BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10068
(157 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|D4A208|SRGP2_RAT SLIT-ROBO Rho GTPase-activating protein 2 OS=Rattus norvegicus
GN=Srgap2 PE=1 SV=1
Length = 1071
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 48/71 (67%)
Query: 2 DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQK 61
+IR QL EQ++CLD + E + ++ +LQD+FRK+AE+E+DYS++L+KLA + + K
Sbjct: 23 EIRAQLTEQMKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKLAERFLAKTRSTK 82
Query: 62 QNELDNNVNSL 72
+ + N L
Sbjct: 83 DQQFKKDQNVL 93
>sp|O75044|SRGP2_HUMAN SLIT-ROBO Rho GTPase-activating protein 2 OS=Homo sapiens
GN=SRGAP2 PE=1 SV=2
Length = 1071
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 48/71 (67%)
Query: 2 DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQK 61
+IR QL EQ++CLD + E + ++ +LQD+FRK+AE+E+DYS++L+KLA + + K
Sbjct: 23 EIRAQLTEQMKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKLAERFLAKTRSTK 82
Query: 62 QNELDNNVNSL 72
+ + N L
Sbjct: 83 DQQFKKDQNVL 93
>sp|Q91Z67|SRGP2_MOUSE SLIT-ROBO Rho GTPase-activating protein 2 OS=Mus musculus
GN=Srgap2 PE=1 SV=2
Length = 1071
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 48/71 (67%)
Query: 2 DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQK 61
+IR QL EQ++CLD + E + ++ +LQD+FRK+AE+E+DYS++L+KLA + + K
Sbjct: 23 EIRAQLTEQMKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKLAERFLAKTRSTK 82
Query: 62 QNELDNNVNSL 72
+ + N L
Sbjct: 83 DQQFKKDQNVL 93
>sp|P0DJJ0|SRG2C_HUMAN SLIT-ROBO Rho GTPase-activating protein 2C OS=Homo sapiens
GN=SRGAP2C PE=1 SV=1
Length = 459
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 48/72 (66%)
Query: 2 DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQK 61
+IR QL EQ++CLD + E + ++ +LQD+FRK+AE+E+DYS++L+KLA + + K
Sbjct: 23 EIRAQLTEQMKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKLAEHFLAKTRSTK 82
Query: 62 QNELDNNVNSLG 73
+ + N L
Sbjct: 83 DQQFKKDQNVLS 94
>sp|B0S6J3|SRGP2_DANRE SLIT-ROBO Rho GTPase-activating protein 2 OS=Danio rerio
GN=srgap2 PE=2 SV=1
Length = 1100
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 41/49 (83%)
Query: 2 DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLA 50
+IR QL EQL+CLD + E + ++ +LQD+FRK+AE+E+DYS++L+KLA
Sbjct: 23 EIRAQLVEQLKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKLA 71
>sp|P98171|RHG04_HUMAN Rho GTPase-activating protein 4 OS=Homo sapiens GN=ARHGAP4 PE=1
SV=2
Length = 946
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 40/49 (81%)
Query: 2 DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLA 50
++R QL+EQLRCL+L+ E + ++ EL ++ R+RAEVEL+YS+ L+KLA
Sbjct: 23 EMRWQLSEQLRCLELQGELRRELLQELAEFMRRRAEVELEYSRGLEKLA 71
>sp|Q812A2|SRGP3_MOUSE SLIT-ROBO Rho GTPase-activating protein 3 OS=Mus musculus
GN=Srgap3 PE=1 SV=1
Length = 1099
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 41/49 (83%)
