Query psy10067
Match_columns 124
No_of_seqs 177 out of 512
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 17:02:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10067.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10067hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK04027 30S ribosomal protein 100.0 6.6E-45 1.4E-49 287.8 7.1 93 28-123 5-97 (195)
2 PTZ00091 40S ribosomal protein 100.0 7.1E-45 1.5E-49 287.4 7.1 93 31-123 3-95 (193)
3 TIGR01028 S7_S5_E_A ribosomal 100.0 1.6E-41 3.5E-46 266.7 6.4 88 33-123 1-88 (186)
4 KOG3291|consensus 100.0 8.5E-30 1.8E-34 203.7 4.8 97 27-123 16-112 (208)
5 COG0049 RpsG Ribosomal protein 99.7 1.1E-18 2.4E-23 134.0 4.7 54 66-123 2-55 (148)
6 PF00177 Ribosomal_S7: Ribosom 99.1 5.3E-11 1.1E-15 89.3 4.7 53 66-123 1-55 (148)
7 TIGR01029 rpsG_bact ribosomal 98.9 1.1E-09 2.4E-14 83.4 4.7 38 82-123 17-54 (154)
8 PRK05302 30S ribosomal protein 98.9 2.2E-09 4.7E-14 82.0 4.7 38 82-123 19-56 (156)
9 CHL00053 rps7 ribosomal protei 98.8 8.5E-09 1.8E-13 78.6 4.7 38 82-123 19-56 (155)
10 COG2761 FrnE Predicted dithiol 73.7 2 4.3E-05 35.3 1.6 58 54-112 92-149 (225)
11 COG1709 Predicted transcriptio 39.7 9.5 0.00021 32.0 -0.0 69 35-111 30-99 (241)
12 KOG3324|consensus 36.3 46 0.00099 27.5 3.3 36 84-119 112-147 (206)
13 PHA03351 tegument protein UL16 31.9 21 0.00046 29.3 0.8 31 63-93 131-161 (235)
14 KOG0932|consensus 28.1 39 0.00084 32.3 1.9 27 86-112 399-430 (774)
15 PRK14533 groES co-chaperonin G 24.9 38 0.00082 24.0 1.0 24 34-60 59-82 (91)
16 TIGR03188 histidine_hisI phosp 20.4 1.5E+02 0.0033 20.7 3.3 25 90-118 21-45 (84)
No 1
>PRK04027 30S ribosomal protein S7P; Reviewed
Probab=100.00 E-value=6.6e-45 Score=287.84 Aligned_cols=93 Identities=52% Similarity=0.758 Sum_probs=89.3
Q ss_pred CCCCccccccccccCCCceeecCCcccceeeccccceeeeccCcchhhhhhcccCChhHHHHHHHhhccCccchhHHHHH
Q psy10067 28 PAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAV 107 (124)
Q Consensus 28 ~~~~~eikLFgKW~~~dV~v~D~sL~~YI~l~~~~~~~vPHTaGR~~~k~F~Ka~~~IVERLIN~LM~~grN~GKK~~A~ 107 (124)
.....++|||||||++||+|+||||++||||+| +++|||+|||++|||+||+|+|||||||+||++|||+|||++|+
T Consensus 5 ~~~~~~~~lf~kw~~~~v~~~d~~l~~yi~~~~---~~~pht~gr~~~k~f~k~~~~iVerLiN~lM~~~~n~GKK~~A~ 81 (195)
T PRK04027 5 EAEPMEIKLFGKWDVEEVEVRDPSLKRYINLTP---VLVPHTGGRHAKKQFGKAEVPIVERLINKLMRTERNTGKKQKAY 81 (195)
T ss_pred cccchhhhhhCCCCccceeEcccchHhheeecc---eecCcccccccccCcccccCHHHHHHHHHHhccCccCCcHHHHH
Confidence 345568999999999999999999999999997 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCC
Q psy10067 108 RIVKHAFEIIHLLTGE 123 (124)
