RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10068
(157 letters)
>2efl_A Formin-binding protein 1; EFC domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Length = 305
Score = 49.3 bits (117), Expect = 7e-08
Identities = 14/71 (19%), Positives = 32/71 (45%)
Query: 1 MDIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQ 60
M +L +Q L+ + ++ + + ++R E+EL Y+K L L++ Q + +
Sbjct: 6 MSWGTELWDQFDNLEKHTQWGIDILEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSK 65
Query: 61 KQNELDNNVNS 71
++ E
Sbjct: 66 EEEEYKYTSCK 76
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Length = 301
Score = 47.8 bits (113), Expect = 3e-07
Identities = 11/60 (18%), Positives = 23/60 (38%)
Query: 6 QLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNEL 65
+ Q L+ + ++ + ++R EVE Y+K L L + + + E
Sbjct: 4 GSSGQFEVLERHTQWGLDLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAKDDPES 63
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural
genomics consortium, BCR, CR associated substrate,
transferase; 2.18A {Homo sapiens}
Length = 406
Score = 40.9 bits (95), Expect = 6e-05
Identities = 5/52 (9%), Positives = 19/52 (36%)
Query: 13 CLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNE 64
L E + ++ ++ + +R + + +Y+ L ++ +
Sbjct: 16 VLQQMQEAELRLLEGMRKWMAQRVKSDREYAGLLHHMSLQDSGGQSRAISPD 67
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH,
adaptor, endocytosis, phosphoprotein; 2.40A
{Saccharomyces cerevisiae}
Length = 287
Score = 38.6 bits (89), Expect = 4e-04
Identities = 11/81 (13%), Positives = 30/81 (37%)
Query: 5 LQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNE 64
E + +R+ + + F++ A ++ +Y++ L K+ + K
Sbjct: 39 KSPYEATETIRIRLSQVKLLNKDFYLLFKELANLKRNYAQQLRKIIAENEDITKILNAQM 98
Query: 65 LDNNVNSLGYQYEVEDLSMKS 85
+++NV + S+
Sbjct: 99 IESNVLTPQEMSAFRFNSLGE 119
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens}
Length = 276
Score = 37.4 bits (86), Expect = 0.001
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 6 QLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQ 60
+ N L M+ EL D+ R+RA +E YS+S+ KLA+S +
Sbjct: 15 EKNSGFDVLYHNMKHGQISTKELADFVRERATIEEAYSRSMTKLAKSASNYSQLG 69
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.001
Identities = 25/163 (15%), Positives = 47/163 (28%), Gaps = 33/163 (20%)
Query: 11 LRCLDLRMETQT------AVIGELQDYFRKRAEVELDYSK--SLDKLARSLQ-----LRH 57
R DL E T ++I E D K + DKL ++ L
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLAT----WDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 58 KEQKQN--EL---DNNVN------SL---GYQYEVEDLSMKSTSGKASPPEPNNNNDDEF 103
E ++ L + + SL + + + + +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 104 QDGVLNLKKKSAQEFTIEN-IISREKHARRYENETAPSPSCED 145
L LK K E+ + I+ + ++++ P D
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD-LIPPYLD 470
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 35.9 bits (82), Expect = 0.003
Identities = 11/51 (21%), Positives = 24/51 (47%)
Query: 10 QLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQ 60
+ R+E + +LQ ++RA++E Y+KSL ++ ++
Sbjct: 9 NYKRTTKRIEDGYKLCNDLQQLIQERADIEKGYAKSLRTWSKKWGELIEKG 59
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis;
2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A
3hai_A 3q84_A
Length = 312
Score = 35.6 bits (81), Expect = 0.004
Identities = 9/51 (17%), Positives = 23/51 (45%)
Query: 10 QLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQ 60
+ R++ + +L + +RA +E Y++ L + AR + ++
Sbjct: 30 NYKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKG 80
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis;
2.70A {Homo sapiens}
Length = 350
Score = 35.3 bits (80), Expect = 0.005
Identities = 9/51 (17%), Positives = 23/51 (45%)
Query: 10 QLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQ 60
+ R++ + +L + +RA +E Y++ L + AR + ++
