RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10068
(157 letters)
>gnl|CDD|153340 cd07656, F-BAR_srGAP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase
Activating Proteins. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. Slit-Robo GTPase Activating Proteins
(srGAPs) are Rho GAPs that interact with Robo1, the
transmembrane receptor of Slit proteins. Slit proteins
are secreted proteins that control axon guidance and
the migration of neurons and leukocytes. Vertebrates
contain three isoforms of srGAPs, all of which are
expressed during embryonic and early development in the
nervous system but with different localization and
timing. srGAPs contain an N-terminal F-BAR domain, a
Rho GAP domain, and a C-terminal SH3 domain. F-BAR
domains form banana-shaped dimers with a
positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 241
Score = 83.5 bits (207), Expect = 2e-20
Identities = 35/66 (53%), Positives = 49/66 (74%)
Query: 6 QLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNEL 65
QL+EQL+CLDLR E Q ++ +LQDYFR+RAE+EL+YS+SL+KLA +HK +K
Sbjct: 2 QLSEQLKCLDLRTEAQVQLLADLQDYFRRRAEIELEYSRSLEKLADRFSSKHKNEKSKRE 61
Query: 66 DNNVNS 71
D ++ S
Sbjct: 62 DWSLLS 67
>gnl|CDD|153366 cd07682, F-BAR_srGAP2, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase
Activating Protein 2. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. Slit-Robo GTPase Activating Proteins
(srGAPs) are Rho GAPs that interact with Robo1, the
transmembrane receptor of Slit proteins. Slit proteins
are secreted proteins that control axon guidance and
the migration of neurons and leukocytes. Vertebrates
contain three isoforms of srGAPs. srGAP2 is expressed
in zones of neuronal differentiation. It plays a role
in the regeneration of neurons and axons. srGAP2
contains an N-terminal F-BAR domain, a Rho GAP domain,
and a C-terminal SH3 domain. F-BAR domains form
banana-shaped dimers with a positively-charged concave
surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 263
Score = 53.2 bits (127), Expect = 4e-09
Identities = 28/67 (41%), Positives = 45/67 (67%)
Query: 6 QLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNEL 65
QL EQL+CLD + E + ++ +LQD+FRK+AE+E+DYS++L+KLA + + K +
Sbjct: 2 QLVEQLKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKLAERFLAKTRSTKDQQF 61
Query: 66 DNNVNSL 72
+ N L
Sbjct: 62 KKDQNVL 68
>gnl|CDD|153368 cd07684, F-BAR_srGAP3, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase
Activating Protein 3. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. Slit-Robo GTPase Activating Proteins
(srGAPs) are Rho GAPs that interact with Robo1, the
transmembrane receptor of Slit proteins. Slit proteins
are secreted proteins that control axon guidance and
the migration of neurons and leukocytes. Vertebrates
contain three isoforms of srGAPs. srGAP3, also called
MEGAP (MEntal disorder associated GTPase-Activating
Protein), is a Rho GAP with activity towards Rac1 and
Cdc42. It impacts cell migration by regulating actin
and microtubule cytoskeletal dynamics. The association
between srGAP3 haploinsufficiency and mental
retardation is under debate. srGAP3 contains an
N-terminal F-BAR domain, a Rho GAP domain, and a
C-terminal SH3 domain. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long
tubules.