Query: 2 DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLA 50
+IR QL EQ +CL+ + E++ ++ +LQ++FR++AE+EL+YS+SL+KLA
Sbjct: 23 EIRTQLVEQFKCLEQQSESRLQLLQDLQEFFRRKAEIELEYSRSLEKLA 71
>sp|O43295|SRGP3_HUMAN SLIT-ROBO Rho GTPase-activating protein 3 OS=Homo sapiens
GN=SRGAP3 PE=1 SV=3
Length = 1099
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 41/49 (83%)
Query: 2 DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLA 50
+IR QL EQ +CL+ + E++ ++ +LQ++FR++AE+EL+YS+SL+KLA
Sbjct: 23 EIRTQLVEQFKCLEQQSESRLQLLQDLQEFFRRKAEIELEYSRSLEKLA 71
>sp|Q7Z6B7|SRGP1_HUMAN SLIT-ROBO Rho GTPase-activating protein 1 OS=Homo sapiens
GN=SRGAP1 PE=1 SV=1
Length = 1085
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 44/63 (69%)
Query: 2 DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQK 61
+IR QL EQ +CL+ + E + ++ +LQD+FRK+AE+E +YS++L+KLA + + K
Sbjct: 23 EIRAQLVEQQKCLEQQTEMRVQLLQDLQDFFRKKAEIETEYSRNLEKLAERFMAKTRSTK 82
Query: 62 QNE 64
++
Sbjct: 83 DHQ 85
>sp|Q91Z69|SRGP1_MOUSE SLIT-ROBO Rho GTPase-activating protein 1 OS=Mus musculus
GN=Srgap1 PE=1 SV=2
Length = 1062
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 44/63 (69%)
Query: 2 DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQK 61
+IR QL EQ +CL+ + E + ++ +LQD+FRK+AE+E +YS++L+KLA + + K
Sbjct: 23 EIRAQLVEQQKCLEQQTEMRVQLLQDLQDFFRKKAEIETEYSRNLEKLAERFMAKTRSTK 82
Query: 62 QNE 64
++
Sbjct: 83 DHQ 85
>sp|Q6PFY1|FCSD1_MOUSE FCH and double SH3 domains protein 1 OS=Mus musculus GN=Fchsd1
PE=2 SV=1
Length = 688
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 2 DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQK 61
+++L+ EQL L R + + ++ +++ Y ++RA +E +Y ++L KLA L+ + Q+
Sbjct: 13 EVKLRFLEQLSILQTRQQREADLLEDIRSYSKQRAAIEREYGQALQKLAGPF-LKREGQR 71
Query: 62 QNELDN 67
E D+
Sbjct: 72 SGEADS 77
>sp|Q7PYU6|ZGPAT_ANOGA Zinc finger CCCH-type with G patch domain-containing protein
OS=Anopheles gambiae GN=AGAP002111 PE=3 SV=4
Length = 543
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 9/73 (12%)
Query: 40 LDYSKSLDKLARSLQLRHKEQKQNELDNNVNSLG--YQYEVEDLSMKS-------TSGKA 90
L Y + L+++A++LQL E +++EL+ + L + VE L+ S T+G+A
Sbjct: 11 LQYKEQLEQIAQALQLTRDETERSELNKLKSDLIELLELTVESLAATSDDDDAPDTAGRA 70
Query: 91 SPPEPNNNNDDEF 103
P +N DDEF
Sbjct: 71 PPATADNPIDDEF 83
>sp|Q99973|TEP1_HUMAN Telomerase protein component 1 OS=Homo sapiens GN=TEP1 PE=1 SV=2
Length = 2627
Score = 33.5 bits (75), Expect = 0.53, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 49 LARSLQLRHKEQKQNELDNNVNSLGYQYEVEDLSMKSTSGKA-SPPEPNNNNDDEFQDGV 107
L R K+ + ++ + SLG + EVEDL++K TSG + S PEP ++ E + +
Sbjct: 189 LGRWFDSEEKKGAETQMPSYSLSLGEEEEVEDLAVKLTSGDSESHPEPTDHVLQEKKMAL 248
Query: 108 LNL 110
L+L
Sbjct: 249 LSL 251
>sp|Q86WN1|FCSD1_HUMAN FCH and double SH3 domains protein 1 OS=Homo sapiens GN=FCHSD1
PE=2 SV=1
Length = 690
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 2 DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQK 61
