RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10064
(257 letters)
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 218 bits (557), Expect = 2e-70
Identities = 87/255 (34%), Positives = 126/255 (49%), Gaps = 21/255 (8%)
Query: 1 MGERKGTNKYYPPDYDPSVGGLNKFLGTHALRERARKLHMGIMIIRFELPYNIWCEGCNN 60
MGERK NKYYPPD+DPS R+R + G +++RF P+N+ C+ C
Sbjct: 1 MGERKVLNKYYPPDFDPS---------KIPRRKRPKN---GQLVVRFMAPFNMRCDTCGE 48
Query: 61 HIGMGVRYNAEKKKVGM--YYSTPVYQFRMKCHLCDSHFEIKTDPGNLDYVIVSGARRQE 118
+I G ++NA K+KVG Y TP+++F +KC C + KTDP N DYV+ SGA R
Sbjct: 49 YIYKGTKFNARKEKVGNETYLGTPIFRFYIKCTKCLNEITFKTDPKNTDYVVESGATRNY 108
Query: 119 NRWNPLENEQIVPETKEVSRKLFDDPMYKLEHGTNDMSSSKSKASHLNKLLDRQESVWKN 178
+ L+ EQ KE +L D M KLE+ T D L +L + Q +
Sbjct: 109 -EADKLDEEQEERVEKEREEELAGDAMKKLENRTADSKREMEVLERLEELKELQSR--RA 165
Query: 179 DFDANRVLRDSFRKKKKQLKALQDKDNALLSKSSLSLKLVPEHKNDIRLASLYKYQHVKP 238
D D N +L FR++KK+ + +++D AL+ SL PE + D R A + +
Sbjct: 166 DVDVNSMLEALFRREKKEEEEEEEEDEALIK----SLSFGPETEEDRRRADDEDSEDDEE 221
Query: 239 KLNVKLKAPSSSGVS 253
+ S S
Sbjct: 222 DNDNTPSPKSGSSSP 236
>gnl|CDD|227463 COG5134, COG5134, Uncharacterized conserved protein [Function
unknown].
Length = 272
Score = 98.6 bits (245), Expect = 1e-24
Identities = 63/218 (28%), Positives = 113/218 (51%), Gaps = 15/218 (6%)
Query: 8 NKYYPPDYDPSVGGLNKFLGTHALRERARKL---HMGIMIIRFELPYNIWCEGCNNHIGM 64
KY PP+ N+ L + + KL + IR E P+ + C C N+I
Sbjct: 2 GKYIPPEG-------NRVLAQPLAKRKFDKLKNARPRGLSIRLETPFPVRCLNCENYIQK 54
Query: 65 GVRYNAEKKKVGM--YYSTPVYQFRMKCHLCDSHFEIKTDPGNLDYVIVSGARRQENRWN 122
G R+NA K+++G YY+T +Y+F +KCHLC + +++TDP N +YV+ SG RR+ +
Sbjct: 55 GTRFNAVKEEIGDKSYYTTKIYRFSIKCHLCSNPIDVRTDPKNTEYVVESGGRRKIEPQD 114
Query: 123 PLENEQIVPETKEVSRKLFDDPMYKLEHGTNDMSSSKSKASHLNKLLDRQESVWKNDFDA 182
E+ ++V + + K S K +S +N + + + +W + F +
Sbjct: 115 INEDPAKAENVEKVPESDAIEALEKQLTQQ---KSEKHNSSAINFIDELNKRLWSDPFVS 171
Query: 183 NRVLRDSFRKKKKQLKALQDKDNALLSKSSLSLKLVPE 220
++ LR FR++KK K + KD +L ++++L + ++P
Sbjct: 172 SQRLRKQFRERKKIEKKQEAKDLSLKNRAALDIDILPS 209
>gnl|CDD|235484 PRK05469, PRK05469, peptidase T; Provisional.
Length = 408
Score = 30.9 bits (71), Expect = 0.59
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 179 DFDANRVLRDSFRKKKKQLKALQDKDNALLSKSSLSLKLVPEHKN 223
DFD R+ F +K ++ + K NA + + L++ ++ N
Sbjct: 282 DFD-----REGFEARKALMQEIAKKVNAKYGEGRVELEIKDQYYN 321
>gnl|CDD|239159 cd02758, MopB_Tetrathionate-Ra, The MopB_Tetrathionate-Ra CD
contains tetrathionate reductase, subunit A, (TtrA) and
other related proteins. The Salmonella enterica
tetrathionate reductase catalyses the reduction of
trithionate but not sulfur or thiosulfate. Members of
this CD belong to the molybdopterin_binding (MopB)
superfamily of proteins.
