Query psy10067
Match_columns 124
No_of_seqs 177 out of 512
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 17:03:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10067.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10067hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zkq_g 40S ribosomal protein S 100.0 4.7E-44 1.6E-48 283.1 0.0 94 30-123 13-106 (204)
2 2xzm_G Ribosomal protein S7 co 100.0 2.8E-42 9.6E-47 272.2 6.4 96 28-123 5-101 (200)
3 3u5c_F RP14, S2, YS8, 40S ribo 100.0 1.2E-41 4.2E-46 272.8 6.9 91 31-123 37-127 (225)
4 1iqv_A Ribosomal protein S7; R 100.0 1.2E-37 4E-42 248.9 6.9 89 32-123 16-120 (218)
5 1rss_A Ribosomal protein S7; R 99.2 5.2E-12 1.8E-16 95.5 4.8 40 80-123 12-51 (151)
6 1hus_A Ribosomal protein S7; R 99.2 7.1E-12 2.4E-16 95.1 4.8 40 80-123 16-55 (155)
7 3r8n_G 30S ribosomal protein S 99.2 6.7E-12 2.3E-16 94.9 4.2 40 80-123 16-55 (151)
8 3gty_S TF, 30S ribosomal prote 99.2 8.5E-12 2.9E-16 94.1 3.5 40 80-123 10-49 (149)
9 3i1m_G 30S ribosomal protein S 99.2 1.8E-11 6E-16 95.2 4.7 40 80-123 17-56 (179)
10 3bbn_G Ribosomal protein S7; s 99.1 1.7E-11 5.9E-16 93.1 0.3 40 80-123 17-56 (155)
11 2rre_A NVL2, putative uncharac 24.3 90 0.0031 21.0 3.8 38 86-123 36-76 (78)
No 1
>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protei complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=4.7e-44 Score=283.12 Aligned_cols=94 Identities=87% Similarity=1.342 Sum_probs=89.5
Q ss_pred CCccccccccccCCCceeecCCcccceeeccccceeeeccCcchhhhhhcccCChhHHHHHHHhhccCccchhHHHHHHH
Q psy10067 30 ELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRI 109 (124)
Q Consensus 30 ~~~eikLFgKW~~~dV~v~D~sL~~YI~l~~~~~~~vPHTaGR~~~k~F~Ka~~~IVERLIN~LM~~grN~GKK~~A~~I 109 (124)
+.+++|||||||++||+|+||||++||+|+.+.++|+|||+|||++|||+|++|+||+||||+||++|||+|||++|++|
T Consensus 13 ~~~~~~lf~kw~~~~v~v~d~~l~~yi~~~~~~~~~~pht~gr~~~k~f~k~~~~lV~kliN~lM~~g~n~GKKs~A~~I 92 (204)
T 2zkq_g 13 ETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRI 92 (204)
Confidence 34489999999999999999999999999766679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCC
Q psy10067 110 VKHAFEIIHLLTGE 123 (124)
Q Consensus 110 V~~AfeII~~kT~~ 123 (124)
||+||+||+++|++
T Consensus 93 vy~A~~~I~~kt~~ 106 (204)
T 2zkq_g 93 VKHAFEIIHLLTGE 106 (204)
Confidence 99999999999975
No 2
>2xzm_G Ribosomal protein S7 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_G 3j0o_T 3j0l_T
Probab=100.00 E-value=2.8e-42 Score=272.19 Aligned_cols=96 Identities=53% Similarity=0.977 Sum_probs=89.2
Q ss_pred CCCCccccccccccCCCceeecCCcccceeec-cccceeeeccCcchhhhhhcccCChhHHHHHHHhhccCccchhHHHH
Q psy10067 28 PAELPEIKLFGRWSCDDVQVSDMSLQDYIAVK-EKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMA 106 (124)
Q Consensus 28 ~~~~~eikLFgKW~~~dV~v~D~sL~~YI~l~-~~~~~~vPHTaGR~~~k~F~Ka~~~IVERLIN~LM~~grN~GKK~~A 106 (124)
..+..++|||||||++||+|+||||++||+|+ .++++++|||+|||++|||+|++++||+||||+||++|||+|||++|
T Consensus 5 ~~~~~~~~lf~kw~~~~v~v~d~~l~~yi~~~~~k~~~~~pht~gr~~~k~f~k~~~~lV~kliN~lM~~g~n~GKKs~A 84 (200)
T 2xzm_G 5 KGFATQPKLFGKWNYDEVKIQDPCFQNYIACTTTKSQVFVPHTAGRYQVKKFRKTQCPIVERLIGTLMFHGRNAGKKALC 84 (200)
T ss_dssp ----CCCCGGGSCCGGGCCCCSSSGGGSCSTTCTTTCCSSSCCCCCCSSSSSGGGGSCHHHHHHHHHSCSTTTCCCHHHH
T ss_pred cccchhccccCCcCCCCeeecccchhhceeeccccCceecCCCcccccccccccccChHHHHHHHHHhcCCCCCCCHHHH
