Query psy10065
Match_columns 215
No_of_seqs 234 out of 1053
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 16:59:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10065.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10065hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_F RP14, S2, YS8, 40S ribo 100.0 1E-67 3.5E-72 457.8 17.6 171 42-214 37-207 (225)
2 2xzm_G Ribosomal protein S7 co 100.0 9.4E-66 3.2E-70 439.5 16.9 173 39-211 5-178 (200)
3 2zkq_g 40S ribosomal protein S 100.0 1.8E-67 6.3E-72 451.0 0.0 174 41-214 13-186 (204)
4 1iqv_A Ribosomal protein S7; R 100.0 2.9E-63 1E-67 427.8 16.9 171 42-215 15-201 (218)
5 3r8n_G 30S ribosomal protein S 100.0 3.1E-42 1.1E-46 283.3 13.3 120 89-215 14-133 (151)
6 1rss_A Ribosomal protein S7; R 100.0 4.9E-42 1.7E-46 282.1 14.2 119 89-214 10-128 (151)
7 1hus_A Ribosomal protein S7; R 100.0 4.4E-42 1.5E-46 283.5 13.7 119 90-215 15-133 (155)
8 3i1m_G 30S ribosomal protein S 100.0 1.2E-41 4.3E-46 286.4 13.3 129 79-214 1-133 (179)
9 3gty_S TF, 30S ribosomal prote 100.0 1.5E-41 5E-46 278.7 13.1 120 89-215 8-127 (149)
10 3bbn_G Ribosomal protein S7; s 100.0 4.2E-42 1.4E-46 283.6 7.2 128 79-214 1-133 (155)
11 3ezx_A MMCP 1, monomethylamine 26.7 67 0.0023 26.3 4.3 28 94-126 3-30 (215)
12 4h7y_A Dual specificity protei 21.5 85 0.0029 25.6 3.8 32 112-148 108-139 (161)
No 1
>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F
Probab=100.00 E-value=1e-67 Score=457.76 Aligned_cols=171 Identities=68% Similarity=1.036 Sum_probs=165.1
Q ss_pred CcccceeccccCCCceeecCCcccceeccccccceecCCCCcccccccCccCChhHHHHHHHhhccccccchHHHHHHHH
Q psy10065 42 LPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIV 121 (215)
Q Consensus 42 ~~~~klF~kw~~~~v~v~D~~l~~yi~~~~k~~~~~phs~gr~~~krf~k~~~piverliN~LM~~g~n~GKK~~A~rIV 121 (215)
+.++|||||||++||+|+||||++||+|+ +++++|||+|||++|||.|++||+|+||||+||++|+|+|||++|++||
T Consensus 37 ~~~~~lf~kw~~~~v~v~d~~l~~yi~~~--~~~~~pht~gr~~~krf~K~~~piv~rliN~LM~~~~~~GKKs~A~~Iv 114 (225)
T 3u5c_F 37 QTEIKLFNKWSFEEVEVKDASLVDYVQVR--QPIFVAHTAGRYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRII 114 (225)
T ss_dssp HHSSCCSSSCCCSSCCCSSTTTBTTBCCC--SCCSSSCCCCCCSSSTTGGGGSCHHHHHHHHHSCSGGGSSCHHHHHHHH
T ss_pred chhhhhcCCCCCcceEEeccchhheeecc--CCceecccCCCccccCCCCCCCcHHHHHHHHHHhcCccCCcHHHHHHHH
Confidence 56899999999999999999999999998 2489999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHhcCCccceEEeccCCeeeEEeeecChhHHHHHHHHHHHHHHHhhhcCCCCcHHHHH
Q psy10065 122 KHAFEIIHLLTGENPLQILVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECV 201 (215)
Q Consensus 122 ~~AfeiI~~~t~~nPiqVl~~AI~N~~P~~es~Rig~gG~~yqvPV~vsp~Rr~~lAiwlI~~~ar~~~~r~~ks~~e~L 201 (215)