Q Consensus 108 ~IV~~AfeII~~kT~~ 123 (124)
+|||+|||||+++|++
T Consensus 82 ~Iv~~AfeiI~~kT~~ 97 (195)
T PRK04027 82 NIVKEAFEIIEKRTKQ 97 (195)
T ss_pred HHHHHHHHHHHHHHCC
Confidence 9999999999999986
No 2
>PTZ00091 40S ribosomal protein S5; Provisional
Probab=100.00 E-value=7.1e-45 Score=287.40 Aligned_cols=93 Identities=76% Similarity=1.185 Sum_probs=90.3
Q ss_pred CccccccccccCCCceeecCCcccceeeccccceeeeccCcchhhhhhcccCChhHHHHHHHhhccCccchhHHHHHHHH
Q psy10067 31 LPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIV 110 (124)
Q Consensus 31 ~~eikLFgKW~~~dV~v~D~sL~~YI~l~~~~~~~vPHTaGR~~~k~F~Ka~~~IVERLIN~LM~~grN~GKK~~A~~IV 110 (124)
..++|||||||++||+|+||||++||+|+++.++++|||+|||++|+|+|++|+|||||||+||++|||+|||++|++||
T Consensus 3 ~~~~~lf~kw~~~~v~~~d~~l~~yi~~~~~~~~~~pht~gr~~~k~f~k~~~~iVerLiN~lM~~grn~GKK~~A~~IV 82 (193)
T PTZ00091 3 ANEPKLFGKWSYDDVQVSDLSLKDYIAVTTKASVFVPHTAGRYQKKRFRKAQCPIVERLVNSLMFHGRNNGKKLLAVRIV 82 (193)
T ss_pred CccchhhCCcCcccCeecCcCHHHHhhcccCCceeeccccchhhcCccCcccCHHHHHHHHHHhccCccCCcHHHHHHHH
Confidence 45789999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q psy10067 111 KHAFEIIHLLTGE 123 (124)
Q Consensus 111 ~~AfeII~~kT~~ 123 (124)
|+|||||+++||+
T Consensus 83 ~~AfeiI~~~t~~ 95 (193)
T PTZ00091 83 KHAFEIIHLLTDK 95 (193)
T ss_pred HHHHHHHHHHHCC
Confidence 9999999999986
No 3
>TIGR01028 S7_S5_E_A ribosomal protein S7(archaeal)/S5(eukaryotic). This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein S7 of bacteria and S5 of eukaryotes. A separate model describes bacterial and organellar S7.
Probab=100.00 E-value=1.6e-41 Score=266.68 Aligned_cols=88 Identities=65% Similarity=0.998 Sum_probs=85.8
Q ss_pred cccccccccCCCceeecCCcccceeeccccceeeeccCcchhhhhhcccCChhHHHHHHHhhccCccchhHHHHHHHHHH
Q psy10067 33 EIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKH 112 (124)
Q Consensus 33 eikLFgKW~~~dV~v~D~sL~~YI~l~~~~~~~vPHTaGR~~~k~F~Ka~~~IVERLIN~LM~~grN~GKK~~A~~IV~~ 112 (124)
++|||||||++||+|+||||++||||++ +++|||+|||++|+|+|++||||+||||.||++|||+|||++|++|||+
T Consensus 1 ~~~lf~kw~~~~v~~~d~~l~~yi~~~~---~~~pht~gr~~~k~f~k~~~~iV~rliN~lM~~g~n~GKK~~A~kIv~~ 77 (186)
T TIGR01028 1 EIKVFGKWSTDDVEVKDPSLKDYINLEP---KYVPHTAGRHAKKQFRKAKVPIVERLINKVMRSGRNNGKKLKAYRIVKE 77 (186)
T ss_pred CccccCCcCCccceecCCCHHhhhhcCc---eeccchhhhhhccccCcccCHHHHHHHHHHhccCcCCCcHHHHHHHHHH
Confidence 4799999999999999999999999997 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q psy10067 113 AFEIIHLLTGE 123 (124)
Q Consensus 113 AfeII~~kT~~ 123 (124)
||+||+.+|++
T Consensus 78 A~~iI~~~t~~ 88 (186)
T TIGR01028 78 AFEIIEKRTGE 88 (186)
T ss_pred HHHHHHHHhCC
Confidence 99999999985
