RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10065
(215 letters)
>gnl|CDD|185439 PTZ00091, PTZ00091, 40S ribosomal protein S5; Provisional.
Length = 193
Score = 314 bits (807), Expect = e-111
Identities = 133/171 (77%), Positives = 150/171 (87%)
Query: 44 EIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNS 103
E KLFG+WS DDVQVSD+SL+DYIAV K + F+PH+AGRY KRFRKAQCPIVERL NS
Sbjct: 5 EPKLFGKWSYDDVQVSDLSLKDYIAVTTKASVFVPHTAGRYQKKRFRKAQCPIVERLVNS 64
Query: 104 LMMHGRNNAKKLMAVRIVKHAFEIIHLLTGENPLQILVTAIINSGPREDSTRIGRAGTVR 163
LM HGRNN KKL+AVRIVKHAFEIIHLLT +NPLQ+LV A+ N GPREDSTR+G G VR
Sbjct: 65 LMFHGRNNGKKLLAVRIVKHAFEIIHLLTDKNPLQVLVDAVQNGGPREDSTRVGSGGVVR 124
Query: 164 RQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKFNQN 214
RQAVDVSPLRRVNQAI+L+C GAREAAFRNIKTIAEC+ADE+INA+K + N
Sbjct: 125 RQAVDVSPLRRVNQAIYLICKGAREAAFRNIKTIAECLADEIINASKESSN 175
>gnl|CDD|211618 TIGR01028, S7_S5_E_A, ribosomal protein
S7(archaeal)/S5(eukaryotic). This model describes the
members from the eukaryotic cytosol and the Archaea of
the family that includes ribosomal protein S7 of
bacteria and S5 of eukaryotes. A separate model
describes bacterial and organellar S7 [Protein
synthesis, Ribosomal proteins: synthesis and
modification].
Length = 186
Score = 285 bits (730), Expect = 5e-99
Identities = 108/171 (63%), Positives = 134/171 (78%), Gaps = 3/171 (1%)
Query: 44 EIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNS 103
EIK+FG+WS DDV+V D SL+DYI ++ K ++PH+AGR+A K+FRKA+ PIVERL N
Sbjct: 1 EIKVFGKWSTDDVEVKDPSLKDYINLEPK---YVPHTAGRHAKKQFRKAKVPIVERLINK 57
Query: 104 LMMHGRNNAKKLMAVRIVKHAFEIIHLLTGENPLQILVTAIINSGPREDSTRIGRAGTVR 163
+M GRNN KKL A RIVK AFEII TGENP+Q+LV AI N+GPRED+TRIG G V
Sbjct: 58 VMRSGRNNGKKLKAYRIVKEAFEIIEKRTGENPIQVLVDAIENAGPREDTTRIGYGGIVY 117
Query: 164 RQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKFNQN 214
RQAVD+SPLRRV+QA+ + GAREAAFRN K+IAEC+A+E+I AA +
Sbjct: 118 RQAVDISPLRRVDQALRNIALGAREAAFRNKKSIAECLAEEIILAANGDSK 168
>gnl|CDD|235204 PRK04027, PRK04027, 30S ribosomal protein S7P; Reviewed.
Length = 195
Score = 231 bits (591), Expect = 1e-77
Identities = 87/171 (50%), Positives = 115/171 (67%), Gaps = 3/171 (1%)
Query: 40 AELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVER 99
AE EIKLFG+W ++V+V D SL+ YI + +PH+ GR+A K+F KA+ PIVER
Sbjct: 6 AEPMEIKLFGKWDVEEVEVRDPSLKRYINLTPV---LVPHTGGRHAKKQFGKAEVPIVER 62
Query: 100 LTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGENPLQILVTAIINSGPREDSTRIGRA 159
L N LM RN KK A IVK AFEII T +NP+Q+LV AI N+ PRE++TRI
Sbjct: 63 LINKLMRTERNTGKKQKAYNIVKEAFEIIEKRTKQNPIQVLVDAIENAAPREETTRIKYG 122
Query: 160 GTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAK 210
G +AVDVSP RRV+ A+ + GAR+A+F+N K+I E +A+E+I AA
Sbjct: 123 GISYPKAVDVSPQRRVDLALRFIAEGARQASFKNKKSIEEALAEEIIAAAN 173
>gnl|CDD|223127 COG0049, RpsG, Ribosomal protein S7 [Translation, ribosomal
structure and biogenesis].