Length = 253
Score = 47.8 bits (113), Expect = 3e-07
Identities = 28/97 (28%), Positives = 59/97 (60%), Gaps = 3/97 (3%)
Query: 6 QLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNEL 65
QL EQ +CL+ + E++ ++ +LQ++FR++AE+EL+YS+SL+KLA + + ++++
Sbjct: 2 QLVEQFKCLEQQSESRLQLLQDLQEFFRRKAEIELEYSRSLEKLAERFSSKIRTSREHQF 61
Query: 66 ---DNNVNSLGYQYEVEDLSMKSTSGKASPPEPNNNN 99
++ + Y V + + + + A+ + NNN
Sbjct: 62 KKDQQLLSPVNCWYLVLEQTRRESRDHATLNDIFNNN 98
>gnl|CDD|153367 cd07683, F-BAR_srGAP1, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase
Activating Protein 1. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. Slit-Robo GTPase Activating Proteins
(srGAPs) are Rho GAPs that interact with Robo1, the
transmembrane receptor of Slit proteins. Slit proteins
are secreted proteins that control axon guidance and
the migration of neurons and leukocytes. Vertebrates
contain three isoforms of srGAPs. srGAP1, also called
Rho GTPase-Activating Protein 13 (ARHGAP13), is a
Cdc42- and RhoA-specific GAP and is expressed later in
the development of CNS (central nervous system)
tissues. It is an important downstream signaling
molecule of Robo1. srGAP1 contains an N-terminal F-BAR
domain, a Rho GAP domain, and a C-terminal SH3 domain.
F-BAR domains form banana-shaped dimers with a
positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 253
Score = 45.4 bits (107), Expect = 2e-06
Identities = 23/59 (38%), Positives = 41/59 (69%)
Query: 6 QLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNE 64
QL EQ +CL+ + E + ++ +LQD+FRK+AE+E +YS++L+KLA + + K ++
Sbjct: 2 QLVEQQKCLEQQTEMRVQLLQDLQDFFRKKAEIESEYSRNLEKLAERFMAKTRSTKDHQ 60
>gnl|CDD|216021 pfam00611, FCH, Fes/CIP4, and EFC/F-BAR homology domain.
Alignment extended from. Highly alpha-helical. The
cytosolic endocytic adaptor proteins in fungi carry
this domain at the N-terminus; several of these have
been referred to as muniscin proteins. These N-terminal
BAR, N-BAR, and EFC/F-BAR domains are found in proteins
that regulate membrane trafficking events by inducing
membrane tubulation. The domain dimerises into a curved
structure that binds to liposomes and either senses or
induces the curvature of the membrane bilayer to cause
biophysical changes to the shape of the bilayer; it
also thereby recruits other trafficking factors, such
as the GTPase dynamin. Most EFC/F-BAR domain-family
members localise to actin-rich structures.
Length = 91
Score = 42.3 bits (100), Expect = 5e-06
Identities = 16/58 (27%), Positives = 32/58 (55%)
Query: 1 MDIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHK 58
+L++ + L R++ ++ EL + R+RAE+E +Y+K L KLA+ + +
Sbjct: 1 DSFWSELDDGFKVLLKRLKQGIKLLEELAKFLRERAEIEKEYAKKLRKLAKKYLKKKE 58
>gnl|CDD|214492 smart00055, FCH, Fes/CIP4 homology domain. Alignment extended
from original report. Highly alpha-helical. Also known
as the RAEYL motif or the S. pombe Cdc15 N-terminal
domain.
Length = 87
Score = 33.1 bits (76), Expect = 0.012
Identities = 15/62 (24%), Positives = 35/62 (56%)
Query: 1 MDIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQ 60
M +L++ L R++ ++ +L+ + R+RA++E +Y+K L KL++ L+ +
Sbjct: 1 MGFWSELDDGFEALLSRLKNGLRLLEDLKKFMRERAKIEEEYAKKLQKLSKKLRAVRDTE 60
Query: 61 KQ 62
+
Sbjct: 61 PE 62
>gnl|CDD|153335 cd07651, F-BAR_PombeCdc15_like, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces
pombe Cdc15, and similar proteins. F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. This subfamily is composed of
Schizosaccharomyces pombe Cdc15 and Imp2, and similar
proteins. These proteins contain an N-terminal F-BAR
domain and a C-terminal SH3 domain. S. pombe Cdc15 and
Imp2 play both distinct and overlapping roles in the
maintenance and strengthening of the contractile ring
at the division site, which is required in cell
division. Cdc15 is a component of the actomyosin ring
and is required in normal cytokinesis. Imp2 colocalizes
with the medial ring during septation and is required
for normal septation. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long
tubules.