Length = 735
Score = 30.8 bits (70), Expect = 0.84
Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 29/110 (26%)
Query: 55 CEGCNNHIGMGVRYNAEKKKV----GMYYS-----------TPVYQFRM----------- 88
C GC G+ VR + E KV G Y TP+ +
Sbjct: 4 CLGCWTQCGIRVRVDKETGKVLRIAGNPYHPLNTAPSLPYNTPLKESLYLSLVGENGLKA 63
Query: 89 KCHLC---DSHFEIKTDPGNLDYVIVSGARRQENRWNPLENEQIVPETKE 135
+ C ++ + DP + + R +W P+ EQ++ E E
Sbjct: 64 RATACARGNAGLQYLYDPYRVLQPLKRVGPRGSGKWKPISWEQLIEEVVE 113
>gnl|CDD|233791 TIGR02231, TIGR02231, conserved hypothetical protein. This family
consists of proteins over 500 amino acids long in
Caenorhabditis elegans and several bacteria (Pseudomonas
aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans,
etc.). The function is unknown.
Length = 525
Score = 29.3 bits (66), Expect = 2.0
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 138 RKLFDDPMYKLEHGTNDMSSSKSKA--SHLNKLLDRQESVWKNDFDANRVLRDSFRKKKK 195
K +D L D S+ +++ + D S + +R R+ +K
Sbjct: 101 AKFLEDIREGLTEPIKD-SAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIRELEK 159
Query: 196 QLKALQDKDNALLSKSS 212
QL LQ++ NALL+ S
Sbjct: 160 QLSELQNELNALLTGKS 176
>gnl|CDD|119023 pfam10503, Esterase_phd, Esterase PHB depolymerase. This family of
proteins include acetyl xylan esterases (AXE), feruloyl
esterases (FAE), and poly(3-hydroxybutyrate) (PHB)
depolymerases.
Length = 226
Score = 28.5 bits (63), Expect = 2.9
Identities = 17/60 (28%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 46 RFELPYNIWCEGCNNHI---GMGVRYNAEKKKVGMYYSTPVYQFRMKCHLCDSHFEIKTD 102
R +P + GC H G R NA + G P R H C FE D
Sbjct: 18 RGAMPLVVMLHGCQQHADDFAAGTRMNALADEHGFAVLYPEQSLRAHAHGCWHWFEPDHD 77
>gnl|CDD|215697 pfam00077, RVP, Retroviral aspartyl protease. Single domain
aspartyl proteases from retroviruses, retrotransposons,
and badnaviruses (plant dsDNA viruses). These proteases
are generally part of a larger polyprotein; usually
pol, more rarely gag. Retroviral proteases appear to be
homologous to a single domain of the two-domain
eukaryotic aspartyl proteases such as pepsins,
cathepsins, and renins (pfam00026).