|+||++|+++|++|||+||++||+|++|++|++|+|+||++|||||+|+|.||++|||+||+++||+++||++++|++||
T Consensus 115 y~AfeiI~~kT~~nPl~Vl~~AI~Nv~P~vesrRvg~gG~tyqVPVeV~p~Rr~~LAiRWIi~aark~~~R~~ksmaerL 194 (225)
T 3u5c_F 115 KHTLDIINVLTDQNPIQVVVDAITNTGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETL 194 (225)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHTTSCSEEEECCCSSSSCCCEEEECCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred HHHHHHHHHhcCCCceeHHHHHHHhCCCCeeEEEeccCCEEEEEeeecCHHHHHHHHHHHHHHHHHhhccCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999995555999999999999999999
Q ss_pred HHHHHHHhcccCC
Q psy10065 202 ADELINAAKFNQN 214 (215)
Q Consensus 202 A~EII~Aa~~~g~ 214 (215)
|+|||||++|+|+
T Consensus 195 A~ELidAa~~~G~ 207 (225)
T 3u5c_F 195 AEELINAAKGSST 207 (225)
T ss_dssp HHHHHHHHTTCSS
T ss_pred HHHHHHHHhCCCc
Confidence 9999999999996
No 2
>2xzm_G Ribosomal protein S7 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_G 3j0o_T 3j0l_T
Probab=100.00 E-value=9.4e-66 Score=439.48 Aligned_cols=173 Identities=57% Similarity=0.982 Sum_probs=163.9
Q ss_pred CCCCcccceeccccCCCceeecCCcccceecc-ccccceecCCCCcccccccCccCChhHHHHHHHhhccccccchHHHH
Q psy10065 39 PAELPEIKLFGRWSCDDVQVSDMSLQDYIAVK-EKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMA 117 (215)
Q Consensus 39 ~~~~~~~klF~kw~~~~v~v~D~~l~~yi~~~-~k~~~~~phs~gr~~~krf~k~~~piverliN~LM~~g~n~GKK~~A 117 (215)
.....++|||||||++||+|+||||++||+|+ .|+++++|||+|||++|+|++++||+|++|||+||++|+|+|||++|
T Consensus 5 ~~~~~~~~lf~kw~~~~v~v~d~~l~~yi~~~~~k~~~~~pht~gr~~~k~f~k~~~~lV~kliN~lM~~g~n~GKKs~A 84 (200)
T 2xzm_G 5 KGFATQPKLFGKWNYDEVKIQDPCFQNYIACTTTKSQVFVPHTAGRYQVKKFRKTQCPIVERLIGTLMFHGRNAGKKALC 84 (200)
T ss_dssp ----CCCCGGGSCCGGGCCCCSSSGGGSCSTTCTTTCCSSSCCCCCCSSSSSGGGGSCHHHHHHHHHSCSTTTCCCHHHH
T ss_pred cccchhccccCCcCCCCeeecccchhhceeeccccCceecCCCcccccccccccccChHHHHHHHHHhcCCCCCCCHHHH
Confidence 34556899999999999999999999999995 67789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHhcCCccceEEeccCCeeeEEeeecChhHHHHHHHHHHHHHHHhhhcCCCCcH
Q psy10065 118 VRIVKHAFEIIHLLTGENPLQILVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTI 197 (215)
Q Consensus 118 ~rIV~~AfeiI~~~t~~nPiqVl~~AI~N~~P~~es~Rig~gG~~yqvPV~vsp~Rr~~lAiwlI~~~ar~~~~r~~ks~ 197 (215)
++|||+||++|+++|++||++||++||+|++|++|+++++.||.+|||||||+|.||++|||+||+++||+++||++++|
T Consensus 85 ~~Iv~~A~~~I~~kt~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqVPveV~p~Rr~~lAirWii~~ar~~~~R~~k~m 164 (200)
T 2xzm_G 85 IKVVKNAFEIIHLVTGRNPLEVFVGAVQNAGPREDSTRIGTAGVVRKQAVDVAPMRRVNLAIYFIIKGCRESAFKSMRSI 164 (200)