Length = 236
Score = 33.0 bits (76), Expect = 0.036
Identities = 12/36 (33%), Positives = 25/36 (69%)
Query: 17 RMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARS 52
R++ + EL+ ++++RA +E +Y+K L+KL+R
Sbjct: 13 RIKDSLRTLEELRSFYKERASIEEEYAKRLEKLSRK 48
>gnl|CDD|153334 cd07650, F-BAR_Syp1p_like, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein.
F-BAR domains are dimerization modules that bind and
bend membranes and are found in proteins involved in
membrane dynamics and actin reorganization. Syp1p is
associated with septins, a family of GTP-binding
proteins that serve as elements of septin filaments,
which are required for cell morphogenesis and division.
Syp1p regulates cell-cycle dependent septin
cytoskeletal dynamics in yeast. It contains an
N-terminal F-BAR domain and a C-terminal domain of
unknown function named SAFF which is also present in
FCH domain Only (FCHO) proteins and endophilin
interacting protein 1. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long
tubules.
Length = 228
Score = 33.1 bits (76), Expect = 0.042
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 5 LQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQL 55
L E L +R+ V EL D+ ++R +E Y + L KLAR +
Sbjct: 1 LSPYEATEILRIRLSQIKLVNTELADWLQERRRLERQYVQGLRKLARRNEP 51
>gnl|CDD|153336 cd07652, F-BAR_Rgd1, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae
Rho GTPase activating protein Rgd1 and similar
proteins. F-BAR domains are dimerization modules that
bind and bend membranes and are found in proteins
involved in membrane dynamics and actin reorganization.
Saccharomyces cerevisiae Rgd1 is a GTPase activating
protein (GAP) with activity towards Rho3p and Rho4p,
which are involved in bud growth and cytokinesis,
respectively. At low pH, S. cerevisiae Rgd1 is required
for cell survival and the activation of the protein
kinase C pathway, which is important in cell integrity
and the maintenance of cell shape. It contains an
N-terminal F-BAR domain and a C-terminal Rho GAP
domain. The F-BAR domain of S. cerevisiae Rgd1 binds to
phosphoinositides and plays an important role in the
localization of the protein to the bud tip/neck during
the cell cycle. F-BAR domains form banana-shaped dimers
with a positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 234
Score = 32.3 bits (74), Expect = 0.059
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 27 ELQDYFRKRAEVELDYSKSLDKLARSLQ--LRHKEQKQNELDNNVNSL 72
E + +KRA +E ++++ L KLAR+ + + KQ N +S
Sbjct: 23 EFATFLKKRAAIEEEHARGLKKLARTTLDTYKRPDHKQGSFSNAYHSS 70
>gnl|CDD|153294 cd07610, FCH_F-BAR, The Extended FES-CIP4 Homology (FCH) or F-BAR
(FCH and Bin/Amphiphysin/Rvs) domain, a dimerization
module that binds and bends membranes. F-BAR domains
are dimerization modules that bind and bend membranes
and are found in proteins involved in membrane dynamics
and actin reorganization. F-BAR domain containing
proteins, also known as Pombe Cdc15 homology (PCH)
family proteins, include Fes and Fer tyrosine kinases,
PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and
srGAPs. Many members also contain an SH3 domain and
play roles in endocytosis. F-BAR domains form
banana-shaped dimers with a positively-charged concave
surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules. These tubules have diameters
larger than those observed with N-BARs. The F-BAR
domains of some members such as NOSTRIN and Rgd1 are
important for the subcellular localization of the
protein.
