RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10067
(124 letters)
>gnl|CDD|185439 PTZ00091, PTZ00091, 40S ribosomal protein S5; Provisional.
Length = 193
Score = 170 bits (433), Expect = 3e-55
Identities = 71/91 (78%), Positives = 79/91 (86%)
Query: 33 EIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNS 92
E KLFG+WS DDVQVSD+SL+DYIAV K + F+PH+AGRY KRFRKAQCPIVERL NS
Sbjct: 5 EPKLFGKWSYDDVQVSDLSLKDYIAVTTKASVFVPHTAGRYQKKRFRKAQCPIVERLVNS 64
Query: 93 LMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
LM HGRNN KKL+AVRIVKHAFEIIHLLT +
Sbjct: 65 LMFHGRNNGKKLLAVRIVKHAFEIIHLLTDK 95
>gnl|CDD|211618 TIGR01028, S7_S5_E_A, ribosomal protein
S7(archaeal)/S5(eukaryotic). This model describes the
members from the eukaryotic cytosol and the Archaea of
the family that includes ribosomal protein S7 of
bacteria and S5 of eukaryotes. A separate model
describes bacterial and organellar S7 [Protein
synthesis, Ribosomal proteins: synthesis and
modification].
Length = 186
Score = 154 bits (391), Expect = 4e-49
Identities = 57/91 (62%), Positives = 70/91 (76%), Gaps = 3/91 (3%)
Query: 33 EIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNS 92
EIK+FG+WS DDV+V D SL+DYI ++ K ++PH+AGR+A K+FRKA+ PIVERL N
Sbjct: 1 EIKVFGKWSTDDVEVKDPSLKDYINLEPK---YVPHTAGRHAKKQFRKAKVPIVERLINK 57
Query: 93 LMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
+M GRNN KKL A RIVK AFEII TGE
Sbjct: 58 VMRSGRNNGKKLKAYRIVKEAFEIIEKRTGE 88
>gnl|CDD|235204 PRK04027, PRK04027, 30S ribosomal protein S7P; Reviewed.
Length = 195
Score = 125 bits (315), Expect = 2e-37
Identities = 48/95 (50%), Positives = 60/95 (63%), Gaps = 3/95 (3%)
Query: 29 AELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVER 88
AE EIKLFG+W ++V+V D SL+ YI + +PH+ GR+A K+F KA+ PIVER
Sbjct: 6 AEPMEIKLFGKWDVEEVEVRDPSLKRYINLTPV---LVPHTGGRHAKKQFGKAEVPIVER 62
Query: 89 LTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
L N LM RN KK A IVK AFEII T +
Sbjct: 63 LINKLMRTERNTGKKQKAYNIVKEAFEIIEKRTKQ 97
>gnl|CDD|223127 COG0049, RpsG, Ribosomal protein S7 [Translation, ribosomal
structure and biogenesis].
Length = 148
Score = 71.5 bits (176), Expect = 4e-17
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 66 LPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
H+AG+ K IVERL N +M G KK +A +IV AF+II TG+
Sbjct: 2 RRHTAGKREVLPDPKYNSVIVERLINKIMRDG----KKSLAEKIVYGAFDIIEKKTGQ 55
>gnl|CDD|215771 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e. This family
contains ribosomal protein S7 from prokaryotes and S5
from eukaryotes.
Length = 149
Score = 52.2 bits (126), Expect = 1e-09
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 77 RFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
++ +VE+L N LM G KK +A +IV A EII TG+
Sbjct: 17 KYNS---ALVEKLINKLMKDG----KKSLAEKIVYDALEIIEEKTGK 56
>gnl|CDD|235398 PRK05302, PRK05302, 30S ribosomal protein S7; Validated.
Length = 156
Score = 31.6 bits (73), Expect = 0.044
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 85 IVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
+V + N LM+ G KK +A +IV A +II TG+
Sbjct: 22 LVTKFINKLMLDG----KKSVAEKIVYGALDIIEEKTGK 56
>gnl|CDD|233238 TIGR01029, rpsG_bact, ribosomal protein S7, bacterial/organelle.
This model describes the bacterial and organellar branch
of the ribosomal protein S7 family (includes prokaroytic
S7 and eukaryotic S5). The eukaryotic and archaeal
branch is described by model TIGR01028 [Protein
synthesis, Ribosomal proteins: synthesis and
modification].
Length = 154
Score = 31.1 bits (71), Expect = 0.087
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 85 IVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
++ + N +M G KK +A IV AFE I TGE
Sbjct: 20 LLNKFINRVMKDG----KKSLAESIVYKAFERIAKKTGE 54
>gnl|CDD|203257 pfam05491, RuvB_C, Holliday junction DNA helicase ruvB
C-terminus. The RuvB protein makes up part of the
RuvABC revolvasome which catalyzes the resolution of
Holliday junctions that arise during genetic
recombination and DNA repair. Branch migration is
catalyzed by the RuvB protein that is targeted to the
Holliday junction by the structure specific RuvA
protein. This family consists of the C-terminal region
of the RuvB protein which is thought to be helicase
DNA-binding domain.
Length = 75
Score = 27.0 bits (61), Expect = 0.97
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 17 GGPVGLSSIAA 27
GGPVGL ++AA
Sbjct: 22 GGPVGLDTLAA 32
>gnl|CDD|234619 PRK00080, ruvB, Holliday junction DNA helicase RuvB; Reviewed.
Length = 328
Score = 26.6 bits (60), Expect = 3.1
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 17 GGPVGLSSIAA 27
GGPVGL ++AA
Sbjct: 274 GGPVGLDTLAA 284
>gnl|CDD|176994 CHL00053, rps7, ribosomal protein S7.
Length = 155
Score = 26.4 bits (59), Expect = 3.5
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 85 IVERLTNSLMMHGRNNAKKLMAVRIVKHAFEII 117
+V L N ++ G KK +A RIV A + I
Sbjct: 22 LVNMLVNRILKSG----KKSLAYRIVYRALKKI 50
>gnl|CDD|178283 PLN02679, PLN02679, hydrolase, alpha/beta fold family protein.
Length = 360
Score = 26.0 bits (57), Expect = 6.3
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 6 DADPAYPSESTGGPVGLSSIAAPAELPEIKLF 37
D DP P + GPVG + P++LP + L+
Sbjct: 301 DQDPFTPLD---GPVGKYFSSLPSQLPNVTLY 329
>gnl|CDD|225355 COG2761, FrnE, Predicted dithiol-disulfide isomerase involved in
polyketide biosynthesis [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 225
Score = 25.8 bits (57), Expect = 6.8
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 65 FLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRN 99
H + A + KAQ +E L + GRN
Sbjct: 103 LDAHRLIKAAELQG-KAQDRFLEALFEAYFEEGRN 136
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.397
Gapped
Lambda K H
0.267 0.0872 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,301,567
Number of extensions: 530145
Number of successful extensions: 397
Number of sequences better than 10.0: 1
Number of HSP's gapped: 392
Number of HSP's successfully gapped: 15
Length of query: 124
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 39
Effective length of database: 7,167,512
Effective search space: 279532968
Effective search space used: 279532968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (23.9 bits)