No 4
>KOG3291|consensus
Probab=99.96 E-value=8.5e-30 Score=203.68 Aligned_cols=97 Identities=67% Similarity=0.932 Sum_probs=93.4
Q ss_pred CCCCCccccccccccCCCceeecCCcccceeeccccceeeeccCcchhhhhhcccCChhHHHHHHHhhccCccchhHHHH
Q psy10067 27 APAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMA 106 (124)
Q Consensus 27 ~~~~~~eikLFgKW~~~dV~v~D~sL~~YI~l~~~~~~~vPHTaGR~~~k~F~Ka~~~IVERLIN~LM~~grN~GKK~~A 106 (124)
.+...++++||++|++++++++|+||.|||+++|++..++||++|||+.++|.||.|+++++|+|+||++|+|+|||.+|
T Consensus 16 ~~~~~~~~~~f~~~s~~~~~~~d~sl~dy~~~~~k~~~~~~~~~~~~~~~~~~ka~~~~~e~l~~~l~n~~~~~GKK~~a 95 (208)
T KOG3291|consen 16 RVAETGEIKLFEKWSEDSVEFSDISLQDYIALKPKDLTQLPHSAGRYAKKRFRKAQCPIVERLINKLMNHIMKNGKKLLA 95 (208)
T ss_pred hhcccchhHHHHHhhcccccccccccccccccccccccccccccchhhhhhhhhccccHHHHHHHHHHHHHHhcccHHHH
Confidence 35677799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCC
Q psy10067 107 VRIVKHAFEIIHLLTGE 123 (124)
Q Consensus 107 ~~IV~~AfeII~~kT~~ 123 (124)
.+||++||+||+.+|++
T Consensus 96 ~~Iv~~aleiI~~~t~~ 112 (208)
T KOG3291|consen 96 RRIVKHALEIIKRLTER 112 (208)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999999975
No 5
>COG0049 RpsG Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1.1e-18 Score=133.97 Aligned_cols=54 Identities=41% Similarity=0.474 Sum_probs=52.9
Q ss_pred eeccCcchhhhhhcccCChhHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHhCC
Q psy10067 66 LPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123 (124)
Q Consensus 66 vPHTaGR~~~k~F~Ka~~~IVERLIN~LM~~grN~GKK~~A~~IV~~AfeII~~kT~~ 123 (124)
.||++||+...+|.|.+++||+||||+||++ |||++|++|||+|||||+++||+
T Consensus 2 r~~~~~kr~~~~dpk~~~~iv~rliN~iM~~----GKK~~A~~Ivy~Af~ii~~kTg~ 55 (148)
T COG0049 2 RRHTAGKREVLPDPKYNSVIVERLINKIMRD----GKKSLAEKIVYGAFDIIEKKTGQ 55 (148)
T ss_pred CCCCCCcccCCCCcccccHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHHHCC
Confidence 6999999999999999999999999999998 99999999999999999999997
No 6
>PF00177 Ribosomal_S7: Ribosomal protein S7p/S5e; InterPro: IPR023798 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S7 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S7 is known to bind directly to part of the 3'end of 16S ribosomal RNA. It belongs to a family of ribosomal proteins which have been grouped on the basis of sequence similarities [, , ]. This entry represents the S7 structural domain, which consists of a bundle of six helices and an extended beta hairpin between helices 3 and 4, with two or more RNA-binding sites on its surface [].; PDB: 3IZ6_F 3V28_G 2WRN_G 2HHH_G 2V46_G 3KNL_G 2UUC_G 2Y16_G 2Y0W_G 2J02_G ....