Length = 191
Score = 31.2 bits (71), Expect = 0.17
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 13 CLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQ 54
L+ R E ++ +L+++ +KRA +E +Y+K+L KLA+
Sbjct: 4 LLEKRTELGLDLLKDLREFLKKRAAIEEEYAKNLQKLAKKFS 45
>gnl|CDD|153332 cd07648, F-BAR_FCHO, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of FCH domain Only
proteins. F-BAR domains are dimerization modules that
bind and bend membranes and are found in proteins
involved in membrane dynamics and actin reorganization.
Proteins in this group have been named FCH domain Only
(FCHO) proteins. Vertebrates have two members, FCHO1
and FCHO2. These proteins contain an F-BAR domain and a
C-terminal domain of unknown function named SAFF which
is also present in endophilin interacting protein 1.
F-BAR domains form banana-shaped dimers with a
positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 261
Score = 31.2 bits (71), Expect = 0.17
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 27 ELQDYFRKRAEVELDYSKSLDKLARS 52
EL D+ R+RA +E YSK+L+KLA+
Sbjct: 23 ELADFLRERATIEETYSKALNKLAKQ 48
>gnl|CDD|153338 cd07654, F-BAR_FCHSD, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of FCH and double SH3
domains proteins (FCHSD). F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. This subfamily is composed of FCH
and double SH3 domain (FCHSD) proteins, so named as
they contain an N-terminal F-BAR domain and two SH3
domains at the C-terminus. Vertebrates harbor two
subfamily members, FCHSD1 and FCHSD2, which have been
characterized only in silico. Their biological function
is still unknown. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long
tubules.
Length = 264
Score = 30.6 bits (69), Expect = 0.31
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 9 EQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLR 56
EQL L + +T+ ++ +++ Y +K+A +E +Y ++L KLA R
Sbjct: 5 EQLSKLQAKHQTECDLLEDIRTYSQKKAAIEREYGQALQKLASQFLKR 52
>gnl|CDD|153357 cd07673, F-BAR_FCHO2, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of FCH domain Only 2
protein. F-BAR domains are dimerization modules that
bind and bend membranes and are found in proteins
involved in membrane dynamics and actin reorganization.
The specific function of FCH domain Only 2 (FCHO2) is
still unknown. It contains an N-terminal F-BAR domain
and a C-terminal domain of unknown function named SAFF
which is also present in FCHO1 and endophilin
interacting protein 1. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long
tubules.
Length = 269
Score = 29.3 bits (65), Expect = 0.72
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 27 ELQDYFRKRAEVELDYSKSLDKLARS 52
EL D+ R+RA +E YS+S+ KLA+S
Sbjct: 30 ELSDFIRERATIEEAYSRSMTKLAKS 55
>gnl|CDD|153358 cd07674, F-BAR_FCHO1, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of FCH domain Only 1
protein. F-BAR domains are dimerization modules that
bind and bend membranes and are found in proteins
involved in membrane dynamics and actin reorganization.
FCH domain Only 1 (FCHO1) may be involved in
clathrin-coated vesicle formation. It contains an
N-terminal F-BAR domain and a C-terminal domain of
unknown function named SAFF which is also present in
FCHO2 and endophilin interacting protein 1. F-BAR
domains form banana-shaped dimers with a
positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 261
Score = 29.1 bits (65), Expect = 0.86
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 27 ELQDYFRKRAEVELDYSKSLDKLAR 51
EL D+ R+RA +E YSKS+ KL++
Sbjct: 23 ELADFVRERAAIEETYSKSMSKLSK 47
>gnl|CDD|235097 PRK02999, PRK02999, malate synthase G; Provisional.