T ss_dssp HHHHHHHHHHHHHHHCSCTHHHHHHHHHHSSCSEEEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTSSSCH
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHhCCCceEEEEeccCCEEEEEeeECCHHHHHHHHHHHHHHHHHhhcccCCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999555599999998999999
Q ss_pred HHHHHHHHHHHhcc
Q psy10065 198 AECVADELINAAKF 211 (215)
Q Consensus 198 ~e~LA~EII~Aa~~ 211 (215)
++|||+|||||++|
T Consensus 165 ~e~LA~EiidAa~~ 178 (200)
T 2xzm_G 165 AETLADEIINAEKN 178 (200)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999999
No 3
>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protei complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.8e-67 Score=451.04 Aligned_cols=174 Identities=90% Similarity=1.327 Sum_probs=166.7
Q ss_pred CCcccceeccccCCCceeecCCcccceeccccccceecCCCCcccccccCccCChhHHHHHHHhhccccccchHHHHHHH
Q psy10065 41 ELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRI 120 (215)
Q Consensus 41 ~~~~~klF~kw~~~~v~v~D~~l~~yi~~~~k~~~~~phs~gr~~~krf~k~~~piverliN~LM~~g~n~GKK~~A~rI 120 (215)
..+++|||||||++||+|+||||++||+++.|+++++|||+|||++|+|+|++||+|++|||+||++|+|+|||++|++|
T Consensus 13 ~~~~~~lf~kw~~~~v~v~d~~l~~yi~~~~~~~~~~pht~gr~~~k~f~k~~~~lV~kliN~lM~~g~n~GKKs~A~~I 92 (204)
T 2zkq_g 13 ETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRI 92 (204)
Confidence 34589999999999999999999999999766779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHhcCCccceEEeccCCeeeEEeeecChhHHHHHHHHHHHHHHHhhhcCCCCcHHHH
Q psy10065 121 VKHAFEIIHLLTGENPLQILVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAEC 200 (215)
Q Consensus 121 V~~AfeiI~~~t~~nPiqVl~~AI~N~~P~~es~Rig~gG~~yqvPV~vsp~Rr~~lAiwlI~~~ar~~~~r~~ks~~e~ 200 (215)
||+||++|+++|++||++||++||+|++|++|+++++.||.+|||||||+|.||++|||+||+++||+++||++++|++|
T Consensus 93 vy~A~~~I~~kt~~nPl~Vl~~Ai~Nv~P~~evk~~rvGG~tyqVPveV~p~Rr~~lAirWii~~ar~~~~R~~k~m~e~ 172 (204)
T 2zkq_g 93 VKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAEC 172 (204)
Confidence 99999999999999999999999999999999999999999999999999999999999555599999888999999999
Q ss_pred HHHHHHHHhcccCC
Q psy10065 201 VADELINAAKFNQN 214 (215)
Q Consensus 201 LA~EII~Aa~~~g~ 214 (215)
||+|||||++|+|+
T Consensus 173 LA~ElidAa~~~g~ 186 (204)
T 2zkq_g 173 LADELINAAKGSSN 186 (204)
Confidence 99999999999986
No 4
>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP: a.75.1.1
Probab=100.00 E-value=2.9e-63 Score=427.77 Aligned_cols=171 Identities=46% Similarity=0.671 Sum_probs=140.3
Q ss_pred CcccceeccccCCCceeecCCcccceeccccccceecCCCCcccccccCccCChhHHHHHHHhhc---------------
Q psy10065 42 LPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMM--------------- 106 (215)