+++L+ EQL L + + ++ +++ Y ++RA +E +Y ++L KLA L+ + +
Sbjct: 13 EVKLRFLEQLSILQTWQQREADLLEDIRSYSKQRAAIEREYGQALQKLAGPF-LKREGHR 71
Query: 62 QNELDN 67
E+D+
Sbjct: 72 SGEMDS 77
>sp|D3ZYR1|FCHO2_RAT FCH domain only protein 2 OS=Rattus norvegicus GN=Fcho2 PE=1 SV=1
Length = 809
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 27 ELQDYFRKRAEVELDYSKSLDKLARS 52
EL D+ R+RA +E YS+S+ KLA+S
Sbjct: 34 ELADFVRERATIEEAYSRSMTKLAKS 59
>sp|Q3UQN2|FCHO2_MOUSE FCH domain only protein 2 OS=Mus musculus GN=Fcho2 PE=1 SV=1
Length = 809
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 27 ELQDYFRKRAEVELDYSKSLDKLARS 52
EL D+ R+RA +E YS+S+ KLA+S
Sbjct: 34 ELADFVRERATIEEAYSRSMTKLAKS 59
>sp|Q5R807|FCHO2_PONAB FCH domain only protein 2 OS=Pongo abelii GN=FCHO2 PE=2 SV=1
Length = 810
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 27 ELQDYFRKRAEVELDYSKSLDKLARS 52
EL D+ R+RA +E YS+S+ KLA+S
Sbjct: 34 ELADFVRERATIEEAYSRSMTKLAKS 59
>sp|Q0JRZ9|FCHO2_HUMAN FCH domain only protein 2 OS=Homo sapiens GN=FCHO2 PE=1 SV=2
Length = 810
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 27 ELQDYFRKRAEVELDYSKSLDKLARS 52
EL D+ R+RA +E YS+S+ KLA+S
Sbjct: 34 ELADFVRERATIEEAYSRSMTKLAKS 59
>sp|Q502I9|FCHO2_DANRE FCH domain only protein 2 OS=Danio rerio GN=fcho2 PE=2 SV=1
Length = 848
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 13/60 (21%)
Query: 27 ELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVEDLSMKST 86
EL D+ R+RA +E YS+S+ KLA++ +N + LG V D+ +ST
Sbjct: 34 ELSDFIRERATIEEAYSRSMTKLAKT-------------ASNFSQLGTFAPVWDVFKQST 80
>sp|E7FBF7|FCHO1_DANRE FCH domain only protein 1 OS=Danio rerio GN=fcho1 PE=1 SV=2
Length = 897
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 27 ELQDYFRKRAEVELDYSKSLDKLAR 51
EL ++ R+RA +E YSKS+ KLA+
Sbjct: 32 ELAEFVRERAAIEETYSKSMSKLAK 56
>sp|O22267|CKI1_ARATH Histidine kinase CKI1 OS=Arabidopsis thaliana GN=CKI1 PE=1 SV=1
Length = 1122
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 38 VELDYSKSLDKLARSLQLRHKEQKQ-------NELDNNVNSLGYQYEVEDLSMKSTSGKA 90
V Y K + K +S+ ++KE+ N + NN N++ + +EV+D +GK
Sbjct: 552 VLASYPKGVSKFVKSMFCKNKEESSTYETEISNSIRNNANTMEFVFEVDD------TGKG 605
Query: 91 SPPE 94
P E
Sbjct: 606 IPME 609
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.125 0.335
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,339,015
Number of Sequences: 539616
Number of extensions: 2206433
Number of successful extensions: 8138
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 141
Number of HSP's that attempted gapping in prelim test: 8030
Number of HSP's gapped (non-prelim): 249
length of query: 157
length of database: 191,569,459
effective HSP length: 108
effective length of query: 49
effective length of database: 133,290,931
effective search space: 6531255619
effective search space used: 6531255619
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 56 (26.2 bits)