Length = 726
Score = 29.4 bits (67), Expect = 0.93
Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Query: 59 EQKQNELDNNVNS-LGY 74
E+ Q ELDNN LGY
Sbjct: 591 EEIQQELDNNAQGILGY 607
>gnl|CDD|153331 cd07647, F-BAR_PSTPIP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine
Phosphatase-Interacting Proteins. F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. Vetebrates contain two
Proline-Serine-Threonine Phosphatase-Interacting
Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are
mainly expressed in hematopoietic cells and are
involved in the regulation of cell adhesion and
motility. Mutations in PSTPIPs have been shown to cause
autoinflammatory disorders. PSTPIP1 contains an
N-terminal F-BAR domain, PEST motifs, and a C-terminal
SH3 domain, while PSTPIP2 contains only the N-terminal
F-BAR domain. F-BAR domains form banana-shaped dimers
with a positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 239
Score = 28.2 bits (63), Expect = 1.7
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 27 ELQDYFRKRAEVELDYSKSLDKLARS 52
EL+D+ ++RA+ E DY K+L KL++S
Sbjct: 23 ELEDFLKQRAKAEEDYGKALLKLSKS 48
>gnl|CDD|153342 cd07658, F-BAR_NOSTRIN, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase
TRaffic INducer (NOSTRIN). F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. Nitric Oxide Synthase TRaffic
INducer (NOSTRIN) is expressed in endothelial and
epithelial cells and is involved in the regulation,
trafficking and targeting of endothelial NOS (eNOS).
NOSTRIN facilitates the endocytosis of eNOS by
coordinating the functions of dynamin and the
Wiskott-Aldrich syndrome protein (WASP). Increased
expression of NOSTRIN may be correlated to
preeclampsia. NOSTRIN contains an N-terminal F-BAR
domain and a C-terminal SH3 domain. F-BAR domains form
banana-shaped dimers with a positively-charged concave
surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules. The F-BAR domain of NOSTRIN is
necessary and sufficient for its membrane association
and is responsible for its subcellular localization.
Length = 239
Score = 28.1 bits (63), Expect = 1.9
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 27 ELQDYFRKRAEVELDYSKSLDKLARSLQ 54
EL ++RAE+EL+Y+K L KL+ L
Sbjct: 23 ELATVLQERAELELNYAKGLSKLSGKLS 50
>gnl|CDD|233409 TIGR01429, AMP_deaminase, AMP deaminase. This model describes
AMP deaminase, a large, well-conserved eukaryotic
protein involved in energy metabolism. Most members of
the family have an additional, poorly alignable region
of 150 amino acids or more N-terminal to the region
included in the model.
Length = 611
Score = 28.3 bits (63), Expect = 2.1
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 41 DYSKSLDKLARSLQLRHK---EQKQNELDNNVNSLGYQYEVEDLSMKSTSGKASPPE 94
D +++ LA++L LR K D L +Q E + ++ PP
Sbjct: 2 DLAEAAKSLAKALMLREKYARLAYHRFPDTTAQYLSHQGYPESVPLEEGLPDFHPPP 58
>gnl|CDD|222346 pfam13728, TraF, F plasmid transfer operon protein. TraF protein
undergoes proteolytic processing associated with export.
The 19 amino acids at the amino terminus of the
polypeptides appear to constitute a typical membrane
leader peptide - not included in this family, while the
remainder of the molecule is predicted to be primarily
hydrophilic in character. F plasmid TraF and TraH are
required for F pilus assembly and F plasmid transfer,
and they are both localised to the outer membrane in the
presence of the complete F transfer region, especially
TraV, the putative anchor.
Length = 215
Score = 27.6 bits (62), Expect = 2.5
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 15/53 (28%)
Query: 27 ELQDYFRKRAEV-------------ELDYSK--SLDKLARSLQLRHKEQKQNE 64
LQ + +A ELDY+ AR L ++QK++
Sbjct: 61 RLQRFILDKASQFADTWQRVLLTNPELDYNLRRPTSNAARQTYLAQRKQKKDA 113
>gnl|CDD|178774 PLN03236, PLN03236, 4-alpha-glucanotransferase; Provisional.
