BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1007
(445 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|348515307|ref|XP_003445181.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
[Oreochromis niloticus]
Length = 580
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 163/348 (46%), Positives = 208/348 (59%), Gaps = 63/348 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
HG+CGV+V+RVSGP + AL+ MA + Q++ PR A LR+I DP S VLD GL LWFP
Sbjct: 124 HGRCGVAVVRVSGPASATALRCMAGF-TQRLPPPRTALLRSITDPRSTEVLDRGLVLWFP 182
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SF+GED EF +HG AVI A+L AL +PGLRPAE GEF++RAF KL LT+ E
Sbjct: 183 APRSFSGEDSVEFHIHGGPAVITAVLQALGSVPGLRPAEAGEFTRRAFQAGKLGLTEVEG 242
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
LGDLI AETE QR++AL QM G L +L Y D+S+
Sbjct: 243 LGDLIHAETEAQRRQALRQMSGELGRL-----------------YQDWSD---------- 275
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
R++ CLA VEA+IDFSEDE+IED +LN V
Sbjct: 276 -------------------------RLKR------CLAHVEAFIDFSEDELIEDGVLNRV 304
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
V L IE+H++ + G R+R G++ VI G N GKSSL+N LCQ+ +IV+ I
Sbjct: 305 DVSVRDLQAEIERHLK-DERRGERLRGGVQVVIAGATNAGKSSLLNKLCQRPAAIVSPIA 363
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG--NLLEKNNQ 443
GTTRDV+E LD+GG+PV+L DTAGLR +SD++E EG LE+ Q
Sbjct: 364 GTTRDVVETALDLGGFPVLLSDTAGLR-DSSDLVEREGVRRALERVEQ 410
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
LA +TIFALSSGHG+CGV+V+RVSGP + AL+ MA + Q++P PR A LR+I DP S
Sbjct: 111 LADADTIFALSSGHGRCGVAVVRVSGPASATALRCMAGF-TQRLPPPRTALLRSITDPRS 169
Query: 84 KVVLDEGLCLWFP 96
VLD GL LWFP
Sbjct: 170 TEVLDRGLVLWFP 182
>gi|432855043|ref|XP_004068044.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
[Oryzias latipes]
Length = 516
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 159/342 (46%), Positives = 202/342 (59%), Gaps = 68/342 (19%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMA----CYPDQKVSKPRYASLRNIVDPVSEVVLDEGLC 153
HG+CGV+V+RVSG + AL+ MA C P PR A LR+I DP S+ +LD GL
Sbjct: 54 HGRCGVAVVRVSGSASSMALRCMAGLKCCLP-----SPRTALLRSITDPNSKEILDRGLV 108
Query: 154 LWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLT 213
LWFP P+SFTGED EF +HG AVI A+L AL +PG+RPAE GEF++RAF KL LT
Sbjct: 109 LWFPGPHSFTGEDSVEFHIHGGPAVITAVLQALGSMPGMRPAEAGEFTRRAFQAGKLGLT 168
Query: 214 QTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIED 273
+ E LGDLI AETE QR++AL
Sbjct: 169 EVEGLGDLIHAETEAQRRQALR-------------------------------------- 190
Query: 274 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNI 333
Q+ G +E+ + + S + V CLA VEA+IDFSEDE+IED +
Sbjct: 191 -----------QMSGDLERLYQ--------VVSAVFQVECLAHVEAFIDFSEDELIEDGV 231
Query: 334 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIV 393
L V S V+ L IE+H++ + G R+RSG+ VI G N GKSSL+N LCQ+ +IV
Sbjct: 232 LERVDSSVITLLAEIERHLK-DERRGERLRSGVHVVIAGATNAGKSSLLNTLCQRPAAIV 290
Query: 394 TSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
+SI GTTRDV+E LDIGG+PV+L DTAGLR +T D+IE EG
Sbjct: 291 SSIAGTTRDVVETGLDIGGFPVLLSDTAGLRDST-DLIEQEG 331
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 75/133 (56%), Gaps = 12/133 (9%)
Query: 3 KKSKKAAKEKAVIFFSRRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMA-- 60
+KS+ + V F+ + LA +TIFALSSGHG+CGV+V+RVSG + AL+ MA
Sbjct: 20 RKSRVTTLHQLVSTFNGVPAGLADADTIFALSSGHGRCGVAVVRVSGSASSMALRCMAGL 79
Query: 61 -CYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN 115
C +P PR A LR+I DP SK +LD GL LWFP H G + GP +
Sbjct: 80 KCC----LPSPRTALLRSITDPNSKEILDRGLVLWFPGPHSFTGEDSVEFHIHGGPAVIT 135
Query: 116 A-LKSMACYPDQK 127
A L+++ P +
Sbjct: 136 AVLQALGSMPGMR 148
>gi|193624724|ref|XP_001945984.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
[Acyrthosiphon pisum]
Length = 485
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 206/337 (61%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GKCGV+VIRVSGP T A+ +M + + +PR A L I+DP ++ LD GL LWFP
Sbjct: 31 GKCGVAVIRVSGPCTSKAILNMTHL--KYLPRPRKACLNKIIDPTTKEQLDIGLLLWFPG 88
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGEDCCEFQVHG AV+ ++L L+KLP RPA+PGEF+KR+F+NNK+DLT+ E L
Sbjct: 89 PKSFTGEDCCEFQVHGGRAVVTSVLQGLSKLPDFRPADPGEFTKRSFYNNKMDLTEVEGL 148
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI+A+TELQR++AL Q++G+L+
Sbjct: 149 ADLIEADTELQRKQALMQLEGSLR------------------------------------ 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
QL+ S +++ L N LA VEAYIDFSE + IED +L V+
Sbjct: 173 ------QLYDSWRQYL-LEN---------------LAYVEAYIDFSETDNIEDLVLENVK 210
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ +L IE H+ + N+ G +R G+K I+G PN GKSSL+N LC ++ +IVT +PG
Sbjct: 211 ENLEKLAKEIEMHL-MDNRSGELLRDGVKVAIIGAPNTGKSSLLNSLCSREAAIVTELPG 269
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD I+ LD+ GY V+L+DTAG+R+ T D+IE G
Sbjct: 270 TTRDPIQVPLDVSGYSVLLIDTAGIRSQTVDLIEGLG 306
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 52/75 (69%), Gaps = 2/75 (2%)
Query: 22 SHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDP 81
+H K+TI+ALSSG GKCGV+VIRVSGP T A+ +M + +P+PR A L I+DP
Sbjct: 15 THSRQKSTIYALSSGLGKCGVAVIRVSGPCTSKAILNMTHL--KYLPRPRKACLNKIIDP 72
Query: 82 VSKVVLDEGLCLWFP 96
+K LD GL LWFP
Sbjct: 73 TTKEQLDIGLLLWFP 87
>gi|195151833|ref|XP_002016843.1| GL21987 [Drosophila persimilis]
gi|194111900|gb|EDW33943.1| GL21987 [Drosophila persimilis]
Length = 493
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 152/338 (44%), Positives = 200/338 (59%), Gaps = 60/338 (17%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
H KCGVSVIRVSGP T AL+++ D + K R A L++ P+S+ ++D GL LWFP
Sbjct: 32 HVKCGVSVIRVSGPQTKRALRAIVGCNDYE-PKARQAYLKSFFHPISKEMIDRGLLLWFP 90
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGED CEFQVHGS+AVI A+L AL +L GLRPAEPGEF+KRAFF KLDLT+ E
Sbjct: 91 GPASFTGEDACEFQVHGSLAVIAAMLDALGRLDGLRPAEPGEFTKRAFFGGKLDLTEVEG 150
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL L+S+ ++ + N
Sbjct: 151 LADLIHAETEAQRKQAL------------------LQSMGAL-------------GRLYN 179
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
R ++++ C A +EAYIDF+E+E IE ++ +
Sbjct: 180 KWRKRLIR---------------------------CAAHLEAYIDFAEEEQIEGGVILQL 212
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
++ + G I H+ + G +R G+++VI+G PNVGKSSL+N LCQ+ +SIVT
Sbjct: 213 TKELKAVRGEIRNHLN-DQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRSVSIVTEQA 271
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRD+IE + GGYPVI DTAGLR T+D IE EG
Sbjct: 272 GTTRDIIETMHNFGGYPVIFSDTAGLRRNTADSIEREG 309
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TI++LSSGH KCGVSVIRVSGP T AL+++ D + PK R A L++ P+SK ++D
Sbjct: 24 TIYSLSSGHVKCGVSVIRVSGPQTKRALRAIVGCNDYE-PKARQAYLKSFFHPISKEMID 82
Query: 89 EGLCLWFP 96
GL LWFP
Sbjct: 83 RGLLLWFP 90
>gi|198453278|ref|XP_002137635.1| GA27334 [Drosophila pseudoobscura pseudoobscura]
gi|198132291|gb|EDY68193.1| GA27334 [Drosophila pseudoobscura pseudoobscura]
Length = 493
Score = 273 bits (699), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 151/338 (44%), Positives = 198/338 (58%), Gaps = 60/338 (17%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
H KCGVSVIRVSGP T AL+++ D + K R A L++ P+S+ ++D GL LWFP
Sbjct: 32 HVKCGVSVIRVSGPQTKRALRAIVGCNDYE-PKARQAYLKSFFHPISKEMIDRGLLLWFP 90
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGED CEFQVHGS+AVI A+L AL +L GLRPAEPGEF+KRAFF KLDLT+ E
Sbjct: 91 GPASFTGEDACEFQVHGSLAVIAAMLDALGRLDGLRPAEPGEFTKRAFFGGKLDLTEVEG 150
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR +Q +L+S ++ + N
Sbjct: 151 LADLIHAETEAQR------------------KQALLQSTGAL-------------GRLYN 179
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
R ++++ C A +EAYIDF+E+E IE ++ +
Sbjct: 180 KWRKRLIR---------------------------CAAHLEAYIDFAEEEQIEGGVILQL 212
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
++ + G I H+ + G +R G+++VI+G PNVGKSSL+N LCQ+ +SIVT
Sbjct: 213 TKELKAVRGEIRNHLN-DQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRSVSIVTEQA 271
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRD+IE + GGYPVI DTAGLR T+D IE EG
Sbjct: 272 GTTRDIIETMHNFGGYPVIFSDTAGLRRNTADSIEREG 309
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TI++LSSGH KCGVSVIRVSGP T AL+++ D + PK R A L++ P+SK ++D
Sbjct: 24 TIYSLSSGHVKCGVSVIRVSGPQTKRALRAIVGCNDYE-PKARQAYLKSFFHPISKEMID 82
Query: 89 EGLCLWFP 96
GL LWFP
Sbjct: 83 RGLLLWFP 90
>gi|91076116|ref|XP_969524.1| PREDICTED: similar to GTP binding protein (mitochondrial), putative
[Tribolium castaneum]
gi|270014577|gb|EFA11025.1| hypothetical protein TcasGA2_TC004613 [Tribolium castaneum]
Length = 479
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 162/345 (46%), Positives = 206/345 (59%), Gaps = 64/345 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GKCGV+VIRVSG T ALK C KPR A LR+I P S VLD+GL LWFP
Sbjct: 27 GKCGVAVIRVSGASTELALK---CLTGLTNPKPRTAILRSIKHPSSHEVLDKGLVLWFPG 83
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED CEF VHG IAV++++L AL LP R AEPGEF++RAF N KLDLT+ E L
Sbjct: 84 PHSFTGEDSCEFHVHGGIAVVSSVLNALGSLPDCRLAEPGEFTRRAFHNAKLDLTEVEGL 143
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL+QAETE+QR++A
Sbjct: 144 ADLLQAETEIQRKQAF-------------------------------------------- 159
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIR-SGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+Q G++ K L N R R S IKSV A VEA+IDF E E I++ +L+ V
Sbjct: 160 -----LQTQGALSK---LYN----RWRGSLIKSV---AHVEAHIDFEETETIDEGVLDLV 204
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
++ + I KH+ K G +R+G+K+VI+G PNVGKSSLMN LC++ +IVT I
Sbjct: 205 VQEIQIMRDEIRKHLNDGRK-GELLRTGVKTVILGAPNVGKSSLMNLLCKRPAAIVTPIE 263
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKNN 442
GTTRD++E L+IGGYP++L DTAGLR+ T+DIIE EG + KN+
Sbjct: 264 GTTRDILEVTLNIGGYPLVLTDTAGLRSETNDIIEKEGIIRAKNS 308
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 105/313 (33%), Positives = 146/313 (46%), Gaps = 95/313 (30%)
Query: 12 KAVIFFSRRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPR 71
K FF R+ ++TI+ALSSG GKCGV+VIRVSG T ALK C PKPR
Sbjct: 7 KTFKFFLRK------QSTIYALSSGQGKCGVAVIRVSGASTELALK---CLTGLTNPKPR 57
Query: 72 YASLRNIVDPVSKVVLDEGLCLWFPR------------HGKCGVSVIRVSGPDTLNALKS 119
A LR+I P S VLD+GL LWFP H G++V+ LNAL S
Sbjct: 58 TAILRSIKHPSSHEVLDKGLVLWFPGPHSFTGEDSCEFHVHGGIAVV----SSVLNALGS 113
Query: 120 MACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVI 179
+ PD ++++P + R A
Sbjct: 114 L---PDCRLAEPGEFTRR---------------------------------------AFH 131
Query: 180 NAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKG 239
NA L LT++ GL DL Q E TE+QR++A Q +G
Sbjct: 132 NAKLD-LTEVEGLA-----------------DLLQAE---------TEIQRKQAFLQTQG 164
Query: 240 NLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNK 299
L +LY+ WR +++S+A VEA+IDF E E I++ +L+ V ++ + I KH+ K
Sbjct: 165 ALSKLYNRWRGSLIKSVAHVEAHIDFEETETIDEGVLDLVVQEIQIMRDEIRKHLNDGRK 224
Query: 300 CGVRIRSGIKSVI 312
G +R+G+K+VI
Sbjct: 225 -GELLRTGVKTVI 236
>gi|158301166|ref|XP_320903.3| AGAP002133-PA [Anopheles gambiae str. PEST]
gi|157012341|gb|EAA00934.3| AGAP002133-PA [Anopheles gambiae str. PEST]
Length = 486
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 144/340 (42%), Positives = 194/340 (57%), Gaps = 67/340 (19%)
Query: 99 GKCGVSVIRVSGPDT---LNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLW 155
GKCGV+VIRVSG + ++ + +P+ PR A L I + ++D GL LW
Sbjct: 29 GKCGVAVIRVSGSASRAIVDKKTRLKSFPE-----PRRAVLTKIFHGQTNAMIDRGLLLW 83
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
FP P SFTGED EF VHG A+++A+ +L P R AEPGEF+KRAF+ K+DLT+
Sbjct: 84 FPGPQSFTGEDTIEFHVHGGTAIVSAMYDSLATFPDTRIAEPGEFTKRAFYAGKMDLTEV 143
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
E L DLI AETE QR++AL Q G L Y
Sbjct: 144 EGLADLIHAETEAQRKQALRQANGQLSSFY------------------------------ 173
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILN 335
N +R+Q+VQ +AS+EAYIDF+ED+ ++DN+L+
Sbjct: 174 -NDLRTQLVQ---------------------------AIASIEAYIDFAEDQDVDDNVLS 205
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+ G ++ H+ N+ G R+R+G+++ IVG PNVGKSSL+N L Q+ +SIVTS
Sbjct: 206 VAVQNIEGAIGQLKAHLN-DNRRGERLRNGVRTAIVGAPNVGKSSLINLLSQRNVSIVTS 264
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I GTTRD++E H DIGGYPVIL DTAGLR T D++E+EG
Sbjct: 265 IAGTTRDIVESHYDIGGYPVILGDTAGLRQGTEDVVESEG 304
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 60/115 (52%), Gaps = 19/115 (16%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGP------DTLNALKSMACYPDQKVPKPRYASLRNIVDP 81
+TIF LSSG GKCGV+VIRVSG D LKS P+PR A L I
Sbjct: 19 STIFGLSSGFGKCGVAVIRVSGSASRAIVDKKTRLKSF--------PEPRRAVLTKIFHG 70
Query: 82 VSKVVLDEGLCLWFPR----HGKCGVSVIRVSGPDTLNAL-KSMACYPDQKVSKP 131
+ ++D GL LWFP G+ + G ++A+ S+A +PD ++++P
Sbjct: 71 QTNAMIDRGLLLWFPGPQSFTGEDTIEFHVHGGTAIVSAMYDSLATFPDTRIAEP 125
>gi|195111166|ref|XP_002000150.1| GI22686 [Drosophila mojavensis]
gi|193916744|gb|EDW15611.1| GI22686 [Drosophila mojavensis]
Length = 494
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 149/338 (44%), Positives = 193/338 (57%), Gaps = 60/338 (17%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
H KCGVSVIRVSGP T AL+++ + + K R A L++ P S+ ++D GL LWFP
Sbjct: 33 HVKCGVSVIRVSGPQTKQALRAVVNNSEYE-PKQRLAYLKSFYHPTSKEIIDRGLLLWFP 91
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGED CEFQVHGS+AVI+A+L AL +LPGLRPA+PGEF+KRAFF KLDLT+ E
Sbjct: 92 GPASFTGEDACEFQVHGSLAVISAMLDALGQLPGLRPAQPGEFTKRAFFGGKLDLTEVEG 151
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR +Q +L+S ++ D +I
Sbjct: 152 LSDLIHAETEAQR------------------KQALLQSTGTLGRLYDNWRKRLIR----- 188
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
C A +EAYIDF+EDE IE ++ +
Sbjct: 189 -----------------------------------CAAHLEAYIDFAEDEQIEGGVVLKL 213
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
++ + I H+ + G +R G+++VI+G PNVGKSSL+N LCQ+ +SIVT
Sbjct: 214 TKELKAVQREIRAHLN-DQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRAVSIVTDQA 272
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRD+IE GGYPV+ DTAGLR T+D IE EG
Sbjct: 273 GTTRDIIETTHSFGGYPVVFADTAGLRKHTTDAIEMEG 310
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TI++LSSGH KCGVSVIRVSGP T AL+++ + + PK R A L++ P SK ++D
Sbjct: 25 TIYSLSSGHVKCGVSVIRVSGPQTKQALRAVVNNSEYE-PKQRLAYLKSFYHPTSKEIID 83
Query: 89 EGLCLWFP 96
GL LWFP
Sbjct: 84 RGLLLWFP 91
>gi|195389280|ref|XP_002053305.1| GJ23413 [Drosophila virilis]
gi|194151391|gb|EDW66825.1| GJ23413 [Drosophila virilis]
Length = 494
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 147/338 (43%), Positives = 198/338 (58%), Gaps = 60/338 (17%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
H KCGVSVIRVSGP T AL+++ + + K R A L++ P S+ ++D GL LWFP
Sbjct: 33 HVKCGVSVIRVSGPQTKQALRAIVDNGEYE-PKQRQAYLKSFYHPTSKEIIDRGLLLWFP 91
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGED CEFQVHGS+AVI A+L AL +LPGLRPA+PGEF+KRAFF KLDLT+ E
Sbjct: 92 GPASFTGEDACEFQVHGSLAVIAAMLDALGQLPGLRPAQPGEFTKRAFFGGKLDLTEVEG 151
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR +Q +L+S ++ + +
Sbjct: 152 LADLIHAETEAQR------------------KQALLQSTGAL-------------GRLYD 180
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+ R ++++ C A +EAYIDF+E+E IE ++ +
Sbjct: 181 SWRKRLIR---------------------------CAAHLEAYIDFAEEEQIEGGVIVKL 213
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
++ + I H+ + G +R G+++VI+G PNVGKSSL+N LCQ+ +SIVT
Sbjct: 214 TRELNAVKQEIRAHLN-DQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRAVSIVTEQA 272
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRD+IE + GGYPV+ DTAGLR T+D IE EG
Sbjct: 273 GTTRDIIETMHNFGGYPVVFADTAGLRKHTTDTIEVEG 310
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TI++LSSGH KCGVSVIRVSGP T AL+++ + + PK R A L++ P SK ++D
Sbjct: 25 TIYSLSSGHVKCGVSVIRVSGPQTKQALRAIVDNGEYE-PKQRQAYLKSFYHPTSKEIID 83
Query: 89 EGLCLWFP 96
GL LWFP
Sbjct: 84 RGLLLWFP 91
>gi|195035994|ref|XP_001989456.1| GH18796 [Drosophila grimshawi]
gi|193893652|gb|EDV92518.1| GH18796 [Drosophila grimshawi]
Length = 495
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 148/338 (43%), Positives = 192/338 (56%), Gaps = 60/338 (17%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
H KCGVSVIRVSGP T AL+++ D + K R A L++ P ++ ++D GL LWFP
Sbjct: 35 HIKCGVSVIRVSGPQTKQALRAIVNNVDYE-PKQRQAYLKSFYHPANKEIIDRGLLLWFP 93
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGED CEFQVHGS+AVI A+L AL +LPGLRPA+PGEF+KRAFF KLDLT+ E
Sbjct: 94 GPASFTGEDACEFQVHGSLAVIAAMLDALGQLPGLRPAQPGEFTKRAFFGGKLDLTEVEG 153
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR +Q +L+S ++ D +I
Sbjct: 154 LADLIHAETEAQR------------------KQALLQSTGALARLYDNWRKRLIR----- 190
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
C A +EAYIDF+E+E IE +L +
Sbjct: 191 -----------------------------------CAAHLEAYIDFAEEEQIEGGVLLQL 215
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
++ + I H+ + G +R G+++VI+G PNVGKSSL+N LCQ+ +SIV
Sbjct: 216 SRELNAVKREIRLHLN-DQRQGELLRHGVRTVIIGAPNVGKSSLLNLLCQRAVSIVAEKA 274
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRD+IE + GGYPV+ DTAGLR T+D IE EG
Sbjct: 275 GTTRDIIETTHNFGGYPVVFADTAGLRRDTTDTIEVEG 312
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 17 FSRRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLR 76
F R S + TI++LSSGH KCGVSVIRVSGP T AL+++ D + PK R A L+
Sbjct: 15 FRRFASGSSSGCTIYSLSSGHIKCGVSVIRVSGPQTKQALRAIVNNVDYE-PKQRQAYLK 73
Query: 77 NIVDPVSKVVLDEGLCLWFP 96
+ P +K ++D GL LWFP
Sbjct: 74 SFYHPANKEIIDRGLLLWFP 93
>gi|195504826|ref|XP_002099245.1| GE10804 [Drosophila yakuba]
gi|194185346|gb|EDW98957.1| GE10804 [Drosophila yakuba]
Length = 493
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 151/344 (43%), Positives = 195/344 (56%), Gaps = 60/344 (17%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
H KCGVSVIRVSGP T AL+++ + + K R A L++ P S+ ++D GL LWFP
Sbjct: 32 HVKCGVSVIRVSGPQTKKALRAIVANKEYE-PKARQAYLKSFYHPASKEMIDRGLLLWFP 90
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGED CEFQVHGS+AVI A+L AL K+ GLRPAEPGEF+KRAFF KLDLT+ E
Sbjct: 91 GPASFTGEDSCEFQVHGSLAVIAAMLDALGKVDGLRPAEPGEFTKRAFFGGKLDLTEVEG 150
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR +Q +L+S ++ D +I
Sbjct: 151 LADLIHAETEAQR------------------KQALLQSTGALARLYDNWRRRLIR----- 187
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
C A +EAYIDF+E+E IE I+ +
Sbjct: 188 -----------------------------------CAAHLEAYIDFAEEEQIEGGIILQL 212
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
++ + I +H+ + G +R G+++VI+G PNVGKSSL+N LCQ+ +SIVT
Sbjct: 213 GKELKAVKREIREHLS-DQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRSVSIVTDQA 271
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKN 441
GTTRD+IE + GGYPV+ DTAGLR T+D IE EG KN
Sbjct: 272 GTTRDIIETMHNFGGYPVVFSDTAGLRRYTTDSIEQEGMQRAKN 315
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 128/287 (44%), Gaps = 69/287 (24%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TI++LSSGH KCGVSVIRVSGP T AL+++ + + PK R A L++ P SK ++D
Sbjct: 24 TIYSLSSGHVKCGVSVIRVSGPQTKKALRAIVANKEYE-PKARQAYLKSFYHPASKEMID 82
Query: 89 EGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVL 148
GL LWFP GP + S C S A + ++D + +V
Sbjct: 83 RGLLLWFP-------------GPASFTGEDS--CEFQVHGS---LAVIAAMLDALGKV-- 122
Query: 149 DEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGA---LTKLPGLRPAEPGEFSKRAF 205
+G L +P FT A G LT++ GL
Sbjct: 123 -DG--LRPAEPGEFTK---------------RAFFGGKLDLTEVEGL------------- 151
Query: 206 FNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDF 265
DL E QA LQ AL ++ N WR+ ++ A +EAYIDF
Sbjct: 152 ----ADLIHAETEAQRKQA--LLQSTGALARLYDN-------WRRRLIRCAAHLEAYIDF 198
Query: 266 SEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
+E+E IE I+ + ++ + I +H+ + G +R G+++VI
Sbjct: 199 AEEEQIEGGIILQLGKELKAVKREIREHLS-DQRQGELLRDGVRTVI 244
>gi|45550813|ref|NP_651251.3| CG18528 [Drosophila melanogaster]
gi|17946252|gb|AAL49166.1| RE57978p [Drosophila melanogaster]
gi|17946567|gb|AAL49314.1| RH13838p [Drosophila melanogaster]
gi|45446626|gb|AAF56288.3| CG18528 [Drosophila melanogaster]
Length = 493
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 151/344 (43%), Positives = 195/344 (56%), Gaps = 60/344 (17%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
H KCGVSVIRVSGP T AL+++ + + K R A L++ P S+ ++D GL LWFP
Sbjct: 32 HVKCGVSVIRVSGPQTKKALRAIVANKEYE-PKARQAYLKSFYHPASKEMIDRGLLLWFP 90
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGED CEFQVHGS+AVI A+L AL K+ GLRPAEPGEF+KRAFF KLDLT+ E
Sbjct: 91 GPASFTGEDSCEFQVHGSLAVIAAMLDALGKVDGLRPAEPGEFTKRAFFGGKLDLTEVEG 150
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR +Q +L+S ++ D +I
Sbjct: 151 LADLIHAETEAQR------------------KQALLQSTGALARLYDNWRRRLIR----- 187
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
C A +EAYIDF+E+E IE I+ +
Sbjct: 188 -----------------------------------CAAHLEAYIDFAEEEQIEGGIILQL 212
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
++ + I +H+ + G +R G+++VI+G PNVGKSSL+N LCQ+ +SIVT
Sbjct: 213 GKELKAVKREIREHLS-DQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRSVSIVTDQA 271
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKN 441
GTTRD+IE + GGYPV+ DTAGLR T+D IE EG KN
Sbjct: 272 GTTRDIIETMHNFGGYPVVFSDTAGLRRYTTDSIEQEGMQRAKN 315
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 128/287 (44%), Gaps = 69/287 (24%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TI++LSSGH KCGVSVIRVSGP T AL+++ + + PK R A L++ P SK ++D
Sbjct: 24 TIYSLSSGHVKCGVSVIRVSGPQTKKALRAIVANKEYE-PKARQAYLKSFYHPASKEMID 82
Query: 89 EGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVL 148
GL LWFP GP + S C S A + ++D + +V
Sbjct: 83 RGLLLWFP-------------GPASFTGEDS--CEFQVHGS---LAVIAAMLDALGKV-- 122
Query: 149 DEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGA---LTKLPGLRPAEPGEFSKRAF 205
+G L +P FT A G LT++ GL
Sbjct: 123 -DG--LRPAEPGEFTK---------------RAFFGGKLDLTEVEGL------------- 151
Query: 206 FNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDF 265
DL E QA LQ AL ++ N WR+ ++ A +EAYIDF
Sbjct: 152 ----ADLIHAETEAQRKQA--LLQSTGALARLYDN-------WRRRLIRCAAHLEAYIDF 198
Query: 266 SEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
+E+E IE I+ + ++ + I +H+ + G +R G+++VI
Sbjct: 199 AEEEQIEGGIILQLGKELKAVKREIREHLS-DQRQGELLRDGVRTVI 244
>gi|195573463|ref|XP_002104713.1| GD18297 [Drosophila simulans]
gi|194200640|gb|EDX14216.1| GD18297 [Drosophila simulans]
Length = 493
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 151/344 (43%), Positives = 195/344 (56%), Gaps = 60/344 (17%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
H KCGVSVIRVSGP T AL+++ + + K R A L++ P S+ ++D GL LWFP
Sbjct: 32 HVKCGVSVIRVSGPQTKKALRAIVANKEYE-PKARQAYLKSFYHPASKEMIDRGLLLWFP 90
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGED CEFQVHGS+AVI A+L AL K+ GLRPAEPGEF+KRAFF KLDLT+ E
Sbjct: 91 GPASFTGEDSCEFQVHGSLAVIAAMLDALGKVDGLRPAEPGEFTKRAFFGGKLDLTEVEG 150
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR +Q +L+S ++ D +I
Sbjct: 151 LADLIHAETEAQR------------------KQALLQSTGALARLYDNWRRRLIR----- 187
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
C A +EAYIDF+E+E IE I+ +
Sbjct: 188 -----------------------------------CAAHLEAYIDFAEEEQIEGGIILQL 212
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
++ + I +H+ + G +R G+++VI+G PNVGKSSL+N LCQ+ +SIVT
Sbjct: 213 GKELKAVKLEIREHLS-DQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRSVSIVTDQA 271
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKN 441
GTTRD+IE + GGYPV+ DTAGLR T+D IE EG KN
Sbjct: 272 GTTRDIIETMHNFGGYPVVFSDTAGLRRYTTDSIEQEGMQRAKN 315
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 128/287 (44%), Gaps = 69/287 (24%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TI++LSSGH KCGVSVIRVSGP T AL+++ + + PK R A L++ P SK ++D
Sbjct: 24 TIYSLSSGHVKCGVSVIRVSGPQTKKALRAIVANKEYE-PKARQAYLKSFYHPASKEMID 82
Query: 89 EGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVL 148
GL LWFP GP + S C S A + ++D + +V
Sbjct: 83 RGLLLWFP-------------GPASFTGEDS--CEFQVHGS---LAVIAAMLDALGKV-- 122
Query: 149 DEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGA---LTKLPGLRPAEPGEFSKRAF 205
+G L +P FT A G LT++ GL
Sbjct: 123 -DG--LRPAEPGEFTK---------------RAFFGGKLDLTEVEGL------------- 151
Query: 206 FNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDF 265
DL E QA LQ AL ++ N WR+ ++ A +EAYIDF
Sbjct: 152 ----ADLIHAETEAQRKQA--LLQSTGALARLYDN-------WRRRLIRCAAHLEAYIDF 198
Query: 266 SEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
+E+E IE I+ + ++ + I +H+ + G +R G+++VI
Sbjct: 199 AEEEQIEGGIILQLGKELKAVKLEIREHLS-DQRQGELLRDGVRTVI 244
>gi|195331616|ref|XP_002032497.1| GM23491 [Drosophila sechellia]
gi|194121440|gb|EDW43483.1| GM23491 [Drosophila sechellia]
Length = 493