Probab=99.14 E-value=5.3e-11 Score=89.28 Aligned_cols=53 Identities=38% Similarity=0.482 Sum_probs=48.1
Q ss_pred eeccCcchhhh--hhcccCChhHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHhCC
Q psy10067 66 LPHSAGRYAAK--RFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123 (124)
Q Consensus 66 vPHTaGR~~~k--~F~Ka~~~IVERLIN~LM~~grN~GKK~~A~~IV~~AfeII~~kT~~ 123 (124)
+||+ |||+++ ...+-++++|++|||.||.+ |||++|++||++||++|+.+|++
T Consensus 1 m~~~-~~~~k~~~~~~~~~~~lv~k~in~lmk~----GkK~~A~~i~~~al~~i~~~~~~ 55 (148)
T PF00177_consen 1 MSRK-GRYKKKKIPDPKFNDPLVKKFINRLMKD----GKKSKAEKIVYKALEIIKKKTNK 55 (148)
T ss_dssp SSTS-SS-SSSS-SBTTTCGHHHHHHHHHHHST----TBHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCC-CCCCCCCCCCcccccHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHhhcccCC
Confidence 4899 999999 66678899999999999999 99999999999999999998875
No 7
>TIGR01029 rpsG_bact ribosomal protein S7, bacterial/organelle. This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028.
Probab=98.93 E-value=1.1e-09 Score=83.42 Aligned_cols=38 Identities=37% Similarity=0.454 Sum_probs=36.3
Q ss_pred CChhHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHhCC
Q psy10067 82 QCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123 (124)
Q Consensus 82 ~~~IVERLIN~LM~~grN~GKK~~A~~IV~~AfeII~~kT~~ 123 (124)
++++|++|||.||++ |||++|++|||+||++|+.+|++
T Consensus 17 ~~~lv~~lin~lM~~----GKK~~A~kI~~~al~~i~~~~~~ 54 (154)
T TIGR01029 17 GSVLLNKFINRVMKD----GKKSLAESIVYKAFERIAKKTGE 54 (154)
T ss_pred CCHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHHHcCC
Confidence 499999999999999 99999999999999999999875
No 8
>PRK05302 30S ribosomal protein S7; Validated
Probab=98.88 E-value=2.2e-09 Score=82.01 Aligned_cols=38 Identities=37% Similarity=0.503 Sum_probs=36.1
Q ss_pred CChhHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHhCC
Q psy10067 82 QCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123 (124)
Q Consensus 82 ~~~IVERLIN~LM~~grN~GKK~~A~~IV~~AfeII~~kT~~ 123 (124)
++|+|++|||.||++ |||++|++||++||++|+.+|++
T Consensus 19 ~~~lv~~lin~lmk~----GKK~~A~kI~~~al~~I~~~~~~ 56 (156)
T PRK05302 19 GSVLVTKFINKLMLD----GKKSVAEKIVYGALDIIEEKTGK 56 (156)
T ss_pred CCHHHHHHHHHHhhc----ccHHHHHHHHHHHHHHHHHHcCC
Confidence 489999999999999 99999999999999999999875
No 9
>CHL00053 rps7 ribosomal protein S7
Probab=98.77 E-value=8.5e-09 Score=78.59 Aligned_cols=38 Identities=32% Similarity=0.380 Sum_probs=36.3
Q ss_pred CChhHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHhCC
Q psy10067 82 QCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123 (124)
Q Consensus 82 ~~~IVERLIN~LM~~grN~GKK~~A~~IV~~AfeII~~kT~~ 123 (124)
++++|++|||.||.+ |||++|++||++||++|+.+|++
T Consensus 19 ~~~lv~~lin~lm~~----GKK~~A~kIv~~al~~i~~~~~~ 56 (155)
T CHL00053 19 RNRLVNMLVNRILKS----GKKSLAYRIVYRALKKIQQKTEK 56 (155)
T ss_pred CcHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHHHcCC
Confidence 499999999999999 99999999999999999999875
No 10
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=73.70 E-value=2 Score=35.31 Aligned_cols=58 Identities=19% Similarity=0.177 Sum_probs=49.3
Q ss_pred cceeeccccceeeeccCcchhhhhhcccCChhHHHHHHHhhccCccchhHHHHHHHHHH
Q psy10067 54 DYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKH 112 (124)
Q Consensus 54 ~YI~l~~~~~~~vPHTaGR~~~k~F~Ka~~~IVERLIN~LM~~grN~GKK~~A~~IV~~ 112 (124)
++.++.+....+.+|-+-+|++.+.+ .+..++++|-..++.+|+|-|.-.+...|..+
T Consensus 92 ~f~~~~~~~nt~~Ah~l~~~A~~~G~-~~~~~~~~lf~AyF~eg~nI~D~dVL~diA~~ 149 (225)
T COG2761 92 NFDAIVPAPNTLDAHRLIKAAELQGK-AQDRFLEALFEAYFEEGRNIGDEDVLADIAEE 149 (225)
T ss_pred chhhccCCCchHHHHHHHHHHHHhCc-hHHHHHHHHHHHHhccCCCCCcHHHHHHHHHH
Confidence 45555455567999999999999999 99999999999999999999988887777654
No 11
>COG1709 Predicted transcriptional regulator [Transcription]
Probab=39.73 E-value=9.5 Score=32.00 Aligned_cols=69 Identities=17% Similarity=0.315 Sum_probs=50.5
Q ss_pred cccccccCCCceeecCCcccceeeccccceeeeccCcchhhhhhcccCChhHHHHHHHhh-ccCccchhHHHHHHHHH
Q psy10067 35 KLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLM-MHGRNNAKKLMAVRIVK 111 (124)
Q Consensus 35 kLFgKW~~~dV~v~D~sL~~YI~l~~~~~~~vPHTaGR~~~k~F~Ka~~~IVERLIN~LM-~~grN~GKK~~A~~IV~ 111 (124)
+-.-||- +.-+|+...|.+|+++.|. ++-=.-.||- .-.+..+|-||++.|. -+++.-||+..++.=+-
T Consensus 30 e~lrKWR-~~F~vSQ~elA~~l~vSpS--VISDYE~GRR-----k~Pg~~~vkk~V~ALIeID~eRGg~vik~l~~~l 99 (241)
T COG1709 30 ETLRKWR-EIFNVSQTELARELGVSPS--VISDYESGRR-----KSPGIAFVKKFVEALIEIDEERGGKVIKALARVL 99 (241)
T ss_pred HHHHHHH-HHhCccHHHHHHHhCCCcc--eeehhhccCc-----cCccHHHHHHHHHHHHhhhHhhcchHHHHHHHHh
Confidence 3356887 4778888899999999983 6655556652 2278889999999987 45555699888876543
No 12
>KOG3324|consensus
Probab=36.25 E-value=46 Score=27.45 Aligned_cols=36 Identities=22% Similarity=0.159 Sum_probs=31.8
Q ss_pred hhHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHH
Q psy10067 84 PIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHL 119 (124)
Q Consensus 84 ~IVERLIN~LM~~grN~GKK~~A~~IV~~AfeII~~ 119 (124)
+-..|.+|+.|++|+--|...=+.-.+|.||+++=.