Length = 745
Score = 27.7 bits (61), Expect = 2.7
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Query: 132 RYENETAPSPSCEDTES-----EEETARR 155
RY ET SPSC DT + E + ARR
Sbjct: 614 RYPYETVCSPSCHDTMTTRAWWEADAARR 642
>gnl|CDD|153362 cd07678, F-BAR_FCHSD1, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of FCH and double SH3
domains 1 (FCHSD1). F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. FCH and double SH3 domains 1 (FCHSD1)
contains an N-terminal F-BAR domain and two SH3 domains
at the C-terminus. It has been characterized only in
silico, and its biological function is still unknown.
F-BAR domains form banana-shaped dimers with a
positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 263
Score = 26.9 bits (59), Expect = 4.5
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 5 LQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNE 64
L+ EQL L + + ++ +++ Y ++RA +E +Y ++L +LA R + NE
Sbjct: 1 LRFLEQLSILQTKQQRDAELLEDIRSYSKQRAAIEREYGQALQRLASQFLKRDWHRGGNE 60
>gnl|CDD|140294 PTZ00268, PTZ00268, glycosylphosphatidylinositol-specific
phospholipase C; Provisional.
Length = 380
Score = 27.2 bits (60), Expect = 4.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 1 MDIRLQLNEQLRCLDLRMET 20
M +R QL+ +R LDLR+ T
Sbjct: 88 MSVRAQLDHGVRYLDLRVAT 107
>gnl|CDD|153337 cd07653, F-BAR_CIP4-like, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting
Protein 4 and similar proteins. F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. This subfamily is composed of
Cdc42-Interacting Protein 4 (CIP4), Formin Binding
Protein 17 (FBP17), FormiN Binding Protein 1-Like
(FNBP1L), and similar proteins. CIP4 and FNBP1L are
Cdc42 effectors that bind Wiskott-Aldrich syndrome
protein (WASP) and function in endocytosis. CIP4 and
FBP17 bind to the Fas ligand and may be implicated in
the inflammatory response. CIP4 may also play a role in
phagocytosis. Members of this subfamily typically
contain an N-terminal F-BAR domain and a C-terminal SH3
domain. In addition, some members such as FNBP1L
contain a central Cdc42-binding HR1 domain. F-BAR
domains form banana-shaped dimers with a
positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 251
Score = 26.1 bits (58), Expect = 7.5
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 31 YFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELD---------NNVNSLGYQYEV 78
+ ++RA +E +Y+K L KL + + KE+ + N VN + Q+E+
Sbjct: 27 FVKERAAIEQEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIAGQHEL 83
>gnl|CDD|153333 cd07649, F-BAR_GAS7, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific
protein 7. F-BAR domains are dimerization modules that
bind and bend membranes and are found in proteins
involved in membrane dynamics and actin reorganization.
Growth Arrest Specific protein 7 (GAS7) is mainly
expressed in the brain and is required for neurite
outgrowth. It may also play a role in the protection
and migration of embryonic stem cells.
Treatment-related acute myeloid leukemia (AML) has been
reported resulting from mixed-lineage leukemia
(MLL)-GAS7 translocations as a complication of primary
cancer treatment. GAS7 contains an N-terminal SH3
domain, followed by a WW domain, and a central F-BAR
domain. F-BAR domains form banana-shaped dimers with a
positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 233
Score = 25.7 bits (56), Expect = 9.8
Identities = 10/26 (38%), Positives = 21/26 (80%)
Query: 27 ELQDYFRKRAEVELDYSKSLDKLARS 52
E+ ++ R+R ++E +Y+K+L KL++S
Sbjct: 23 EMAEFIRERIKIEEEYAKNLSKLSQS 48
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.307 0.125 0.335
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,606,625
Number of extensions: 670266
Number of successful extensions: 564
Number of sequences better than 10.0: 1
Number of HSP's gapped: 563
Number of HSP's successfully gapped: 56
Length of query: 157
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 68
Effective length of database: 6,990,096
Effective search space: 475326528
Effective search space used: 475326528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.0 bits)