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 150/344 (43%), Positives = 195/344 (56%), Gaps = 60/344 (17%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
H KCGVSVIRVSGP T AL+++ + + K R A L++ P S+ ++D GL LWFP
Sbjct: 32 HVKCGVSVIRVSGPQTKKALRAIIANKEYE-PKARQAYLKSFYHPASKEMIDRGLLLWFP 90
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGED CEFQVHGS+AVI A+L AL K+ GLRPAEPGEF+KRAFF KLDLT+ E
Sbjct: 91 GPASFTGEDSCEFQVHGSLAVIAAMLDALGKVDGLRPAEPGEFTKRAFFGGKLDLTEVEG 150
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR +Q +L+S ++ D +I
Sbjct: 151 LADLIHAETEAQR------------------KQALLQSTGALARLYDNWRRRLIR----- 187
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
C A +EAYIDF+E+E IE I+ +
Sbjct: 188 -----------------------------------CAAHLEAYIDFAEEEQIEGGIILQL 212
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
++ + I +H+ + G +R G+++VI+G PNVGKSSL+N LC++ +SIVT
Sbjct: 213 GKELKAVKREIREHLS-DQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCRRSVSIVTDQA 271
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKN 441
GTTRD+IE + GGYPV+ DTAGLR T+D IE EG KN
Sbjct: 272 GTTRDIIETMHNFGGYPVVFSDTAGLRRYTTDSIEQEGMQRAKN 315
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 132/300 (44%), Gaps = 76/300 (25%)
Query: 16 FFSRRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASL 75
F SR C TI++LSSGH KCGVSVIRVSGP T AL+++ + + PK R A L
Sbjct: 18 FASRGC-------TIYSLSSGHVKCGVSVIRVSGPQTKKALRAIIANKEYE-PKARQAYL 69
Query: 76 RNIVDPVSKVVLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYAS 135
++ P SK ++D GL LWFP GP + S C S A
Sbjct: 70 KSFYHPASKEMIDRGLLLWFP-------------GPASFTGEDS--CEFQVHGS---LAV 111
Query: 136 LRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGA---LTKLPGL 192
+ ++D + +V +G L +P FT A G LT++ GL
Sbjct: 112 IAAMLDALGKV---DG--LRPAEPGEFTK---------------RAFFGGKLDLTEVEGL 151
Query: 193 RPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLI 252
DL E QA LQ AL ++ N WR+ +
Sbjct: 152 -----------------ADLIHAETEAQRKQA--LLQSTGALARLYDN-------WRRRL 185
Query: 253 LESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
+ A +EAYIDF+E+E IE I+ + ++ + I +H+ + G +R G+++VI
Sbjct: 186 IRCAAHLEAYIDFAEEEQIEGGIILQLGKELKAVKREIREHLS-DQRQGELLRDGVRTVI 244
>gi|149605447|ref|XP_001518750.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
[Ornithorhynchus anatinus]
Length = 494
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 156/338 (46%), Positives = 196/338 (57%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
HGKCGV+VIR SGP + AL + ++ +PR A+L I+DP S LD GL LWFP
Sbjct: 43 HGKCGVAVIRTSGPASGPALLRLMAR--LELPRPRTATLSLILDPDSSEPLDRGLVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P+SFTGEDC E VHG AV++ +L AL LPGLRPAE GEF+KRAF N KL LT+ E
Sbjct: 101 GPHSFTGEDCAELHVHGGPAVVSGVLQALGSLPGLRPAEAGEFTKRAFQNGKLGLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
LGDLI AETE QR++AL +QL E +L Y +SE L
Sbjct: 161 LGDLIHAETEAQRRQAL-------RQLAGELGRL----------YQGWSE-------TLT 196
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
V LA VEAYIDFSED+ IE+ +L V
Sbjct: 197 RV----------------------------------LAHVEAYIDFSEDDNIEEGVLADV 222
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+ V L I+ H++ + + G R+RSG++ VI G N GKSSL+N LCQK +IV+ +
Sbjct: 223 NTSVRGLQAEIQGHLQDARR-GERLRSGVQVVIAGPTNAGKSSLLNLLCQKPTAIVSPVA 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E L+IGG+PV+L DTAGLR T D +E EG
Sbjct: 282 GTTRDVVESALNIGGFPVLLSDTAGLR-ATQDPVEREG 318
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 21 CSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVD 80
CS + TIFALSSGHGKCGV+VIR SGP + AL + ++P+PR A+L I+D
Sbjct: 27 CSQAGSRVTIFALSSGHGKCGVAVIRTSGPASGPALLRLMAR--LELPRPRTATLSLILD 84
Query: 81 PVSKVVLDEGLCLWFP 96
P S LD GL LWFP
Sbjct: 85 PDSSEPLDRGLVLWFP 100
>gi|194909733|ref|XP_001981998.1| GG12352 [Drosophila erecta]
gi|190656636|gb|EDV53868.1| GG12352 [Drosophila erecta]
Length = 493
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 149/344 (43%), Positives = 194/344 (56%), Gaps = 60/344 (17%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
H KCGVSVIRVSGP T AL+++ + + K R A L++ P S+ ++D GL LWFP
Sbjct: 32 HVKCGVSVIRVSGPQTKKALRAIVANKEYE-PKARQAYLKSFYHPASKEMIDRGLLLWFP 90
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGED CEFQVHGS+AVI A+L AL ++ GLRPA PGEF+KRAFF KLDLT+ E
Sbjct: 91 GPASFTGEDSCEFQVHGSLAVIAAMLDALGRVDGLRPAAPGEFTKRAFFGGKLDLTEVEG 150
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR +Q +L+S ++ D +I
Sbjct: 151 LADLIHAETEAQR------------------KQALLQSTGALARLYDNWRRRLIR----- 187
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
C A +EAYIDF+E+E IE I+ +
Sbjct: 188 -----------------------------------CAAHLEAYIDFAEEEQIEGGIILQL 212
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
++ + I +H+ + G +R G+++VI+G PNVGKSSL+N LCQ+ +SIVT
Sbjct: 213 GKELKAVKREIREHLS-DQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRSVSIVTDQA 271
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKN 441
GTTRD+IE + GGYPV+ DTAGLR T+D IE EG KN
Sbjct: 272 GTTRDIIETMHNFGGYPVVFSDTAGLRRYTTDSIEQEGMQRAKN 315
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TI++LSSGH KCGVSVIRVSGP T AL+++ + + PK R A L++ P SK ++D
Sbjct: 24 TIYSLSSGHVKCGVSVIRVSGPQTKKALRAIVANKEYE-PKARQAYLKSFYHPASKEMID 82
Query: 89 EGLCLWFP 96
GL LWFP
Sbjct: 83 RGLLLWFP 90
>gi|47217399|emb|CAG00759.1| unnamed protein product [Tetraodon nigroviridis]
Length = 470
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 147/338 (43%), Positives = 191/338 (56%), Gaps = 61/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
HG+CGV+V+R SGP + AL+ +A V PR A LR+I DP S VLD GL WFP
Sbjct: 9 HGRCGVAVVRASGPASSTALRRLAGLTHTLV-PPRTALLRSITDPSSREVLDRGLVFWFP 67
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P+SFTGED EF +HG AVI A+L AL +PG+RPAE GEF++RAF K+ LT+ E
Sbjct: 68 APHSFTGEDSVEFHIHGGPAVIAAVLQALGNVPGMRPAEAGEFTRRAFQAGKMGLTEVEG 127
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
LGDLI AETE QR++AL QM G L +LY W Q + LA VEA+IDFSEDE+IED +LN
Sbjct: 128 LGDLIHAETEAQRRQALRQMSGELGRLYQSWSQRLKRCLAHVEAFIDFSEDELIEDGVLN 187
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
G +E+H+ + G R+RSG++ VI A+ + ++LNT+
Sbjct: 188 RGMCAHACSQGEVEQHLT-DERRGERLRSGVQVVIAGATNAG----------KSSLLNTL 236
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
CQ+ +IV+ I
Sbjct: 237 ------------------------------------------------CQRPAAIVSPIA 248
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E LDIGG+PV+L DTAGLR + D++E EG
Sbjct: 249 GTTRDVVETPLDIGGFPVLLSDTAGLRDSL-DLVEREG 285
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
+IFALSSGHG+CGV+V+R SGP + AL+ +A VP PR A LR+I DP S+ VLD
Sbjct: 1 SIFALSSGHGRCGVAVVRASGPASSTALRRLAGLTHTLVP-PRTALLRSITDPSSREVLD 59
Query: 89 EGLCLWFP 96
GL WFP
Sbjct: 60 RGLVFWFP 67
>gi|194770800|ref|XP_001967476.1| GF20720 [Drosophila ananassae]
gi|190618486|gb|EDV34010.1| GF20720 [Drosophila ananassae]
Length = 493
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 146/336 (43%), Positives = 193/336 (57%), Gaps = 60/336 (17%)
Query: 100 KCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKP 159
KCGVSVIRVSGP T AL+++ + + K R A L++ P S+ ++D GL LWFP P
Sbjct: 34 KCGVSVIRVSGPQTKKALRAIVGNKEYE-PKARQAYLKSFFHPASKEMIDRGLLLWFPGP 92
Query: 160 NSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALG 219
SFTGED CEFQVHGS+AVI A+L AL K+ GLRPAEPGEF+KRAFF KLDLT+ E L
Sbjct: 93 ASFTGEDSCEFQVHGSLAVIAAMLDALGKVDGLRPAEPGEFTKRAFFGGKLDLTEVEGLA 152
Query: 220 DLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTV 279
DLI AETE QR +Q +L+S ++ D +I
Sbjct: 153 DLIHAETEAQR------------------KQALLQSTGALGRLYDNWRRRLIR------- 187
Query: 280 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRS 339
C A +EAYIDF+E+E IE ++ +
Sbjct: 188 ---------------------------------CAAHLEAYIDFAEEEQIEGGVILQLTK 214
Query: 340 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGT 399
++ + I++H+ + G +R G+++VI+G PNVGKSSL+N LCQ+ ++IVT GT
Sbjct: 215 ELNSVKREIKEHLS-DQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRSVAIVTDQAGT 273
Query: 400 TRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TRD+IE + GGYPV+ DTAGLR T+D IE EG
Sbjct: 274 TRDIIETMHNFGGYPVVFSDTAGLRKNTTDSIEQEG 309
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 129/287 (44%), Gaps = 69/287 (24%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TI++LSSG+ KCGVSVIRVSGP T AL+++ + + PK R A L++ P SK ++D
Sbjct: 24 TIYSLSSGNVKCGVSVIRVSGPQTKKALRAIVGNKEYE-PKARQAYLKSFFHPASKEMID 82
Query: 89 EGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVL 148
GL LWFP GP + S C S A + ++D + +V
Sbjct: 83 RGLLLWFP-------------GPASFTGEDS--CEFQVHGS---LAVIAAMLDALGKV-- 122
Query: 149 DEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGA---LTKLPGLRPAEPGEFSKRAF 205
+G L +P FT A G LT++ GL
Sbjct: 123 -DG--LRPAEPGEFTK---------------RAFFGGKLDLTEVEGL------------- 151
Query: 206 FNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDF 265
DL E QA LQ AL ++ N WR+ ++ A +EAYIDF
Sbjct: 152 ----ADLIHAETEAQRKQA--LLQSTGALGRLYDN-------WRRRLIRCAAHLEAYIDF 198
Query: 266 SEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
+E+E IE ++ + ++ + I++H+ + G +R G+++VI
Sbjct: 199 AEEEQIEGGVILQLTKELNSVKREIKEHLS-DQRQGELLRDGVRTVI 244
>gi|301613774|ref|XP_002936375.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
[Xenopus (Silurana) tropicalis]
Length = 491
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 149/338 (44%), Positives = 198/338 (58%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
HGKCGVSVIR SGP + +AL+ + + +++ PR +L +++ P + +LD GL LWF
Sbjct: 35 HGKCGVSVIRTSGPASGDALQLLTGW--KQLPPPRRVTLTSLLCPTTGELLDRGLVLWFS 92
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDCCE+ VHG AV+ +L AL + LRPAEPGEF+KRAF N KLDLT+ E
Sbjct: 93 GPKSFTGEDCCEYHVHGGPAVVMGVLQALGTVQMLRPAEPGEFTKRAFQNGKLDLTEAEG 152
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
LGDLI AETE+QR++AL +Q+ E QL Y +S
Sbjct: 153 LGDLIHAETEIQRRQAL-------RQMSGELGQL----------YQKWSH---------- 185
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+ V LA VEA+IDFSED+ +E+N+L +V
Sbjct: 186 -------------------------------RLVTALAHVEAFIDFSEDDNVEENVLTSV 214
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
S+V L +E H++ S + G R+R G+ V+ G N GKSSL+N QK +IV+ IP
Sbjct: 215 DSEVKNLQEELEDHLKDSRR-GERLRDGLHLVLAGATNAGKSSLLNLTSQKPAAIVSPIP 273
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E L+IGGYPVI+ DTAGLR + D +E EG
Sbjct: 274 GTTRDVVETVLNIGGYPVIMSDTAGLR-DSEDPVEKEG 310
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 125/301 (41%), Positives = 171/301 (56%), Gaps = 65/301 (21%)
Query: 16 FFSRRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASL 75
F RR H +++TIFALSSGHGKCGVSVIR SGP + +AL+ + + +++P PR +L
Sbjct: 15 LFKRR-HHSVVRDTIFALSSGHGKCGVSVIRTSGPASGDALQLLTGW--KQLPPPRRVTL 71
Query: 76 RNIVDPVSKVVLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYAS 135
+++ P + +LD GL LWF SGP +
Sbjct: 72 TSLLCPTTGELLDRGLVLWF-------------SGPKSF--------------------- 97
Query: 136 LRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPA 195
TGEDCCE+ VHG AV+ +L AL + LRPA
Sbjct: 98 ---------------------------TGEDCCEYHVHGGPAVVMGVLQALGTVQMLRPA 130
Query: 196 EPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILES 255
EPGEF+KRAF N KLDLT+ E LGDLI AETE+QR++AL QM G L QLY +W ++ +
Sbjct: 131 EPGEFTKRAFQNGKLDLTEAEGLGDLIHAETEIQRRQALRQMSGELGQLYQKWSHRLVTA 190
Query: 256 LASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA 315
LA VEA+IDFSED+ +E+N+L +V S+V L +E H++ S + G R+R G+ V+ A
Sbjct: 191 LAHVEAFIDFSEDDNVEENVLTSVDSEVKNLQEELEDHLKDSRR-GERLRDGLHLVLAGA 249
Query: 316 S 316
+
Sbjct: 250 T 250
>gi|260797062|ref|XP_002593523.1| hypothetical protein BRAFLDRAFT_125232 [Branchiostoma floridae]
gi|229278748|gb|EEN49534.1| hypothetical protein BRAFLDRAFT_125232 [Branchiostoma floridae]
Length = 517
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 143/338 (42%), Positives = 198/338 (58%), Gaps = 63/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
HGKCGV+V+RV+GP +A++ + P + R A+L+ + D E LD GL +WFP
Sbjct: 37 HGKCGVAVVRVTGPHASSAVRLLTRRP--VLPAVRRAALKRLYDSTGEP-LDRGLVIWFP 93
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P+SFTGED CEF VHG +V+ ++L AL + GLRPAE GEF+KRAF N KLDLT+ E
Sbjct: 94 GPHSFTGEDSCEFHVHGGPSVVTSLLQALGNMEGLRPAEAGEFTKRAFQNGKLDLTEVEG 153
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL QM+G+L +LYS+W + +L+ +A+VEAYIDFSEDE IE +L+
Sbjct: 154 LADLIHAETEAQRKQALRQMEGDLSRLYSDWSRRLLKCVANVEAYIDFSEDENIEAGVLD 213
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
V +V QL +E+H+ + G R+RSG++ I + + + ++LN V
Sbjct: 214 DVEREVCQLREELERHLS-DGRRGERLRSGVQVAI----------LGKPNVGKSSLLNAV 262
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
CQ+ +IVT +
Sbjct: 263 ------------------------------------------------CQRPAAIVTPVA 274
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +++GGYPV+L DTAGLR T DI+E EG
Sbjct: 275 GTTRDVVESAVNLGGYPVLLSDTAGLR-ETEDIVEQEG 311
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 17 FSRRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLR 76
FS +TIFALSSGHGKCGV+V+RV+GP +A++ + P +P R A+L+
Sbjct: 17 FSSSAHEYGFDSTIFALSSGHGKCGVAVVRVTGPHASSAVRLLTRRP--VLPAVRRAALK 74
Query: 77 NIVDPVSKVVLDEGLCLWFP 96
+ D + LD GL +WFP
Sbjct: 75 RLYDSTGE-PLDRGLVIWFP 93
>gi|193082988|ref|NP_598399.2| tRNA modification GTPase GTPBP3, mitochondrial isoform IV [Homo
sapiens]
Length = 524
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 144/338 (42%), Positives = 195/338 (57%), Gaps = 30/338 (8%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CG++VIR SGP + +AL+ + D ++ R+ASLR + DP S LD L LWFP
Sbjct: 43 QGRCGIAVIRTSGPASGHALRILTAPRDLPLA--RHASLRLLSDPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E
Sbjct: 101 GPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
S G HI + + T
Sbjct: 221 QGGS--TWWWGRKTPHISPQRL------------------------PSLSLSACLLSPTA 254
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+V L ++ H+ + + G R+RSG+ V+ G PN GKSSL+N L +K +SIV+ P
Sbjct: 255 DIEVRALQVALGAHLRDARR-GQRLRSGVHVVVTGPPNAGKSSLVNLLSRKPVSIVSPEP 313
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 314 GTTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 350
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+ + D +P R+ASLR + DP S LD
Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRD--LPLARHASLRLLSDPRSGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|329664338|ref|NP_001193147.1| tRNA modification GTPase GTPBP3, mitochondrial [Bos taurus]
gi|296486093|tpg|DAA28206.1| TPA: GTP binding protein 3 (mitochondrial) [Bos taurus]
Length = 521
Score = 257 bits (656), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 148/340 (43%), Positives = 202/340 (59%), Gaps = 36/340 (10%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CG++VIR SGP + +AL+S+ D ++ R A LR + DP S LD L LWFP
Sbjct: 43 QGRCGIAVIRTSGPASGHALQSLTAPRDLPLA--RKACLRLLSDPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF + KL LT+ E
Sbjct: 101 GPQSFTGEDCAEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLSLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDFSED+ +E+ +L+
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGDLCRGWAETLTKALAHVEAYIDFSEDDNLEEGVLD 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK--SVICLASVEAYIDFSEDEIIEDNILN 335
G E SGI+ V+ L+ + F +
Sbjct: 221 ---------QGGSPWGWEAET-------SGIQPPQVLLLS-----LSFPP---------S 250
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
T S+V +L ++ H+ + + G R+RSG V+ G PN GKSSL+N L +K +SIV+
Sbjct: 251 TADSEVRKLEVALGVHLRDARR-GQRLRSGAHVVVAGPPNAGKSSLVNLLSRKPVSIVSP 309
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
PGTTRDV+E +D+ G+P +L DTAGLR +E EG
Sbjct: 310 EPGTTRDVLETPVDLAGFPALLSDTAGLREGVGP-VEQEG 348
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+S+ D +P R A LR + DP S LD
Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALQSLTAPRD--LPLARKACLRLLSDPRSGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|198431401|ref|XP_002128736.1| PREDICTED: similar to GTP binding protein 3 [Ciona intestinalis]
Length = 544
Score = 257 bits (656), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 146/337 (43%), Positives = 203/337 (60%), Gaps = 62/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GKCGVS+IRVSG + NAL + + + PR A ++ I PVS ++LD L LWFP+
Sbjct: 88 GKCGVSIIRVSGKCSPNALLKLT--KRKSLPGPRKAIVQPIYHPVSNLMLDRSLVLWFPR 145
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED CEFQVHG AVI ++L AL+ + GLRPAE G+++K+AF N KLDLT+ E L
Sbjct: 146 PSSFTGEDVCEFQVHGGPAVIASVLNALSCITGLRPAEAGDYTKQAFLNGKLDLTEVEGL 205
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
GDLI AETE QR++ALHQM+G SLAS+ Y +S +E++
Sbjct: 206 GDLIHAETEAQRRQALHQMEG---------------SLASL--YKGWS-NEVLR------ 241
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
C+A +EA+IDF EDE ++ +I+ +R
Sbjct: 242 ----------------------------------CVAHLEAFIDFEEDEDLDPDIICNIR 267
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ I+ H+ + G R+R G++ I+G+PNVGKSSL+N + Q+ +IV+ IPG
Sbjct: 268 LNTTKMISKIQHHLS-DERRGERLRDGVRVAIIGKPNVGKSSLLNAVTQRPAAIVSPIPG 326
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE LDI G+PV++ DTAGLR + +IE +G
Sbjct: 327 TTRDVIETALDISGFPVLISDTAGLR-RSHGVIEKQG 362
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 49/71 (69%), Gaps = 2/71 (2%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
++TI+A+SSG GKCGVS+IRVSG + NAL + + +P PR A ++ I PVS ++
Sbjct: 77 QSTIYAVSSGFGKCGVSIIRVSGKCSPNALLKLT--KRKSLPGPRKAIVQPIYHPVSNLM 134
Query: 87 LDEGLCLWFPR 97
LD L LWFPR
Sbjct: 135 LDRSLVLWFPR 145
>gi|19335743|gb|AAL85492.1| GTP-binding protein isoform IV [Homo sapiens]
Length = 524
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 144/338 (42%), Positives = 194/338 (57%), Gaps = 30/338 (8%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CG++VIR SGP + +AL+ + D ++ R+ASLR + DP S LD L LWFP
Sbjct: 43 QGRCGIAVIRTSGPASGHALRILTAPRDLPLA--RHASLRLLSDPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E
Sbjct: 101 GPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
S G HI + + T
Sbjct: 221 QGGS--TWWWGRKTPHISPQRL------------------------PSLSLSACLLSPTA 254
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+V L ++ H+ + + G R+RSG V+ G PN GKSSL+N L +K +SIV+ P
Sbjct: 255 DIEVRALQVALGAHLRDARR-GQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPVSIVSPEP 313
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 314 GTTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 350
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+ + D +P R+ASLR + DP S LD
Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRD--LPLARHASLRLLSDPRSGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|410330761|gb|JAA34327.1| GTP binding protein 3 (mitochondrial) [Pan troglodytes]
Length = 524
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 144/338 (42%), Positives = 194/338 (57%), Gaps = 30/338 (8%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CG++VIR SGP + +AL+ + D ++ R+ASLR + DP S LD L LWFP
Sbjct: 43 QGRCGIAVIRTSGPASGHALRILTAPRDLPLA--RHASLRLLSDPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E
Sbjct: 101 GPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
S G HI + + T
Sbjct: 221 QGGS--TWWWGRKTPHISPQRL------------------------PSLSLSACLLSPTA 254
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+V L ++ H+ + + G R+RSG V+ G PN GKSSL+N L +K +SIV+ P
Sbjct: 255 DIKVRALEVALGAHLRDARR-GQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPVSIVSPEP 313
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 314 GTTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 350
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+ + D +P R+ASLR + DP S LD
Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRD--LPLARHASLRLLSDPRSGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|332373472|gb|AEE61877.1| unknown [Dendroctonus ponderosae]
Length = 501
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 144/337 (42%), Positives = 192/337 (56%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GKCGV+VIRVSGP+ A+ + +++ +PR LR+I P+S ++D+GL LW P
Sbjct: 35 GKCGVAVIRVSGPEAGTAISKLTTL--KELPQPRTVVLRSIKHPISNELIDKGLILWLPG 92
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED EF VHG +AVIN +L AL +P + AEPGEF++RAF N KLDLT+ E L
Sbjct: 93 PRSFTGEDSSEFHVHGGVAVINGLLDALASMPKFKLAEPGEFTRRAFSNGKLDLTEVEGL 152
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL+QAETE QR
Sbjct: 153 ADLLQAETEAQR------------------------------------------------ 164
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+ ++Q GS+ K E R +K + A++EA+IDF E E +ED +++ V
Sbjct: 165 -KQALLQADGSLSKLYE-------NWRHVLKHSV--ANLEAHIDFEETETLEDGLVDNVV 214
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L I KH+ K G +R G+K+VI+GEPNVGKSSL+N LCQ+ SIVT I G
Sbjct: 215 KNIEVLSADINKHMRDGRK-GEILRRGVKAVILGEPNVGKSSLLNLLCQRPASIVTPISG 273
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVI+ L+I GYP++L DTAGLR + D+IE EG
Sbjct: 274 TTRDVIQVTLNIQGYPLVLSDTAGLRKDSQDVIELEG 310
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 136/297 (45%), Gaps = 88/297 (29%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFALSSG GKCGV+VIRVSGP+ A+ + +++P+PR LR+I P+S ++
Sbjct: 25 STIFALSSGLGKCGVAVIRVSGPEAGTAISKLTTL--KELPQPRTVVLRSIKHPISNELI 82
Query: 88 DEGLCLWFPR------------HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYAS 135
D+GL LW P H GV+VI L+AL SM P++
Sbjct: 83 DKGLILWLPGPRSFTGEDSSEFHVHGGVAVIN----GLLDALASM----------PKFK- 127
Query: 136 LRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPA 195
+P FT A N L LT++ GL
Sbjct: 128 --------------------LAEPGEFTRR-----------AFSNGKLD-LTEVEGLA-- 153
Query: 196 EPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILES 255
DL Q E TE QR++AL Q G+L +LY WR ++ S
Sbjct: 154 ---------------DLLQAE---------TEAQRKQALLQADGSLSKLYENWRHVLKHS 189
Query: 256 LASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
+A++EA+IDF E E +ED +++ V + L I KH+ K G +R G+K+VI
Sbjct: 190 VANLEAHIDFEETETLEDGLVDNVVKNIEVLSADINKHMRDGRK-GEILRRGVKAVI 245
>gi|345486046|ref|XP_001606101.2| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
[Nasonia vitripennis]
Length = 500
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 145/338 (42%), Positives = 193/338 (57%), Gaps = 63/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
GKCGV+V+R+SG D A++ M + PR A LRNI +P + +D+GLCLWFP
Sbjct: 42 QGKCGVAVVRISGTDARLAIEKMTNIAKLE---PRKAYLRNIRNPQTGETIDKGLCLWFP 98
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
PNSFTGED EFQVHG +AV+ +++ AL++L +PA PGEF+KRAFF++KLDLT+ E
Sbjct: 99 GPNSFTGEDSVEFQVHGGVAVLASLMSALSQLQ-FQPALPGEFTKRAFFHDKLDLTEIEG 157
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q GNL LYS WR ++L+ LA +EAYIDF E+E IE +
Sbjct: 158 LADLIHAETEQQRKQALLQAHGNLSALYSSWRAILLKCLAHIEAYIDFGEEENIESQVFE 217
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+ L IEKH+ K G +R+GI++VI E + + ++LN
Sbjct: 218 QCNIDLKDLTKQIEKHLSDGRK-GEILRNGIRTVI----------LGEPNVGKSSLLN-- 264
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
++VQ + +I VTSIP
Sbjct: 265 --RLVQRNAAI--------------------------------------------VTSIP 278
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +I GYP++L DTAGL T DIIE EG
Sbjct: 279 GTTRDVVELTANISGYPIVLADTAGLNKLTEDIIEIEG 316
>gi|340373889|ref|XP_003385472.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
[Amphimedon queenslandica]
Length = 492
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 151/338 (44%), Positives = 201/338 (59%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
GKCGV+VIRVSGP + + ++ + + + KPR A+LR + DP+S ++D GL +WFP
Sbjct: 32 QGKCGVAVIRVSGPRASDVILNLGQF--KSLPKPRAATLRRLRDPLSGDIIDHGLSIWFP 89
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
PNSFTGEDC EF VHG AVI+++L +L+ LPGL+ AEPG+F+KRA N KLDLT+ E
Sbjct: 90 GPNSFTGEDCVEFHVHGGKAVISSVLNSLSSLPGLKHAEPGDFTKRALLNGKLDLTEVEG 149
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL +Q+ + +L Y +SE
Sbjct: 150 LSDLIHAETEAQRKQAL-------RQMKGDLSKL----------YNGWSE---------- 182
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
S +KS LA+VEA IDF EDE IE+ +L V
Sbjct: 183 ----------------------------SLLKS---LANVEAIIDFGEDENIEEGLLEQV 211
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
Q+ +L I+ H++ + G R+RSGI+ I+G PN GKSSL+N LCQ+ +IV+
Sbjct: 212 CRQIEELSKEIQSHLQ-DGRRGERLRSGIQVTIIGAPNAGKSSLLNILCQRPAAIVSPYA 270
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE LDI GYPV++ DTAGLR SD +E EG
Sbjct: 271 GTTRDVIESSLDISGYPVVISDTAGLR-QVSDPVEKEG 307
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+T+FALSSG GKCGV+VIRVSGP + + ++ + + +PKPR A+LR + DP+S ++
Sbjct: 23 DTVFALSSGQGKCGVAVIRVSGPRASDVILNLGQF--KSLPKPRAATLRRLRDPLSGDII 80
Query: 88 DEGLCLWFP 96
