RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10064
(257 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.081
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 193 KKKQLKALQDKDNALLSKSS-LSLKLVPEHKNDIRLA----SLYKYQHVKPKLNVKLKAP 247
++Q++ +K N+ L + + LV KN + ++ SLY + L K KAP
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV-VSGPPQSLY---GLNLTLR-KAKAP 399
Query: 248 SSSGVSR 254
S SR
Sbjct: 400 SGLDQSR 406
Score = 27.3 bits (60), Expect = 6.6
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 16/69 (23%)
Query: 148 LEHGTNDMSSSKSKASHLNKLLDRQESVWKNDFDANRVLRDSFRKKKKQLKALQDKDNAL 207
L HG+ + AS F A++ L++ F K + D+
Sbjct: 11 LSHGSLEHVLLVPTASF---------------FIASQ-LQEQFNKILPEPTEGFAADDEP 54
Query: 208 LSKSSLSLK 216
+ + L K
Sbjct: 55 TTPAELVGK 63
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.10
Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 27/52 (51%)
Query: 193 KKKQLKALQDKDNALLSKSSLSLKL-VPEHKNDIRLASLYKYQHVKPKLNVK 243
+K+ LK LQ SLKL + S P L +K
Sbjct: 18 EKQALKKLQA-----------SLKLYADD--------S-------APALAIK 43
Score = 31.5 bits (70), Expect = 0.15
Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
Query: 234 QHVKPKL--NVKLKAPSSS 250
Q +K KL ++KL A S+
Sbjct: 20 QALK-KLQASLKLYADDSA 37
Score = 28.0 bits (61), Expect = 1.9
Identities = 4/15 (26%), Positives = 7/15 (46%), Gaps = 1/15 (6%)
Query: 9 KYYPPDYDPSVGGLN 23
K Y D P++ +
Sbjct: 30 KLYADDSAPAL-AIK 43
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.9 bits (64), Expect = 1.3
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 5/38 (13%)
Query: 115 RRQENRWNP-LENEQIVPETKEVSRKLFDDPMYKLEHG 151
++ R P L PE K K+ + G
Sbjct: 8 DKRAGRRGPNLNIVLTCPECKVYPPKIVERF----SEG 41
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 1.4
Identities = 22/133 (16%), Positives = 41/133 (30%), Gaps = 37/133 (27%)
Query: 99 IKTDPGNLDYVIVSGARRQENRW--NPLENEQIVPETKEVSRKLFDDPMYKLEHGTNDMS 156
+ + + V R ++ +P++ EQ P D +Y ND
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY------NDNQ 124
Query: 157 SSKSKASHLNKL-LDRQESVWKNDFDANRVLRDSFRKKKKQLKALQDKDNALL------S 209
K + R + K LR + L L+ N L+
Sbjct: 125 V-------FAKYNVSRLQPYLK--------LR-------QALLELRPAKNVLIDGVLGSG 162
Query: 210 KSSLSLKLVPEHK 222
K+ ++L + +K
Sbjct: 163 KTWVALDVCLSYK 175
Score = 29.1 bits (64), Expect = 2.0
Identities = 33/175 (18%), Positives = 56/175 (32%), Gaps = 41/175 (23%)
Query: 70 AEKKKVGMYYSTPVYQFRMKCHLCDS---HFEIKTDPGNLD-YVIVSGARRQENRWNPLE 125
EK+ S P +K L + H I +D Y I + L+
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSI------VDHYNIPKTFDSDDLIPPYLD 470
Query: 126 N-------------EQIVPETKEVSRKLFDDPMY---KLEHGTNDMSSSKSKASHLNKLL 169
E E + R +F D + K+ H + ++S S + L +L
Sbjct: 471 QYFYSHIGHHLKNIEHP--ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 170 DRQESVWKNDFDANRVLRD--SF---------RKKKKQL--KALQDKDNALLSKS 211
+ + ND R++ F K L AL +D A+ ++
Sbjct: 529 FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
Score = 28.7 bits (63), Expect = 2.4
Identities = 17/111 (15%), Positives = 41/111 (36%), Gaps = 17/111 (15%)
Query: 150 HGTNDMSSSKSKASHLNK-LLDRQESVWKNDFDANRVLRDSFRK--KKKQLKALQDKDNA 206
H + M + + K +L E + ++FD V D + K+++ + +A
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-DMPKSILSKEEIDHIIMSKDA 60
Query: 207 LLSKSSLSLKLVPEHKNDIR-------------LASLYKYQHVKPKLNVKL 244
+ L L+ + + ++ L S K + +P + ++
