RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10065
         (215 letters)



>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 201

 Score =  210 bits (535), Expect = 6e-70
 Identities = 77/182 (42%), Positives = 108/182 (59%), Gaps = 19/182 (10%)

Query: 45  IKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSL 104
           IK+ GRWS +DV+V D SL+ YI ++    + LPH+ GR+A K F KA   IVERL N +
Sbjct: 1   IKVMGRWSTEDVEVKDPSLKPYINLE---PRLLPHTHGRHAKKHFGKANVHIVERLINKV 57

Query: 105 MMHGRN----------------NAKKLMAVRIVKHAFEIIHLLTGENPLQILVTAIINSG 148
           M  G +                N+KK+ A  +VK AF+II   TG+NP+Q+LV AI N+ 
Sbjct: 58  MRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAA 117

Query: 149 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINA 208
           PRED+T +   G     AVD+SPLRR++ A+  +  GA    +R   + AE +A+E+I A
Sbjct: 118 PREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILA 177

Query: 209 AK 210
           A 
Sbjct: 178 AN 179


>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 139

 Score =  101 bits (252), Expect = 5e-28
 Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 7/116 (6%)

Query: 95  PIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGENPLQILVTAIINSGPREDST 154
            +V RL N +M+ G    KK  A +I+  AF+II   TG++P+++   A+ N  P  +  
Sbjct: 12  KLVTRLINKIMIDG----KKSKAQKILYTAFDIIRERTGKDPMEVFEQALKNVMPVLEVR 67

Query: 155 RIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAK 210
                G   +  V+V P RRV+  +  L   AR    RN KT+ E +A+E+++AA 
Sbjct: 68  ARRVGGANYQVPVEVRPDRRVSLGLRWLVQYAR---LRNEKTMEERLANEIMDAAN 120


>d1rssa_ a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilus
           [TaxId: 274]}
          Length = 145

 Score = 98.7 bits (246), Expect = 4e-27
 Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 7/116 (6%)

Query: 95  PIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGENPLQILVTAIINSGPREDST 154
            +V    N +M  G    KK +A RI   A +II   TG+ PL++   A+ N  PR +  
Sbjct: 10  VLVTAFINKIMRDG----KKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVR 65

Query: 155 RIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAK 210
                G   +  ++VSP R+ + A+  L   A     R  +  A  +A EL++AA+
Sbjct: 66  SRRVGGANYQVPMEVSPRRQQSLALRWLVQAAN---QRPERRAAVRIAHELMDAAE 118


>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli
           [TaxId: 562]}
          Length = 150

 Score = 94.9 bits (236), Expect = 1e-25
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 7/116 (6%)

Query: 95  PIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGENPLQILVTAIINSGPREDST 154
            ++ +  N LM+ G    KK  A  IV  A E +   +G++ L+    A+ N  P  +  
Sbjct: 19  ELLAKFVNILMVDG----KKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVK 74

Query: 155 RIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAK 210
                G+  +  V+V P+RR   A+  +   AR+   R  K++A  +A+EL +AA+
Sbjct: 75  SRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARK---RGDKSMALRLANELSDAAE 127


>d1qo5a_ c.1.10.1 (A:) Fructose-1,6-bisphosphate aldolase {Human
           (Homo sapiens), liver isozyme [TaxId: 9606]}
          Length = 360

 Score = 27.3 bits (60), Expect = 1.5
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 78  PHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKL---MAVRIVKHAFEIIHLLTGE 134
            ++  RYA+   +    PIVE        H   + + +   +   + K   +    L G 
Sbjct: 167 ANALARYASICQQNGLVPIVEPEVIPDGDHDLEHCQYVTEKVLAAVYKALNDHHVYLEGT 226

Query: 135 NPLQILVTAIINSGPREDSTRIGRA 159
                +VTA      +    ++  A
Sbjct: 227 LLKPNMVTAGHACTKKYTPEQVAMA 251


>d1h9aa2 d.81.1.5 (A:182-412,A:427-485) Glucose 6-phosphate
          dehydrogenase {Leuconostoc mesenteroides [TaxId: 1245]}
          Length = 290

 Score = 25.0 bits (54), Expect = 8.4
 Identities = 5/16 (31%), Positives = 9/16 (56%)

Query: 2  STSIVHVQITMAEDWD 17
             I +VQ+T++E   
Sbjct: 23 KDYIKNVQVTLSEVLG 38


>g2gac.1 d.153.1.5 (A:,B:) Glycosylasparaginase
           (aspartylglucosaminidase, AGA) {Flavobacterium
           meningosepticum [TaxId: 238]}
          Length = 275

 Score = 24.6 bits (53), Expect = 9.7
 Identities = 4/32 (12%), Positives = 12/32 (37%)

Query: 105 MMHGRNNAKKLMAVRIVKHAFEIIHLLTGENP 136
           +M    N   +  +  +K+   +   +  + P
Sbjct: 67  IMDENYNIGSVACMEHIKNPISVARAVMEKTP 98


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0553    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 775,545
Number of extensions: 33527
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 8
Length of query: 215
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 133
Effective length of database: 1,281,736
Effective search space: 170470888
Effective search space used: 170470888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)