D GL +WFP
Sbjct: 81 DHGLSIWFP 89
>gi|440799076|gb|ELR20137.1| tRNA modification GTPase TrmE, putative [Acanthamoeba castellanii
str. Neff]
Length = 525
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 145/344 (42%), Positives = 193/344 (56%), Gaps = 64/344 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V+R+SG A++ + Q++ PR ASLR + + +LDEGL LWFP
Sbjct: 84 GKSGVAVVRISGERAGAAVRQLTRA--QELPPPRLASLRKLYH--RDELLDEGLVLWFPG 139
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E +HGS A I A+L AL KLPG+R AEPGEF+KRAF N K+DLT+ E L
Sbjct: 140 PRSFTGEDMAELHIHGSHAAITAVLNALGKLPGMRSAEPGEFTKRAFQNGKMDLTEAEGL 199
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AETE QR++AL QM G L + + N
Sbjct: 200 ADLIDAETEAQRKQALRQMGGALGR-------------------------------LCNE 228
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R ++++ C+A VEA IDF EDE I+ + V+
Sbjct: 229 WREELIK---------------------------CIAHVEAVIDFGEDEHIDHEVAAAVQ 261
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ +LH I H+ S++ G R+RSG IVG PN GKSSL+N L +++ +IV+SIPG
Sbjct: 262 PRIKRLHDMIALHLSDSHR-GERMRSGASLAIVGPPNAGKSSLLNLLARRKAAIVSSIPG 320
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKNN 442
TTRDVIE LD+ GYP+ + DTAG+R + D IE EG L +
Sbjct: 321 TTRDVIEVSLDLAGYPLTIADTAGIR-HSEDEIEKEGVALARER 363
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Query: 28 NTIFAL-SSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
+IFAL +S GK GV+V+R+SG A++ + Q++P PR ASLR + +
Sbjct: 73 ESIFALGTSPAGKSGVAVVRISGERAGAAVRQLTRA--QELPPPRLASLRKLYH--RDEL 128
Query: 87 LDEGLCLWFP 96
LDEGL LWFP
Sbjct: 129 LDEGLVLWFP 138
>gi|170058589|ref|XP_001864986.1| tRNA modification GTPase GTPBP3, mitochondrial [Culex
quinquefasciatus]
gi|167877662|gb|EDS41045.1| tRNA modification GTPase GTPBP3, mitochondrial [Culex
quinquefasciatus]
Length = 490
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 141/337 (41%), Positives = 192/337 (56%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GKCGV+VIRVSG + + + K+ R A LR IV + ++D GL LWFP
Sbjct: 30 GKCGVAVIRVSGDASSDVVHRKT--SSNKLPAARQAVLRRIVHSRTAEMIDRGLVLWFPG 87
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGEDC EF VHG AV++A+ +L + G+R AEPGEF+KRAF+ K+DLT+ E L
Sbjct: 88 PHSFTGEDCVEFHVHGGAAVVSAMYDSLGSIDGVRLAEPGEFTKRAFYAGKMDLTEVEGL 147
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI+AETE QR++AL Q G L +LY+E R ++ +A+VEAYIDF+ED+ ++D +L +
Sbjct: 148 ADLIEAETEAQRKQALLQASGELSKLYNEMRSRLVRCIANVEAYIDFAEDQDVDDTVLQS 207
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
V V L I H+ ++ G R+R+G+++ I A N +
Sbjct: 208 VGEDVATLVRDISTHLN-DHRRGERLRAGVRTAIIGAP------------------NVGK 248
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S V L LSN +++SIVT++ G
Sbjct: 249 SSFVNL---------LSN-------------------------------RKVSIVTNVAG 268
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE H DIGGYPVIL DTAGLR +T DI+E EG
Sbjct: 269 TTRDIIESHHDIGGYPVILADTAGLRASTDDIVEIEG 305
>gi|157104146|ref|XP_001648272.1| GTP binding protein (mitochondrial), putative [Aedes aegypti]
gi|108880387|gb|EAT44612.1| AAEL004007-PA [Aedes aegypti]
Length = 493
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 141/339 (41%), Positives = 198/339 (58%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVS--KPRYASLRNIVDPVSEVVLDEGLCLWF 156
GKCGV+V+RVSG +A + + Q V+ +PR A LR I + ++D+GL LWF
Sbjct: 32 GKCGVAVVRVSG----DACRDVMKIKTQSVTLPEPRKAVLRRIFHSKTTEMIDKGLVLWF 87
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P PNSFTGED EF VHG +AV++A+ +L + G+R AEPGEF+KRAF+ K+DLT+ E
Sbjct: 88 PGPNSFTGEDSVEFHVHGGVAVVSAMYDSLGSIDGVRLAEPGEFTKRAFYAGKMDLTEVE 147
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
L DLI+AETE QR++A+ Q G L ++Y+E R +L +A++EAYIDF+ED+ + D++
Sbjct: 148 GLADLIEAETEAQRKQAMLQANGELSKVYNELRNRLLRCIANIEAYIDFAEDQDVGDDVF 207
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
+V++ V + ++ H+ + G R+RSG+++VI A N
Sbjct: 208 ESVKTDVASIIVDVKAHLN-DQRRGERLRSGVRTVIIGAP------------------NV 248
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+S V L LSN +++SIVT++
Sbjct: 249 GKSSFVNL---------LSN-------------------------------RKVSIVTNV 268
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRD+IE H DIGGYPVIL DTAGLR TSDIIE EG
Sbjct: 269 AGTTRDIIESHHDIGGYPVILADTAGLRKETSDIIEHEG 307
>gi|307172923|gb|EFN64090.1| tRNA modification GTPase GTPBP3, mitochondrial [Camponotus
floridanus]
Length = 510
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 142/347 (40%), Positives = 197/347 (56%), Gaps = 67/347 (19%)
Query: 91 LCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSK--PRYASLRNIVDPVSEVVL 148
+C GKCGV+V+R+SG +L ALK M +SK PR A LR I DP +E V+
Sbjct: 47 ICALSSGRGKCGVAVVRLSGSRSLEALKRMT-----NISKLVPRTAFLRKIRDPETEEVI 101
Query: 149 DEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNN 208
D GLCLWFP P+SFTGED EF VHG A++ ++ AL+KL + PA PGEF++RAF+NN
Sbjct: 102 DNGLCLWFPGPHSFTGEDSVEFHVHGGTAILTRLMQALSKLQ-VHPALPGEFTRRAFYNN 160
Query: 209 KLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSED 268
KLDLT+ E L DLI+AETE QR++AL Q G L +LY WR+++ ES+AS+EAYIDF E+
Sbjct: 161 KLDLTEVEGLADLIEAETECQRKQALLQADGVLHKLYDGWRKVLSESVASIEAYIDFGEE 220
Query: 269 EIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI 328
+ IE +++ + QL +E+H+ + G +R+GI++VI E +
Sbjct: 221 DNIESDVVQRAHDALRQLVRDLEEHLA-DGRRGEILRNGIRTVIV----------GEPNV 269
Query: 329 IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQK 388
+ ++LN +VQ + +I
Sbjct: 270 GKSSLLN----HLVQRNAAI---------------------------------------- 285
Query: 389 QISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
VT + GTTRDVIE +I GYPV++ DTAG+ T DI+E EG
Sbjct: 286 ----VTPVAGTTRDVIELSANISGYPVLIADTAGITNNTKDIVEVEG 328
>gi|322789734|gb|EFZ14900.1| hypothetical protein SINV_07474 [Solenopsis invicta]
Length = 458
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 140/340 (41%), Positives = 195/340 (57%), Gaps = 67/340 (19%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSK--PRYASLRNIVDPVSEVVLDEGLCLW 155
HGKCGV+V+R+SG +L ALK M +SK PR A LR I DP + V+D GLCLW
Sbjct: 2 HGKCGVAVVRISGSRSLEALKRMT-----SISKLEPRRAFLRKIRDPKTGEVIDNGLCLW 56
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
FP P SFTGED EF VHG A++ ++ L+KL ++PA PGEF++RAF+NNKLDLT+
Sbjct: 57 FPGPYSFTGEDSVEFHVHGGSAILTRLMQVLSKLQ-VQPALPGEFTRRAFYNNKLDLTEV 115
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
E L DLI+AETE QR++AL Q G L++LY WR+++ ES+AS+EAYIDF E++ IE ++
Sbjct: 116 EGLADLIEAETECQRKQALLQADGILRKLYDNWRKVLSESVASIEAYIDFGEEDNIESDV 175
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILN 335
+ + QL +E+H+ + G +R+G+++VI E + + ++LN
Sbjct: 176 VQNAHHALRQLMRDLEEHLA-DGRRGEILRNGVRTVI----------VGEPNVGKSSLLN 224
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+VQ + +I VT
Sbjct: 225 ----HLVQRNAAI--------------------------------------------VTP 236
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I GTTRDVIE +I GYPV++ DTAG+ T DI+E EG
Sbjct: 237 IAGTTRDVIELTANISGYPVLIADTAGITDDTGDIVEAEG 276
>gi|348556860|ref|XP_003464238.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
[Cavia porcellus]
Length = 564
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 139/338 (41%), Positives = 186/338 (55%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
HG+CGV+VIR SGP +L AL+S+ + + +PR ASLR + DP S LD L LWFP
Sbjct: 115 HGRCGVAVIRTSGPSSLKALQSLTA--PRALPRPRRASLRLLSDPRSGAPLDRALVLWFP 172
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV+N +L AL +PGLRPAE GEF++RAF + KL L + E
Sbjct: 173 GPRSFTGEDCAEFHVHGGPAVVNGVLEALGGVPGLRPAEAGEFTRRAFAHGKLSLPEVEG 232
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L QL W + + ++LA VEAYIDF+ED+ +E+ +L
Sbjct: 233 LADLIHAETEAQRRQALRQLDGELGQLSRGWAETLTKALAHVEAYIDFAEDDNLEEGVLE 292
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+V L ++ H++ + + G R+RSG V+ N
Sbjct: 293 QADREVQALELALGMHLQDARR-GQRLRSGAHVVVA------------------GPPNAG 333
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K +SIV+S P
Sbjct: 334 KSSLVNL---------LSQK-------------------------------PVSIVSSEP 353
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+P +L DTAGLR +E EG
Sbjct: 354 GTTRDVLETPVDLAGFPALLSDTAGLREGVGP-VEQEG 390
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 19 RRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNI 78
R C+ A TIFALSSGHG+CGV+VIR SGP +L AL+S+ + +P+PR ASLR +
Sbjct: 99 RLCT--APGATIFALSSGHGRCGVAVIRTSGPSSLKALQSLTA--PRALPRPRRASLRLL 154
Query: 79 VDPVSKVVLDEGLCLWFP 96
DP S LD L LWFP
Sbjct: 155 SDPRSGAPLDRALVLWFP 172
>gi|379712893|ref|YP_005301232.1| tRNA modification GTPase TrmE [Rickettsia philipii str. 364D]
gi|376329538|gb|AFB26775.1| tRNA modification GTPase TrmE [Rickettsia philipii str. 364D]
Length = 445
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 138/337 (40%), Positives = 188/337 (55%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGP +L L+ + D K R + I P ++ ++D + ++F
Sbjct: 12 GKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELIDNVMVVYFKS 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E HGS A+ + AL + G+R AE GEF+KRAF NNKLDLT TE +
Sbjct: 69 PGSFTGEDVVEIHTHGSKAISIMLTNALLNIAGIRLAEAGEFTKRAFLNNKLDLTATEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q ++A+ Q G L+ LY+ W
Sbjct: 129 ADLINAETIMQHKQAIRQASGKLEALYNNW------------------------------ 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RSQ++++ L+ +EAYIDF DE I D +LN V
Sbjct: 159 -RSQLLKI---------------------------LSLLEAYIDFP-DEDIPDTVLNEVT 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L +I +++ N+ G +RSG+K I+G PNVGKSSL+NFL Q+ I+IV++I G
Sbjct: 190 NTHTILVNTISEYLN-DNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+R +SDIIE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEG 285
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + D K R + I P +K ++D
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELID 59
Query: 89 EGLCLWFPRHG 99
+ ++F G
Sbjct: 60 NVMVVYFKSPG 70
>gi|390334828|ref|XP_781610.3| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
[Strongylocentrotus purpuratus]
Length = 603
Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 149/338 (44%), Positives = 189/338 (55%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
HGKCGV+V+RVSGP M ++ + R A L I DP + ++D GL LWF
Sbjct: 105 HGKCGVAVVRVSGPRANVVFDKMIL--SKRAIETRQAVLSPIYDPTTNELIDHGLILWFT 162
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGED CE QVHG AVI A+ GAL KL G AEPGEFSKRAF+N KLDLT+ E
Sbjct: 163 GPKSFTGEDVCELQVHGGPAVIAALYGALGKLDGFHLAEPGEFSKRAFYNGKLDLTEVEG 222
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L G+L Q +E ++
Sbjct: 223 L--------------------GDLIQAETEAQR--------------------------- 235
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+ V Q+ G + K E G R R I++V A VEA+IDFSEDE IE+ +L
Sbjct: 236 --QQAVRQMSGVLSKLYE-----GWRGRL-IRTV---AHVEAFIDFSEDENIEEGVLEEA 284
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
R +V QL + +H++ S K G R+RSG+ I G+PNVGKS+L+N LCQ+ +IV+ I
Sbjct: 285 RQEVEQLLTEVRRHLQDSRK-GERLRSGVHVTIAGQPNVGKSTLLNALCQRPAAIVSPIA 343
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E L+IGGYPVIL DTAG+R + D IE EG
Sbjct: 344 GTTRDVVESSLNIGGYPVILSDTAGIRESL-DEIEREG 380
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 118/287 (41%), Positives = 151/287 (52%), Gaps = 64/287 (22%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
+ TIFAL+SGHGKCGV+V+RVSGP M ++ + R A L I DP + +
Sbjct: 95 QRTIFALASGHGKCGVAVVRVSGPRANVVFDKMIL--SKRAIETRQAVLSPIYDPTTNEL 152
Query: 87 LDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEV 146
+D GL LWF +GP +
Sbjct: 153 IDHGLILWF-------------TGPKSFTG------------------------------ 169
Query: 147 VLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFF 206
E +C E QVHG AVI A+ GAL KL G AEPGEFSKRAF+
Sbjct: 170 ---EDVC---------------ELQVHGGPAVIAALYGALGKLDGFHLAEPGEFSKRAFY 211
Query: 207 NNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFS 266
N KLDLT+ E LGDLIQAETE QRQ+A+ QM G L +LY WR ++ ++A VEA+IDFS
Sbjct: 212 NGKLDLTEVEGLGDLIQAETEAQRQQAVRQMSGVLSKLYEGWRGRLIRTVAHVEAFIDFS 271
Query: 267 EDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
EDE IE+ +L R +V QL + +H++ S K G R+RSG+ I
Sbjct: 272 EDENIEEGVLEEARQEVEQLLTEVRRHLQDSRK-GERLRSGVHVTIA 317
>gi|195450224|ref|XP_002072419.1| GK22335 [Drosophila willistoni]
gi|194168504|gb|EDW83405.1| GK22335 [Drosophila willistoni]
Length = 507
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/345 (40%), Positives = 187/345 (54%), Gaps = 66/345 (19%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVS-------KPRYASLRNIVDPVSEVVLDE 150
H KCGVSVIR+SGP T AL+++ + KPR A L++ PVS+ ++D
Sbjct: 34 HVKCGVSVIRLSGPRTKQALRAIIASGSKNTQNGFEFEPKPRQAYLKSFYHPVSKEMIDR 93
Query: 151 GLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKL 210
GL LWFP P SFTGED CEFQVHGS+AVI A+L AL + GLRPAEPGEF+KRAFF KL
Sbjct: 94 GLLLWFPGPASFTGEDSCEFQVHGSLAVIAAMLDALGQCDGLRPAEPGEFTKRAFFGGKL 153
Query: 211 DLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEI 270
DLT+ E L DLI AETE QR++AL Q G L +LY WR+ ++ A +EAYIDF+E+E
Sbjct: 154 DLTEVEGLADLIHAETEAQRKQALLQSTGALARLYDSWRKRLIRCAAHLEAYIDFAEEEQ 213
Query: 271 IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIE 330
IE ++ + ++ + I H+ + G +R G+++ I A + +
Sbjct: 214 IEGGVILQLTRELNTVKAEIRDHLN-DQRQGELLRDGVRTCIVGAP----------NVGK 262
Query: 331 DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQI 390
++LN + C +SV + P G
Sbjct: 263 SSLLNML--------------------CQ-------RSVSIVTPQAG------------- 282
Query: 391 SIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE + GGYPV+ DTAGLR TSD IE EG
Sbjct: 283 --------TTRDIIETMHNFGGYPVVFADTAGLRRQTSDAIELEG 319
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 49/75 (65%), Gaps = 7/75 (9%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKV-------PKPRYASLRNIVDP 81
TI++LSSGH KCGVSVIR+SGP T AL+++ + PKPR A L++ P
Sbjct: 26 TIYSLSSGHVKCGVSVIRLSGPRTKQALRAIIASGSKNTQNGFEFEPKPRQAYLKSFYHP 85
Query: 82 VSKVVLDEGLCLWFP 96
VSK ++D GL LWFP
Sbjct: 86 VSKEMIDRGLLLWFP 100
>gi|157829012|ref|YP_001495254.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165933734|ref|YP_001650523.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. Iowa]
gi|378721823|ref|YP_005286710.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. Colombia]
gi|378723168|ref|YP_005288054.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. Arizona]
gi|378724522|ref|YP_005289406.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. Hauke]
gi|379015931|ref|YP_005292166.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. Brazil]
gi|379018308|ref|YP_005294543.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. Hino]
gi|379019623|ref|YP_005295857.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. Hlp#2]
gi|166234817|sp|A8GTM1.1|MNME_RICRS RecName: Full=tRNA modification GTPase MnmE
gi|189036206|sp|B0BV57.1|MNME_RICRO RecName: Full=tRNA modification GTPase MnmE
gi|157801493|gb|ABV76746.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165908821|gb|ABY73117.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Rickettsia rickettsii str. Iowa]
gi|376324455|gb|AFB21695.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. Brazil]
gi|376326847|gb|AFB24086.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. Colombia]
gi|376328192|gb|AFB25430.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. Arizona]
gi|376330874|gb|AFB28110.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. Hino]
gi|376332203|gb|AFB29437.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. Hlp#2]
gi|376333537|gb|AFB30770.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. Hauke]
Length = 445
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/337 (40%), Positives = 187/337 (55%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGP +L L+ + D K R + I P ++ ++D + ++F
Sbjct: 12 GKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELIDNVMVVYFKS 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E HGS A+ + AL + G+R AE GEF+KRAF NNKLDLT E +
Sbjct: 69 PGSFTGEDVVEIHTHGSKAISIMLTNALLNIAGIRLAEAGEFTKRAFLNNKLDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q ++A+ Q G L+ LY+ W
Sbjct: 129 ADLINAETIMQHKQAIRQASGKLEALYNNW------------------------------ 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RSQ++++ L+ +EAYIDF DE I D +LN V
Sbjct: 159 -RSQLLKI---------------------------LSLLEAYIDFP-DEDIPDTVLNEVT 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L +I +++ N+ G +RSG+K I+G PNVGKSSL+NFL Q+ I+IV++I G
Sbjct: 190 NTHTILVNTISEYLN-DNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+R +SDIIE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEG 285
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + D K R + I P +K ++D
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELID 59
Query: 89 EGLCLWFPRHG 99
+ ++F G
Sbjct: 60 NVMVVYFKSPG 70
>gi|220921039|ref|YP_002496340.1| tRNA modification GTPase TrmE [Methylobacterium nodulans ORS 2060]
gi|219945645|gb|ACL56037.1| tRNA modification GTPase TrmE [Methylobacterium nodulans ORS 2060]
Length = 434
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 131/337 (38%), Positives = 179/337 (53%), Gaps = 62/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ V+V+R+SGP AL+++ Q PR SLR +V P S +LD L W P
Sbjct: 13 GRAAVAVVRISGPGAAAALEALT---RQPPPPPRRLSLRTLVAPGSGEILDRALVAWMPA 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FTGED E Q+HG AV A+L AL LPGL PAEPG F++RAF N ++DLT+ E L
Sbjct: 70 PGTFTGEDSVELQLHGGPAVRAAVLRALAHLPGLAPAEPGAFTRRAFLNGRMDLTEVEGL 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AETE QR++A+ Q+ G L +L +WR +L+ LA EA +DFS++ ++ L T
Sbjct: 130 ADLIDAETEAQRRQAMRQLDGALSRLVEDWRATLLDVLAMTEAALDFSDEGDVDAETLTT 189
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R+R GI S +
Sbjct: 190 A-----------------GLAAATRVRDGILSALA------------------------- 207
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + G R+R G+ V+ G PN GKS+L+N L ++ +IV++IPG
Sbjct: 208 ----------------NGRRGERLREGLMVVLAGAPNAGKSTLLNALARRDAAIVSAIPG 251
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD IE D+GG PV+L+DTAGLR + D IE EG
Sbjct: 252 TTRDAIEVRCDLGGLPVMLVDTAGLRESV-DAIEVEG 287
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 8/131 (6%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFA +SG G+ V+V+R+SGP AL+++ Q P PR SLR +V P S +L
Sbjct: 3 DTIFAPASGFGRAAVAVVRISGPGAAAALEALT---RQPPPPPRRLSLRTLVAPGSGEIL 59
Query: 88 DEGLCLWFPRHGK-CGVSVIRV---SGPDTLNA-LKSMACYPDQKVSKPRYASLRNIVDP 142
D L W P G G + + GP A L+++A P ++P + R ++
Sbjct: 60 DRALVAWMPAPGTFTGEDSVELQLHGGPAVRAAVLRALAHLPGLAPAEPGAFTRRAFLNG 119
Query: 143 VSEVVLDEGLC 153
++ EGL
Sbjct: 120 RMDLTEVEGLA 130
>gi|15893098|ref|NP_360812.1| tRNA modification GTPase TrmE [Rickettsia conorii str. Malish 7]
gi|21363014|sp|Q92GE8.1|MNME_RICCN RecName: Full=tRNA modification GTPase MnmE
gi|15620303|gb|AAL03713.1| possible thiophene and furan oxidation protein thdF [Rickettsia
conorii str. Malish 7]
Length = 445
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 136/337 (40%), Positives = 186/337 (55%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGP +L L+ + D K R + I P ++ ++D + ++F
Sbjct: 12 GKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELIDNVMVVYFKS 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E HGS A+ + AL + G+R AE GEF+KRAF NNK DLT E +
Sbjct: 69 PGSFTGEDVVEIHTHGSKAISIMLTNALLNIAGIRLAEAGEFTKRAFLNNKFDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q ++A+ Q G L+ LY+ W
Sbjct: 129 ADLINAETIMQHKQAIRQASGKLEALYNNW------------------------------ 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RSQ++++ L+ +EAYIDF DE I D +LN V
Sbjct: 159 -RSQLLKM---------------------------LSLLEAYIDFP-DEDIPDTVLNEVT 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L +I +++ N+ G +RSG+K I+G PNVGKSSL+NFL Q+ I+IV++I G
Sbjct: 190 NTHTILVNTISEYLN-DNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+R +SDIIE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEG 285
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + D K R + I P +K ++D
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELID 59
Query: 89 EGLCLWFPRHGK-CGVSVIRV 108
+ ++F G G V+ +
Sbjct: 60 NVMVVYFKSPGSFTGEDVVEI 80
>gi|383482645|ref|YP_005391559.1| tRNA modification GTPase TrmE [Rickettsia montanensis str. OSU
85-930]
gi|378934999|gb|AFC73500.1| tRNA modification GTPase TrmE [Rickettsia montanensis str. OSU
85-930]
Length = 445
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 135/337 (40%), Positives = 187/337 (55%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGP +L L+ + D K R + I P ++ ++D + ++F
Sbjct: 12 GKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELIDNVMVVYFKS 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E HGS A+ + AL + G+R AE GEF+KRAF NNK DLT E +
Sbjct: 69 PGSFTGEDVVEIHTHGSKAISIMLTNALLNIAGIRLAEAGEFTKRAFLNNKFDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q ++A+ Q G L++LY+ W
Sbjct: 129 ADLINAETIMQHKQAIRQASGKLEELYNNW------------------------------ 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RSQ++++ ++ +EAYIDF DE I D +LN V
Sbjct: 159 -RSQLLKI---------------------------ISLLEAYIDFP-DEDIPDTVLNEVT 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L +I +++ N+ G +RSG+K I+G PNVGKSSL+NFL Q+ I+IV++I G
Sbjct: 190 NTHTILVNTISEYLN-DNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+R +SDIIE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEG 285
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + D K R + I P +K ++D
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELID 59
Query: 89 EGLCLWFPRHG 99
+ ++F G
Sbjct: 60 NVMVVYFKSPG 70
>gi|405966611|gb|EKC31873.1| tRNA modification GTPase GTPBP3, mitochondrial [Crassostrea gigas]
Length = 467
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 134/305 (43%), Positives = 179/305 (58%), Gaps = 60/305 (19%)
Query: 131 PRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLP 190
PR LR I D ++ +D GL +WFP P SFTGEDC EFQVHG AVI A++ +L KLP
Sbjct: 10 PRSTQLRRIRDTGTKEPIDRGLVIWFPSPESFTGEDCVEFQVHGGPAVIAAMVTSLGKLP 69
Query: 191 GLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQ 250
R AEPGEF+KRAF N KLDLT+ E LGDLI AETE+QR++A L+Q+ + +
Sbjct: 70 SYRHAEPGEFTKRAFMNGKLDLTEVEGLGDLIHAETEVQRKQA-------LRQMEGDLGK 122
Query: 251 LILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKS 310
L Y D+ ++
Sbjct: 123 L----------YTDWRN-----------------------------------------RA 131
Query: 311 VICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 370
+ +A+VEA+IDFSE + +E+++L V ++V +L I H+ ++ G R+R G+ VI
Sbjct: 132 MKAVANVEAFIDFSESDTLEEDLLCEVTAEVDRLWKEITTHLS-DHRRGERLREGVHVVI 190
Query: 371 VGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
VG PNVGKSSL+N LCQ+ +IV+ IPGTTRD++E L++GGYPV+L DTAGLR T D
Sbjct: 191 VGRPNVGKSSLLNSLCQRPAAIVSPIPGTTRDIVETALNVGGYPVLLSDTAGLR-ETEDF 249
Query: 431 IETEG 435
IE EG
Sbjct: 250 IEKEG 254
>gi|34581226|ref|ZP_00142706.1| possible thiophene and furan oxidation protein thdF [Rickettsia
sibirica 246]
gi|229587120|ref|YP_002845621.1| tRNA modification GTPase TrmE [Rickettsia africae ESF-5]
gi|383484480|ref|YP_005393393.1| tRNA modification GTPase TrmE [Rickettsia parkeri str. Portsmouth]
gi|28262611|gb|EAA26115.1| possible thiophene and furan oxidation protein thdF [Rickettsia
sibirica 246]
gi|228022170|gb|ACP53878.1| tRNA modification GTPase TrmE [Rickettsia africae ESF-5]
gi|378936834|gb|AFC75334.1| tRNA modification GTPase TrmE [Rickettsia parkeri str. Portsmouth]
Length = 445
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 135/337 (40%), Positives = 186/337 (55%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGP +L L+ + D K R + I P ++ ++D + ++F
Sbjct: 12 GKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELIDNVMVVYFKS 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E HGS A+ + AL + G+R AE GEF+KRAF NNK DLT E +
Sbjct: 69 PGSFTGEDVVEIHTHGSKAISIMLTNALLNIAGIRLAEAGEFTKRAFLNNKFDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q ++A+ Q G L+ LY+ W
Sbjct: 129 ADLINAETIMQHKQAIRQASGKLEALYNNW------------------------------ 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RSQ++++ ++ +EAYIDF DE I D +LN V
Sbjct: 159 -RSQLLKM---------------------------ISLLEAYIDFP-DEDIPDTVLNEVT 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L +I +++ N+ G +RSG+K I+G PNVGKSSL+NFL Q+ I+IV++I G
Sbjct: 190 NTHTILVNTISEYLN-DNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+R +SDIIE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEG 285
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + D K R + I P +K ++D
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELID 59
Query: 89 EGLCLWFPRHG 99
+ ++F G
Sbjct: 60 NVMVVYFKSPG 70