Q Consensus 42 ~~~~klF~kw~~~~v~v~D~~l~~yi~~~~k~~~~~phs~gr~~~krf~k~~~piverliN~LM~--------------- 106 (215)
.+++|||||||++||+|+||||++||+++| .++|||+|||++|+|+++++|||+||||+||+
T Consensus 15 ~~~~~lf~kws~~dv~v~dp~l~~yi~~~p---~~~Pht~gr~~~k~f~k~~~~iV~rliN~lM~~~~~~~~~~~~~~~~ 91 (218)
T 1iqv_A 15 PHEIKVMGRWSTEDVEVKDPSLKPYINLEP---RLLPHTHGRHAKKHFGKANVHIVERLINKVMRSGGSHYKVAGHFMRR 91 (218)
T ss_dssp ---CCBTTTBCCTTCCCCCTTTGGGSBCSC---C------------------CBHHHHHHHHHHTTCCC-----------
T ss_pred cccccccccccCCCCeecCCchhhhcccCC---ccCCCcchHHHhhhcccccChHHHHHHhHhhhccccccccccccccc
Confidence 348999999999999999999999999988 79999999999999999999999999999999
Q ss_pred ccc-ccchHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhcCCccceEEeccCCeeeEEeeecChhHHHHHHHHHHHHH
Q psy10065 107 HGR-NNAKKLMAVRIVKHAFEIIHLLTGENPLQILVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTG 185 (215)
Q Consensus 107 ~g~-n~GKK~~A~rIV~~AfeiI~~~t~~nPiqVl~~AI~N~~P~~es~Rig~gG~~yqvPV~vsp~Rr~~lAiwlI~~~ 185 (215)
+|+ |+|||++|++|||+||++|+++|++|||+||++||+|++|++|+++++.||++|||||||+|.||++|||+||+++
T Consensus 92 ~~r~n~GKK~~A~~Iv~~Af~iI~~~t~~nPl~Vl~~Ai~N~~P~~ev~~~r~GG~~yqvPV~V~p~Rr~~lAirwI~~~ 171 (218)
T 1iqv_A 92 EHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALG 171 (218)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHSCSCEEEEEEETTEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHhCCCceEEEEeccCCEEEEEeeECCHHHHHHHHHHHHHHH
Confidence 888 8999999999999999999999999999999999999999999999999999999999999999999999555599
Q ss_pred HHhhhcCCCCcHHHHHHHHHHHHhcccCCC
Q psy10065 186 AREAAFRNIKTIAECVADELINAAKFNQNR 215 (215)
Q Consensus 186 ar~~~~r~~ks~~e~LA~EII~Aa~~~g~s 215 (215)
|++++||++++|++|||+|||+|++|+|++
T Consensus 172 ar~~~~R~~ksm~e~LA~Eii~Aa~~~g~s 201 (218)
T 1iqv_A 172 ASAKCYRTKMSFAEALAEEIILAANKDPKS 201 (218)
T ss_dssp HHHHHHHSSSCHHHHHHHHHHHHHTTCTTC
T ss_pred HHhhcccCCCcHHHHHHHHHHHHHhCCCCc
Confidence 999988999999999999999999999853
No 5
>3r8n_G 30S ribosomal protein S7; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_G* 3j18_G 3oaq_G 3ofa_G 3ofx_G 3ofo_G 3r8o_G 4gd1_G 4gd2_G 3sfs_G* 3ofp_G 3fih_G* 2wwl_G 3oar_G 3ofb_G 3ofy_G 4a2i_G 2gy9_G 2gyb_G
Probab=100.00 E-value=3.1e-42 Score=283.32 Aligned_cols=120 Identities=28% Similarity=0.334 Sum_probs=112.1
Q ss_pred cCccCChhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhcCCccceEEeccCCeeeEEeee
Q psy10065 89 FRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGENPLQILVTAIINSGPREDSTRIGRAGTVRRQAVD 168 (215)
Q Consensus 89 f~k~~~piverliN~LM~~g~n~GKK~~A~rIV~~AfeiI~~~t~~nPiqVl~~AI~N~~P~~es~Rig~gG~~yqvPV~ 168 (215)