Sbjct: 30 NYKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKG 80
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis;
2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Length = 337
Score = 34.9 bits (79), Expect = 0.006
Identities = 9/53 (16%), Positives = 24/53 (45%)
Query: 10 QLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQ 62
+ R++ + +L ++RA++E Y++ L A+ + ++ Q
Sbjct: 21 NYKRTVKRIDDGHRLCNDLMSCVQERAKIEKAYAQQLTDWAKRWRQLIEKGPQ 73
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P;
mouse, BAR domain, endocytosis; 2.60A {Mus musculus}
PDB: 3qe6_A
Length = 320
Score = 34.8 bits (79), Expect = 0.006
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 10 QLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQ 62
R R+E + G+L F++RA +E Y++ L AR + ++ Q
Sbjct: 21 NYRRTVQRVEDGHRLCGDLVSCFQERARIEKAYAQQLADWARKWRGAVEKGPQ 73
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle,
endocytosis, phosphoprotein, polymorphism; 2.78A {Homo
sapiens}
Length = 486
Score = 34.0 bits (76), Expect = 0.016
Identities = 10/46 (21%), Positives = 23/46 (50%)
Query: 17 RMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQ 62
R++ + +L + +RA +E Y++ L + AR + ++ Q
Sbjct: 30 RIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQ 75
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium,
SGC, protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 32.9 bits (74), Expect = 0.034
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 14 LDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNEL 65
+T + EL + KRA EL+++KS K+A + ++ ++Q L
Sbjct: 19 ALEYAKTWSRYAKELLAWTEKRASYELEFAKSTMKIAEAGKVSIQQQSHMPL 70
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 1.4
Identities = 5/30 (16%), Positives = 16/30 (53%), Gaps = 8/30 (26%)
Query: 111 KKKSAQEFTIENIISREKHARRYENETAPS 140
+K++ ++ + + K Y +++AP+
Sbjct: 18 EKQA-----LKKLQASLK---LYADDSAPA 39
Score = 26.8 bits (58), Expect = 2.5
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 23/46 (50%)
Query: 44 KSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVED---LSMKST 86
++L KL SL+L Y + L++K+T
Sbjct: 20 QALKKLQASLKL--------------------YADDSAPALAIKAT 45
>1p7t_A MSG, malate synthase G; TIM barrel, glyoxylate cycle, acetyl-COA,
cysteine-sulfenic lyase; HET: ACO PG4; 1.95A
{Escherichia coli str} SCOP: c.1.13.1 PDB: 1y8b_A
1d8c_A* 2jqx_A
Length = 731
Score = 28.2 bits (63), Expect = 1.4
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 58 KEQKQNELDNNVNS-LGY 74
++ Q ELDNNV LGY
Sbjct: 589 AQEIQQELDNNVQGILGY 606
>1n8i_A Probable malate synthase G; glyoxylate pathway, acetyl coenzyme A,
isocitrate lyase, persistence, GLCB, structural
genomics, PSI; 2.10A {Mycobacterium tuberculosis} SCOP:
c.1.13.1 PDB: 1n8w_A* 2gq3_A*
Length = 741
Score = 27.8 bits (62), Expect = 1.7
Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 58 KEQKQNELDNNVNS-LGY 74
++ + E+DNN S LGY
Sbjct: 591 PDEIREEVDNNCQSILGY 608
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc
binding, structural genomics, PSI; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Length = 55
Score = 25.4 bits (56), Expect = 2.0
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 24 VIGELQDYFRKRAEVELDYSKSLDKL 49
+ + +++R D LD L
Sbjct: 12 PVSAYFNEYQRRVADGEDPKDVLDDL 37
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N
2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Length = 66
Score = 25.1 bits (55), Expect = 3.4
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 24 VIGELQDYFRKRAEVELDYSKSLDKL 49
+I + F R + K LD L
Sbjct: 13 LIADKWQPFITRVNAGENPGKVLDDL 38
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.307 0.125 0.335
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,181,161
Number of extensions: 114141
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 28
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (24.7 bits)