>gi|341584334|ref|YP_004764825.1| tRNA modification GTPase TrmE [Rickettsia heilongjiangensis 054]
gi|350273888|ref|YP_004885201.1| tRNA modification GTPase [Rickettsia japonica YH]
gi|374319729|ref|YP_005066228.1| tRNA modification GTPase TrmE [Rickettsia slovaca 13-B]
gi|383751802|ref|YP_005426903.1| tRNA modification GTPase TrmE [Rickettsia slovaca str. D-CWPP]
gi|340808559|gb|AEK75147.1| tRNA modification GTPase TrmE [Rickettsia heilongjiangensis 054]
gi|348593101|dbj|BAK97062.1| tRNA modification GTPase [Rickettsia japonica YH]
gi|360042278|gb|AEV92660.1| tRNA modification GTPase TrmE [Rickettsia slovaca 13-B]
gi|379774816|gb|AFD20172.1| tRNA modification GTPase TrmE [Rickettsia slovaca str. D-CWPP]
Length = 445
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 135/337 (40%), Positives = 186/337 (55%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGP +L L+ + D K R + I P ++ ++D + ++F
Sbjct: 12 GKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELIDNVMVVYFKS 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E HGS A+ + AL + G+R AE GEF+KRAF NNK DLT E +
Sbjct: 69 PGSFTGEDVVEIHTHGSKAISIMLTNALLNIAGIRLAEAGEFTKRAFLNNKFDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q ++A+ Q G L+ LY+ W
Sbjct: 129 ADLINAETIMQHKQAIRQASGKLEALYNNW------------------------------ 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RSQ++++ ++ +EAYIDF DE I D +LN V
Sbjct: 159 -RSQLLKI---------------------------ISLLEAYIDFP-DEDIPDTVLNEVT 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L +I +++ N+ G +RSG+K I+G PNVGKSSL+NFL Q+ I+IV++I G
Sbjct: 190 NTHTILVNTISEYLN-DNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+R +SDIIE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEG 285
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + D K R + I P +K ++D
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELID 59
Query: 89 EGLCLWFPRHG 99
+ ++F G
Sbjct: 60 NVMVVYFKSPG 70
>gi|238650604|ref|YP_002916456.1| tRNA modification GTPase TrmE [Rickettsia peacockii str. Rustic]
gi|238624702|gb|ACR47408.1| tRNA modification GTPase TrmE [Rickettsia peacockii str. Rustic]
Length = 445
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 135/337 (40%), Positives = 186/337 (55%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGP +L L+ + D K R + I P ++ ++D + ++F
Sbjct: 12 GKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELIDNVMVVYFKS 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E HGS A+ + AL + G+R AE GEF+KRAF NNK DLT E +
Sbjct: 69 PGSFTGEDVVEIHTHGSKAISIMLTNALLNIAGIRLAEAGEFTKRAFLNNKFDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q ++A+ Q G L+ LY+ W
Sbjct: 129 ADLINAETIMQHKQAIRQASGKLEALYNNW------------------------------ 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RSQ++++ ++ +EAYIDF DE I D +LN V
Sbjct: 159 -RSQLLKI---------------------------ISLLEAYIDFP-DEDIPDTVLNEVT 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L +I +++ N+ G +RSG+K I+G PNVGKSSL+NFL Q+ I+IV++I G
Sbjct: 190 NTHTILVNTISEYLN-DNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+R +SDIIE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEG 285
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + D K R + I P +K ++D
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELID 59
Query: 89 EGLCLWFPRHGK-CGVSVIRV 108
+ ++F G G V+ +
Sbjct: 60 NVMVVYFKSPGSFTGEDVVEI 80
>gi|242011052|ref|XP_002426271.1| GTPase mss1, putative [Pediculus humanus corporis]
gi|212510334|gb|EEB13533.1| GTPase mss1, putative [Pediculus humanus corporis]
Length = 694
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/216 (56%), Positives = 152/216 (70%), Gaps = 5/216 (2%)
Query: 98 HGKCGVSVIRVSGPDTLNA-LKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWF 156
GKCGV+VIRVSGP+ A LK C +++ KPR ASL+ I DP + LD+GL LWF
Sbjct: 29 QGKCGVAVIRVSGPNAREAILKMTKC---KELPKPRMASLQLIRDPQTLEELDKGLILWF 85
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P+P SFTGED CEFQ+HG AVI ++L AL+KL R AEPG+F+KRAF KLDL + E
Sbjct: 86 PEPKSFTGEDSCEFQIHGGPAVIESVLTALSKLSNFRMAEPGDFTKRAFHAGKLDLVEVE 145
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
LGDLI AET LQR++AL+QM+GNL +LY WR +L++LA VEAYIDFSEDE IE++I+
Sbjct: 146 GLGDLIHAETNLQRKQALYQMEGNLSKLYKTWRANLLKNLAHVEAYIDFSEDENIENDII 205
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
V + L IE H+ K G R+R GIK+ I
Sbjct: 206 ENVHKNLTVLKNEIENHLSDGRK-GERLRDGIKTAI 240
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 50/69 (72%), Gaps = 4/69 (5%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNA-LKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TIFALSSG GKCGV+VIRVSGP+ A LK C +++PKPR ASL+ I DP + L
Sbjct: 21 TIFALSSGQGKCGVAVIRVSGPNAREAILKMTKC---KELPKPRMASLQLIRDPQTLEEL 77
Query: 88 DEGLCLWFP 96
D+GL LWFP
Sbjct: 78 DKGLILWFP 86
>gi|379023273|ref|YP_005299934.1| tRNA modification GTPase TrmE [Rickettsia canadensis str. CA410]
gi|376324211|gb|AFB21452.1| tRNA modification GTPase TrmE [Rickettsia canadensis str. CA410]
Length = 445
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/337 (40%), Positives = 183/337 (54%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGP +L L+ + D K R + I P S ++D + ++F
Sbjct: 12 GKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITFPESGELIDNAMVVYFKS 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E HGS A+ ++ AL +P +R AE GEF+KRAF NNK DLT E +
Sbjct: 69 PGSFTGEDVAEIYTHGSKAISIMLINALLNIPNIRLAEAGEFTKRAFLNNKFDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q ++A+ Q G L++LY+ W
Sbjct: 129 ADLINAETIMQHRQAIRQAGGALEELYNNW------------------------------ 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R Q++Q+ ++ +EAYIDF DE I D+ILN V
Sbjct: 159 -REQLLQI---------------------------ISLLEAYIDFP-DEDIPDSILNKVN 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L I ++ N+ G + SG+K I+G PN GKSSL+NFL Q+ I+IV++I G
Sbjct: 190 NTHTNLINEISNYLN-DNRRGELLNSGLKLAIIGPPNAGKSSLLNFLMQRDIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+R +SDIIE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEG 285
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + D K R + I P S ++D
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITFPESGELID 59
Query: 89 EGLCLWFPRHG 99
+ ++F G
Sbjct: 60 NAMVVYFKSPG 70
>gi|157804128|ref|YP_001492677.1| tRNA modification GTPase TrmE [Rickettsia canadensis str. McKiel]
gi|166234816|sp|A8EZV9.1|MNME_RICCK RecName: Full=tRNA modification GTPase MnmE
gi|157785391|gb|ABV73892.1| tRNA modification GTPase [Rickettsia canadensis str. McKiel]
Length = 445
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/337 (40%), Positives = 183/337 (54%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGP +L L+ + D K R + I P S ++D + ++F
Sbjct: 12 GKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITFPESGELIDNAMVVYFKS 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E HGS A+ ++ AL +P +R AE GEF+KRAF NNK DLT E +
Sbjct: 69 PGSFTGEDVAEIYTHGSKAISIMLINALLNIPNIRLAEAGEFTKRAFLNNKFDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q ++A+ Q G L++LY+ W
Sbjct: 129 ADLINAETIMQHRQAIRQAGGALEELYNNW------------------------------ 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R Q++Q+ ++ +EAYIDF DE I D+ILN V
Sbjct: 159 -REQLLQI---------------------------ISLLEAYIDFP-DEDIPDSILNKVN 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L I ++ N+ G + SG+K I+G PN GKSSL+NFL Q+ I+IV++I G
Sbjct: 190 NTHTNLINEISNYLN-DNRRGELLNSGLKLAIIGPPNAGKSSLLNFLMQRDIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+R +SDIIE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEG 285
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + D K R + I P S ++D
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITFPESGELID 59
Query: 89 EGLCLWFPRHG 99
+ ++F G
Sbjct: 60 NAMVVYFKSPG 70
>gi|91204852|ref|YP_537207.1| tRNA modification GTPase TrmE [Rickettsia bellii RML369-C]
gi|122426138|sp|Q1RKJ6.1|MNME_RICBR RecName: Full=tRNA modification GTPase MnmE
gi|91068396|gb|ABE04118.1| tRNA modification GTPase TrmE [Rickettsia bellii RML369-C]
Length = 445
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 132/337 (39%), Positives = 188/337 (55%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V RVSG +L LK + + KPR+ + + P S ++D + ++F
Sbjct: 12 GKAGVAVFRVSGTKSLEVLKLLTGKSN---FKPRFMYYQKLTSPESNDLIDNAMVVYFKA 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E HGS A+ + AL +PG+R AE GEF+KRAF NNK DLT E +
Sbjct: 69 PNSFTGEDVVEIHTHGSKAISIMLTNALLNIPGVRLAEAGEFTKRAFLNNKFDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q ++A+ Q G L++LY+ W
Sbjct: 129 ADLINAETIMQHKQAIRQAGGALEELYNSW------------------------------ 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RSQ++++ ++ +EAYIDF DE I +++L V
Sbjct: 159 -RSQLLRI---------------------------ISLLEAYIDFP-DEDIPESVLKDVT 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L +I +++ N+ G +RSG+K I+G PN GKSSL+NFL ++ I+IV++I G
Sbjct: 190 NTHKTLINTISEYLN-DNRKGELLRSGLKLAIIGPPNAGKSSLLNFLMRRDIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+R ++D+IE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIRGESNDVIEQEG 285
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V RVSG +L LK + + KPR+ + + P S ++D
Sbjct: 3 TIFAQSSSFGKAGVAVFRVSGTKSLEVLKLLTGKSNF---KPRFMYYQKLTSPESNDLID 59
Query: 89 EGLCLWF 95
+ ++F
Sbjct: 60 NAMVVYF 66
>gi|157826422|ref|YP_001495486.1| tRNA modification GTPase TrmE [Rickettsia bellii OSU 85-389]
gi|166234815|sp|A8GUF3.1|MNME_RICB8 RecName: Full=tRNA modification GTPase MnmE
gi|157801726|gb|ABV78449.1| tRNA modification GTPase TrmE [Rickettsia bellii OSU 85-389]
Length = 445
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 132/337 (39%), Positives = 188/337 (55%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V RVSG +L LK + + KPR+ + + P S ++D + ++F
Sbjct: 12 GKAGVAVFRVSGTKSLEVLKLLTGKSN---FKPRFMYYQKLTSPESNDLIDNAMVVYFKA 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E HGS A+ + AL +PG+R AE GEF+KRAF NNK DLT E +
Sbjct: 69 PNSFTGEDVVEIHTHGSKAISIMLTNALLNIPGVRLAEAGEFTKRAFLNNKFDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q ++A+ Q G L++LY+ W
Sbjct: 129 ADLINAETIMQHKQAIRQAGGALEELYNSW------------------------------ 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RSQ++++ ++ +EAYIDF DE I +++L V
Sbjct: 159 -RSQLLRI---------------------------ISLLEAYIDFP-DEDIPESVLKDVT 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L +I +++ N+ G +RSG+K I+G PN GKSSL+NFL ++ I+IV++I G
Sbjct: 190 NTHKTLINTISEYLN-DNRKGELLRSGLKLAIIGPPNAGKSSLLNFLMRRDIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+R ++D+IE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIRGESNDVIEQEG 285
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V RVSG +L LK + + KPR+ + + P S ++D
Sbjct: 3 TIFAQSSSFGKAGVAVFRVSGTKSLEVLKLLTGKSNF---KPRFMYYQKLTSPESNDLID 59
Query: 89 EGLCLWF 95
+ ++F
Sbjct: 60 NAMVVYF 66
>gi|410929455|ref|XP_003978115.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
[Takifugu rubripes]
Length = 486
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 116/219 (52%), Positives = 148/219 (67%), Gaps = 2/219 (0%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CGV+VIR SGP + AL+ +A + PR ASLRNI DP S +LD GL WFP
Sbjct: 21 QGRCGVAVIRASGPASSTALRCLAGLTHSLI-PPRTASLRNITDPNSREILDRGLVFWFP 79
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P+SFTGED EF +HG AVI A+L AL +PG+RPAE GEF++RAF K+ LT+ E
Sbjct: 80 GPHSFTGEDSVEFHIHGGAAVIAAVLQALGSVPGMRPAEAGEFTRRAFQAGKMGLTEVEG 139
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
LGDLI AETE QR++AL QM G L +LY W + LA VEA+IDFSEDE+IED +L+
Sbjct: 140 LGDLIHAETEAQRRQALRQMSGELGRLYQNWSHQLKRYLAHVEAFIDFSEDELIEDGVLH 199
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLAS 316
V V QL +EKH++ + G R+RSG++ VI A+
Sbjct: 200 RVDKSVHQLQAEVEKHLK-DERRGERLRSGVQVVIAGAT 237
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/122 (56%), Positives = 90/122 (73%), Gaps = 2/122 (1%)
Query: 314 LASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGE 373
LA VEA+IDFSEDE+IED +L+ V V QL +EKH++ + G R+RSG++ VI G
Sbjct: 178 LAHVEAFIDFSEDELIEDGVLHRVDKSVHQLQAEVEKHLK-DERRGERLRSGVQVVIAGA 236
Query: 374 PNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIET 433
N GKSSL+N LCQ+ +IV+ I GTTRDV+E LDIGG+PV+L DTAGLR + D++E
Sbjct: 237 TNAGKSSLLNTLCQRPAAIVSPIAGTTRDVVETALDIGGFPVLLSDTAGLR-DSPDLVER 295
Query: 434 EG 435
EG
Sbjct: 296 EG 297
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
LA TIFALSSG G+CGV+VIR SGP + AL+ +A +P PR ASLRNI DP S
Sbjct: 8 LADAGTIFALSSGQGRCGVAVIRASGPASSTALRCLAGLTHSLIP-PRTASLRNITDPNS 66
Query: 84 KVVLDEGLCLWFP 96
+ +LD GL WFP
Sbjct: 67 REILDRGLVFWFP 79
>gi|383313100|ref|YP_005365901.1| tRNA modification GTPase TrmE [Candidatus Rickettsia amblyommii
str. GAT-30V]
gi|378931760|gb|AFC70269.1| tRNA modification GTPase TrmE [Candidatus Rickettsia amblyommii
str. GAT-30V]
Length = 445
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 135/337 (40%), Positives = 187/337 (55%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGP +L L+ + D K R + I P ++ ++D + ++F
Sbjct: 12 GKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELIDNVMVVYFKS 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E HGS A+ + AL + G+R AE GEF+KRAF NNK DLT E +
Sbjct: 69 PGSFTGEDVVEIHTHGSKAISIMLTNALLNIAGIRLAEAGEFTKRAFLNNKFDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q ++A+ Q+ G L++LY N
Sbjct: 129 ADLINAETIMQHKQAIRQVSGKLEELY-------------------------------NN 157
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RSQ++++ ++ +EAYIDF DE I D +LN V
Sbjct: 158 WRSQLLKI---------------------------ISLLEAYIDFP-DEDIPDTVLNEVT 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L +I +++ N+ G +RSG+K I+G PNVGKSSL+NFL Q+ I+IV++I G
Sbjct: 190 NTHTILVNTISEYLN-DNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+R +SDIIE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEG 285
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + D K R + I P +K ++D
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELID 59
Query: 89 EGLCLWFPRHGK-CGVSVIRV 108
+ ++F G G V+ +
Sbjct: 60 NVMVVYFKSPGSFTGEDVVEI 80
>gi|157826149|ref|YP_001493869.1| tRNA modification GTPase TrmE [Rickettsia akari str. Hartford]
gi|166234814|sp|A8GPN6.1|MNME_RICAH RecName: Full=tRNA modification GTPase MnmE
gi|157800107|gb|ABV75361.1| tRNA modification GTPase TrmE [Rickettsia akari str. Hartford]
Length = 445
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 133/337 (39%), Positives = 187/337 (55%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGP +L L+ + +K KPR + I+ P ++ ++D + ++F
Sbjct: 12 GKAGVAVFRISGPKSLEVLQLLTG---KKAFKPRLMYYQQIIAPETKELIDNAMVVYFKL 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E HGS A+ ++ L + +R AE GEF+KRAF NNK DLT E +
Sbjct: 69 PNSFTGEDVVEIHTHGSKAISIMMINTLLNISDIRLAEAGEFTKRAFLNNKFDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q ++A+ Q G L++LY N+
Sbjct: 129 ADLINAETIMQHRQAIRQASGRLEELY-------------------------------NS 157
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RSQ++++ ++ +EAYIDF DE I D++LN V
Sbjct: 158 WRSQLLKI---------------------------ISLLEAYIDFP-DEDIPDSVLNDVN 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L I ++ N+ G + SG+K IVG PN GKSSL+NFL Q+ I++V++I G
Sbjct: 190 NTHKNLVNEISNYLN-DNRRGELLNSGLKLAIVGPPNTGKSSLLNFLMQRDIAMVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+R +SDIIE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEG 285
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + +K KPR + I+ P +K ++D
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTG---KKAFKPRLMYYQQIIAPETKELID 59
Query: 89 EGLCLWF 95
+ ++F
Sbjct: 60 NAMVVYF 66
>gi|383501312|ref|YP_005414671.1| tRNA modification GTPase TrmE [Rickettsia australis str. Cutlack]
gi|378932323|gb|AFC70828.1| tRNA modification GTPase TrmE [Rickettsia australis str. Cutlack]
Length = 445
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 133/337 (39%), Positives = 185/337 (54%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGP +L L+ + D KPR + I+ P ++ ++D + ++F
Sbjct: 12 GKAGVAVFRISGPKSLEVLQLLTGKKD---FKPRLMYYQQIIAPETKELIDNAMVVYFKL 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E HGS A+ ++ L + +R AE GEF+KRAF NNK DLT E +
Sbjct: 69 PNSFTGEDVVEIHTHGSKAISIMLINTLLNISDIRLAEAGEFTKRAFLNNKFDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q ++A+ Q G L++LY N
Sbjct: 129 ADLINAETIMQHRQAIRQASGILEELY-------------------------------NN 157
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RSQ++++ ++ +EAYIDF DE I D++LN V
Sbjct: 158 WRSQLLKI---------------------------ISLLEAYIDFP-DEDIPDSVLNDVN 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L I ++ N+ G + SG+K I+G PN GKSSL+NFL Q+ I+IV++I G
Sbjct: 190 NTHKNLVNEISHYLN-DNRRGELLNSGLKLAIIGPPNAGKSSLLNFLMQRDIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+R +SDIIE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEG 285
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + D KPR + I+ P +K ++D
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGKKD---FKPRLMYYQQIIAPETKELID 59
Query: 89 EGLCLWF 95
+ ++F
Sbjct: 60 NAMVVYF 66
>gi|344282634|ref|XP_003413078.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial isoform 2
[Loxodonta africana]
Length = 471
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 137/338 (40%), Positives = 181/338 (53%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CGV+VIR SGP + AL+ + D + R ASLR + DP S LD L LWFP
Sbjct: 43 QGRCGVAVIRTSGPASGPALRGLTAGRD--LPPARSASLRLLSDPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF KL LT+ E
Sbjct: 101 GPQSFTGEDCAEFHVHGGFAVVSGVLQALGGVPGLRPAEAGEFTRRAFARGKLSLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L +L +W + + +LA VEAYIDFSED+ +E+++L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGRLCHDWAETLTTALAHVEAYIDFSEDDNLEEDVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
V S V L ++ H+ + + G R+RSG V+ N
Sbjct: 221 RVDSSVRGLEAALGAHLRDARR-GQRLRSGAHVVVA------------------GPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K +SIV+ P
Sbjct: 262 KSSLVNL---------LSRK-------------------------------PVSIVSPEP 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+P +L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPALLSDTAGLREGVGP-VEQEG 318
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CGV+VIR SGP + AL+ + D +P R ASLR + DP S LD
Sbjct: 35 TIFALSSGQGRCGVAVIRTSGPASGPALRGLTAGRD--LPPARSASLRLLSDPRSGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|344282632|ref|XP_003413077.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial isoform 1
[Loxodonta africana]
Length = 492
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 137/338 (40%), Positives = 181/338 (53%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CGV+VIR SGP + AL+ + D + R ASLR + DP S LD L LWFP
Sbjct: 43 QGRCGVAVIRTSGPASGPALRGLTAGRD--LPPARSASLRLLSDPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF KL LT+ E
Sbjct: 101 GPQSFTGEDCAEFHVHGGFAVVSGVLQALGGVPGLRPAEAGEFTRRAFARGKLSLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L +L +W + + +LA VEAYIDFSED+ +E+++L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGRLCHDWAETLTTALAHVEAYIDFSEDDNLEEDVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
V S V L ++ H+ + + G R+RSG V+ N
Sbjct: 221 RVDSSVRGLEAALGAHLRDARR-GQRLRSGAHVVVA------------------GPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K +SIV+ P
Sbjct: 262 KSSLVNL---------LSRK-------------------------------PVSIVSPEP 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+P +L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPALLSDTAGLREGVGP-VEQEG 318
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CGV+VIR SGP + AL+ + D +P R ASLR + DP S LD
Sbjct: 35 TIFALSSGQGRCGVAVIRTSGPASGPALRGLTAGRD--LPPARSASLRLLSDPRSGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|194223742|ref|XP_001503159.2| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial [Equus
caballus]
Length = 428
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 135/337 (40%), Positives = 182/337 (54%), Gaps = 62/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+CG++VIR SGP + +AL+S+ D V PR A LR + DP + LD L LWFP
Sbjct: 44 GRCGIAVIRTSGPASGHALRSLTAPRD--VPPPRSACLRLLSDPRTGEPLDRALVLWFPG 101
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF + KL LT+ E L
Sbjct: 102 PQSFTGEDCAEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLSLTEVEGL 161
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 162 ADLIHAETEAQRRQALRQLDGELGHLCRSWAETLTKALAHVEAYIDFGEDDNLEEGVLER 221
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
S+V +L ++ H+ + + G R+RSG V+ N +
Sbjct: 222 ADSEVRELEVALGAHLRDARR-GQRLRSGAHVVVA------------------GPPNAGK 262
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S +V L LS K +SIV+ PG
Sbjct: 263 SSLVNL---------LSRK-------------------------------PVSIVSPEPG 282
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDV+E +D+ G+P +L DTAGLR +E EG
Sbjct: 283 TTRDVLETPVDLAGFPALLSDTAGLREGVGP-VEQEG 318
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+S+ D VP PR A LR + DP + LD
Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRSLTAPRD--VPPPRSACLRLLSDPRTGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|66472790|ref|NP_001018605.1| tRNA modification GTPase GTPBP3, mitochondrial precursor [Danio
rerio]
gi|82192604|sp|Q501Z5.1|GTPB3_DANRE RecName: Full=tRNA modification GTPase GTPBP3, mitochondrial;
AltName: Full=GTP-binding protein 3; Flags: Precursor
gi|63100959|gb|AAH95801.1| GTP binding protein 3 [Danio rerio]
Length = 500
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 114/216 (52%), Positives = 147/216 (68%), Gaps = 5/216 (2%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
GKCGV+V+RVSGP + A++ + + + PR ASLR+I P S+ +LD GL LWFP
Sbjct: 44 QGKCGVAVVRVSGPASALAVRRLT----RSLPAPRTASLRSISHPQSKELLDRGLVLWFP 99
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGED EF +HG AVI+ +L AL LPGLRPAE GEF++RAF+ KLDLT+ E
Sbjct: 100 GPASFTGEDSAEFHIHGGPAVISGVLQALGSLPGLRPAEAGEFTRRAFYAGKLDLTEVEG 159
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL QM G+L ++Y +W + LA VEA+IDFSEDE+IED +LN
Sbjct: 160 LSDLIHAETEAQRRQALRQMAGDLGRIYQDWTDQLKRCLAHVEAFIDFSEDELIEDGVLN 219
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
V V QL +E H+ + G R+RSG+ VI
Sbjct: 220 DVDRAVQQLQTDMENHLS-DERRGERLRSGVHVVIA 254
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/123 (57%), Positives = 86/123 (69%), Gaps = 2/123 (1%)
Query: 313 CLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVG 372
CLA VEA+IDFSEDE+IED +LN V V QL +E H+ + G R+RSG+ VI G
Sbjct: 197 CLAHVEAFIDFSEDELIEDGVLNDVDRAVQQLQTDMENHLS-DERRGERLRSGVHVVIAG 255
Query: 373 EPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIE 432
N GKSSL+N L Q+ +IV+ GTTRDV+E LDIGGYPV+L DTAGLR TSD +E
Sbjct: 256 STNAGKSSLLNLLTQRPAAIVSPTAGTTRDVLEVPLDIGGYPVLLSDTAGLR-DTSDSVE 314
Query: 433 TEG 435
EG
Sbjct: 315 QEG 317
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 52/76 (68%), Gaps = 4/76 (5%)
Query: 21 CSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVD 80
CS +TI++LSSG GKCGV+V+RVSGP + A++ + + +P PR ASLR+I
Sbjct: 28 CSGWPGDDTIYSLSSGQGKCGVAVVRVSGPASALAVRRLT----RSLPAPRTASLRSISH 83
Query: 81 PVSKVVLDEGLCLWFP 96
P SK +LD GL LWFP
Sbjct: 84 PQSKELLDRGLVLWFP 99
>gi|379713425|ref|YP_005301763.1| tRNA modification GTPase TrmE [Rickettsia massiliae str. AZT80]
gi|376334071|gb|AFB31303.1| tRNA modification GTPase TrmE [Rickettsia massiliae str. AZT80]
Length = 445
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 134/337 (39%), Positives = 186/337 (55%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGP +L L+ + D K R + I P ++ ++D + ++F
Sbjct: 12 GKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELIDNVMVVYFKS 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E HGS A+ ++ AL + G+R AE GEF+KRAF NNK DLT E +
Sbjct: 69 PGSFTGEDVVEIHTHGSKAISIILINALLNIAGIRLAEAGEFTKRAFLNNKFDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q ++A+ Q G L++LY N
Sbjct: 129 ADLINAETIMQHKQAIRQANGKLEELY-------------------------------NN 157
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RSQ++++ ++ +EAYIDF DE I D +LN V
Sbjct: 158 WRSQLLKI---------------------------ISLLEAYIDFP-DEDIPDTVLNEVT 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L +I +++ N+ G +RSG+K I+G PNVGKSSL+NFL Q+ I+IV++I G
Sbjct: 190 NTHTILVNTISEYLN-DNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+ +SDIIE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIGEESSDIIEQEG 285
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + D K R + I P +K ++D
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELID 59
Query: 89 EGLCLWFPRHG 99
+ ++F G
Sbjct: 60 NVMVVYFKSPG 70
>gi|383482070|ref|YP_005390985.1| tRNA modification GTPase TrmE [Rickettsia rhipicephali str.