T Consensus 112 lr~nrILN~~t~~G~~~gN~lG~laL~YsaiesgI~ 147 (206)
T KOG3324|consen 112 LRLNRILNSVTRRGRFWGNTLGSLALMYSAIESGIE 147 (206)
T ss_pred hhHHHHhhhccccccccccchhHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999998644
No 13
>PHA03351 tegument protein UL16; Provisional
Probab=31.86 E-value=21 Score=29.30 Aligned_cols=31 Identities=35% Similarity=0.466 Sum_probs=25.2
Q ss_pred ceeeeccCcchhhhhhcccCChhHHHHHHHh
Q psy10067 63 AKFLPHSAGRYAAKRFRKAQCPIVERLTNSL 93 (124)
Q Consensus 63 ~~~vPHTaGR~~~k~F~Ka~~~IVERLIN~L 93 (124)
..+--||+|||.--|-...-..||||+--+|
T Consensus 131 rii~n~t~grydc~rcengt~eiier~yvkl 161 (235)
T PHA03351 131 RIINNHTAGRYDCFRCENGTLEIIERLYVKL 161 (235)
T ss_pred hhhccccccceeeEEecCCchhHHHHHHHHH
Confidence 4566799999998888788889999997543
No 14
>KOG0932|consensus
Probab=28.09 E-value=39 Score=32.30 Aligned_cols=27 Identities=37% Similarity=0.592 Sum_probs=22.3
Q ss_pred HHHHHHHhh-----ccCccchhHHHHHHHHHH
Q psy10067 86 VERLTNSLM-----MHGRNNAKKLMAVRIVKH 112 (124)
Q Consensus 86 VERLIN~LM-----~~grN~GKK~~A~~IV~~ 112 (124)
|--|.|.|| .||.|-|||..|...+-+
T Consensus 399 vHtLTCAlmLLNTDLHGhniGKkMtcqdFI~N 430 (774)
T KOG0932|consen 399 VHTLTCALMLLNTDLHGHNIGKKMTCQDFITN 430 (774)
T ss_pred hhHHHHHHHHHccccccccccccccHHHHHHH
Confidence 455999999 599999999999876643
No 15
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=24.87 E-value=38 Score=24.00 Aligned_cols=24 Identities=21% Similarity=0.653 Sum_probs=20.0
Q ss_pred ccccccccCCCceeecCCcccceeecc
Q psy10067 34 IKLFGRWSCDDVQVSDMSLQDYIAVKE 60 (124)
Q Consensus 34 ikLFgKW~~~dV~v~D~sL~~YI~l~~ 60 (124)
.-||.+|+-.+|++.| .+|+-++.
T Consensus 59 ~Vl~~~y~g~ev~~~~---~~y~iv~e 82 (91)
T PRK14533 59 KVIFSKYAGTEIKIDD---EDYIIIDV 82 (91)
T ss_pred EEEEccCCCeEEEECC---EEEEEEEh
Confidence 4589999999999987 88887764
No 16
>TIGR03188 histidine_hisI phosphoribosyl-ATP pyrophosphohydrolase. This enzyme, phosphoribosyl-ATP pyrophosphohydrolase, catalyses the second step in the histidine biosynthesis pathway. It often occurs as a fusion protein. This model a somewhat narrower scope than Pfam model pfam01503, as some paralogs that appear to be functionally distinct are excluded from this model.
Probab=20.43 E-value=1.5e+02 Score=20.73 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=16.3
Q ss_pred HHHhhccCccchhHHHHHHHHHHHHHHHH
Q psy10067 90 TNSLMMHGRNNAKKLMAVRIVKHAFEIIH 118 (124)
Q Consensus 90 IN~LM~~grN~GKK~~A~~IV~~AfeII~ 118 (124)
.++|+.. |...++.+|.++|.|.|-
T Consensus 21 T~~L~~~----G~~ki~kKvgEEa~E~ii 45 (84)
T TIGR03188 21 TARLFAK----GLDKILKKVGEEAVEVVI 45 (84)
T ss_pred HHHHHhC----cHHHHHHHHHHHHHHHHH
Confidence 4556666 666777777777777653
Done!