RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10067
         (124 letters)



>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 201

 Score =  130 bits (329), Expect = 3e-40
 Identities = 44/106 (41%), Positives = 60/106 (56%), Gaps = 19/106 (17%)

Query: 34  IKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSL 93
           IK+ GRWS +DV+V D SL+ YI ++    + LPH+ GR+A K F KA   IVERL N +
Sbjct: 1   IKVMGRWSTEDVEVKDPSLKPYINLE---PRLLPHTHGRHAKKHFGKANVHIVERLINKV 57

Query: 94  MMHGRN----------------NAKKLMAVRIVKHAFEIIHLLTGE 123
           M  G +                N+KK+ A  +VK AF+II   TG+
Sbjct: 58  MRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGK 103


>d1rssa_ a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilus
           [TaxId: 274]}
          Length = 145

 Score = 41.3 bits (97), Expect = 3e-06
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%)

Query: 84  PIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLT 121
            +V    N +M  G    KK +A RI   A +II   T
Sbjct: 10  VLVTAFINKIMRDG----KKNLAARIFYDACKIIQEKT 43


>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 139

 Score = 41.4 bits (97), Expect = 3e-06
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)

Query: 84  PIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGEV 124
            +V RL N +M+ G    KK  A +I+  AF+II   TG+ 
Sbjct: 12  KLVTRLINKIMIDG----KKSKAQKILYTAFDIIRERTGKD 48


>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli
           [TaxId: 562]}
          Length = 150

 Score = 41.4 bits (97), Expect = 4e-06
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 84  PIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
            ++ +  N LM+ G    KK  A  IV  A E +   +G+
Sbjct: 19  ELLAKFVNILMVDG----KKSTAESIVYSALETLAQRSGK 54


>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA
           polymerases {Archaeon Thermococcus gorgonarius [TaxId:
           71997]}
          Length = 347

 Score = 23.6 bits (50), Expect = 9.5
 Identities = 10/71 (14%), Positives = 24/71 (33%)

Query: 32  PEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTN 91
           P I++F + + +     D + + YI    K+   +       A +     +    E++  
Sbjct: 14  PVIRIFKKENGEFKIDYDRNFEPYIYALLKDDSAIEDVKKITAERHGTTVRVVRAEKVKK 73

Query: 92  SLMMHGRNNAK 102
             +       K
Sbjct: 74  KFLGRPIEVWK 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0553    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 468,234
Number of extensions: 18628
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 7
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)