Length = 148
Score = 153 bits (389), Expect = 8e-48
Identities = 56/134 (41%), Positives = 74/134 (55%), Gaps = 7/134 (5%)
Query: 77 LPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGENP 136
H+AG+ K IVERL N +M G KK +A +IV AF+II TG+NP
Sbjct: 2 RRHTAGKREVLPDPKYNSVIVERLINKIMRDG----KKSLAEKIVYGAFDIIEKKTGQNP 57
Query: 137 LQILVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKT 196
LQ+ AI N PRE+ G + V+V P RRV A+ + GAR+ RN KT
Sbjct: 58 LQVFEKAIENVKPREEVKSRRVGGATYQVPVEVRPRRRVALALRWIVEGARK---RNEKT 114
Query: 197 IAECVADELINAAK 210
+AE +A+ELI+AA
Sbjct: 115 MAERLANELIDAAN 128
>gnl|CDD|215771 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e. This family
contains ribosomal protein S7 from prokaryotes and S5
from eukaryotes.
Length = 149
Score = 133 bits (336), Expect = 9e-40
Identities = 50/123 (40%), Positives = 69/123 (56%), Gaps = 10/123 (8%)
Query: 88 RFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGENPLQILVTAIINS 147
++ +VE+L N LM G KK +A +IV A EII TG+NPL++LV AI N
Sbjct: 17 KYNS---ALVEKLINKLMKDG----KKSLAEKIVYDALEIIEEKTGKNPLEVLVQAIENV 69
Query: 148 GPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELIN 207
PR + G + V+VSP RRV AI + AR R+ K++AE +A+ELI+
Sbjct: 70 KPRVEVKSRRVGGATYQVPVEVSPERRVALAIRWILEAAR---KRSGKSMAEKLANELID 126
Query: 208 AAK 210
AA
Sbjct: 127 AAN 129
>gnl|CDD|235398 PRK05302, PRK05302, 30S ribosomal protein S7; Validated.
Length = 156
Score = 61.7 bits (151), Expect = 3e-12
Identities = 44/118 (37%), Positives = 67/118 (56%), Gaps = 13/118 (11%)
Query: 96 IVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGENPLQILVTAIINSGPRED--S 153
+V + N LM+ G KK +A +IV A +II TG++PL++ A+ N P + S
Sbjct: 22 LVTKFINKLMLDG----KKSVAEKIVYGALDIIEEKTGKDPLEVFEKALENVKPVVEVKS 77
Query: 154 TRIGRAGTVRRQAVDVSPLRRVNQAI-WLLCTGAREAAFRNIKTIAECVADELINAAK 210
R+G G + V+V P RR A+ WL+ AR+ R KT+AE +A+EL++AA
Sbjct: 78 RRVG--GATYQVPVEVRPERRQALAMRWLV-EAARK---RGEKTMAERLANELLDAAN 129
>gnl|CDD|233238 TIGR01029, rpsG_bact, ribosomal protein S7, bacterial/organelle.
This model describes the bacterial and organellar branch
of the ribosomal protein S7 family (includes prokaroytic
S7 and eukaryotic S5). The eukaryotic and archaeal
branch is described by model TIGR01028 [Protein
synthesis, Ribosomal proteins: synthesis and
modification].
Length = 154
Score = 61.5 bits (150), Expect = 3e-12
Identities = 42/118 (35%), Positives = 63/118 (53%), Gaps = 13/118 (11%)
Query: 96 IVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGENPLQILVTAIINSGPRED--S 153
++ + N +M G KK +A IV AFE I TGE+PL++ A+ N P + S
Sbjct: 20 LLNKFINRVMKDG----KKSLAESIVYKAFERIAKKTGEDPLEVFEQALENVKPLVEVKS 75
Query: 154 TRIGRAGTVRRQAVDVSPLRRVNQAI-WLLCTGAREAAFRNIKTIAECVADELINAAK 210
R+G G + V+V P RR AI WL+ A R K++AE +A+E+++AA
Sbjct: 76 RRVG--GATYQVPVEVRPSRRYALAIRWLI----EAARKRGGKSMAERLANEILDAAN 127
>gnl|CDD|176994 CHL00053, rps7, ribosomal protein S7.