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Score = 28.3 bits (62), Expect = 3.1
Identities = 39/266 (14%), Positives = 69/266 (25%), Gaps = 90/266 (33%)
Query: 29 HALRERARKL--HMGIMIIRFELPYNIWCEGCNNHIGMG-------VRYNAEKKKVGMYY 79
LR+ +L ++I G+ KV
Sbjct: 138 LKLRQALLELRPAKNVLI----------------D-GVLGSGKTWVALDVCLSYKVQCKM 180
Query: 80 STPVYQFRMKCHLCDSHFEIKTDPGNLDYVIV-SGARRQENRWNPLENEQIVPETKEVSR 138
++ +K C+S + L Y I + R ++ N + R
Sbjct: 181 DFKIFWLNLKN--CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH---SIQAELR 235
Query: 139 KLFDDPMYKLEHGTNDMSSSKSKASHLNKL--LD--RQESVWKNDFDAN-RVL---RDS- 189
+L Y+ N L L + W F+ + ++L R
Sbjct: 236 RLLKSKPYE------------------NCLLVLLNVQNAKAWN-AFNLSCKILLTTRFKQ 276
Query: 190 -------FRKKKKQLKALQD---KDNA--LLSK----------------SSLSLKLVPEH 221
L D LL K + L ++ E
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 222 KNDIRLASLYKYQHVK-PKLNVKLKA 246
D LA+ ++HV KL +++
Sbjct: 337 IRD-GLATWDNWKHVNCDKLTTIIES 361
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil,
cytoplasm, disease mutation, ectodermal dysplasia,
HOST-virus interaction; 3.20A {Homo sapiens}
Length = 96
Score = 26.7 bits (58), Expect = 3.3
Identities = 13/86 (15%), Positives = 32/86 (37%), Gaps = 13/86 (15%)
Query: 127 EQIVPETKEVSRKLFDDPMYKLEHGTNDMSSSKSKASHLNKLLDRQES------------ 174
+ V ++ +D +L+ + + + L + ++ +
Sbjct: 5 KSSVVGSERKRGMQLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIVMETVPVLKAQA 64
Query: 175 -VWKNDFDANRVLRDSFRKKKKQLKA 199
++K DF A R R+ +KK+ L+
Sbjct: 65 DIYKADFQAERQAREKLAEKKELLQE 90
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 27.4 bits (60), Expect = 4.4
Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 2/90 (2%)
Query: 81 TPVYQFRMKCHLCDSHFEIKTDPGNLDYVIVSGARRQENRWNPLENEQIVPETKEVSRKL 140
T V CHLCD+ + ++ + W V ++ L
Sbjct: 49 TGVTGVTKSCHLCDAGQQHLQHGAA--FLTDYNNQADTTWWQSQTMLAGVQYPNSINLTL 106
Query: 141 FDDPMYKLEHGTNDMSSSKSKASHLNKLLD 170
+ + + +S+ ++ + K
Sbjct: 107 HLGKAFDITYVRLKFHTSRPESFAIYKRTR 136
>1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel,
intramolecular transglucosylation, isomerase; HET: MLZ
MLY; 1.90A {Sulfolobus acidocaldarius} SCOP: b.71.1.1
c.1.8.1
Length = 720
Score = 27.6 bits (61), Expect = 4.6
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 7 TNKYYPPDY---DPSVGGLNKFLGTHALRERARKLHMGIMI 44
+ Y D+ + +GG ++ L E A + +GI+
Sbjct: 47 NHGYDVIDHSRINDELGGEKEY---RRLIETAHTIGLGIIQ 84
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Length = 98
Score = 25.4 bits (55), Expect = 8.1
Identities = 12/78 (15%), Positives = 18/78 (23%), Gaps = 15/78 (19%)
Query: 51 YNIWCEGCNNHIGMGVRYNAEKKKVGMYYSTPVYQFRMKCHLCDSH----FEIKTDPGNL 106
I C C G Y + Y +C H F +
Sbjct: 30 LGIPCNNCKQFPIEGKCYKCTEC--------IEYHLCQECFDSYCHLSHTFTFREKR--- 78
Query: 107 DYVIVSGARRQENRWNPL 124
+ S +R + P
Sbjct: 79 NQKWRSLEKRADEVSGPS 96
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.397
Gapped
Lambda K H
0.267 0.0674 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,849,503
Number of extensions: 219637
Number of successful extensions: 413
Number of sequences better than 10.0: 1
Number of HSP's gapped: 409
Number of HSP's successfully gapped: 21
Length of query: 257
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 165
Effective length of database: 4,133,061
Effective search space: 681955065
Effective search space used: 681955065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.5 bits)