-++++||+|++|||+||++ |||++|++|||+||++|+++|++||++||++||+|++|++|++++..||.+|||||+
T Consensus 14 dp~~~~~lv~kliN~lM~~----GKK~~A~~Iv~~a~~~I~~kt~~nPl~vl~~Ai~Nv~P~~evks~rvGG~tyqvPv~ 89 (151)
T 3r8n_G 14 DPKFGSELLAKFVNILMVD----GKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVE 89 (151)
T ss_dssp CTTTCCHHHHHHHHHHCCT----TCHHHHHHHHHHHHHHHHTTTCSCSHHHHHHHHHHHCCSEEECCCCCSSCCCCCEEE
T ss_pred CCCcCCHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeEEEEEeeCCEEEEEecc
Confidence 3678999999999999998 999999999999999999999999999999999999999997777778999999999
Q ss_pred cChhHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHhcccCCC
Q psy10065 169 VSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKFNQNR 215 (215)
Q Consensus 169 vsp~Rr~~lAiwlI~~~ar~~~~r~~ks~~e~LA~EII~Aa~~~g~s 215 (215)
|+|.||++||||||+++|++ |++++|++|||+|||||++|+|.+
T Consensus 90 v~~~Rr~~lAirWii~~ar~---r~~k~m~~~LA~ElidA~~~~g~a 133 (151)
T 3r8n_G 90 VRPVRRNALAMRWIVEAARK---RGDKSMALRLANELSDAAENKGTA 133 (151)
T ss_dssp CCHHHHHHHHHHHHHHHHHT---CCSSCHHHHHHHHHHHHHTTCSSH
T ss_pred cCHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHhCcchh
Confidence 99999999999555599996 779999999999999999999864
No 6
>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G* 1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G 1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G 2zm6_G 3fic_G* 3mr8_G ...
Probab=100.00 E-value=4.9e-42 Score=282.13 Aligned_cols=119 Identities=29% Similarity=0.331 Sum_probs=112.6
Q ss_pred cCccCChhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhcCCccceEEeccCCeeeEEeee
Q psy10065 89 FRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGENPLQILVTAIINSGPREDSTRIGRAGTVRRQAVD 168 (215)
Q Consensus 89 f~k~~~piverliN~LM~~g~n~GKK~~A~rIV~~AfeiI~~~t~~nPiqVl~~AI~N~~P~~es~Rig~gG~~yqvPV~ 168 (215)
-++++||+|++|||+||++ |||++|++|||+||++|+++|++||++||++||+|++|++|+++++.||.+||||||
T Consensus 10 dp~~~~~lv~kliN~lM~~----GKKs~A~~Iv~~a~~~i~~kt~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqvPv~ 85 (151)
T 1rss_A 10 DLVYGDVLVTAFINKIMRD----GKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQVPME 85 (151)
T ss_dssp CTTTCCHHHHHHHHHHCCT----TCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHCCSEEEEEEEETTEEEEEEEE
T ss_pred CCCcCCHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHhCCCceEEEEeecCCEEEEEeee
Confidence 3678999999999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHhcccCC
Q psy10065 169 VSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKFNQN 214 (215)
Q Consensus 169 vsp~Rr~~lAiwlI~~~ar~~~~r~~ks~~e~LA~EII~Aa~~~g~ 214 (215)
|+|.||++|||+||+++||+ |++++|++|||+|||||++|+|.