Confidence 34566899999999999999999999999995 67789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCC
Q psy10067 107 VRIVKHAFEIIHLLTGE 123 (124)
Q Consensus 107 ~~IV~~AfeII~~kT~~ 123 (124)
++|||+||+||+++|++
T Consensus 85 ~~Iv~~A~~~I~~kt~~ 101 (200)
T 2xzm_G 85 IKVVKNAFEIIHLVTGR 101 (200)
T ss_dssp HHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999999999999985
No 3
>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F
Probab=100.00 E-value=1.2e-41 Score=272.77 Aligned_cols=91 Identities=64% Similarity=1.064 Sum_probs=87.5
Q ss_pred CccccccccccCCCceeecCCcccceeeccccceeeeccCcchhhhhhcccCChhHHHHHHHhhccCccchhHHHHHHHH
Q psy10067 31 LPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIV 110 (124)
Q Consensus 31 ~~eikLFgKW~~~dV~v~D~sL~~YI~l~~~~~~~vPHTaGR~~~k~F~Ka~~~IVERLIN~LM~~grN~GKK~~A~~IV 110 (124)
..++|||||||++||+|+||||++||||+ +++|+|||+|||++|||+|++||||+||||.||++|+|+|||++|++||
T Consensus 37 ~~~~~lf~kw~~~~v~v~d~~l~~yi~~~--~~~~~pht~gr~~~krf~K~~~piv~rliN~LM~~~~~~GKKs~A~~Iv 114 (225)
T 3u5c_F 37 QTEIKLFNKWSFEEVEVKDASLVDYVQVR--QPIFVAHTAGRYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRII 114 (225)
T ss_dssp HHSSCCSSSCCCSSCCCSSTTTBTTBCCC--SCCSSSCCCCCCSSSTTGGGGSCHHHHHHHHHSCSGGGSSCHHHHHHHH
T ss_pred chhhhhcCCCCCcceEEeccchhheeecc--CCceecccCCCccccCCCCCCCcHHHHHHHHHHhcCccCCcHHHHHHHH
Confidence 55899999999999999999999999998 2489999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q psy10067 111 KHAFEIIHLLTGE 123 (124)
Q Consensus 111 ~~AfeII~~kT~~ 123 (124)
|+||++|+++|++
T Consensus 115 y~AfeiI~~kT~~ 127 (225)
T 3u5c_F 115 KHTLDIINVLTDQ 127 (225)
T ss_dssp HHHHHHHHHTTCS
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999985
No 4
>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP: a.75.1.1
Probab=100.00 E-value=1.2e-37 Score=248.92 Aligned_cols=89 Identities=51% Similarity=0.768 Sum_probs=62.7
Q ss_pred ccccccccccCCCceeecCCcccceeeccccceeeeccCcchhhhhhcccCChhHHHHHHHhhc---------------c
Q psy10067 32 PEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMM---------------H 96 (124)
Q Consensus 32 ~eikLFgKW~~~dV~v~D~sL~~YI~l~~~~~~~vPHTaGR~~~k~F~Ka~~~IVERLIN~LM~---------------~ 96 (124)
+++|||||||++||+|+||||++||+++| +++|||+|||++|+|+|++++||+||||+||+ +
T Consensus 16 ~~~~lf~kws~~dv~v~dp~l~~yi~~~p---~~~Pht~gr~~~k~f~k~~~~iV~rliN~lM~~~~~~~~~~~~~~~~~ 92 (218)
T 1iqv_A 16 HEIKVMGRWSTEDVEVKDPSLKPYINLEP---RLLPHTHGRHAKKHFGKANVHIVERLINKVMRSGGSHYKVAGHFMRRE 92 (218)
T ss_dssp --CCBTTTBCCTTCCCCCTTTGGGSBCSC---C------------------CBHHHHHHHHHHTTCCC------------
T ss_pred ccccccccccCCCCeecCCchhhhcccCC---ccCCCcchHHHhhhcccccChHHHHHHhHhhhcccccccccccccccc
Confidence 48999999999999999999999999988 79999999999999999999999999999999 9
Q ss_pred Cc-cchhHHHHHHHHHHHHHHHHHHhCC
Q psy10067 97 GR-NNAKKLMAVRIVKHAFEIIHLLTGE 123 (124)
Q Consensus 97 gr-N~GKK~~A~~IV~~AfeII~~kT~~ 123 (124)
|| |+|||++|++|||+||+||+++|++
T Consensus 93 ~r~n~GKK~~A~~Iv~~Af~iI~~~t~~ 120 (218)
T 1iqv_A 93 HRSLNSKKVRAYEVVKEAFKIIEKRTGK 120 (218)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 99 9999999999999999999999985
No 5
>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G* 1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G 1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G 2zm6_G 3fic_G* 3mr8_G ...