Length = 99
Score = 27.2 bits (61), Expect = 3.1
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 11 YPPDYDPSVGGLNKFLGTHA----LRERARKLHMGIMIIRFELPYNIWCEGCNNHIGMGV 66
+PP ++GG+ + L E K G ++ P NI G + +G
Sbjct: 39 WPPWGPTTIGGIGGQIRVKQSIQILVEIGGKKFRGTFLVLPSTPVNIL--GRDLLTQLGA 96
Query: 67 RYN 69
+ N
Sbjct: 97 KLN 99
>gnl|CDD|239846 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain present
in RalBP1 proteins, also known as RLIP, RLIP76 or
cytocentrin. RalBP1 plays an important role in
endocytosis during interphase. During mitosis, RalBP1
transiently associates with the centromere and has been
shown to play an essential role in the proper assembly
of the mitotic apparatus. RalBP1 is an effector of the
Ral GTPase which itself is an effector of Ras. RalBP1
contains a RhoGAP domain, which shows weak activity
towards Rac1 and Cdc42, but not towards Ral, and a Ral
effector domain binding motif. Small GTPases cluster
into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 182
Score = 27.8 bits (62), Expect = 3.8
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 155 MSSSKSKASHLNKLLDRQESVWKNDFDANRV 185
+S KSK L +R+ES +++ V
Sbjct: 44 VSGIKSKVDELKAAYNRRESPNLEEYEPPTV 74
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 28.4 bits (64), Expect = 4.1
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 91 HLCDSHFEIKTDPGNL--DYVIV-SGARRQENR 120
L F++KTD G VI+ +GA ++
Sbjct: 87 ELEGGPFKVKTDKGTYEAKAVIIATGAGARKLG 119
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 28.1 bits (63), Expect = 4.7
Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 11/131 (8%)
Query: 123 PLENEQIVPETKEVSRKLFDDPMYKLEHGTNDMSSSKSKASHLNKLLDRQESVWKNDFDA 182
P + V K + D N+ K + + +L E + +
Sbjct: 242 PNYYYKDEKYLDVVPLKAYADLEKLF----NEALDEKFERDKIKQLASELEKKLEKELK- 296
Query: 183 NRVLRDSFRKKKKQLKALQDKDNALLSKSSL---SLKLVPEHKNDIRLASLYKYQHVKPK 239
L + K++ +L+ L+ L K L +L+L+ E +RLA Y + +K +
Sbjct: 297 --KLENKLEKQEDELEELEKAAEELRQKGELLYANLQLIEEGLKSVRLADFYGNEEIKIE 354
Query: 240 LNVKLKAPSSS 250
L+ K K PS +
Sbjct: 355 LD-KSKTPSEN 364
>gnl|CDD|183236 PRK11619, PRK11619, lytic murein transglycosylase; Provisional.
Length = 644
Score = 28.1 bits (63), Expect = 6.2
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 35/89 (39%)
Query: 116 RQENRWNPLENE--------QIVPETKEVSRKLFDDPMYKLEHGTNDMSSSKSKASHLNK 167
RQE+ WNP QI+P T + K+F P Y SSS ++
Sbjct: 502 RQESAWNPKARSPVGASGLMQIMPGTATHTVKMFSIPGY---------SSS-------SQ 545
Query: 168 LLDRQ----------ESVWKNDFDANRVL 186
LLD + E V++ F NR+L
Sbjct: 546 LLDPETNINIGTSYLEYVYQQ-FGNNRIL 573
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 27.9 bits (63), Expect = 6.4
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 13/87 (14%)
Query: 126 NEQIVPET--KEVSRKLFDDPMYKLEHGTNDMSSSKSKASHLNKLLDR--QESVWKNDFD 181
N Q V KE+ + L D HG ++ S +LLD +
Sbjct: 107 NGQPVSLAQLKELGQLLID------IHGQHEHQSLLKPELQR-QLLDAFAGLEEL--AQE 157
Query: 182 ANRVLRDSFRKKKKQLKALQDKDNALL 208
A + ++++ +++L+ LQ+K+
Sbjct: 158 AYQEAYQAWKQARRELEDLQEKERERA 184
>gnl|CDD|237371 PRK13381, PRK13381, peptidase T; Provisional.
Length = 404
Score = 27.6 bits (62), Expect = 6.6
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 14/65 (21%)
Query: 153 NDMSSSKSKASHLNKLLDRQESVWKNDFDANRVLRDSFRKKKKQLKALQDKDNALLSKSS 212
ND+ + +KA L KL+ R DFD D F +K+ ++ + K NA +
Sbjct: 263 NDLQGNVNKA-KL-KLIIR-------DFD-----LDGFEARKQFIEEVVAKINAKYPTAR 308
Query: 213 LSLKL 217
+SL L
Sbjct: 309 VSLTL 313
>gnl|CDD|216179 pfam00898, Orbi_VP2, Orbivirus outer capsid protein VP2. VP2 acts
as an anchor for VP1 and VP3. VP2 contains a
non-specific DNA and RNA binding domain in the
N-terminus.
Length = 946
Score = 27.3 bits (61), Expect = 9.3
Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 120 RWNPLENEQIV-PETKEVSRKLFDDPMYKLE 149
+ PL N+ IV P +++ + +DD + +
Sbjct: 46 NYRPLRNDGIVLPRLLDITLRAYDDRKSQKK 76
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.133 0.397
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,847,892
Number of extensions: 1179609
Number of successful extensions: 1034
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1026
Number of HSP's successfully gapped: 23
Length of query: 257
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 162
Effective length of database: 6,723,972
Effective search space: 1089283464
Effective search space used: 1089283464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.2 bits)