCCC
Confidence 5678999999998 643332 232 3322 367888887664
No 70
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=22.05 E-value=30 Score=30.39 Aligned_cols=43 Identities=16% Similarity=0.438 Sum_probs=25.4
Q ss_pred eecCCCCccccccceeeeeccccccccceeeEEEEEEcCCCCceeEEeeCCCCCCee
Q psy10064 53 IWCEGCNNHIGMGVRYNAEKKKVGMYYSTPVYQFRMKCHLCDSHFEIKTDPGNLDYV 109 (257)
Q Consensus 53 i~C~~C~~~I~kG~rfNA~K~~vg~Y~st~I~~F~~kC~~C~~~i~i~TDPkn~dYv 109 (257)
..|..|+..++.- ..+.-++.| ..|+.|.+.= |.+++..+.|+
T Consensus 135 f~C~~C~~~~~v~--------~~~~~~~~P-----~~Cp~C~~~~-f~l~~~~s~f~ 177 (279)
T 1ltl_A 135 FECRGCMRHHAVT--------QSTNMITEP-----SLCSECGGRS-FRLLQDESEFL 177 (279)
T ss_dssp EEETTTCCEEEEE--------CSSSSCCCC-----SCCTTTCCCC-EEECGGGCEEE
T ss_pred EEcCCCCCEEEEE--------ecCCcccCC-----CcCCCCCCCC-cEEeccccEEE
Confidence 5899999643221 112223455 4899998864 66666655554
No 71
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=21.44 E-value=32 Score=27.59 Aligned_cols=15 Identities=40% Similarity=0.747 Sum_probs=8.1
Q ss_pred eeeeecCCCCccccc
Q psy10064 50 PYNIWCEGCNNHIGM 64 (257)
Q Consensus 50 Pf~i~C~~C~~~I~k 64 (257)
|..-.|.+|+..|+-
T Consensus 4 ~~~~~C~~C~~~I~~ 18 (169)
T 2rgt_A 4 PEIPMCAGCDQHILD 18 (169)
T ss_dssp ---CBBSSSSSBCCS
T ss_pred CCCCccccCCCccCC
Confidence 334567777777763
No 72
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=20.97 E-value=34 Score=22.79 Aligned_cols=43 Identities=23% Similarity=0.458 Sum_probs=27.4
Q ss_pred EeceeeeecCCCCcccccccee-eeecccccc-ccceeeEEEEEEcCCCCceeE
Q psy10064 47 FELPYNIWCEGCNNHIGMGVRY-NAEKKKVGM-YYSTPVYQFRMKCHLCDSHFE 98 (257)
Q Consensus 47 fe~Pf~i~C~~C~~~I~kG~rf-NA~K~~vg~-Y~st~I~~F~~kC~~C~~~i~ 98 (257)
|..++...|..|+..|+-+.++ +| .|. |+.. -|+|..|...|.
T Consensus 6 y~~~~~~~C~~C~~~i~~~e~~~~~----~~~~~H~~-----CF~C~~C~~~L~ 50 (72)
T 3f6q_B 6 FQGSASATCERCKGGFAPAEKIVNS----NGELYHEQ-----CFVCAQCFQQFP 50 (72)
T ss_dssp CCCCTTCBCTTTCCBCCTTCEEEEE----TTEEEETT-----TSSCTTTCCCCG
T ss_pred ccCcCCccchhcCccccCCceEEEe----CcCeeCcC-----CCcccCCCCCCC
Confidence 4467888999999999976442 22 232 3322 256777777653
No 73
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=20.76 E-value=49 Score=22.58 Aligned_cols=12 Identities=17% Similarity=0.683 Sum_probs=10.1
Q ss_pred eeecCCCCcccc
Q psy10064 52 NIWCEGCNNHIG 63 (257)
Q Consensus 52 ~i~C~~C~~~I~ 63 (257)
..||..|+..|.
T Consensus 20 pt~C~~C~~~l~ 31 (65)
T 3uej_A 20 PTFCDHCGSLLW 31 (65)
T ss_dssp CCBCTTTCCBCC
T ss_pred CCcccccChhhh
Confidence 479999999874
No 74
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=20.72 E-value=38 Score=26.43 Aligned_cols=12 Identities=17% Similarity=0.338 Sum_probs=9.5
Q ss_pred eeeecCCCCccc
Q psy10064 51 YNIWCEGCNNHI 62 (257)
Q Consensus 51 f~i~C~~C~~~I 62 (257)
+...|..||..+
T Consensus 66 ~p~~C~~CG~~F 77 (105)
T 2gmg_A 66 KPAQCRKCGFVF 77 (105)
T ss_dssp CCCBBTTTCCBC
T ss_pred ECcChhhCcCee
Confidence 556899998765
No 75
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=20.25 E-value=59 Score=23.17 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=8.7
Q ss_pred eeeecCCCCcccc
Q psy10064 51 YNIWCEGCNNHIG 63 (257)
Q Consensus 51 f~i~C~~C~~~I~ 63 (257)
...+|..|+..++
T Consensus 14 ~~~rC~~C~kkvg 26 (64)
T 1wfh_A 14 RPNRCTVCRKRVG 26 (64)
T ss_dssp SCCCCTTTCCCCC
T ss_pred cCCcChhhCCccC
Confidence 3468998876544
No 76
>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1
Probab=20.05 E-value=48 Score=28.66 Aligned_cols=17 Identities=35% Similarity=0.821 Sum_probs=13.9
Q ss_pred eEEEEEEcCCCCceeEEe
Q psy10064 83 VYQFRMKCHLCDSHFEIK 100 (257)
Q Consensus 83 I~~F~~kC~~C~~~i~i~ 100 (257)
.|.|| ||-.|+..+-|.
T Consensus 151 FWQFY-KCe~CgKYvDId 167 (226)
T 2czr_A 151 FWQFY-KCEECGKYVDIE 167 (226)
T ss_dssp EEEEE-ECTTTCCEEEGG
T ss_pred EEEEE-ehhhcCceecHH
Confidence 68887 999999977654
Done!