3-7-female6-CWPP]
gi|378934409|gb|AFC72912.1| tRNA modification GTPase TrmE [Rickettsia rhipicephali str.
3-7-female6-CWPP]
Length = 445
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 134/337 (39%), Positives = 186/337 (55%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGP +L L+ + D K R + I P ++ ++D + ++F
Sbjct: 12 GKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELIDNVMVVYFKS 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E HGS A+ + AL + G+R AE GEF+KRAF NNK DLT E +
Sbjct: 69 PGSFTGEDVVEIHTHGSKAISIMLTNALLNIAGIRLAEAGEFTKRAFLNNKFDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q ++A+ Q G L++LY N
Sbjct: 129 ADLINAETIMQHKQAIRQANGKLEELY-------------------------------NN 157
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RSQ++++ ++ +EAYIDF DE I D +LN V
Sbjct: 158 WRSQLLKI---------------------------ISLLEAYIDFP-DEDIPDTVLNEVT 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L +I +++ N+ G +RSG+K I+G PNVGKSSL+NFL Q++I+IV++I G
Sbjct: 190 NTHTILVNTISEYLN-DNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQREIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+ +SDIIE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIGEESSDIIEQEG 285
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + D K R + I P +K ++D
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELID 59
Query: 89 EGLCLWFPRHGK-CGVSVIRV 108
+ ++F G G V+ +
Sbjct: 60 NVMVVYFKSPGSFTGEDVVEI 80
>gi|408376152|ref|ZP_11173757.1| tRNA modification GTPase TrmE [Agrobacterium albertimagni AOL15]
gi|407749619|gb|EKF61130.1| tRNA modification GTPase TrmE [Agrobacterium albertimagni AOL15]
Length = 430
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 134/335 (40%), Positives = 179/335 (53%), Gaps = 65/335 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+VIR+SGP +A+ ++ + +PR ASLR + ++ LD GL L FP PN
Sbjct: 8 SGVAVIRISGPVAFDAVSALIG----PLPRPRQASLRTLKSSAGDI-LDRGLVLTFPGPN 62
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDC E QVHG AV+NAILG+L G+R AEPGEFSKRAF N K+DL + E L D
Sbjct: 63 SFTGEDCAELQVHGGRAVVNAILGSLAGFNGVRFAEPGEFSKRAFENGKMDLVEVEGLAD 122
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
L+ AETE+QR+ A Q G+L +Y EWR+ ++ + +EA +DFS++ I ++ + V
Sbjct: 123 LLAAETEMQRRLANEQANGHLSAVYDEWREKLIYIRSMLEAELDFSDEGDIPGSVSDRVW 182
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
++V L ++K I D EII D
Sbjct: 183 AEVATLKSQVDKAIG--------------------------DLRAGEIIRD--------- 207
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
G + + G PN GKSSLMN L Q+ ++IVT I GTT
Sbjct: 208 ------------------------GFRVALAGRPNAGKSSLMNALAQRDVAIVTPIAGTT 243
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
RDV+ LDI GY L DTAG+R T D++E EG
Sbjct: 244 RDVVRCELDIEGYKFELFDTAGIRGTV-DVVEQEG 277
>gi|402703072|ref|ZP_10851051.1| tRNA modification GTPase TrmE [Rickettsia helvetica C9P9]
Length = 445
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 133/337 (39%), Positives = 184/337 (54%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGP +L L+ + D K R + I P ++ ++D + ++F
Sbjct: 12 GKAGVAVFRISGPQSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELIDNAMVVYFKS 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E HGS A+ ++ AL + +R AE GEF+KRAF NNK DLT E +
Sbjct: 69 PNSFTGEDVVEIHTHGSKAISTMLINALLNIADIRLAEAGEFTKRAFLNNKFDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q ++A+ Q G L++ + N
Sbjct: 129 ADLINAETIMQHRQAIRQASGGLEE-------------------------------LYNN 157
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RSQ++++ ++ +EAYIDF DE I D++LN V
Sbjct: 158 WRSQLLKI---------------------------ISLLEAYIDFP-DEDIPDSVLNDVN 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L I ++ N+ G + SG+K I+G PNVGKSSL+NFL QK I+IV++I G
Sbjct: 190 NTHKNLVNEISNYLN-DNRRGELLNSGLKLAIIGPPNVGKSSLLNFLMQKDIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+R +SDIIE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEG 285
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + D K R + I P +K ++D
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPQSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELID 59
Query: 89 EGLCLWF 95
+ ++F
Sbjct: 60 NAMVVYF 66
>gi|157964906|ref|YP_001499730.1| tRNA modification GTPase TrmE [Rickettsia massiliae MTU5]
gi|166991114|sp|A8F2P7.1|MNME_RICM5 RecName: Full=tRNA modification GTPase MnmE
gi|157844682|gb|ABV85183.1| tRNA modification GTPase TrmE [Rickettsia massiliae MTU5]
Length = 445
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 134/337 (39%), Positives = 185/337 (54%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGP +L L+ + D K R + I P ++ ++D + ++F
Sbjct: 12 GKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELIDNVMVVYFKS 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E HGS A+ + AL + G+R AE GEF+KRAF NNK DLT E +
Sbjct: 69 PGSFTGEDVVEIHTHGSKAISIILTNALLNIAGIRLAEAGEFTKRAFLNNKFDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q ++A+ Q G L++LY N
Sbjct: 129 ADLINAETIMQHKQAIRQANGKLEELY-------------------------------NN 157
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RSQ++++ ++ +EAYIDF DE I D +LN V
Sbjct: 158 WRSQLLKI---------------------------ISLLEAYIDFP-DEDIPDTVLNEVT 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L +I +++ N+ G +RSG+K I+G PNVGKSSL+NFL Q+ I+IV++I G
Sbjct: 190 NTHTILVNTISEYLN-DNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+ +SDIIE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIGEESSDIIEQEG 285
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + D K R + I P +K ++D
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELID 59
Query: 89 EGLCLWFPRHGK-CGVSVIRV 108
+ ++F G G V+ +
Sbjct: 60 NVMVVYFKSPGSFTGEDVVEI 80
>gi|301753859|ref|XP_002912763.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
isoform 1 [Ailuropoda melanoleuca]
Length = 491
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 136/338 (40%), Positives = 182/338 (53%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CG++VIR SGP + +AL+S+ Q + R A LR + P S LD L LWFP
Sbjct: 43 QGRCGIAVIRTSGPASGHALRSLTA--PQDLPPARSACLRLLSHPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF + KL LT+ E
Sbjct: 101 GPQSFTGEDCAEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLSLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDFSED+ +E+ +L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCRAWAKTLTKALAHVEAYIDFSEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
V SQV +L ++ H+ + + G R+RSG V+ N
Sbjct: 221 RVDSQVRELELALSAHLRDARR-GQRLRSGAHVVVA------------------GPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K +SIV+ P
Sbjct: 262 KSSLVNL---------LSRK-------------------------------PVSIVSPEP 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+P +L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPALLSDTAGLREGVGP-VEQEG 318
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
T+FALSSG G+CG++VIR SGP + +AL+S+ Q +P R A LR + P S LD
Sbjct: 35 TVFALSSGQGRCGIAVIRTSGPASGHALRSLTA--PQDLPPARSACLRLLSHPRSGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|301753861|ref|XP_002912764.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
isoform 2 [Ailuropoda melanoleuca]
Length = 470
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 136/337 (40%), Positives = 182/337 (54%), Gaps = 62/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+CG++VIR SGP + +AL+S+ Q + R A LR + P S LD L LWFP
Sbjct: 44 GRCGIAVIRTSGPASGHALRSLTA--PQDLPPARSACLRLLSHPRSGEPLDRALVLWFPG 101
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF + KL LT+ E L
Sbjct: 102 PQSFTGEDCAEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLSLTEVEGL 161
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDFSED+ +E+ +L
Sbjct: 162 ADLIHAETEAQRRQALRQLDGELGHLCRAWAKTLTKALAHVEAYIDFSEDDNLEEGVLER 221
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
V SQV +L ++ H+ + + G R+RSG V+ N +
Sbjct: 222 VDSQVRELELALSAHLRDARR-GQRLRSGAHVVVA------------------GPPNAGK 262
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S +V L LS K +SIV+ PG
Sbjct: 263 SSLVNL---------LSRK-------------------------------PVSIVSPEPG 282
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDV+E +D+ G+P +L DTAGLR +E EG
Sbjct: 283 TTRDVLETPVDLAGFPALLSDTAGLREGVGP-VEQEG 318
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
T+FALSSG G+CG++VIR SGP + +AL+S+ Q +P R A LR + P S LD
Sbjct: 35 TVFALSSGQGRCGIAVIRTSGPASGHALRSLTA--PQDLPPARSACLRLLSHPRSGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|402496625|ref|YP_006555885.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Onchocerca
ochengi]
gi|398649898|emb|CCF78068.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Onchocerca
ochengi]
Length = 454
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 144/349 (41%), Positives = 199/349 (57%), Gaps = 68/349 (19%)
Query: 88 DEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVV 147
DE + GK GV+VIR+SG +ALK+++ + +K KPR+A+L ++ D +++
Sbjct: 5 DETIFALSTVFGKSGVAVIRISGN---HALKALSHFHIKKDIKPRFATLVDLYDDSGQLI 61
Query: 148 LDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFN 207
D G+ ++FP P+SFTGED E QVHGS AVI IL L+K+ + A+PGEFS RAF N
Sbjct: 62 -DNGIIIYFPAPSSFTGEDIIELQVHGSKAVIKIILEELSKIFVM--AKPGEFSLRAFLN 118
Query: 208 NKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSE 267
KLDLTQTE + DLI +ET++Q
Sbjct: 119 CKLDLTQTEGIADLINSETKMQ-------------------------------------- 140
Query: 268 DEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLAS-VEAYIDFSED 326
+ + Q+ G +EK LSN S K +I + S +E YIDF ED
Sbjct: 141 -----------AKQAIRQMSGELEK---LSN-------SWRKKLITIQSKIEVYIDFPED 179
Query: 327 EIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLC 386
IE N L + ++V L SI+ H+ N+ G R+R G+ VI G+PNVGKS+L NFL
Sbjct: 180 VTIEKNELEKINNEVQALMQSIQDHLN-DNRRGERLREGLHIVITGKPNVGKSALFNFLA 238
Query: 387 QKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
++ I+IV+ GTTRDV+E H+DIGGYP+IL DTAG+R +SD IE+EG
Sbjct: 239 KRDIAIVSEYAGTTRDVLEAHIDIGGYPIILSDTAGIR-ESSDPIESEG 286
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 48/68 (70%), Gaps = 4/68 (5%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALS+ GK GV+VIR+SG +ALK+++ + +K KPR+A+L ++ D +++ D
Sbjct: 7 TIFALSTVFGKSGVAVIRISGN---HALKALSHFHIKKDIKPRFATLVDLYDDSGQLI-D 62
Query: 89 EGLCLWFP 96
G+ ++FP
Sbjct: 63 NGIIIYFP 70
>gi|321474525|gb|EFX85490.1| hypothetical protein DAPPUDRAFT_300302 [Daphnia pulex]
Length = 496
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 133/336 (39%), Positives = 185/336 (55%), Gaps = 61/336 (18%)
Query: 100 KCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKP 159
K ++VIR+SGP +L+ + M V PR A L IVDP +E +LD GL LWFP+P
Sbjct: 44 KSAIAVIRISGPKSLDVIHRMTRRKKDSVI-PRKALLCRIVDPKNEEMLDNGLVLWFPQP 102
Query: 160 NSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALG 219
+SFTGED E VHG +AV+++++ AL KLPG R AE GEF+KRA+ KLD T+ E L
Sbjct: 103 HSFTGEDSVELHVHGGVAVVSSVINALHKLPGFRLAEAGEFTKRAYLAGKLDATEVEGLA 162
Query: 220 DLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTV 279
DL++AETE QR++A+ Q G L LY+ WR +L +A +EA+IDF ED+ I + +L T+
Sbjct: 163 DLLRAETETQRRQAIRQATGELAGLYNLWRTRVLTCMAHLEAFIDFGEDQDIGEEVLGTL 222
Query: 280 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRS 339
R V L ++ H+ N+ G R+RSG+K I E + +++N
Sbjct: 223 RDSVQSLKAEVDSHLN-DNRRGERLRSGVKVAI----------IGEPNAGKSSLIN---- 267
Query: 340 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGT 399
I+G NV +IV+ GT
Sbjct: 268 ------------------------------ILGRRNV--------------AIVSPHAGT 283
Query: 400 TRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TRDV+E LDIGG+PV++ DTAGLR + D +E EG
Sbjct: 284 TRDVLEISLDIGGFPVVICDTAGLRHSV-DPVENEG 318
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 17 FSRRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLR 76
++RRCS ++TIFALSSG K ++VIR+SGP +L+ + M V PR A L
Sbjct: 22 YTRRCSATTHRSTIFALSSGLSKSAIAVIRISGPKSLDVIHRMTRRKKDSV-IPRKALLC 80
Query: 77 NIVDPVSKVVLDEGLCLWFPR 97
IVDP ++ +LD GL LWFP+
Sbjct: 81 RIVDPKNEEMLDNGLVLWFPQ 101
>gi|330800057|ref|XP_003288056.1| hypothetical protein DICPUDRAFT_152248 [Dictyostelium purpureum]
gi|325081944|gb|EGC35443.1| hypothetical protein DICPUDRAFT_152248 [Dictyostelium purpureum]
Length = 503
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 129/337 (38%), Positives = 186/337 (55%), Gaps = 60/337 (17%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+++RVSGPD+ LK + + + K R A+L P + +D+G+ +WFP
Sbjct: 40 GKSGVAIVRVSGPDSKLVLKELTKKSNIE-PKERLATLSTFYHPKTNEQVDKGIFVWFPS 98
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED EF +HG AVI+ L A++ + G RP+E GEF++RAF N K+DLTQ E L
Sbjct: 99 PNSFTGEDVVEFHIHGGRAVISETLDAISSVDGTRPSEQGEFTRRAFENGKMDLTQIEGL 158
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL+ A T Q++ AL QM+G++
Sbjct: 159 SDLLDASTSYQKKIALKQMQGSIG------------------------------------ 182
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
Q + S+ K + IR+ A +EA+IDF +D I++ + +
Sbjct: 183 ------QFYFSLRKDL---------IRAS-------AYMEAFIDFGDDAEIDNETVEQSK 220
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ + I+ H++ + G R+R G IVG PN GKSSL+N L ++ SIV+ I G
Sbjct: 221 RSIIAIRDKIQAHLD-DGRRGERLRDGASIAIVGPPNSGKSSLINLLSNRKASIVSPIAG 279
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD++E LDIGGYPV++ DTAGLR +T+DIIE EG
Sbjct: 280 TTRDIVEVTLDIGGYPVVIGDTAGLRLSTNDIIEKEG 316
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
K+TIF LSSG GK GV+++RVSGPD+ LK + + + PK R A+L P +
Sbjct: 28 FKDTIFNLSSGVGKSGVAIVRVSGPDSKLVLKELTKKSNIE-PKERLATLSTFYHPKTNE 86
Query: 86 VLDEGLCLWFP 96
+D+G+ +WFP
Sbjct: 87 QVDKGIFVWFP 97
>gi|83944969|ref|ZP_00957335.1| tRNA modification GTPase [Oceanicaulis sp. HTCC2633]
gi|83851751|gb|EAP89606.1| tRNA modification GTPase [Oceanicaulis sp. HTCC2633]
Length = 443
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 133/337 (39%), Positives = 183/337 (54%), Gaps = 65/337 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV+VIRVSGP+T L ++A P KPR A+LR V+D+GL LWF
Sbjct: 13 GRSGVAVIRVSGPETGAVLDAVAGLPR---PKPRLAALRAFRTGEG-AVIDQGLALWFEG 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGE+C EF VHG AVI A+ +L G+RPAE GEF++RAF N K+DLT+ E L
Sbjct: 69 PASFTGENCAEFHVHGGTAVIEAMAERFLEL-GVRPAEAGEFTRRAFQNGKMDLTEAEGL 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AETE QR++AL QM G L+ L Y D+
Sbjct: 128 ADLIDAETEGQREQALSQMTGALRSL-----------------YEDW------------- 157
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R Q++ + LA++E +DF ++E + + + T
Sbjct: 158 -REQLISV---------------------------LAAIEGEVDFPDEEDVPETLSETAG 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L ++ H+E + G R+R G ++GEPN GKS+L+N L ++ +IVT IPG
Sbjct: 190 PPLAMLSDALTAHLE-DGRRGERVREGFSIALIGEPNAGKSTLLNALARRDAAIVTDIPG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDV+E L + G+PVI+ DTAGLR +D +E EG
Sbjct: 249 TTRDVVEVRLVLAGFPVIVADTAGLR-DAADQVEAEG 284
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ TIFAL+S G+ GV+VIRVSGP+T L ++A P PKPR A+LR
Sbjct: 1 MSETIFALASAPGRSGVAVIRVSGPETGAVLDAVAGLPR---PKPRLAALRAFRTG-EGA 56
Query: 86 VLDEGLCLWF 95
V+D+GL LWF
Sbjct: 57 VIDQGLALWF 66
>gi|389690660|ref|ZP_10179553.1| tRNA modification GTPase TrmE [Microvirga sp. WSM3557]
gi|388588903|gb|EIM29192.1| tRNA modification GTPase TrmE [Microvirga sp. WSM3557]
Length = 436
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 127/338 (37%), Positives = 183/338 (54%), Gaps = 65/338 (19%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
HG+ V +IR+SGP++ L+SMA +V +PR A +R + DP++ LD+ L LW P
Sbjct: 14 HGRAAVCLIRISGPESRTILESMAG----RVPEPRRAVVRTLKDPMTGEPLDQALVLWMP 69
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGED E Q+HG +A A+L AL L R AE GEF++RAF N ++DL Q E
Sbjct: 70 GPGSFTGEDQAELQIHGGLATRAAVLRALGSLENCRAAEAGEFTRRAFLNGRMDLAQVEG 129
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L D+I AETE QR++A+ Q+ G L W
Sbjct: 130 LADIIDAETEAQRRQAMRQLGGRLGNAAEGW----------------------------- 160
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
R V+Q+ LA +EA +DFS++ + +++
Sbjct: 161 --RESVLQV---------------------------LALLEASLDFSDEGDVPEDLEAES 191
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+ Q+ G I + ++N+ G R+R G+ V+ G PN GKS+L+N L ++ ++IV+ I
Sbjct: 192 LQMIDQVRGEIGQA--MANRSGERLREGLTVVLAGPPNAGKSTLLNALARRDVAIVSPIA 249
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE H D+GG PVI++DTAGLR ++D IE EG
Sbjct: 250 GTTRDVIEVHCDLGGLPVIIVDTAGLR-ESADAIEQEG 286
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 4/72 (5%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFA++SGHG+ V +IR+SGP++ L+SMA +VP+PR A +R + DP++ L
Sbjct: 5 DTIFAIASGHGRAAVCLIRISGPESRTILESMAG----RVPEPRRAVVRTLKDPMTGEPL 60
Query: 88 DEGLCLWFPRHG 99
D+ L LW P G
Sbjct: 61 DQALVLWMPGPG 72
>gi|73986024|ref|XP_865647.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial isoform 2
[Canis lupus familiaris]
Length = 471
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 134/337 (39%), Positives = 180/337 (53%), Gaps = 62/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+CG++VIR SGP + +AL+S+ D + R A LR + P S LD L LWFP
Sbjct: 44 GRCGIAVIRTSGPASGHALRSLTASRD--LPPARSACLRLLSHPHSREPLDRALVLWFPG 101
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF + KL LT+ E L
Sbjct: 102 PQSFTGEDCAEFHVHGGSAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLSLTEVEGL 161
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 162 ADLIHAETEAQRRQALRQLDGELGHLCHGWAKTLTKALAHVEAYIDFGEDDNLEEGVLER 221
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
SQV +L ++ H+ + + G R+RSG I+ N +
Sbjct: 222 ANSQVRELELALSAHLRDARR-GQRLRSGA------------------HIVVTGPPNAGK 262
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S +V L LS K +SIV+ PG
Sbjct: 263 SSLVNL---------LSRK-------------------------------PVSIVSPEPG 282
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDV+E +D+ G+P +L DTAGLR +E EG
Sbjct: 283 TTRDVLETPVDLAGFPALLSDTAGLREGAGP-VEQEG 318
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+S+ D +P R A LR + P S+ LD
Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRSLTASRD--LPPARSACLRLLSHPHSREPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|410950794|ref|XP_003982088.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial isoform 2
[Felis catus]
Length = 471
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 134/338 (39%), Positives = 181/338 (53%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
HG+CG++VIR SGP + +AL+S+ D + R A LR + P S LD L LWFP
Sbjct: 43 HGRCGIAVIRTSGPASGHALRSLTAPRD--LPPARSACLRLLSHPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF + KL LT+ E
Sbjct: 101 GPQSFTGEDCAEFHVHGGPAVVSGVLQALGCVPGLRPAEAGEFTRRAFAHGKLSLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCHGWARTLTKALAHVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
S+V +L ++ H+ + + G R+RSG V+ N
Sbjct: 221 QANSEVRELQLALGAHLRDARR-GQRLRSGAHVVVA------------------GPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K +SIV+ P
Sbjct: 262 KSSLVNL---------LSRK-------------------------------PVSIVSPEP 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+P +L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPALLSDTAGLREGAGP-VEQEG 318
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSGHG+CG++VIR SGP + +AL+S+ D +P R A LR + P S LD
Sbjct: 35 TIFALSSGHGRCGIAVIRTSGPASGHALRSLTAPRD--LPPARSACLRLLSHPRSGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|410950792|ref|XP_003982087.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial isoform 1
[Felis catus]
Length = 492
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 134/338 (39%), Positives = 181/338 (53%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
HG+CG++VIR SGP + +AL+S+ D + R A LR + P S LD L LWFP
Sbjct: 43 HGRCGIAVIRTSGPASGHALRSLTAPRD--LPPARSACLRLLSHPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF + KL LT+ E
Sbjct: 101 GPQSFTGEDCAEFHVHGGPAVVSGVLQALGCVPGLRPAEAGEFTRRAFAHGKLSLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCHGWARTLTKALAHVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
S+V +L ++ H+ + + G R+RSG V+ N
Sbjct: 221 QANSEVRELQLALGAHLRDARR-GQRLRSGAHVVVA------------------GPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K +SIV+ P
Sbjct: 262 KSSLVNL---------LSRK-------------------------------PVSIVSPEP 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+P +L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPALLSDTAGLREGAGP-VEQEG 318
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSGHG+CG++VIR SGP + +AL+S+ D +P R A LR + P S LD
Sbjct: 35 TIFALSSGHGRCGIAVIRTSGPASGHALRSLTAPRD--LPPARSACLRLLSHPRSGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|409050091|gb|EKM59568.1| hypothetical protein PHACADRAFT_205787 [Phanerochaete carnosa
HHB-10118-sp]
Length = 568
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 135/351 (38%), Positives = 186/351 (52%), Gaps = 75/351 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQK--------------VSKPRYASLRNIVDPVS 144
GK GV+VIRVSGPD LN +SM ++ V KP +V P S
Sbjct: 90 GKAGVAVIRVSGPDALNVWQSMVSKSSKRNTTAKAEKKTGQSFVPKPWRMYRCQVVHPQS 149
Query: 145 EVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRA 204
+ VLD GL ++F P SFTGED EF VH A++N++L AL+ LR AEPGEF++R
Sbjct: 150 KEVLDSGLAVYFRGPRSFTGEDTVEFHVHSGRAILNSVLSALSTFASLRLAEPGEFTRRT 209
Query: 205 FFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYID 264
F + +LDLT+ E L DLI A+T QRQ AL + G LK + R IL SL+ VEA ID
Sbjct: 210 FESGRLDLTEVEGLHDLINADTSSQRQAALQAVGGVLKHRFESLRGTILRSLSLVEAVID 269
Query: 265 FSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFS 324
F E+E +ED++ ++ R R+ ++ ++ D+
Sbjct: 270 FGEEE-VEDDVYQEAKA------------------LARRARTDVQLLLA--------DYR 302
Query: 325 EDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNF 384
EI +RSG++ I G PN GKS+L+NF
Sbjct: 303 RSEI---------------------------------VRSGLRLAIFGPPNAGKSTLLNF 329
Query: 385 LCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
L +++ +IVT+IPGTTRDV+E LD+GG PVI+ DTAG+R +T D++E G
Sbjct: 330 LAKREAAIVTNIPGTTRDVLEVTLDLGGLPVIVSDTAGIR-STDDVVEKIG 379
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 67/126 (53%), Gaps = 19/126 (15%)
Query: 25 AIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQK--------------VPKP 70
A +NTI+ALS+ GK GV+VIRVSGPD LN +SM ++ VPKP
Sbjct: 77 AQRNTIYALSTPPGKAGVAVIRVSGPDALNVWQSMVSKSSKRNTTAKAEKKTGQSFVPKP 136
Query: 71 RYASLRNIVDPVSKVVLDEGLCLWF--PRH--GKCGVSVIRVSGPDTLNA-LKSMACYPD 125
+V P SK VLD GL ++F PR G+ V SG LN+ L +++ +
Sbjct: 137 WRMYRCQVVHPQSKEVLDSGLAVYFRGPRSFTGEDTVEFHVHSGRAILNSVLSALSTFAS 196
Query: 126 QKVSKP 131
++++P
Sbjct: 197 LRLAEP 202
>gi|300024783|ref|YP_003757394.1| tRNA modification GTPase TrmE [Hyphomicrobium denitrificans ATCC
51888]
gi|299526604|gb|ADJ25073.1| tRNA modification GTPase TrmE [Hyphomicrobium denitrificans ATCC
51888]
Length = 444
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 131/337 (38%), Positives = 173/337 (51%), Gaps = 64/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ +SVIR+SGP N L++M V KPR A+ R I P + LD + LWF
Sbjct: 22 GRAALSVIRISGPAVRNVLETMTA----PVPKPRVAAFRTIRHPDTGEALDRAVVLWFAA 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNS TGED EFQ HGS A + AILGAL + G R AEPGEF++R F N K+DL + E L
Sbjct: 78 PNSETGEDVAEFQGHGSRAAVAAILGALGTVKGCRLAEPGEFARRGFENGKMDLAEIEGL 137
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
GDLI+AETE QR++AL Q G L +LY WR ++E A EA IDFS++ + +
Sbjct: 138 GDLIEAETEAQRRQALAQSSGTLSKLYESWRTRLIEIAALTEAAIDFSDEGDVSASSFAD 197
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R + L I H++ D EI+ D
Sbjct: 198 ARKRADALSAEIGAHLD--------------------------DGHRGEIVRD------- 224
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
G R+ ++G PN GKSSL+N L ++ +IV+ G
Sbjct: 225 --------------------GFRV------ALLGAPNAGKSSLLNALAKRDAAIVSEEAG 258
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE LD+ G PV++ DTAG+R S ++E EG
Sbjct: 259 TTRDVIEVRLDLAGLPVVVSDTAGIREAES-LVEQEG 294
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFALSS G+ +SVIR+SGP N L++M VPKPR A+ R I P + L
Sbjct: 12 STIFALSSAPGRAALSVIRISGPAVRNVLETMTA----PVPKPRVAAFRTIRHPDTGEAL 67
Query: 88 DEGLCLWF 95
D + LWF
Sbjct: 68 DRAVVLWF 75
>gi|426228792|ref|XP_004008480.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial isoform 1
[Ovis aries]
Length = 494
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 134/337 (39%), Positives = 186/337 (55%), Gaps = 59/337 (17%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+CG++VIR SGP + +AL+S+ R A LR + DP S LD L LWFP
Sbjct: 44 GRCGIAVIRTSGPASGHALRSL-------TPPARKACLRLLSDPRSGEPLDRALVLWFPG 96
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF + KL LT+ E L
Sbjct: 97 PQSFTGEDCAEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLSLTEVEGL 156
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI +ETE QR++AL Q+ G L L W + + ++LA VEAYIDFSED+ +E+ +L+
Sbjct: 157 ADLIHSETEAQRRQALRQLDGELGDLCRGWAETLTKALAHVEAYIDFSEDDNLEEGVLDQ 216
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
S+V +L ++ H+ + + G R+RSG V+ N +
Sbjct: 217 ADSEVRRLEVALGVHLRDARR-GQRLRSGAHVVVA------------------GPPNAGK 257
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S +V L LS + G ++G+ K +SIV+ PG
Sbjct: 258 SSLVNL---------LSAE--------------GPSHLGR---------KPVSIVSPEPG 285