Length = 155
Score = 55.7 bits (135), Expect = 5e-10
Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 13/118 (11%)
Query: 96 IVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGENPLQILVTAIINSGPRED--S 153
+V L N ++ G KK +A RIV A + I T +NPL +L AI N P + +
Sbjct: 22 LVNMLVNRILKSG----KKSLAYRIVYRALKKIQQKTEKNPLSVLRQAIRNVTPDVEVKA 77
Query: 154 TRIGRAGTVRRQAVDVSPLRRVNQAI-WLLCTGAREAAFRNIKTIAECVADELINAAK 210
R+G G+ + +++ R AI WLL +R+ + RN +A ++ EL++AAK
Sbjct: 78 RRVG--GSTYQVPIEIGSTRGKALAIRWLL-KASRKRSGRN---MAFKLSSELVDAAK 129
>gnl|CDD|109652 pfam00604, Flu_PB2, Influenza RNA-dependent RNA polymerase subunit
PB2. PB2 can bind 5' end cap structure of RNA.
Length = 759
Score = 30.6 bits (69), Expect = 0.65
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 126 EIIHLLTGENPLQILVTA-IINSGPREDSTRIGRAGTVRRQAVDVSPL 172
E++HLL GE Q+ + + R+ S I VRR V ++PL
Sbjct: 230 EVLHLLQGECWEQMYTPGGEVRNDDRDQSMIIACRKIVRRATVSINPL 277
>gnl|CDD|203257 pfam05491, RuvB_C, Holliday junction DNA helicase ruvB
C-terminus. The RuvB protein makes up part of the
RuvABC revolvasome which catalyzes the resolution of
Holliday junctions that arise during genetic
recombination and DNA repair. Branch migration is
catalyzed by the RuvB protein that is targeted to the
Holliday junction by the structure specific RuvA
protein. This family consists of the C-terminal region
of the RuvB protein which is thought to be helicase
DNA-binding domain.
Length = 75
Score = 26.6 bits (60), Expect = 2.5
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 28 GGPVGLSSIAA 38
GGPVGL ++AA
Sbjct: 22 GGPVGLDTLAA 32
>gnl|CDD|235579 PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated.
Length = 495
Score = 28.6 bits (65), Expect = 2.7
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 5 IVHVQITMAED 15
I HVQIT+AE
Sbjct: 214 IDHVQITVAET 224
>gnl|CDD|237233 PRK12853, PRK12853, glucose-6-phosphate 1-dehydrogenase;
Provisional.
Length = 482
Score = 27.9 bits (63), Expect = 5.0
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 4 SIVHVQITMAED 15
I HVQIT+AE
Sbjct: 203 HIDHVQITVAET 214
>gnl|CDD|234897 PRK01096, PRK01096, deoxyguanosinetriphosphate
triphosphohydrolase-like protein; Provisional.
Length = 440
Score = 27.6 bits (62), Expect = 5.9
Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 32/113 (28%)
Query: 63 LQDYIAVKEKNAKFLPHSAGRYAAKRFR-KAQCPIVERLTNS----------LMMHGR-- 109
+ I KEK + P + R R R KA RL N+ ++ G
Sbjct: 270 FLELIGDKEKYRQLGPQDSRRQKLARLRGKAI----GRLVNAVAEAFVENYDAILAGTLP 325
Query: 110 ---------------NNAKKLMAVRIVKHAFEIIHLLTGENPLQILVTAIINS 147
AK L +I +H ++ + L+IL+ A + +
Sbjct: 326 GDLIEHCDPDAKRCVQQAKDLAREKIFQHKRKVELEIGAYTILEILLDAFVPA 378
>gnl|CDD|234528 TIGR04264, hyperosmo_Ebh, hyperosmolarity resistance protein Ebh,
N-terminal domain. Staphylococcal protein Ebh
(extracellular matrix-binding protein homolog) is a giant
protein, sometimes over 10,000 amino acids long as
reported. This model describes a non-repetitive
amino-terminal domain of about 2400 amino acids.
Length = 2354
Score = 27.5 bits (61), Expect = 6.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 141 VTAIINSGPREDSTRIGRAGTVR 163
+T + +GP +STRIG TVR
Sbjct: 1540 ITWVNGNGPNINSTRIGVDITVR 1562
>gnl|CDD|223441 COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate
transport and metabolism].
Length = 483
Score = 26.8 bits (60), Expect = 9.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 2 STSIVHVQITMAED 15
I HVQIT+AE
Sbjct: 201 RNYIDHVQITVAET 214
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.132 0.388
Gapped
Lambda K H
0.267 0.0872 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,843,289
Number of extensions: 1004591
Number of successful extensions: 703
Number of sequences better than 10.0: 1
Number of HSP's gapped: 694
Number of HSP's successfully gapped: 19
Length of query: 215
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 122
Effective length of database: 6,812,680
Effective search space: 831146960
Effective search space used: 831146960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.5 bits)