T Consensus 86 v~~~Rr~~lAirWi~~~ar~---r~~k~m~~~La~EiidA~~~~g~ 128 (151)
T 1rss_A 86 VSPRRQQSLALRWLVQAANQ---RPERRAAVRIAHELMDAAEGKGG 128 (151)
T ss_dssp CCHHHHHHHHHHHHHHHHTT---SSCSSHHHHHHHHHHHHHTTCSH
T ss_pred cCHHHHHHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHhCCCc
Confidence 99999999999555599996 67899999999999999999985
No 7
>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus} SCOP: a.75.1.1
Probab=100.00 E-value=4.4e-42 Score=283.45 Aligned_cols=119 Identities=32% Similarity=0.410 Sum_probs=112.5
Q ss_pred CccCChhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhcCCccceEEeccCCeeeEEeeec
Q psy10065 90 RKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGENPLQILVTAIINSGPREDSTRIGRAGTVRRQAVDV 169 (215)
Q Consensus 90 ~k~~~piverliN~LM~~g~n~GKK~~A~rIV~~AfeiI~~~t~~nPiqVl~~AI~N~~P~~es~Rig~gG~~yqvPV~v 169 (215)
++++||+|++|||+||++ |||++|++|||+||++|+++|++||++||++||+|++|++|+++++.||.+|||||||
T Consensus 15 p~y~~~lV~kliN~lM~~----GKKs~A~~Iv~~a~~~I~~kt~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqVPv~v 90 (155)
T 1hus_A 15 PIYNSKLVTRLINKIMID----GKKSKAQKILYTAFDIIRERTGKDPMEVFEQALKNVMPVLEVRARRVGGANYQVPVEV 90 (155)
T ss_dssp TTTCCHHHHHHHHHHCCT----TCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHCCSEEEECCEETTEECCEEEEC
T ss_pred CCcCCHHHHHHHHHHHhC----ccHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHhCCCceEEEEeecCCEEEEEeeec
Confidence 678999999999999998 9999999999999999999999999999999999999999998888999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHhcccCCC
Q psy10065 170 SPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKFNQNR 215 (215)
Q Consensus 170 sp~Rr~~lAiwlI~~~ar~~~~r~~ks~~e~LA~EII~Aa~~~g~s 215 (215)
+|.||++|||+||+++|++ |++++|++|||+|||||++|+|.+
T Consensus 91 ~~~Rr~~lAirWi~~~ar~---R~~k~m~~~La~EiidA~~~~g~a 133 (155)
T 1hus_A 91 RPDRRVSLGLRWLVQYARL---RNEKTMEERLANEIMDAANNTGAA 133 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHH---SCSSSHHHHHHHHHHHHHTTCSHH
T ss_pred CHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHhCCCce
Confidence 9999999999555599996 778999999999999999999853
No 8
>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 3izv_K* 3izw_K* 3kc4_G 3or9_G 3ora_G 3uoq_G* 4gaq_G* 4gas_G* 2qal_G* 1p6g_G 1p87_G ...
Probab=100.00 E-value=1.2e-41 Score=286.42 Aligned_cols=129 Identities=27% Similarity=0.333 Sum_probs=116.9
Q ss_pred CCCCccccccc----CccCChhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhcCCccceE
Q psy10065 79 HSAGRYAAKRF----RKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGENPLQILVTAIINSGPREDST 154 (215)
Q Consensus 79 hs~gr~~~krf----~k~~~piverliN~LM~~g~n~GKK~~A~rIV~~AfeiI~~~t~~nPiqVl~~AI~N~~P~~es~ 154 (215)
|++.+...||. ++++||+|++|||+||++ |||++|++|||+||++|+++|++||++||++||+|++|++|++
T Consensus 1 m~rr~~~~kr~~~pdp~y~~~lV~kliN~lM~~----GKKs~A~~Iv~~A~~~I~~kt~~nPl~vl~~AI~Nv~P~veVk 76 (179)
T 3i1m_G 1 MPRRRVIGQRKILPDPKFGSELLAKFVNILMVD----GKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVK 76 (179)
T ss_dssp -CCSCCCCCCCCCCCTTTCCHHHHHHHHHHCCT----TCHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHHHCCSEEEE
T ss_pred CCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHhc----cCHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEE
Confidence 45555566653 678999999999999998 9999999999999999999999999999999999999999988
Q ss_pred EeccCCeeeEEeeecChhHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHhcccCC
Q psy10065 155 RIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKFNQN 214 (215)
Q Consensus 155 Rig~gG~~yqvPV~vsp~Rr~~lAiwlI~~~ar~~~~r~~ks~~e~LA~EII~Aa~~~g~ 214 (215)
++..||.+|||||+|+|.||++|||+||+++|++ |++++|++|||+|||||++|+|.