Probab=99.24 E-value=5.2e-12 Score=95.49 Aligned_cols=40 Identities=33% Similarity=0.342 Sum_probs=38.0
Q ss_pred ccCChhHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHhCC
Q psy10067 80 KAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123 (124)
Q Consensus 80 Ka~~~IVERLIN~LM~~grN~GKK~~A~~IV~~AfeII~~kT~~ 123 (124)
+-+|+||+||||.||++ |||++|++|||+||++|+++|++
T Consensus 12 ~~~~~lv~kliN~lM~~----GKKs~A~~Iv~~a~~~i~~kt~~ 51 (151)
T 1rss_A 12 VYGDVLVTAFINKIMRD----GKKNLAARIFYDACKIIQEKTGQ 51 (151)
T ss_dssp TTCCHHHHHHHHHHCCT----TCHHHHHHHHHHHHHHHHHHHCS
T ss_pred CcCCHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHHHcCC
Confidence 45799999999999999 99999999999999999999985
No 6
>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus} SCOP: a.75.1.1
Probab=99.22 E-value=7.1e-12 Score=95.11 Aligned_cols=40 Identities=38% Similarity=0.504 Sum_probs=37.9
Q ss_pred ccCChhHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHhCC
Q psy10067 80 KAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123 (124)
Q Consensus 80 Ka~~~IVERLIN~LM~~grN~GKK~~A~~IV~~AfeII~~kT~~ 123 (124)
+-+++||++|||.||++ |||++|++|||+||++|+++|++
T Consensus 16 ~y~~~lV~kliN~lM~~----GKKs~A~~Iv~~a~~~I~~kt~~ 55 (155)
T 1hus_A 16 IYNSKLVTRLINKIMID----GKKSKAQKILYTAFDIIRERTGK 55 (155)
T ss_dssp TTCCHHHHHHHHHHCCT----TCHHHHHHHHHHHHHHHHHHHCS
T ss_pred CcCCHHHHHHHHHHHhC----ccHHHHHHHHHHHHHHHHHHcCC
Confidence 45799999999999999 99999999999999999999985
No 7
>3r8n_G 30S ribosomal protein S7; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_G* 3j18_G 3oaq_G 3ofa_G 3ofx_G 3ofo_G 3r8o_G 4gd1_G 4gd2_G 3sfs_G* 3ofp_G 3fih_G* 2wwl_G 3oar_G 3ofb_G 3ofy_G 4a2i_G 2gy9_G 2gyb_G
Probab=99.21 E-value=6.7e-12 Score=94.87 Aligned_cols=40 Identities=30% Similarity=0.381 Sum_probs=37.8
Q ss_pred ccCChhHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHhCC
Q psy10067 80 KAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123 (124)
Q Consensus 80 Ka~~~IVERLIN~LM~~grN~GKK~~A~~IV~~AfeII~~kT~~ 123 (124)
+-+|++|++|||.||++ |||++|++|||+||++|+++|++
T Consensus 16 ~~~~~lv~kliN~lM~~----GKK~~A~~Iv~~a~~~I~~kt~~ 55 (151)
T 3r8n_G 16 KFGSELLAKFVNILMVD----GKKSTAESIVYSALETLAQRSGK 55 (151)
T ss_dssp TTCCHHHHHHHHHHCCT----TCHHHHHHHHHHHHHHHHTTTCS
T ss_pred CcCCHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHHHhCC
Confidence 45799999999999999 99999999999999999999985
No 8
>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima}
Probab=99.18 E-value=8.5e-12 Score=94.05 Aligned_cols=40 Identities=35% Similarity=0.380 Sum_probs=37.6
Q ss_pred ccCChhHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHhCC
Q psy10067 80 KAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123 (124)
Q Consensus 80 Ka~~~IVERLIN~LM~~grN~GKK~~A~~IV~~AfeII~~kT~~ 123 (124)
+-++++|+||||.||++ |||++|++|||+||++|+++|++
T Consensus 10 ~~~~~lv~kliN~lM~~----GKK~~A~~Iv~~a~~~I~~kt~~ 49 (149)
T 3gty_S 10 VFGDVLVAKLINRVMWD----GKKTIAQKIVYGAFDIIREKTKK 49 (149)
T ss_dssp SSCCHHHHHHHHHHCBT----TBTTTHHHHHHHHHHHHHHTTSS
T ss_pred CcCCHHHHHHHHHHHHc----ccHHHHHHHHHHHHHHHHHHcCC
Confidence 44799999999999998 99999999999999999999985
No 9
>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 3izv_K* 3izw_K* 3kc4_G 3or9_G 3ora_G 3uoq_G* 4gaq_G* 4gas_G* 2qal_G* 1p6g_G 1p87_G ...