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TRDV+E +D+ G+P +L DTAGLR +E EG
Sbjct: 286 NTRDVLETPVDLAGFPALLSDTAGLREGVGP-VEQEG 321
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 43/68 (63%), Gaps = 7/68 (10%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+S+ P R A LR + DP S LD
Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRSL-------TPPARKACLRLLSDPRSGEPLD 87
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 88 RALVLWFP 95
>gi|239946722|ref|ZP_04698475.1| tRNA modification GTPase TrmE [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239920998|gb|EER21022.1| tRNA modification GTPase TrmE [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 445
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 131/337 (38%), Positives = 183/337 (54%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGP +L L+ + D K R + I P ++ ++D + ++F
Sbjct: 12 GKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELIDNAMVVYFKS 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E HGS A+ ++ AL + +R AE GEF+KRAF NNK DLT E +
Sbjct: 69 PGSFTGEDVVEIHTHGSKAISIMLINALLNIADIRLAEAGEFTKRAFLNNKFDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q ++A+ Q G L++ + N
Sbjct: 129 ADLINAETIMQHRQAIRQASGGLEE-------------------------------LYNN 157
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RSQ++++ ++ +EAYIDF DE I D++LN V
Sbjct: 158 WRSQLLKI---------------------------ISLLEAYIDFP-DEDIPDSVLNDVN 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L I ++ N+ G + SG+K I+G PNVGKSSL+NFL Q+ I+IV++I G
Sbjct: 190 NTHKNLVNEISNYLN-DNRRGELLNSGLKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+R +SDIIE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEG 285
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 129/285 (45%), Gaps = 66/285 (23%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + D K R + I P +K ++D
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELID 59
Query: 89 EGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVL 148
+ ++F G +G D + + + + +S +L NI D
Sbjct: 60 NAMVVYFKSPGS-------FTGEDVV----EIHTHGSKAISIMLINALLNIAD------- 101
Query: 149 DEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNN 208
+R AE GEF+KRAF NN
Sbjct: 102 -------------------------------------------IRLAEAGEFTKRAFLNN 118
Query: 209 KLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSED 268
K DLT E + DLI AET +Q ++A+ Q G L++LY+ WR +L+ ++ +EAYIDF D
Sbjct: 119 KFDLTAAEGIADLINAETIMQHRQAIRQASGGLEELYNNWRSQLLKIISLLEAYIDFP-D 177
Query: 269 EIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
E I D++LN V + L I ++ N+ G + SG+K I
Sbjct: 178 EDIPDSVLNDVNNTHKNLVNEISNYLN-DNRRGELLNSGLKLAII 221
>gi|403417320|emb|CCM04020.1| predicted protein [Fibroporia radiculosa]
Length = 572
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 134/346 (38%), Positives = 182/346 (52%), Gaps = 69/346 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMA---------CYPDQKVSKPRYASLRNIVDPVSEVVLD 149
GK GV+VIR+SGPD + + M Q+ +P +V P S +LD
Sbjct: 103 GKAGVAVIRISGPDAQDVWRGMVKTGSGGEGRAAHGQQSPEPWKMHRCRVVHPSSTAILD 162
Query: 150 EGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNK 209
+GL + F P SFT ED E +H AVI+++L AL++ P RPAEPGEF++RAF +
Sbjct: 163 DGLAVLFVAPKSFTTEDVLELHIHSGRAVISSVLAALSQFPFTRPAEPGEFTRRAFEGGR 222
Query: 210 LDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDE 269
LDLTQ E L DLI AETE QR+ AL G +
Sbjct: 223 LDLTQVEGLKDLINAETESQRRAALMAAGGASR--------------------------- 255
Query: 270 IIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEII 329
N L +R Q+++ CL+ VEA IDFSEDE I
Sbjct: 256 ----NRLERLRQQIIK---------------------------CLSLVEALIDFSEDEDI 284
Query: 330 EDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389
ED + + + ++ +I H+ S + G +RSG++ I G PN GKSSL+NFL Q++
Sbjct: 285 EDGVFDKGKDLAEEISQTIRAHLSDSWR-GEIMRSGVRLAIFGPPNAGKSSLLNFLAQRE 343
Query: 390 ISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
+IVT IPGTTRDV+E LD+GG PV++ DTAG+R TT D +E+ G
Sbjct: 344 AAIVTPIPGTTRDVLELSLDVGGLPVVIADTAGIRKTT-DHVESIG 388
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 14/99 (14%)
Query: 6 KKAAKEKAVIFFSRRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMA----- 60
K AA+E V+ S A + TI+ALS+ GK GV+VIR+SGPD + + M
Sbjct: 76 KPAAQETDVLPRSD-----AQRRTIYALSTPPGKAGVAVIRISGPDAQDVWRGMVKTGSG 130
Query: 61 ----CYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWF 95
Q+ P+P +V P S +LD+GL + F
Sbjct: 131 GEGRAAHGQQSPEPWKMHRCRVVHPSSTAILDDGLAVLF 169
>gi|426228794|ref|XP_004008481.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial isoform 2
[Ovis aries]
Length = 473
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 134/337 (39%), Positives = 186/337 (55%), Gaps = 59/337 (17%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+CG++VIR SGP + +AL+S+ R A LR + DP S LD L LWFP
Sbjct: 44 GRCGIAVIRTSGPASGHALRSL-------TPPARKACLRLLSDPRSGEPLDRALVLWFPG 96
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF + KL LT+ E L
Sbjct: 97 PQSFTGEDCAEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLSLTEVEGL 156
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI +ETE QR++AL Q+ G L L W + + ++LA VEAYIDFSED+ +E+ +L+
Sbjct: 157 ADLIHSETEAQRRQALRQLDGELGDLCRGWAETLTKALAHVEAYIDFSEDDNLEEGVLDQ 216
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
S+V +L ++ H+ + + G R+RSG V+ N +
Sbjct: 217 ADSEVRRLEVALGVHLRDARR-GQRLRSGAHVVVA------------------GPPNAGK 257
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S +V L LS + G ++G+ K +SIV+ PG
Sbjct: 258 SSLVNL---------LSAE--------------GPSHLGR---------KPVSIVSPEPG 285
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TRDV+E +D+ G+P +L DTAGLR +E EG
Sbjct: 286 NTRDVLETPVDLAGFPALLSDTAGLREGVGP-VEQEG 321
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 43/68 (63%), Gaps = 7/68 (10%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+S+ P R A LR + DP S LD
Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRSL-------TPPARKACLRLLSDPRSGEPLD 87
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 88 RALVLWFP 95
>gi|58584293|ref|YP_197866.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont strain TRS of
Brugia malayi]
gi|81311677|sp|Q5GTQ0.1|MNME_WOLTR RecName: Full=tRNA modification GTPase MnmE
gi|58418609|gb|AAW70624.1| Predicted GTPase [Wolbachia endosymbiont strain TRS of Brugia
malayi]
Length = 442
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 139/348 (39%), Positives = 195/348 (56%), Gaps = 66/348 (18%)
Query: 88 DEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVV 147
DE + GK GV+VIR+SG +ALK++ + K KPR+A+L ++ D S+ +
Sbjct: 5 DETIFALSTVFGKSGVAVIRISGN---HALKALNHFHVNKDMKPRFATLVDLYDS-SDQL 60
Query: 148 LDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFN 207
+D G+ ++FP PNSFTGED E QVHG AVI +L L+++ + A+PGEF RAF N
Sbjct: 61 IDNGIAIYFPAPNSFTGEDVIELQVHGGKAVIKIVLEELSRIFVM--AKPGEFLLRAFLN 118
Query: 208 NKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSE 267
K DLTQ E + DLI AET++Q ++A+ KQ+ E LE L S
Sbjct: 119 GKFDLTQIEGIADLIDAETKMQAKQAI-------KQMSGE-----LEKLYS--------- 157
Query: 268 DEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDE 327
+ R +++ + IE AYIDF ED
Sbjct: 158 ----------SWRQRLIAVQSKIE---------------------------AYIDFPEDV 180
Query: 328 IIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQ 387
E N L + +V L SI++H+ N+ G R+R G+ VI GEPNVGKS+L NFL +
Sbjct: 181 ATEKNELEKINDEVQTLVQSIQEHLN-DNRRGERLREGLHIVITGEPNVGKSTLFNFLAR 239
Query: 388 KQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
+ I+IV+ GTTRD++E H+DIGGYP+IL DTAG+R +SD +E+EG
Sbjct: 240 RDIAIVSEYVGTTRDILEAHIDIGGYPIILSDTAGIR-ESSDPVESEG 286
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALS+ GK GV+VIR+SG L AL D KPR+A+L ++ D S ++D
Sbjct: 7 TIFALSTVFGKSGVAVIRISGNHALKALNHFHVNKDM---KPRFATLVDLYDS-SDQLID 62
Query: 89 EGLCLWFP 96
G+ ++FP
Sbjct: 63 NGIAIYFP 70
>gi|190571401|ref|YP_001975759.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213018799|ref|ZP_03334607.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|226704787|sp|B3CMJ7.1|MNME_WOLPP RecName: Full=tRNA modification GTPase MnmE
gi|190357673|emb|CAQ55117.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212995750|gb|EEB56390.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 442
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 139/337 (41%), Positives = 191/337 (56%), Gaps = 66/337 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+VIR+SG TL AL +K KPR+A+L ++ D ++++ D G+ ++FP
Sbjct: 16 GKSGVAVIRISGNYTLKALNHFHI---KKKIKPRFATLVDLYDDSNQLI-DNGIIIYFPA 71
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E QVHGS AVI IL L+K+ + A PGEFS RAF N K DLTQ E +
Sbjct: 72 PNSFTGEDVIELQVHGSKAVIKIILEKLSKIFVM--ARPGEFSLRAFLNGKFDLTQIEGI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET++Q ++A+ KQ+ E LE L S
Sbjct: 130 ADLIDAETKMQAKQAI-------KQISGE-----LERLYS-------------------N 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R +++ + + +EAYIDF ED E + L +
Sbjct: 159 WRQRLITIQ---------------------------SKIEAYIDFPEDIWAEKSELEKIN 191
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++V L I++H+ N+ G R+R G+ VI GEPNVGKS+L NFL ++ I+IV+ G
Sbjct: 192 NEVQSLVQLIQEHLN-DNRRGERLREGLHIVITGEPNVGKSTLFNFLAKRDIAIVSEYAG 250
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD++E H+DIGGYP+IL DTAG+R +SD IE+EG
Sbjct: 251 TTRDILEAHIDIGGYPIILSDTAGIR-ESSDPIESEG 286
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 127/285 (44%), Gaps = 68/285 (23%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALS+ GK GV+VIR+SG TL AL +K KPR+A+L ++ D S ++D
Sbjct: 7 TIFALSTVFGKSGVAVIRISGNYTLKALNHFHI---KKKIKPRFATLVDLYDD-SNQLID 62
Query: 89 EGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVL 148
G+ ++FP +G D + + + + V ++ I++ +S++ +
Sbjct: 63 NGIIIYFPAPNSF-------TGEDVI----ELQVHGSKAV-------IKIILEKLSKIFV 104
Query: 149 DEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNN 208
+P F+ A +N LT++ G+ E
Sbjct: 105 -------MARPGEFSLR-----------AFLNGKFD-LTQIEGIADLIDAE--------- 136
Query: 209 KLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSED 268
T+ +A + Q EL+R LYS WRQ ++ + +EAYIDF ED
Sbjct: 137 ----TKMQAKQAIKQISGELER-------------LYSNWRQRLITIQSKIEAYIDFPED 179
Query: 269 EIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
E + L + ++V L I++H+ N+ G R+R G+ VI
Sbjct: 180 IWAEKSELEKINNEVQSLVQLIQEHLN-DNRRGERLREGLHIVIT 223
>gi|163796498|ref|ZP_02190458.1| tRNA modification GTPase TrmE [alpha proteobacterium BAL199]
gi|159178348|gb|EDP62892.1| tRNA modification GTPase TrmE [alpha proteobacterium BAL199]
Length = 444
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 189/337 (56%), Gaps = 65/337 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G++VIR+SGP A++++ +V R S + DP LD+ + + FP
Sbjct: 17 GRAGIAVIRLSGPAAFGAVEALTG----RVPTVRRMSRALLRDPRDGEALDDAMAVVFPG 72
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED EF +HG AV++ +LGAL +LPG+RPA+PGEF++RAF N++LDLT EA+
Sbjct: 73 PASFTGEDVAEFHLHGGRAVVDGVLGALLRLPGVRPADPGEFTRRAFLNDRLDLTAAEAV 132
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL+ AET QR++AL Q G SLA + Y D+
Sbjct: 133 LDLVDAETAAQRRQALRQASG---------------SLAGI--YDDW------------- 162
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R+ + V+ +A ++A+IDF DE + +++ V
Sbjct: 163 --------------------------RTAL--VMAMARLDAWIDFP-DEDLPADVVEGVI 193
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L ++E H+ + + G R+R G++ IVG PN GKSSL+N+L Q+ ++IV++ G
Sbjct: 194 EDLEGLAKALEGHLADAGR-GERLREGLRMAIVGPPNAGKSSLLNWLAQRDVAIVSATAG 252
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDV+E +LDI GYP + DTAGLR T+D +E EG
Sbjct: 253 TTRDVLEVYLDIEGYPATVADTAGLR-ETADSVEAEG 288
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 141/286 (49%), Gaps = 67/286 (23%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI AL++ G+ G++VIR+SGP A++++ +VP R S + DP L
Sbjct: 7 DTIAALATAPGRAGIAVIRLSGPAAFGAVEALTG----RVPTVRRMSRALLRDPRDGEAL 62
Query: 88 DEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVV 147
D+ + + FP GP A + + V++ R +VD
Sbjct: 63 DDAMAVVFP-------------GP---------ASFTGEDVAEFHLHGGRAVVD------ 94
Query: 148 LDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFN 207
+LGAL +LPG+RPA+PGEF++RAF N
Sbjct: 95 ---------------------------------GVLGALLRLPGVRPADPGEFTRRAFLN 121
Query: 208 NKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSE 267
++LDLT EA+ DL+ AET QR++AL Q G+L +Y +WR ++ ++A ++A+IDF
Sbjct: 122 DRLDLTAAEAVLDLVDAETAAQRRQALRQASGSLAGIYDDWRTALVMAMARLDAWIDFP- 180
Query: 268 DEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
DE + +++ V + L ++E H+ + + G R+R G++ I
Sbjct: 181 DEDLPADVVEGVIEDLEGLAKALEGHLADAGR-GERLREGLRMAIV 225
>gi|225630647|ref|YP_002727438.1| tRNA modification GTPase [Wolbachia sp. wRi]
gi|254811498|sp|C0R405.1|MNME_WOLWR RecName: Full=tRNA modification GTPase MnmE
gi|225592628|gb|ACN95647.1| tRNA modification GTPase [Wolbachia sp. wRi]
Length = 442
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 139/337 (41%), Positives = 193/337 (57%), Gaps = 66/337 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+VIR+SG ALK++ + +K KPR+A+L ++ D S+++ D G+ ++FP
Sbjct: 16 GKSGVAVIRISGN---YALKALNHFHIKKEIKPRFATLVDLYDDSSQLI-DNGIIIYFPA 71
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E QVHGS AVI IL L+K+ + A+PGEFS RAF N K DLTQ E +
Sbjct: 72 PNSFTGEDVIELQVHGSKAVIKIILEELSKVFVM--AKPGEFSLRAFLNGKFDLTQIEGI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET++Q ++A+ KQ+ E LE L S
Sbjct: 130 ADLIDAETKMQAKQAI-------KQISGE-----LERLYS-------------------N 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R +++ + + +EAYIDF ED E + L +
Sbjct: 159 WRQRLITIQ---------------------------SKIEAYIDFPEDIWAEKSELEKIN 191
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++V L I++H+ N+ G R+R G+ VI GEPNVGKS+L NFL ++ I+IV+ G
Sbjct: 192 NEVQSLVRLIQEHLN-DNRRGERLREGLHIVITGEPNVGKSTLFNFLAKRDIAIVSEYAG 250
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD++E H+DIGGYP+IL DTAG+R +SD IE EG
Sbjct: 251 TTRDILEAHIDIGGYPIILSDTAGIR-ESSDPIELEG 286
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 86/285 (30%), Positives = 140/285 (49%), Gaps = 68/285 (23%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALS+ GK GV+VIR+SG ALK++ + +K KPR+A+L ++ D S+++ D
Sbjct: 7 TIFALSTVFGKSGVAVIRISGN---YALKALNHFHIKKEIKPRFATLVDLYDDSSQLI-D 62
Query: 89 EGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVL 148
G+ ++FP +G D + + + + V ++ I++ +S+V +
Sbjct: 63 NGIIIYFPAPNSF-------TGEDVI----ELQVHGSKAV-------IKIILEELSKVFV 104
Query: 149 DEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNN 208
KP F+ LR G+F
Sbjct: 105 -------MAKPGEFS----------------------------LRAFLNGKF-------- 121
Query: 209 KLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSED 268
DLTQ E + DLI AET++Q ++A+ Q+ G L++LYS WRQ ++ + +EAYIDF ED
Sbjct: 122 --DLTQIEGIADLIDAETKMQAKQAIKQISGELERLYSNWRQRLITIQSKIEAYIDFPED 179
Query: 269 EIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
E + L + ++V L I++H+ N+ G R+R G+ VI
Sbjct: 180 IWAEKSELEKINNEVQSLVRLIQEHLN-DNRRGERLREGLHIVIT 223
>gi|384494382|gb|EIE84873.1| tRNA modification GTPase TrmE [Rhizopus delemar RA 99-880]
Length = 310
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 128/312 (41%), Positives = 170/312 (54%), Gaps = 76/312 (24%)
Query: 130 KPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL 189
+PR A+ R I P+S LD GL LWFP P+SFTGED E Q+HG AVI +L AL ++
Sbjct: 9 EPRKANFRRIRHPISGETLDRGLVLWFPGPHSFTGEDSVELQIHGGNAVIRGVLDALKEI 68
Query: 190 PGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWR 249
R A+ GEF+KRAF N+KLDLT+ E L DL+ AETE+QR+ A+ Q +G L+ Y WR
Sbjct: 69 DDFRMADQGEFAKRAFDNDKLDLTELEGLADLLNAETEIQRKLAMQQAEGGLRVPYENWR 128
Query: 250 QLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK 309
+ EIIE
Sbjct: 129 K------------------EIIE------------------------------------- 133
Query: 310 SVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSV 369
C+A+ EA IDF EDE IED +L+ S+V ++ +RSG+
Sbjct: 134 ---CMATTEAVIDFGEDENIEDGVLDEDDSRVGEI-----------------VRSGVHVA 173
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
I+G PN GKS+L+N L +++ +IV++IPGTTRD++E LD+GG+PVIL DTAGLR + D
Sbjct: 174 IMGPPNAGKSTLLNKLTKREAAIVSNIPGTTRDIVEVKLDLGGFPVILCDTAGLR-ESED 232
Query: 430 IIETEGNLLEKN 441
IE EG KN
Sbjct: 233 TIEMEGIKRAKN 244
>gi|402904709|ref|XP_003915183.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial isoform 1
[Papio anubis]
Length = 492
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 135/338 (39%), Positives = 181/338 (53%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CG++VIR SGP + +AL+ + D + R+ASLR + DP S LD L LWFP
Sbjct: 43 QGRCGIAVIRTSGPSSGHALRILTAARD--LPPARHASLRLLSDPCSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E
Sbjct: 101 GPRSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ IL
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGILE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+V L ++ H+ + + G R+RSG V+ N
Sbjct: 221 QADIEVRALEVALGAHLRDARR-GQRLRSGAHVVVT------------------GPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K S++ EP
Sbjct: 262 KSSLVNL---------LSRK--------PVSIVSPEP----------------------- 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 318
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 51/82 (62%), Gaps = 5/82 (6%)
Query: 18 SRRCSHLAIKN---TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYAS 74
+RR S A TIFALSSG G+CG++VIR SGP + +AL+ + D +P R+AS
Sbjct: 21 TRRSSGAAAPGSGATIFALSSGQGRCGIAVIRTSGPSSGHALRILTAARD--LPPARHAS 78
Query: 75 LRNIVDPVSKVVLDEGLCLWFP 96
LR + DP S LD L LWFP
Sbjct: 79 LRLLSDPCSGEPLDRALVLWFP 100
>gi|402904711|ref|XP_003915184.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial isoform 2
[Papio anubis]
Length = 471
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 135/338 (39%), Positives = 181/338 (53%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CG++VIR SGP + +AL+ + D + R+ASLR + DP S LD L LWFP
Sbjct: 43 QGRCGIAVIRTSGPSSGHALRILTAARD--LPPARHASLRLLSDPCSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E
Sbjct: 101 GPRSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ IL
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGILE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+V L ++ H+ + + G R+RSG V+ N
Sbjct: 221 QADIEVRALEVALGAHLRDARR-GQRLRSGAHVVVT------------------GPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K S++ EP
Sbjct: 262 KSSLVNL---------LSRK--------PVSIVSPEP----------------------- 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 318
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 51/82 (62%), Gaps = 5/82 (6%)
Query: 18 SRRCSHLAIKN---TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYAS 74
+RR S A TIFALSSG G+CG++VIR SGP + +AL+ + D +P R+AS
Sbjct: 21 TRRSSGAAAPGSGATIFALSSGQGRCGIAVIRTSGPSSGHALRILTAARD--LPPARHAS 78
Query: 75 LRNIVDPVSKVVLDEGLCLWFP 96
LR + DP S LD L LWFP
Sbjct: 79 LRLLSDPCSGEPLDRALVLWFP 100
>gi|297276443|ref|XP_001114421.2| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like,
partial [Macaca mulatta]
Length = 330
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 134/338 (39%), Positives = 181/338 (53%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CG++VIR SGP + +AL+ + D + R+ASLR + DP S LD L LWFP
Sbjct: 43 QGRCGIAVIRTSGPSSGHALRILTAARD--LPPARHASLRLLSDPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E
Sbjct: 101 GPRSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+V L ++ H+ + + G R+RSG V+ N
Sbjct: 221 QADIEVRALEVALGAHLRDARR-GQRLRSGAHVVVT------------------GPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K S++ EP
Sbjct: 262 KSSLVNL---------LSRKP--------VSIVSPEP----------------------- 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 318
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 51/82 (62%), Gaps = 5/82 (6%)
Query: 18 SRRCSHLAIKN---TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYAS 74
+RR S A TIFALSSG G+CG++VIR SGP + +AL+ + D +P R+AS
Sbjct: 21 TRRSSGAAAPGSGATIFALSSGQGRCGIAVIRTSGPSSGHALRILTAARD--LPPARHAS 78
Query: 75 LRNIVDPVSKVVLDEGLCLWFP 96
LR + DP S LD L LWFP
Sbjct: 79 LRLLSDPRSGEPLDRALVLWFP 100
>gi|193082991|ref|NP_116009.2| tRNA modification GTPase GTPBP3, mitochondrial isoform V [Homo
sapiens]
gi|313104112|sp|Q969Y2.2|GTPB3_HUMAN RecName: Full=tRNA modification GTPase GTPBP3, mitochondrial;
AltName: Full=GTP-binding protein 3; AltName:
Full=Mitochondrial GTP-binding protein 1; Flags:
Precursor
gi|13650157|gb|AAK37568.1| mitochondrial GTP-binding protein 1 [Homo sapiens]
Length = 492
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/338 (39%), Positives = 183/338 (54%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CG++VIR SGP + +AL+ + D ++ R+ASLR + DP S LD L LWFP
Sbjct: 43 QGRCGIAVIRTSGPASGHALRILTAPRDLPLA--RHASLRLLSDPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E
Sbjct: 101 GPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+V L ++ H+ + + G R+RSG+ V+ N
Sbjct: 221 QADIEVRALQVALGAHLRDARR-GQRLRSGVHVVVT------------------GPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K S++ EP
Sbjct: 262 KSSLVNL---------LSRK--------PVSIVSPEP----------------------- 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 318
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+ + D +P R+ASLR + DP S LD
Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRD--LPLARHASLRLLSDPRSGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|332253640|ref|XP_003275944.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial [Nomascus
leucogenys]
Length = 415
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/338 (39%), Positives = 182/338 (53%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CG++VIR SGP + +AL+ + D + R+ASLR + DP S LD L LWFP
Sbjct: 43 QGRCGIAVIRTSGPASGHALRILTAPRD--LPPARHASLRLLSDPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG +AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E
Sbjct: 101 SPQSFTGEDCVEFHVHGGLAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+V L ++ H+ + + G R+RSG V+ N
Sbjct: 221 QADIEVRALEVALGAHLRDARR-GQRLRSGAHVVVT------------------GPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K S++ EP
Sbjct: 262 KSSLVNL---------LSRKP--------VSIVSPEP----------------------- 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 318
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+ + D +P R+ASLR + DP S LD
Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRD--LPPARHASLRLLSDPRSGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|17939531|gb|AAH19261.1| GTP binding protein 3 (mitochondrial) [Homo sapiens]
gi|123982804|gb|ABM83143.1| GTP binding protein 3 (mitochondrial) [synthetic construct]
gi|123997475|gb|ABM86339.1| GTP binding protein 3 (mitochondrial) [synthetic construct]
Length = 492
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/338 (39%), Positives = 183/338 (54%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CG++VIR SGP + +AL+ + D ++ R+ASLR + DP S LD L LWFP
Sbjct: 43 QGRCGIAVIRTSGPASGHALRILTAPRDLPLA--RHASLRLLSDPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E
Sbjct: 101 GPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+V L ++ H+ + + G R+RSG+ V+ N
Sbjct: 221 QADIEVRALQVALGAHLRDARR-GQRLRSGVHVVVT------------------GPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K S++ EP
Sbjct: 262 KSSLVNL---------LSRK--------PVSIVSPEP----------------------- 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 318
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+ + D +P R+ASLR + DP S LD
Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRD--LPLARHASLRLLSDPRSGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|334327070|ref|XP_001370184.2| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
[Monodelphis domestica]
Length = 535
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/215 (52%), Positives = 146/215 (67%), Gaps = 3/215 (1%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GKCGV+VIR SGP + A+ +A + + +PR A LR + PVS LD GL LWFP
Sbjct: 164 GKCGVAVIRTSGPASGPAVLGLAAL--RALPQPRLAKLRLLKHPVSSEPLDRGLVLWFPG 221
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGEDC EF VHG AV++A+LGAL +PG RPAE GEF+KRAF N KL LT+ E L
Sbjct: 222 PHSFTGEDCAEFHVHGGPAVVSAVLGALGGVPGCRPAEAGEFTKRAFQNGKLSLTEVEGL 281
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
GDLI AETE QR++AL Q++G L QL W + + +LA +EAYIDFSED+ IE+ +L
Sbjct: 282 GDLIHAETEAQRRQALRQLQGELGQLCRAWGETLTTALAHLEAYIDFSEDDNIEEGVLEW 341
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
V V L ++E H++ + + G R+RSG VI
Sbjct: 342 VDGTVQGLREALEAHLQDARR-GQRLRSGAHVVIA 375
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
+ TIFALSSG GKCGV+VIR SGP + A+ +A + +P+PR A LR + PVS
Sbjct: 153 RATIFALSSGQGKCGVAVIRTSGPASGPAVLGLAAL--RALPQPRLAKLRLLKHPVSSEP 210
Query: 87 LDEGLCLWFP 96
LD GL LWFP
Sbjct: 211 LDRGLVLWFP 220
>gi|193082993|ref|NP_001122327.1| tRNA modification GTPase GTPBP3, mitochondrial isoform III [Homo
sapiens]
Length = 471
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/338 (39%), Positives = 183/338 (54%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CG++VIR SGP + +AL+ + D ++ R+ASLR + DP S LD L LWFP