T Consensus 77 s~rvGG~tyqVPv~V~p~Rr~~lAirWii~~ark---R~~k~m~erLA~ELidAa~~~G~ 133 (179)
T 3i1m_G 77 SRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARK---RGDKSMALRLANELSDAAENKGT 133 (179)
T ss_dssp CCCCSSSCCCEEEECCTTHHHHHHHHHHHHHHTT---CCSSSHHHHHHHHHHHHHTSCSH
T ss_pred EEeeCCEEEEEccccCHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHhCcch
Confidence 7778899999999999999999999545599985 77999999999999999999985
No 9
>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima}
Probab=100.00 E-value=1.5e-41 Score=278.71 Aligned_cols=120 Identities=26% Similarity=0.320 Sum_probs=112.1
Q ss_pred cCccCChhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhcCCccceEEeccCCeeeEEeee
Q psy10065 89 FRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGENPLQILVTAIINSGPREDSTRIGRAGTVRRQAVD 168 (215)
Q Consensus 89 f~k~~~piverliN~LM~~g~n~GKK~~A~rIV~~AfeiI~~~t~~nPiqVl~~AI~N~~P~~es~Rig~gG~~yqvPV~ 168 (215)
-++++||+|++|||+||++ |||++|++|||+||++|+++|++||++||++||+|++|++|+++++.||.+|||||+
T Consensus 8 dp~~~~~lv~kliN~lM~~----GKK~~A~~Iv~~a~~~I~~kt~~nPl~vl~~Ai~Nv~P~~evks~rvGG~~yqvPv~ 83 (149)
T 3gty_S 8 DPVFGDVLVAKLINRVMWD----GKKTIAQKIVYGAFDIIREKTKKDPLEVFRQAVENVKPVLEVRPRRVGGATYQVPIE 83 (149)
T ss_dssp CSSSCCHHHHHHHHHHCBT----TBTTTHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSEEEEEECSSSSCEEEEEE
T ss_pred CCCcCCHHHHHHHHHHHHc----ccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCeEEEEEeeCCEEEEEeee
Confidence 4678999999999999997 999999999999999999999999999999999999999998888888999999999
Q ss_pred cChhHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHhcccCCC
Q psy10065 169 VSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKFNQNR 215 (215)
Q Consensus 169 vsp~Rr~~lAiwlI~~~ar~~~~r~~ks~~e~LA~EII~Aa~~~g~s 215 (215)
|+|.||++|||+||+++|++ |++++|++|||+|||||++|+|.+
T Consensus 84 v~~~rr~~lAirWi~~~ar~---r~~k~m~~~LA~Eli~A~~~~g~a 127 (149)
T 3gty_S 84 VQEPRRTSLALRWIVEAARA---KKGRPMKEKLAEEIIAAYNNTGTA 127 (149)
T ss_dssp CCTHHHHHHHHHHHHHHHHT---CSSSCHHHHHHHHHHHHHTTCSHH
T ss_pred cCHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHhCCchh
Confidence 99999999999555599996 778999999999999999999853
No 10
>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=4.2e-42 Score=283.62 Aligned_cols=128 Identities=27% Similarity=0.334 Sum_probs=117.0
Q ss_pred CCCCccccccc----CccCChhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhcCCccceE
Q psy10065 79 HSAGRYAAKRF----RKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGENPLQILVTAIINSGPREDST 154 (215)