Probab=99.17 E-value=1.8e-11 Score=95.17 Aligned_cols=40 Identities=30% Similarity=0.381 Sum_probs=37.9
Q ss_pred ccCChhHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHhCC
Q psy10067 80 KAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123 (124)
Q Consensus 80 Ka~~~IVERLIN~LM~~grN~GKK~~A~~IV~~AfeII~~kT~~ 123 (124)
+-+|++|+||||.||++ |||++|++|||+||++|+++|++
T Consensus 17 ~y~~~lV~kliN~lM~~----GKKs~A~~Iv~~A~~~I~~kt~~ 56 (179)
T 3i1m_G 17 KFGSELLAKFVNILMVD----GKKSTAESIVYSALETLAQRSGK 56 (179)
T ss_dssp TTCCHHHHHHHHHHCCT----TCHHHHHHHHHHHHHHHHHHHCS
T ss_pred CcCCHHHHHHHHHHHhc----cCHHHHHHHHHHHHHHHHHHhCC
Confidence 45799999999999999 99999999999999999999985
No 10
>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=99.06 E-value=1.7e-11 Score=93.06 Aligned_cols=40 Identities=28% Similarity=0.311 Sum_probs=37.3
Q ss_pred ccCChhHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHhCC
Q psy10067 80 KAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123 (124)
Q Consensus 80 Ka~~~IVERLIN~LM~~grN~GKK~~A~~IV~~AfeII~~kT~~ 123 (124)
+-+++||++|||.||++ |||++|++|||+||++|+++|++
T Consensus 17 ~y~~~lv~kliN~lM~~----GKKs~A~~Iv~~a~~~i~~kt~~ 56 (155)
T 3bbn_G 17 IYRNRLVNMLVNRILKH----GKKSLAYQILYRAVKKIQQKTET 56 (155)
T ss_dssp TTCCSSGGGHHHHSCCT----TCHHHHHHHHSHHHHTTTTTCSS
T ss_pred ccCCHHHHHHHHHHHhc----CcHHHHHHHHHHHHHHHHHHcCC
Confidence 34789999999999999 99999999999999999999975
No 11
>2rre_A NVL2, putative uncharacterized protein; nucleolar localization signal, RNA binding, alternatively SP domain, nuclear protein; NMR {Mus musculus}
Probab=24.32 E-value=90 Score=21.03 Aligned_cols=38 Identities=21% Similarity=0.072 Sum_probs=25.6
Q ss_pred HHHHHHHhhccCc--cchhHHHHH-HHHHHHHHHHHHHhCC
Q psy10067 86 VERLTNSLMMHGR--NNAKKLMAV-RIVKHAFEIIHLLTGE 123 (124)
Q Consensus 86 VERLIN~LM~~gr--N~GKK~~A~-~IV~~AfeII~~kT~~ 123 (124)
|+-+.+.|.+.=+ ++.||..|- ..|+.||++|...||.
T Consensus 36 ~~~ma~~Lq~~Y~~eY~Rrk~~~Fr~~Veka~~~I~~~~~~ 76 (78)
T 2rre_A 36 TGILASDLQRLYSVDYGRRKRNAFRIQVEKVFSIISSEKEL 76 (78)
T ss_dssp HHHHHHHHHHHTTTTTCSSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHHccC
Confidence 4445566665433 455666665 4699999999998874
Done!