Sbjct: 43 QGRCGIAVIRTSGPASGHALRILTAPRDLPLA--RHASLRLLSDPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E
Sbjct: 101 GPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+V L ++ H+ + + G R+RSG+ V+ N
Sbjct: 221 QADIEVRALQVALGAHLRDARR-GQRLRSGVHVVVT------------------GPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K S++ EP
Sbjct: 262 KSSLVNL---------LSRK--------PVSIVSPEP----------------------- 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 318
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+ + D +P R+ASLR + DP S LD
Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRD--LPLARHASLRLLSDPRSGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|66826549|ref|XP_646629.1| GTP-binding protein 3 [Dictyostelium discoideum AX4]
gi|74897384|sp|Q55C52.1|GTPB3_DICDI RecName: Full=tRNA modification GTPase gtpbp3, mitochondrial;
AltName: Full=GTP-binding protein 3; Flags: Precursor
gi|60474527|gb|EAL72464.1| GTP-binding protein 3 [Dictyostelium discoideum AX4]
Length = 512
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 131/341 (38%), Positives = 182/341 (53%), Gaps = 64/341 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPD---QKVSKPRYASLRNIVDPVSEVVLDEGLCLW 155
GK GV++IRVSGP ++ + D + K RYA+L +P + LD+G+ +W
Sbjct: 36 GKSGVAIIRVSGPQAETVIRKLIKKSDVDKNEEIKSRYATLSTFYNPKTNEQLDKGMFIW 95
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
FP PNSFTGED EF +HG AVI + A+ + G RP+E GEF+KRAF N K+DLTQ
Sbjct: 96 FPSPNSFTGEDVVEFHIHGGRAVIYETMEAIGLIEGTRPSEQGEFTKRAFENGKMDLTQV 155
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
E L DL+ A T Q++ AL
Sbjct: 156 EGLSDLLDASTSFQKKIALK---------------------------------------- 175
Query: 276 LNTVRSQVVQLHGSI-EKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
Q+ GSI E ++ L IR+ A +EA+IDF +D ++ I+
Sbjct: 176 ---------QMQGSISEFYLSLRKDL---IRAS-------AYMEAFIDFGDDAELDPEIV 216
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
+ R++++ + I++H+ K G R+R G IVG PN GKSSL+N L ++ SIV+
Sbjct: 217 DQSRNRIISIRDKIQQHLN-DGKRGERLRDGANIAIVGPPNAGKSSLINLLTNRKASIVS 275
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I GTTRD++E LDI GYPVI+ DTAGLR +T+D IE EG
Sbjct: 276 PIAGTTRDIVEVILDIDGYPVIIGDTAGLRNSTNDQIEIEG 316
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPD---QKVPKPRYASLRNIVDPV 82
IK+TI+ LSSG GK GV++IRVSGP ++ + D + K RYA+L +P
Sbjct: 24 IKDTIYNLSSGVGKSGVAIIRVSGPQAETVIRKLIKKSDVDKNEEIKSRYATLSTFYNPK 83
Query: 83 SKVVLDEGLCLWFP 96
+ LD+G+ +WFP
Sbjct: 84 TNEQLDKGMFIWFP 97
>gi|306518614|ref|NP_001182351.1| tRNA modification GTPase GTPBP3, mitochondrial isoform VII [Homo
sapiens]
Length = 514
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/337 (39%), Positives = 183/337 (54%), Gaps = 62/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+CG++VIR SGP + +AL+ + D ++ R+ASLR + DP S LD L LWFP
Sbjct: 66 GRCGIAVIRTSGPASGHALRILTAPRDLPLA--RHASLRLLSDPRSGEPLDRALVLWFPG 123
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E L
Sbjct: 124 PQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEGL 183
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 184 ADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLEQ 243
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+V L ++ H+ + + G R+RSG+ V+ N +
Sbjct: 244 ADIEVRALQVALGAHLRDARR-GQRLRSGVHVVVT------------------GPPNAGK 284
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S +V L LS K S++ EP G
Sbjct: 285 SSLVNL---------LSRK--------PVSIVSPEP-----------------------G 304
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 305 TTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 340
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+ + D +P R+ASLR + DP S LD
Sbjct: 57 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRD--LPLARHASLRLLSDPRSGEPLD 114
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 115 RALVLWFP 122
>gi|402904713|ref|XP_003915185.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial isoform 3
[Papio anubis]
Length = 514
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 135/337 (40%), Positives = 181/337 (53%), Gaps = 62/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+CG++VIR SGP + +AL+ + D + R+ASLR + DP S LD L LWFP
Sbjct: 66 GRCGIAVIRTSGPSSGHALRILTAARD--LPPARHASLRLLSDPCSGEPLDRALVLWFPG 123
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E L
Sbjct: 124 PRSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEGL 183
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ IL
Sbjct: 184 ADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGILEQ 243
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+V L ++ H+ + + G R+RSG V+ N +
Sbjct: 244 ADIEVRALEVALGAHLRDARR-GQRLRSGAHVVVT------------------GPPNAGK 284
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S +V L LS K S++ EP G
Sbjct: 285 SSLVNL---------LSRK--------PVSIVSPEP-----------------------G 304
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 305 TTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 340
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 51/82 (62%), Gaps = 5/82 (6%)
Query: 18 SRRCSHLAIKN---TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYAS 74
+RR S A TIFALSSG G+CG++VIR SGP + +AL+ + D +P R+AS
Sbjct: 43 TRRSSGAAAPGSGATIFALSSGQGRCGIAVIRTSGPSSGHALRILTAARD--LPPARHAS 100
Query: 75 LRNIVDPVSKVVLDEGLCLWFP 96
LR + DP S LD L LWFP
Sbjct: 101 LRLLSDPCSGEPLDRALVLWFP 122
>gi|195999388|ref|XP_002109562.1| hypothetical protein TRIADDRAFT_53723 [Trichoplax adhaerens]
gi|190587686|gb|EDV27728.1| hypothetical protein TRIADDRAFT_53723 [Trichoplax adhaerens]
Length = 494
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 112/216 (51%), Positives = 149/216 (68%), Gaps = 4/216 (1%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
HG GV+VIRV+GP+T A+K M + KPRYASLR I P + ++D+GL LWFP
Sbjct: 28 HGVSGVAVIRVTGPETSEAVKLMT--KSDNLPKPRYASLRKIYQPSTGDLVDKGLILWFP 85
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
PNSFTGED EFQVHG AV+ IL +L+++ GL PA G+F++RAF N KLDLT+ E
Sbjct: 86 GPNSFTGEDLAEFQVHGGSAVVEGILTSLSEIDGLYPAMAGDFTRRAFENEKLDLTEVEG 145
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI A+TE QR++AL QM G+L QLY W + +L+S+A +EA IDFSED +IED IL
Sbjct: 146 LADLIHAQTEAQRKQALRQMDGHLSQLYKIWSKTLLKSVADIEATIDFSED-VIEDGILT 204
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
V++ V +L + H+E + G ++RSG+ VI
Sbjct: 205 NVKNSVNKLAKEVRNHLE-DGRRGEKLRSGVNVVIA 239
>gi|42520794|ref|NP_966709.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|99034610|ref|ZP_01314568.1| hypothetical protein Wendoof_01000618 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
gi|81831244|sp|Q73GH3.1|MNME_WOLPM RecName: Full=tRNA modification GTPase MnmE
gi|42410534|gb|AAS14643.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 508
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 140/337 (41%), Positives = 192/337 (56%), Gaps = 66/337 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+VIR+SG ALK++ + +K KPR+A+L ++ D S+++ D G+ ++FP
Sbjct: 16 GKSGVAVIRISGN---YALKALNHFHIKKEIKPRFATLVDLYDDSSQLI-DNGIIIYFPA 71
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E QVHGS AVI IL L+K+ + A+PGEFS RAF N K DLTQ E +
Sbjct: 72 PNSFTGEDVIELQVHGSKAVIKIILEELSKVFVM--AKPGEFSLRAFLNGKFDLTQIEGI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET++Q ++A+ KQ+ E LE L S
Sbjct: 130 ADLIDAETKMQAKQAI-------KQISGE-----LERLYS-------------------N 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R +++ + IE AYIDF ED E + L +
Sbjct: 159 WRQRLITIQSKIE---------------------------AYIDFPEDIWAEKSELEKIN 191
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++V L I++H+ N+ G R+R G+ VI GEPNVGKS+L NFL ++ I+IV+ G
Sbjct: 192 NEVQSLVQLIQEHLN-DNRRGERLREGLHIVITGEPNVGKSTLFNFLAKRDIAIVSEYAG 250
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD++E H+DIGGYP+IL DTAG+R +SD IE EG
Sbjct: 251 TTRDILEAHIDIGGYPIILSDTAGIR-ESSDPIELEG 286
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 141/284 (49%), Gaps = 68/284 (23%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALS+ GK GV+VIR+SG ALK++ + +K KPR+A+L ++ D S+++ D
Sbjct: 7 TIFALSTVFGKSGVAVIRISGN---YALKALNHFHIKKEIKPRFATLVDLYDDSSQLI-D 62
Query: 89 EGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVL 148
G+ ++FP +G D + + +V + A ++ I++ +S+V +
Sbjct: 63 NGIIIYFPAPNS-------FTGEDVI----------ELQVHGSK-AVIKIILEELSKVFV 104
Query: 149 DEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNN 208
KP F+ LR G+F
Sbjct: 105 -------MAKPGEFS----------------------------LRAFLNGKF-------- 121
Query: 209 KLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSED 268
DLTQ E + DLI AET++Q ++A+ Q+ G L++LYS WRQ ++ + +EAYIDF ED
Sbjct: 122 --DLTQIEGIADLIDAETKMQAKQAIKQISGELERLYSNWRQRLITIQSKIEAYIDFPED 179
Query: 269 EIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
E + L + ++V L I++H+ N+ G R+R G+ VI
Sbjct: 180 IWAEKSELEKINNEVQSLVQLIQEHLN-DNRRGERLREGLHIVI 222
>gi|13786071|gb|AAK39555.1| mitochondrial GTP binding protein 1 [Homo sapiens]
gi|14042398|dbj|BAB55228.1| unnamed protein product [Homo sapiens]
gi|16877978|gb|AAH17207.1| GTP binding protein 3 (mitochondrial) [Homo sapiens]
gi|19335745|gb|AAL85493.1| GTP-binding protein isoform V [Homo sapiens]
gi|119605003|gb|EAW84597.1| GTP binding protein 3 (mitochondrial), isoform CRA_a [Homo sapiens]
gi|158257290|dbj|BAF84618.1| unnamed protein product [Homo sapiens]
Length = 492
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 134/338 (39%), Positives = 182/338 (53%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CG++VIR SGP + +AL+ + D ++ R+ASLR + DP S LD L LWFP
Sbjct: 43 QGRCGIAVIRTSGPASGHALRILTAPRDLPLA--RHASLRLLSDPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E
Sbjct: 101 GPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+V L ++ H+ + + G R+RSG V+ N
Sbjct: 221 QADIEVRALQVALGAHLRDARR-GQRLRSGAHVVVT------------------GPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K S++ EP
Sbjct: 262 KSSLVNL---------LSRK--------PVSIVSPEP----------------------- 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 318
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+ + D +P R+ASLR + DP S LD
Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRD--LPLARHASLRLLSDPRSGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|225629758|ref|ZP_03787706.1| tRNA modification GTPase [Wolbachia endosymbiont of Muscidifurax
uniraptor]
gi|225591387|gb|EEH12479.1| tRNA modification GTPase [Wolbachia endosymbiont of Muscidifurax
uniraptor]
Length = 439
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 140/337 (41%), Positives = 192/337 (56%), Gaps = 66/337 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+VIR+SG ALK++ + +K KPR+A+L ++ D S+++ D G+ ++FP
Sbjct: 16 GKSGVAVIRISGN---YALKALNHFHIKKEIKPRFATLVDLYDDSSQLI-DNGIIIYFPA 71
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E QVHGS AVI IL L+K+ + A+PGEFS RAF N K DLTQ E +
Sbjct: 72 PNSFTGEDVIELQVHGSKAVIKIILEELSKVFVM--AKPGEFSLRAFLNGKFDLTQIEGI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET++Q ++A+ KQ+ E LE L S
Sbjct: 130 ADLIDAETKMQAKQAI-------KQISGE-----LERLYS-------------------N 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R +++ + IE AYIDF ED E + L +
Sbjct: 159 WRQRLITIQSKIE---------------------------AYIDFPEDIWAEKSELEKIN 191
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++V L I++H+ N+ G R+R G+ VI GEPNVGKS+L NFL ++ I+IV+ G
Sbjct: 192 NEVQSLVQLIQEHLN-DNRRGERLREGLHIVITGEPNVGKSTLFNFLAKRDIAIVSEYAG 250
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD++E H+DIGGYP+IL DTAG+R +SD IE EG
Sbjct: 251 TTRDILEAHIDIGGYPIILSDTAGIR-ESSDPIELEG 286
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 141/284 (49%), Gaps = 68/284 (23%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALS+ GK GV+VIR+SG ALK++ + +K KPR+A+L ++ D S+++ D
Sbjct: 7 TIFALSTVFGKSGVAVIRISGN---YALKALNHFHIKKEIKPRFATLVDLYDDSSQLI-D 62
Query: 89 EGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVL 148
G+ ++FP +G D + + +V + A ++ I++ +S+V +
Sbjct: 63 NGIIIYFPAPNS-------FTGEDVI----------ELQVHGSK-AVIKIILEELSKVFV 104
Query: 149 DEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNN 208
KP F+ LR G+F
Sbjct: 105 -------MAKPGEFS----------------------------LRAFLNGKF-------- 121
Query: 209 KLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSED 268
DLTQ E + DLI AET++Q ++A+ Q+ G L++LYS WRQ ++ + +EAYIDF ED
Sbjct: 122 --DLTQIEGIADLIDAETKMQAKQAIKQISGELERLYSNWRQRLITIQSKIEAYIDFPED 179
Query: 269 EIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
E + L + ++V L I++H+ N+ G R+R G+ VI
Sbjct: 180 IWAEKSELEKINNEVQSLVQLIQEHLN-DNRRGERLREGLHIVI 222
>gi|13786073|gb|AAK39556.1| mitochondrial GTP binding protein 2 [Homo sapiens]
gi|13786075|gb|AAK39557.1| mitochondrial GTP binding protein 3 [Homo sapiens]
Length = 471
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 134/338 (39%), Positives = 182/338 (53%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CG++VIR SGP + +AL+ + D ++ R+ASLR + DP S LD L LWFP
Sbjct: 43 QGRCGIAVIRTSGPASGHALRILTAPRDLPLA--RHASLRLLSDPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E
Sbjct: 101 GPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+V L ++ H+ + + G R+RSG V+ N
Sbjct: 221 QADIEVRALQVALGAHLRDARR-GQRLRSGAHVVVT------------------GPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K S++ EP
Sbjct: 262 KSSLVNL---------LSRK--------PVSIVSPEP----------------------- 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 318
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+ + D +P R+ASLR + DP S LD
Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRD--LPLARHASLRLLSDPRSGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|397493941|ref|XP_003817854.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial isoform 1
[Pan paniscus]
Length = 492
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 134/338 (39%), Positives = 182/338 (53%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CG++VIR SGP + +AL+ + D ++ R+ASLR + DP S LD L LWFP
Sbjct: 43 QGRCGIAVIRTSGPASGHALRILTAPRDLPLA--RHASLRLLSDPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E
Sbjct: 101 GPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCRGWAETVTKALAHVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+V L ++ H+ + + G R+RSG V+ N
Sbjct: 221 QADIKVRALEVALGAHLRDARR-GQRLRSGAHVVVT------------------GPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K S++ EP
Sbjct: 262 KSSLVNL---------LSRK--------PVSIVSPEP----------------------- 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 318
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+ + D +P R+ASLR + DP S LD
Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRD--LPLARHASLRLLSDPRSGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|397493943|ref|XP_003817855.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial isoform 2
[Pan paniscus]
Length = 471
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 134/338 (39%), Positives = 182/338 (53%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CG++VIR SGP + +AL+ + D ++ R+ASLR + DP S LD L LWFP
Sbjct: 43 QGRCGIAVIRTSGPASGHALRILTAPRDLPLA--RHASLRLLSDPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E
Sbjct: 101 GPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCRGWAETVTKALAHVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+V L ++ H+ + + G R+RSG V+ N
Sbjct: 221 QADIKVRALEVALGAHLRDARR-GQRLRSGAHVVVT------------------GPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K S++ EP
Sbjct: 262 KSSLVNL---------LSRK--------PVSIVSPEP----------------------- 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 318
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+ + D +P R+ASLR + DP S LD
Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRD--LPLARHASLRLLSDPRSGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|426387700|ref|XP_004060301.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial isoform 1
[Gorilla gorilla gorilla]
Length = 492
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 134/338 (39%), Positives = 182/338 (53%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CG++VIR SGP + +AL+ + D ++ R+ASLR + DP S LD L LWFP
Sbjct: 43 QGRCGIAVIRTSGPASGHALRILTAPRDLPLA--RHASLRLLSDPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E
Sbjct: 101 GPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+V L ++ H+ + + G R+RSG V+ N
Sbjct: 221 QADIEVRALEVALGAHLRDARR-GQRLRSGAHVVVT------------------GPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K S++ EP
Sbjct: 262 KSSLVNL---------LSRK--------PVSIVSPEP----------------------- 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 318
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+ + D +P R+ASLR + DP S LD
Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRD--LPLARHASLRLLSDPRSGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|426387702|ref|XP_004060302.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial isoform 2
[Gorilla gorilla gorilla]
Length = 471
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 134/338 (39%), Positives = 182/338 (53%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CG++VIR SGP + +AL+ + D ++ R+ASLR + DP S LD L LWFP
Sbjct: 43 QGRCGIAVIRTSGPASGHALRILTAPRDLPLA--RHASLRLLSDPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E
Sbjct: 101 GPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+V L ++ H+ + + G R+RSG V+ N
Sbjct: 221 QADIEVRALEVALGAHLRDARR-GQRLRSGAHVVVT------------------GPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K S++ EP
Sbjct: 262 KSSLVNL---------LSRK--------PVSIVSPEP----------------------- 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 318
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+ + D +P R+ASLR + DP S LD
Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRD--LPLARHASLRLLSDPRSGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|410218820|gb|JAA06629.1| GTP binding protein 3 (mitochondrial) [Pan troglodytes]
gi|410253878|gb|JAA14906.1| GTP binding protein 3 (mitochondrial) [Pan troglodytes]
gi|410306516|gb|JAA31858.1| GTP binding protein 3 (mitochondrial) [Pan troglodytes]
gi|410330759|gb|JAA34326.1| GTP binding protein 3 (mitochondrial) [Pan troglodytes]
Length = 492
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 134/338 (39%), Positives = 182/338 (53%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CG++VIR SGP + +AL+ + D ++ R+ASLR + DP S LD L LWFP
Sbjct: 43 QGRCGIAVIRTSGPASGHALRILTAPRDLPLA--RHASLRLLSDPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E
Sbjct: 101 GPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+V L ++ H+ + + G R+RSG V+ N
Sbjct: 221 QADIKVRALEVALGAHLRDARR-GQRLRSGAHVVVT------------------GPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K S++ EP
Sbjct: 262 KSSLVNL---------LSRK--------PVSIVSPEP----------------------- 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 318
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+ + D +P R+ASLR + DP S LD
Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRD--LPLARHASLRLLSDPRSGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|355693956|gb|AER99508.1| GTP binding protein 3 [Mustela putorius furo]
Length = 478
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 134/339 (39%), Positives = 180/339 (53%), Gaps = 64/339 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+CG++VIR SGP + +AL+S+ D + R A LR + P S LD L LWFP
Sbjct: 29 GRCGIAVIRTSGPASGHALRSLTAPRD--LPPARSACLRLLSHPRSGEPLDRALVLWFPG 86
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEP--GEFSKRAFFNNKLDLTQTE 216
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF + KL LT+ E
Sbjct: 87 PQSFTGEDCAEFHVHGGPAVVSGVLQALGSVPGLRPAEAEAGEFTRRAFAHGKLSLTEVE 146
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 147 GLADLIHAETEAQRRQALRQLDGGLGHLRHGWAKTLTKALAHVEAYIDFGEDDNLEEGVL 206
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
SQV +L ++ H+ + + G R+RSG V+ N
Sbjct: 207 ERADSQVRELELALSAHLRDARR-GQRLRSGAHVVVA------------------GPPNA 247
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+S +V L LS K +SIV+
Sbjct: 248 GKSSLVNL---------LSRK-------------------------------PVSIVSPE 267
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
PGTTRDV+E +D+ G+P +L DTAGLR +E EG
Sbjct: 268 PGTTRDVLEIPVDLAGFPALLSDTAGLREGVGP-VEQEG 305
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+S+ D +P R A LR + P S LD
Sbjct: 20 TIFALSSGQGRCGIAVIRTSGPASGHALRSLTAPRD--LPPARSACLRLLSHPRSGEPLD 77
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 78 RALVLWFP 85
>gi|426387704|ref|XP_004060303.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial isoform 3
[Gorilla gorilla gorilla]
Length = 514
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 134/337 (39%), Positives = 182/337 (54%), Gaps = 62/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+CG++VIR SGP + +AL+ + D ++ R+ASLR + DP S LD L LWFP
Sbjct: 66 GRCGIAVIRTSGPASGHALRILTAPRDLPLA--RHASLRLLSDPRSGEPLDRALVLWFPG 123
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E L
Sbjct: 124 PQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEGL 183
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 184 ADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLEQ 243
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+V L ++ H+ + + G R+RSG V+ N +
Sbjct: 244 ADIEVRALEVALGAHLRDARR-GQRLRSGAHVVVT------------------GPPNAGK 284
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S +V L LS K S++ EP G
Sbjct: 285 SSLVNL---------LSRK--------PVSIVSPEP-----------------------G 304
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 305 TTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 340
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+ + D +P R+ASLR + DP S LD
Sbjct: 57 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRD--LPLARHASLRLLSDPRSGEPLD 114
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 115 RALVLWFP 122
>gi|221042034|dbj|BAH12694.1| unnamed protein product [Homo sapiens]
Length = 514
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 134/337 (39%), Positives = 182/337 (54%), Gaps = 62/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+CG++VIR SGP + +AL+ + D ++ R+ASLR + DP S LD L LWFP
Sbjct: 66 GRCGIAVIRTSGPASGHALRILTAPRDLPLA--RHASLRLLSDPRSGEPLDRALVLWFPG 123
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E L
Sbjct: 124 PQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEGL 183
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 184 ADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLEQ 243
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+V L ++ H+ + + G R+RSG V+ N +
Sbjct: 244 ADIEVRALQVALGAHLRDARR-GQRLRSGAHVVVT------------------GPPNAGK 284
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S +V L LS K S++ EP G
Sbjct: 285 SSLVNL---------LSRK--------PVSIVSPEP-----------------------G 304
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 305 TTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 340
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+ + D +P R+ASLR + DP S LD
Sbjct: 57 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRD--LPLARHASLRLLSDPRSGEPLD 114
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 115 RALVLWFP 122
>gi|397493945|ref|XP_003817856.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial isoform 3
[Pan paniscus]
Length = 514
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 134/337 (39%), Positives = 182/337 (54%), Gaps = 62/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+CG++VIR SGP + +AL+ + D ++ R+ASLR + DP S LD L LWFP
Sbjct: 66 GRCGIAVIRTSGPASGHALRILTAPRDLPLA--RHASLRLLSDPRSGEPLDRALVLWFPG 123
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E L
Sbjct: 124 PQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEGL 183
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 184 ADLIHAETEAQRRQALRQLDGELGHLCRGWAETVTKALAHVEAYIDFGEDDNLEEGVLEQ 243
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+V L ++ H+ + + G R+RSG V+ N +
Sbjct: 244 ADIKVRALEVALGAHLRDARR-GQRLRSGAHVVVT------------------GPPNAGK 284
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S +V L LS K S++ EP G
Sbjct: 285 SSLVNL---------LSRK--------PVSIVSPEP-----------------------G 304
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 305 TTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 340
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+ + D +P R+ASLR + DP S LD
Sbjct: 57 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRD--LPLARHASLRLLSDPRSGEPLD 114
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 115 RALVLWFP 122
>gi|167519733|ref|XP_001744206.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777292|gb|EDQ90909.1| predicted protein [Monosiga brevicollis MX1]
Length = 477
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 130/338 (38%), Positives = 191/338 (56%), Gaps = 62/338 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V+R+SGP+ L A + + + PR A++ + DP+++ +LD+ L L FP
Sbjct: 22 GKAGVAVVRISGPEALAAAGQL--LGKRALPIPRQATVARLSDPLTDDLLDQALVLTFPG 79
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E +HGS AV+ +L AL +L GL PA PGEF+KRAF + KL LTQ E L