Q Consensus 79 hs~gr~~~krf----~k~~~piverliN~LM~~g~n~GKK~~A~rIV~~AfeiI~~~t~~nPiqVl~~AI~N~~P~~es~ 154 (215)
|++.+...||. +++++++|++|||+||++ |||++|++|||+||++|+++|++||++||++||+|++|++|++
T Consensus 1 m~r~~~~~~r~~~~dp~y~~~lv~kliN~lM~~----GKKs~A~~Iv~~a~~~i~~kt~~nPl~vl~~Ai~Nv~P~~evk 76 (155)
T 3bbn_G 1 MSRRGTVEEKTAKSDPIYRNRLVNMLVNRILKH----GKKSLAYQILYRAVKKIQQKTETNPLSVLRQAIRGVTPDIAVK 76 (155)
T ss_dssp -CCSSCCCCCCCCCCTTTCCSSGGGHHHHSCCT----TCHHHHHHHHSHHHHTTTTTCSSCTTHHHHHHGGGTCCSEEEC
T ss_pred CCCCCCCCCCCCCCCCccCCHHHHHHHHHHHhc----CcHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCCeEEE
Confidence 34555566664 567889999999999998 9999999999999999999999999999999999999999999
Q ss_pred EeccCCeeeEEeeecChhHHHHHHH-HHHHHHHHhhhcCCCCcHHHHHHHHHHHHhcccCC
Q psy10065 155 RIGRAGTVRRQAVDVSPLRRVNQAI-WLLCTGAREAAFRNIKTIAECVADELINAAKFNQN 214 (215)
Q Consensus 155 Rig~gG~~yqvPV~vsp~Rr~~lAi-wlI~~~ar~~~~r~~ks~~e~LA~EII~Aa~~~g~ 214 (215)
+++.||.+|||||+|+|.||++||| ||+ ++|++ |++++|++|||+|||||++|+|+
T Consensus 77 ~~rvGG~tyqVPv~v~~~Rr~~lAirWi~-~~ar~---R~~k~m~~~La~EiidA~~~~g~ 133 (155)
T 3bbn_G 77 ARRVGGSTHQVPIEIGSTQGKALAIRWLL-GAARK---RPGRNMAFKLSSELVDAAKGSGD 133 (155)
T ss_dssp CEEETTEEECCEEECCHHHHHHHHTTHHH-HHHHT---CCSSCHHHHHHHHHHHHHHTCHH
T ss_pred EeccCCeEEEEeeecCHHHHHHHHHHHHH-HHHHh---cCCCCHHHHHHHHHHHHHhCCCc
Confidence 8889999999999999999999999 665 89996 77899999999999999999985
No 11
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=26.73 E-value=67 Score=26.32 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=19.8
Q ss_pred ChhHHHHHHHhhccccccchHHHHHHHHHHHHH
Q psy10065 94 CPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFE 126 (215)
Q Consensus 94 ~piverliN~LM~~g~n~GKK~~A~rIV~~Afe 126 (215)
..++++|...|+. |.+..+..++.++++
T Consensus 3 ~~~~~~l~~al~~-----~d~~~~~~~~~~al~ 30 (215)
T 3ezx_A 3 QEIFDKLRDAIVN-----QNVAGTPELCKEALA 30 (215)
T ss_dssp HHHHHHHHHHHHT-----TCTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh-----CCHHHHHHHHHHHHH
Confidence 4567777777775 777777777777764
No 12
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=21.50 E-value=85 Score=25.56 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhcC
Q psy10065 112 AKKLMAVRIVKHAFEIIHLLTGENPLQILVTAIINSG 148 (215)
Q Consensus 112 GKK~~A~rIV~~AfeiI~~~t~~nPiqVl~~AI~N~~ 148 (215)
|.=..|++|+-.|+. ..-.|.++|..||.|..
T Consensus 108 gnl~kARkILg~AiG-----~~~k~~~~le~a~~nl~ 139 (161)
T 4h7y_A 108 GNVKKSKQLLQKAVE-----RGAVPLEMLEIALRNLN 139 (161)
T ss_dssp TCHHHHHHHHHHHHH-----TTCBCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhc-----cCCCcHHHHHHHHHhhh
Confidence 888999999999988 56779999999999975
Done!