RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10068
         (157 letters)



>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 288

 Score = 44.8 bits (105), Expect = 9e-07
 Identities = 14/71 (19%), Positives = 32/71 (45%)

Query: 1  MDIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQ 60
          M    +L +Q   L+   +    ++ +   + ++R E+EL Y+K L  L++  Q +   +
Sbjct: 1  MSWGTELWDQFDNLEKHTQWGIDILEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSK 60

Query: 61 KQNELDNNVNS 71
          ++ E       
Sbjct: 61 EEEEYKYTSCK 71


>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 279

 Score = 39.1 bits (90), Expect = 8e-05
 Identities = 11/55 (20%), Positives = 22/55 (40%)

Query: 10 QLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNE 64
          Q   L+   +    ++     + ++R EVE  Y+K L  L +    +   +   E
Sbjct: 1  QFEVLERHTQWGLDLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAKDDPE 55


>d1ef4a_ a.4.11.1 (A:) RNA polymerase subunit RPB10 {Archaeon
          Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 55

 Score = 25.3 bits (56), Expect = 0.83
 Identities = 5/26 (19%), Positives = 10/26 (38%)

Query: 24 VIGELQDYFRKRAEVELDYSKSLDKL 49
           +    + +++R     D    LD L
Sbjct: 12 PVSAYFNEYQRRVADGEDPKDVLDDL 37


>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS)
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 353

 Score = 24.8 bits (53), Expect = 6.4
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 11/48 (22%)

Query: 1  MDIRLQLNEQLRCLDLRMET-------QTAVIGELQDYFRKRAEVELD 41
          +D RL      R +DLR  T       Q  V    ++Y   +   E+ 
Sbjct: 24 LDTRLDY----RVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVH 67


>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase
          (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
          Length = 356

 Score = 24.3 bits (52), Expect = 7.3
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 11/47 (23%)

Query: 2  DIRLQLNEQLRCLDLRMET-------QTAVIGELQDYFRKRAEVELD 41
          ++RL+     R LDLR          +  VI  + D+  +   V+++
Sbjct: 21 ELRLKY----RYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVE 63


>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase
           NRDD subunit {Bacteriophage T4 [TaxId: 10665]}
          Length = 561

 Score = 24.1 bits (52), Expect = 9.9
 Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 2/111 (1%)

Query: 44  KSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVEDLSMKSTSGKASPPEPNNNNDDEF 103
           + +D    +L  R    K   +   V  + YQ     + +K         +   ++    
Sbjct: 318 ERMDLCFEALMCRISSLK--GVKATVAPILYQEGAFGVRLKPDDDIIELFKNGRSSVSLG 375

Query: 104 QDGVLNLKKKSAQEFTIENIISREKHARRYENETAPSPSCEDTESEEETAR 154
             G+  L     ++   E +     H +++   T  + S   T +E    R
Sbjct: 376 YIGIHELNILVGRDIGREILTKMNAHLKQWTERTGFAFSLYSTPAENLCYR 426


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.307    0.125    0.335 

Gapped
Lambda     K      H
   0.267   0.0485    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 519,704
Number of extensions: 21726
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 10
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 49 (23.2 bits)