RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10064
         (257 letters)



>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease)
           {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 105

 Score = 24.9 bits (54), Expect = 6.2
 Identities = 8/60 (13%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 85  QFRMKCHLCDSHFEIKTDPGNLDYVIVSGARRQENRWNPLENEQIVPETKEVSRKLFDDP 144
           Q      L  + +  +   G      ++  +   + +  L+  ++  +  E  R  F +P
Sbjct: 5   QLIDIAILVGTDY-NEGVKGVGVKKALNYIKTYGDIFRALKALKVNIDHVEEIRNFFLNP 63


>d3bzka2 a.60.2.6 (A:564-636) Transcriptional accessory factor Tex
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 73

 Score = 23.9 bits (52), Expect = 6.2
 Identities = 7/28 (25%), Positives = 14/28 (50%)

Query: 122 NPLENEQIVPETKEVSRKLFDDPMYKLE 149
           NPL+   + PET  + +++  D    + 
Sbjct: 2   NPLDASAVHPETYPLVQRIAADTERDIR 29


>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein
          2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 85

 Score = 23.8 bits (51), Expect = 8.7
 Identities = 8/46 (17%), Positives = 10/46 (21%), Gaps = 8/46 (17%)

Query: 51 YNIWCEGCNNHIGMGVRYNAEKKKVGMYYSTPVYQFRMKCHLCDSH 96
            I C  C      G  Y   +           Y    +C     H
Sbjct: 23 LGIPCNNCKQFPIEGKCYKCTEC--------IEYHLCQECFDSYCH 60


>d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis
          [TaxId: 1402]}
          Length = 387

 Score = 25.2 bits (54), Expect = 9.0
 Identities = 7/35 (20%), Positives = 13/35 (37%)

Query: 11 YPPDYDPSVGGLNKFLGTHALRERARKLHMGIMII 45
          Y  + +   GG N       + +RA    M ++  
Sbjct: 64 YDANGNGYGGGNNDLEKAIQIGKRATANGMKLLAD 98


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 963,822
Number of extensions: 45087
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 9
Length of query: 257
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,268,006
Effective search space: 220633044
Effective search space used: 220633044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.9 bits)