Sbjct: 80 PRSFTGEDVVELHLHGSRAVVAGVLDALGRLQGLAPAPPGEFTKRAFAHGKLGLTQVEGL 139
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET QRQ+AL ++G+ ++L WRQ +L +LA +EAYIDFSEDE IE++ ++
Sbjct: 140 ADLISAETTSQRQQALRHLEGDAQKLLLGWRQELLHALALLEAYIDFSEDENIEEDAFSS 199
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+V + + +H+ ++ G R+R G++ V+
Sbjct: 200 ASEKVGHMVEEMRRHVA-DSRAGQRVRDGVRIVL-------------------------- 232
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
SG+ +V GKSSL+N+ C+++ +IVT IPG
Sbjct: 233 -------------------------SGLPNV-------GKSSLLNYFCRQERAIVTDIPG 260
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTS-DIIETEG 435
TTRD++ L++ G+PVI +DTAG+R D +E EG
Sbjct: 261 TTRDLLTVDLELRGFPVIFVDTAGIRFGDQVDRVEQEG 298
>gi|219114453|ref|XP_002176397.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217402643|gb|EEC42633.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 609
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 130/338 (38%), Positives = 183/338 (54%), Gaps = 55/338 (16%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR---NIVDPVSEVVLDEGLCLWFP 157
V+VIR+SGP L+ + P + + KPR A+LR ++ DP +VVLD+ L L+F
Sbjct: 130 TAVAVIRLSGPQAGVILQRLT--PGRPLPKPRTAALRKLHDLDDP--KVVLDQALVLYFS 185
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
PNSFTG+D E QVHGS AV+ A+L L R AEPGEF++RA+ KLD Q EA
Sbjct: 186 GPNSFTGDDVVELQVHGSRAVVTAVLETLGT--AARLAEPGEFTQRAWLAGKLDALQVEA 243
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DL+ A+T QRQ+AL Q+ G L +Y WR +++ LA EA IDF +DE ++D +L
Sbjct: 244 LADLLTADTATQRQQALAQLDGQLSAVYDTWRDMLVAGLAHAEAVIDFGDDERLDDALL- 302
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
D + ++ +DN+ V
Sbjct: 303 --------------------------------------------DEEDQQLAQDNVWGGV 318
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+ L S+ + ++ + + G +R G++ IVG PN GKSSL N L + +IV+
Sbjct: 319 VGNMEVLERSMRRQLQDARR-GELVRQGLQIAIVGPPNAGKSSLFNILADRDAAIVSPTA 377
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E L++GG +L DTAG+RT T D IE EG
Sbjct: 378 GTTRDVLELSLNLGGVKCVLQDTAGVRTFTDDAIEMEG 415
>gi|328541700|ref|YP_004301809.1| tRNA modification GTPase mnmE [Polymorphum gilvum SL003B-26A1]
gi|326411452|gb|ADZ68515.1| tRNA modification GTPase mnmE [Polymorphum gilvum SL003B-26A1]
Length = 450
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 128/335 (38%), Positives = 178/335 (53%), Gaps = 64/335 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+VIRVSGP T+ ++ ++ K PR +L + P + +D+ + L+F P+
Sbjct: 15 AGVAVIRVSGPLTVEIVRKLSG----KAPTPRRIALGLLRRPDTGEAIDQAVVLFFKGPS 70
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGED EFQ HG AV+ A+L L PG RPAE GEF++RAF N ++DLT+ E L D
Sbjct: 71 SFTGEDVAEFQCHGGRAVVAAVLECLAAFPGTRPAEAGEFTRRAFDNGRMDLTEVEGLAD 130
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI AETE QR++A QM+G L +LY W R
Sbjct: 131 LIAAETEAQRRQAFRQMEGWLGRLYDGW-------------------------------R 159
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
++VQ+ A +EA DF+++E + ++ + V
Sbjct: 160 GRLVQMR---------------------------AMIEADFDFADEEDVPGSVADGVWDA 192
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
L I+ H+E S + G R+R G++ V++G PN GKSSL+N L + ++IVT GTT
Sbjct: 193 AAGLLRDIDAHLEQSGR-GERLRQGLQVVLMGAPNAGKSSLLNALAGRDVAIVTEEAGTT 251
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
RDVIE HLD+ GYPV L DTAGLR +E EG
Sbjct: 252 RDVIEVHLDLDGYPVTLADTAGLRAEAGR-VEREG 285
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 157/346 (45%), Gaps = 73/346 (21%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ +TI+ALSSG GV+VIRVSGP T+ ++ ++ K P PR +L + P +
Sbjct: 1 MTDTIYALSSGPVPAGVAVIRVSGPLTVEIVRKLSG----KAPTPRRIALGLLRRPDTGE 56
Query: 86 VLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSE 145
+D+ + L+F K + + + V++ + R +V V E
Sbjct: 57 AIDQAVVLFF----------------------KGPSSFTGEDVAEFQCHGGRAVVAAVLE 94
Query: 146 VVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAF 205
CL +F G E GEF++RAF
Sbjct: 95 -------CL-----AAFPGTRPAE---------------------------AGEFTRRAF 115
Query: 206 FNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDF 265
N ++DLT+ E L DLI AETE QR++A QM+G L +LY WR +++ A +EA DF
Sbjct: 116 DNGRMDLTEVEGLADLIAAETEAQRRQAFRQMEGWLGRLYDGWRGRLVQMRAMIEADFDF 175
Query: 266 SEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDF-- 323
+++E + ++ + V L I+ H+E S + G R+R G++ V+ A
Sbjct: 176 ADEEDVPGSVADGVWDAAAGLLRDIDAHLEQSGR-GERLRQGLQVVLMGAPNAGKSSLLN 234
Query: 324 ---SEDEIIEDNILNTVRSQVVQLHGSIEKH-IELSNKCGVRIRSG 365
D I T R V+++H ++ + + L++ G+R +G
Sbjct: 235 ALAGRDVAIVTEEAGTTR-DVIEVHLDLDGYPVTLADTAGLRAEAG 279
>gi|395330678|gb|EJF63061.1| tRNA modification GTPase TrmE [Dichomitus squalens LYAD-421 SS1]
Length = 571
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 137/344 (39%), Positives = 180/344 (52%), Gaps = 67/344 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMA-------CYPDQKVSKPRYASLRNIVDPVSEVVLDEG 151
GK GV+VIR+SGPD L M ++ +P ++V P S VLD+G
Sbjct: 108 GKAGVAVIRISGPDALKVWSGMVRTRAAGKGKAREREPEPWRMHRCSVVHPGSSEVLDDG 167
Query: 152 LCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLD 211
L ++F P SFT ED E VH A+I+++L A++ P RPAE GEF++RAF +LD
Sbjct: 168 LAVFFQGPKSFTTEDVLELHVHSGRAIISSVLNAISFFPFCRPAERGEFTRRAFEGGRLD 227
Query: 212 LTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEII 271
LTQ E L DLI AETE QR+ AL G + E R +EII
Sbjct: 228 LTQVEGLRDLIDAETESQRKLALKTAGGATRARLEELR------------------NEII 269
Query: 272 EDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIED 331
+ CLA VEA IDF E E IE+
Sbjct: 270 Q----------------------------------------CLALVEALIDFGEGEDIEE 289
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
+ + R +V++L +I+ H+ N+ G +RSGI+ I G PN GKSSL+NFL Q++ +
Sbjct: 290 GVFDQARIRVLKLRDTIQHHLS-DNRRGEIMRSGIRLAIFGPPNAGKSSLLNFLAQREAA 348
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IVT IPGTTRD++E LDI G PVI+ DTAGLR T DI+E G
Sbjct: 349 IVTPIPGTTRDILELSLDISGLPVIIADTAGLR-KTDDIVEQIG 391
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 126/298 (42%), Gaps = 75/298 (25%)
Query: 25 AIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMA-------CYPDQKVPKPRYASLRN 77
A + TI+ALS+ GK GV+VIR+SGPD L M ++ P+P +
Sbjct: 95 AQRRTIYALSTPPGKAGVAVIRISGPDALKVWSGMVRTRAAGKGKAREREPEPWRMHRCS 154
Query: 78 IVDPVSKVVLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR 137
+V P S VLD+GL ++F GP + + + V + S R
Sbjct: 155 VVHPGSSEVLDDGLAVFF-------------QGPKS---------FTTEDVLELHVHSGR 192
Query: 138 NIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGA---LTKLPGLRP 194
I+ V + +FP C G A G LT++ GLR
Sbjct: 193 AIISSVLNAI------SFFP---------FCRPAERGEFTR-RAFEGGRLDLTQVEGLR- 235
Query: 195 AEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILE 254
DL E +++ +L + A + L++L +E I++
Sbjct: 236 ----------------DLIDAET-----ESQRKLALKTAGGATRARLEELRNE----IIQ 270
Query: 255 SLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
LA VEA IDF E E IE+ + + R +V++L +I+ H+ N+ G +RSGI+ I
Sbjct: 271 CLALVEALIDFGEGEDIEEGVFDQARIRVLKLRDTIQHHLS-DNRRGEIMRSGIRLAI 327
>gi|407781162|ref|ZP_11128382.1| tRNA modification GTPase TrmE [Oceanibaculum indicum P24]
gi|407208588|gb|EKE78506.1| tRNA modification GTPase TrmE [Oceanibaculum indicum P24]
Length = 445
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 132/338 (39%), Positives = 181/338 (53%), Gaps = 64/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ GV+V+R+SGP L+ + D ++ R LR++ DP + VLD L LWFP
Sbjct: 14 QGRSGVAVVRLSGPSAGAVLQKIT---DGRLPPGRKVVLRSVRDPETGQVLDSALILWFP 70
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGED E +HG AVI A++ L++ PGLR AEPGEF++RAF K+DLT E
Sbjct: 71 APASFTGEDVAELHLHGGRAVIAAVMQVLSRQPGLRLAEPGEFTRRAFLAGKMDLTSVEG 130
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR
Sbjct: 131 LADLIDAETEAQR----------------------------------------------- 143
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
R + Q+ G++ E G R R + LA EA IDF ++++ E+ + +
Sbjct: 144 --RQALRQMGGALSALYE-----GWRARL----LRVLAHAEAIIDFPDEDLPEETNAH-L 191
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
R++V L I+ H+ S + G R+R GI+ I+G N GKSSL+N+L + +IV++
Sbjct: 192 RAEVTALLEEIDAHLADSRR-GERLREGIRVAIIGPANAGKSSLLNWLAGRDAAIVSATA 250
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE HLD+GGYPV+L DTAGLR T+D +E EG
Sbjct: 251 GTTRDVIEVHLDLGGYPVLLADTAGLR-ETADALEEEG 287
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 129/286 (45%), Gaps = 66/286 (23%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TIFAL++ G+ GV+V+R+SGP L+ + D ++P R LR++ DP + VL
Sbjct: 5 GTIFALATPQGRSGVAVVRLSGPSAGAVLQKIT---DGRLPPGRKVVLRSVRDPETGQVL 61
Query: 88 DEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVV 147
D L LWFP + A + + V++ R ++ V + V
Sbjct: 62 DSALILWFP----------------------APASFTGEDVAELHLHGGRAVIAAVMQ-V 98
Query: 148 LDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFN 207
L L +P FT +RAF
Sbjct: 99 LSRQPGLRLAEPGEFT--------------------------------------RRAFLA 120
Query: 208 NKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSE 267
K+DLT E L DLI AETE QR++AL QM G L LY WR +L LA EA IDF +
Sbjct: 121 GKMDLTSVEGLADLIDAETEAQRRQALRQMGGALSALYEGWRARLLRVLAHAEAIIDFPD 180
Query: 268 DEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
+++ E+ + +R++V L I+ H+ S + G R+R GI+ I
Sbjct: 181 EDLPEETNAH-LRAEVTALLEEIDAHLADSRR-GERLREGIRVAII 224
>gi|296486094|tpg|DAA28207.1| TPA: GTP binding protein 3 (mitochondrial) [Bos taurus]
Length = 470
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 134/338 (39%), Positives = 183/338 (54%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CG++VIR SGP + +AL+S+ D ++ R A LR + DP S LD L LWFP
Sbjct: 43 QGRCGIAVIRTSGPASGHALQSLTAPRDLPLA--RKACLRLLSDPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF + KL LT+ E
Sbjct: 101 GPQSFTGEDCAEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLSLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDFSED+ +E+ +L+
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGDLCRGWAETLTKALAHVEAYIDFSEDDNLEEGVLD 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
S+V +L ++ H+ + + G R+RSG V+ N
Sbjct: 221 QADSEVRKLEVALGVHLRDARR-GQRLRSGAHVVVA------------------GPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K S++ EP
Sbjct: 262 KSSLVNL---------LSRK--------PVSIVSPEP----------------------- 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+P +L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPALLSDTAGLREGVGP-VEQEG 318
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+S+ D +P R A LR + DP S LD
Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALQSLTAPRD--LPLARKACLRLLSDPRSGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|353328762|ref|ZP_08971089.1| tRNA modification GTPase TrmE, partial [Wolbachia endosymbiont
wVitB of Nasonia vitripennis]
Length = 325
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 136/338 (40%), Positives = 191/338 (56%), Gaps = 68/338 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V+R+SG ALK++ + +K KPR+A+L ++ D S+++ D G+ ++FP
Sbjct: 16 GKSGVAVVRISGN---YALKALNHFHIKKEIKPRFATLVDLYDDSSQLI-DNGIIIYFPA 71
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q+HGS AVI IL L+K+ + A PGEFS RAF N K DLTQ E +
Sbjct: 72 PNSFTGEDVIELQMHGSKAVIKIILEELSKIFVM--ARPGEFSLRAFLNGKFDLTQIEGI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET++ Q K +KQ+ E LE L S
Sbjct: 130 ADLIDAETKM-------QAKQAIKQISGE-----LERLYS-------------------- 157
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLAS-VEAYIDFSEDEIIEDNILNTV 337
S + +I + S +EAYIDF ED + E N L +
Sbjct: 158 ---------------------------SWKQKLITIQSKIEAYIDFPEDILAEKNELEKI 190
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
++V L SI++H+ N+ G R+R G+ VI G+PNVGKS+L NFL ++ I+I++
Sbjct: 191 NNEVKTLVQSIQEHLN-DNRRGERLREGLHVVITGKPNVGKSTLFNFLAKRDIAIISEYA 249
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRD++E H+D+ GYPVIL DTAG+ +SD +E+EG
Sbjct: 250 GTTRDILEAHIDVAGYPVILSDTAGIH-ESSDPVESEG 286
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 47/68 (69%), Gaps = 4/68 (5%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALS+ GK GV+V+R+SG ALK++ + +K KPR+A+L ++ D S+++ D
Sbjct: 7 TIFALSTVFGKSGVAVVRISGN---YALKALNHFHIKKEIKPRFATLVDLYDDSSQLI-D 62
Query: 89 EGLCLWFP 96
G+ ++FP
Sbjct: 63 NGIIIYFP 70
>gi|73986022|ref|XP_541954.2| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial isoform 1
[Canis lupus familiaris]
Length = 492
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 133/337 (39%), Positives = 179/337 (53%), Gaps = 62/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+CG++VIR SGP + +AL+S+ D + R A LR + P S LD L LWFP
Sbjct: 44 GRCGIAVIRTSGPASGHALRSLTASRD--LPPARSACLRLLSHPHSREPLDRALVLWFPG 101
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF + KL LT+ E L
Sbjct: 102 PQSFTGEDCAEFHVHGGSAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLSLTEVEGL 161
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 162 ADLIHAETEAQRRQALRQLDGELGHLCHGWAKTLTKALAHVEAYIDFGEDDNLEEGVLER 221
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
SQV +L ++ H+ + + G R+RSG I+ N +
Sbjct: 222 ANSQVRELELALSAHLRDARR-GQRLRSGA------------------HIVVTGPPNAGK 262
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S +V L LS K S++ EP G
Sbjct: 263 SSLVNL---------LSRK--------PVSIVSPEP-----------------------G 282
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDV+E +D+ G+P +L DTAGLR +E EG
Sbjct: 283 TTRDVLETPVDLAGFPALLSDTAGLREGAGP-VEQEG 318
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+S+ D +P R A LR + P S+ LD
Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRSLTASRD--LPPARSACLRLLSHPHSREPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|338741362|ref|YP_004678324.1| tRNA modification GTPase trmE [Hyphomicrobium sp. MC1]
gi|337761925|emb|CCB67760.1| tRNA modification GTPase trmE [Hyphomicrobium sp. MC1]
Length = 450
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 129/337 (38%), Positives = 173/337 (51%), Gaps = 64/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G++VIR+SGP L+ M + KPR A+ R I P + LD + LWF
Sbjct: 21 GRAGIAVIRISGPAAQGVLQRMVA----PIPKPRVAAFRTIRHPETGEALDRAVVLWFAA 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P S TGED EFQVHGS AV+ A+L AL +P R AEPGEF++RAF N KLDL + E L
Sbjct: 77 PLSETGEDVVEFQVHGSRAVVAALLSALATMPDCRLAEPGEFARRAFENGKLDLAEVEGL 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL+ AET+ QR++AL Q G L +LY WR ++E A EA IDFS++ + +
Sbjct: 137 ADLVDAETDAQRRQALAQAGGALSKLYDGWRARLIEIAALTEAAIDFSDEGDVSASSFAE 196
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R + L I H++ D EI+ D
Sbjct: 197 ARKRAEILAKEIAAHLD--------------------------DGHRGEILRD------- 223
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
G R+ ++G PN GKSSL+N L ++ +IV++ G
Sbjct: 224 --------------------GFRV------ALLGAPNAGKSSLLNALARRDAAIVSAEAG 257
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE LD+GG PVI+ DTAG+R S+ +E EG
Sbjct: 258 TTRDVIEVRLDLGGLPVIVSDTAGIREAASE-VEQEG 293
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 9/109 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TIFALSS G+ G++VIR+SGP L+ M +PKPR A+ R I P + L
Sbjct: 11 TTIFALSSAPGRAGIAVIRISGPAAQGVLQRMVA----PIPKPRVAAFRTIRHPETGEAL 66
Query: 88 DEGLCLWFPRH-GKCGVSVI--RVSGPDTLNA--LKSMACYPDQKVSKP 131
D + LWF + G V+ +V G + A L ++A PD ++++P
Sbjct: 67 DRAVVLWFAAPLSETGEDVVEFQVHGSRAVVAALLSALATMPDCRLAEP 115
>gi|296233234|ref|XP_002761924.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial isoform 1
[Callithrix jacchus]
Length = 492
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 134/338 (39%), Positives = 181/338 (53%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CGV+VIR SGP + +AL+ + D + R+ASLR + DP S LD L LWFP
Sbjct: 43 QGRCGVAVIRTSGPASGHALRILTAPRD--LPPARHASLRLLSDPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF + KL+LT+ E
Sbjct: 101 GPKSFTGEDCVEFHVHGGPAVVSGVLRALGSVPGLRPAEAGEFTRRAFAHGKLNLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+V L ++ H+ + + G R+RSG V+ N
Sbjct: 221 QANIEVRALEVALGAHLRDARR-GQRLRSGAHVVVT------------------GPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K S++ EP
Sbjct: 262 KSSLVNL---------LSRK--------PVSIVSPEP----------------------- 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 318
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CGV+VIR SGP + +AL+ + D +P R+ASLR + DP S LD
Sbjct: 35 TIFALSSGQGRCGVAVIRTSGPASGHALRILTAPRD--LPPARHASLRLLSDPRSGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|353328329|ref|ZP_08970656.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont wVitB of
Nasonia vitripennis]
Length = 442
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 136/338 (40%), Positives = 191/338 (56%), Gaps = 68/338 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V+R+SG ALK++ + +K KPR+A+L ++ D S+++ D G+ ++FP
Sbjct: 16 GKSGVAVVRISGN---YALKALNHFHIKKEIKPRFATLVDLYDDSSQLI-DNGIIIYFPA 71
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q+HGS AVI IL L+K+ + A PGEFS RAF N K DLTQ E +
Sbjct: 72 PNSFTGEDVIELQMHGSKAVIKIILEELSKIFVM--ARPGEFSLRAFLNGKFDLTQIEGI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET++ Q K +KQ+ E LE L S
Sbjct: 130 ADLIDAETKM-------QAKQAIKQISGE-----LERLYS-------------------- 157
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLAS-VEAYIDFSEDEIIEDNILNTV 337
S + +I + S +EAYIDF ED + E N L +
Sbjct: 158 ---------------------------SWKQKLITIQSKIEAYIDFPEDILAEKNELEKI 190
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
++V L SI++H+ N+ G R+R G+ VI G+PNVGKS+L NFL ++ I+I++
Sbjct: 191 NNEVKTLVQSIQEHLN-DNRRGERLREGLHVVITGKPNVGKSTLFNFLAKRDIAIISEYA 249
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRD++E H+D+ GYPVIL DTAG+ +SD +E+EG
Sbjct: 250 GTTRDILEAHIDVAGYPVILSDTAGIH-ESSDPVESEG 286
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 132/285 (46%), Gaps = 68/285 (23%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALS+ GK GV+V+R+SG ALK++ + +K KPR+A+L ++ D S+++ D
Sbjct: 7 TIFALSTVFGKSGVAVVRISGN---YALKALNHFHIKKEIKPRFATLVDLYDDSSQLI-D 62
Query: 89 EGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVL 148
G+ ++FP +G D + + + + V ++ I++ +S++ +
Sbjct: 63 NGIIIYFPAPNSF-------TGEDVI----ELQMHGSKAV-------IKIILEELSKIFV 104
Query: 149 DEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNN 208
+P F+ A +N LT++ G+ E
Sbjct: 105 -------MARPGEFSLR-----------AFLNGKFD-LTQIEGIADLIDAE--------- 136
Query: 209 KLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSED 268
T+ +A + Q EL+R LYS W+Q ++ + +EAYIDF ED
Sbjct: 137 ----TKMQAKQAIKQISGELER-------------LYSSWKQKLITIQSKIEAYIDFPED 179
Query: 269 EIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
+ E N L + ++V L SI++H+ N+ G R+R G+ VI
Sbjct: 180 ILAEKNELEKINNEVKTLVQSIQEHLN-DNRRGERLREGLHVVIT 223
>gi|384261486|ref|YP_005416672.1| tRNA modification GTPase mnmE [Rhodospirillum photometricum DSM
122]
gi|378402586|emb|CCG07702.1| tRNA modification GTPase mnmE [Rhodospirillum photometricum DSM
122]
Length = 519
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 127/338 (37%), Positives = 182/338 (53%), Gaps = 65/338 (19%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
HG+ G++V+RVSGP L ++ + PR A+ + PVS+ LD+ L LWFP
Sbjct: 95 HGRAGIAVVRVSGPGAGPVLDALT----GRRPVPRRATRARLCHPVSKEWLDDALILWFP 150
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGED E +HG AV+ A+ ++ ++PG+R AEPGEFS+RAF N+K+DLT EA
Sbjct: 151 GPASFTGEDLAELHIHGGRAVLEAVTQSVAEIPGVRLAEPGEFSRRAFLNDKMDLTTAEA 210
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DL+ AETE QR
Sbjct: 211 LADLVNAETEAQR----------------------------------------------- 223
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
R + Q G++ + E +R+ LA EA +DF DE + + V
Sbjct: 224 --RQALRQADGALFRLYEGWRGEAMRL---------LAHAEALLDFP-DEDLPPAVEAEV 271
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
R+ +V L ++ H++ ++ G R+R G+ ++G PN GKSSL+N L +++ +IV+ I
Sbjct: 272 RAGIVHLRDTLAAHLDDRHR-GERLRDGLHVAVIGAPNAGKSSLVNRLARREAAIVSDIA 330
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE LD+GGYP++L DTAG+R TT D+IE EG
Sbjct: 331 GTTRDVIEVGLDLGGYPLLLADTAGVRETT-DVIEAEG 367
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/303 (30%), Positives = 140/303 (46%), Gaps = 69/303 (22%)
Query: 10 KEKAVIFFSRRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPK 69
K +A +FF I TIFAL++ HG+ G++V+RVSGP L ++ + P
Sbjct: 70 KGRATLFFV--GDLRPIMATIFALATAHGRAGIAVVRVSGPGAGPVLDALT----GRRPV 123
Query: 70 PRYASLRNIVDPVSKVVLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVS 129
PR A+ + PVSK LD+ L LWFP GP A + + ++
Sbjct: 124 PRRATRARLCHPVSKEWLDDALILWFP-------------GP---------ASFTGEDLA 161
Query: 130 KPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL 189
+ R +++ V++ V + I G
Sbjct: 162 ELHIHGGRAVLEAVTQSVAE--------------------------------IPGVRLAE 189
Query: 190 PGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWR 249
PG EFS+RAF N+K+DLT EAL DL+ AETE QR++AL Q G L +LY WR
Sbjct: 190 PG-------EFSRRAFLNDKMDLTTAEALADLVNAETEAQRRQALRQADGALFRLYEGWR 242
Query: 250 QLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK 309
+ LA EA +DF DE + + VR+ +V L ++ H++ ++ G R+R G+
Sbjct: 243 GEAMRLLAHAEALLDFP-DEDLPPAVEAEVRAGIVHLRDTLAAHLDDRHR-GERLRDGLH 300
Query: 310 SVI 312
+
Sbjct: 301 VAV 303
>gi|296233236|ref|XP_002761925.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial isoform 2
[Callithrix jacchus]
Length = 471
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 134/337 (39%), Positives = 181/337 (53%), Gaps = 62/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+CGV+VIR SGP + +AL+ + D + R+ASLR + DP S LD L LWFP
Sbjct: 44 GRCGVAVIRTSGPASGHALRILTAPRD--LPPARHASLRLLSDPRSGEPLDRALVLWFPG 101
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF + KL+LT+ E L
Sbjct: 102 PKSFTGEDCVEFHVHGGPAVVSGVLRALGSVPGLRPAEAGEFTRRAFAHGKLNLTEVEGL 161
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 162 ADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLEQ 221
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+V L ++ H+ + + G R+RSG V+ N +
Sbjct: 222 ANIEVRALEVALGAHLRDARR-GQRLRSGAHVVVT------------------GPPNAGK 262
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S +V L LS K S++ EP G
Sbjct: 263 SSLVNL---------LSRK--------PVSIVSPEP-----------------------G 282
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 283 TTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 318
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CGV+VIR SGP + +AL+ + D +P R+ASLR + DP S LD
Sbjct: 35 TIFALSSGQGRCGVAVIRTSGPASGHALRILTAPRD--LPPARHASLRLLSDPRSGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|373450466|ref|ZP_09542456.1| tRNA modification GTPase mnmE [Wolbachia pipientis wAlbB]
gi|371932334|emb|CCE77465.1| tRNA modification GTPase mnmE [Wolbachia pipientis wAlbB]
Length = 442
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 137/337 (40%), Positives = 191/337 (56%), Gaps = 66/337 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+VIR+SG ALK++ + +K KPR+A+L ++ D S+++ D G+ ++FP
Sbjct: 16 GKSGVAVIRISGN---YALKALNHFHIKKEIKPRFATLVDLYDDSSQLI-DNGIIIYFPT 71
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E QVHGS AVI IL L+K+ + A PGEFS RAF N K DLTQ E +
Sbjct: 72 PNSFTGEDVIELQVHGSKAVIKIILEELSKIFVM--ARPGEFSLRAFLNGKFDLTQIEGI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET++ Q K +KQ+ + LE L S
Sbjct: 130 ADLIDAETKM-------QAKQAIKQISGK-----LERLYS-------------------N 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R +++ + + +EAYIDF E+ E + L +
Sbjct: 159 WRQRLITIQ---------------------------SKIEAYIDFPENIWAEKSELEKIN 191
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++V L I++H+ N+ G R+R G+ VI GEPNVGKS+L NFL ++ I+IV+ G
Sbjct: 192 NKVQSLVQLIQEHLN-DNRRGERLREGLHIVITGEPNVGKSTLFNFLAKRDIAIVSEYAG 250
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD++E H+DIGGYP+IL DTAG+R +SD IE+EG
Sbjct: 251 TTRDILEAHIDIGGYPIILSDTAGIR-ESSDPIESEG 286
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 47/68 (69%), Gaps = 4/68 (5%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALS+ GK GV+VIR+SG ALK++ + +K KPR+A+L ++ D S+++ D
Sbjct: 7 TIFALSTVFGKSGVAVIRISGN---YALKALNHFHIKKEIKPRFATLVDLYDDSSQLI-D 62
Query: 89 EGLCLWFP 96
G+ ++FP
Sbjct: 63 NGIIIYFP 70
>gi|269958310|ref|YP_003328097.1| tRNA modification GTPase TrmE [Anaplasma centrale str. Israel]
gi|269848139|gb|ACZ48783.1| tRNA modification GTPase TrmE [Anaplasma centrale str. Israel]
Length = 443
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 129/343 (37%), Positives = 192/343 (55%), Gaps = 68/343 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+VIR+SG NALKSM ++ +PR A+ + + D + + D+ + L+FP
Sbjct: 15 GKSGVAVIRISGH---NALKSMQLLGVKEPVRPRVATCKTLYDKKRQPI-DQAVVLYFPG 70
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E QVHGS+AVI + L + R AEPGEFS RAF N K+DLT+ E +
Sbjct: 71 PGSFTGEDVVELQVHGSLAVIRLLFEELQTV--FRIAEPGEFSLRAFLNGKIDLTRAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL+ +ETE Q L+Q +++ + + +
Sbjct: 129 ADLVNSETEAQ-----------LRQAFAQSSGFL--------------------ERLYEE 157
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS +V + L+ +EAYIDF +D + IL +V
Sbjct: 158 WRSSLVDI---------------------------LSDLEAYIDFPDD--VSPQILRSVH 188
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+V +LH S+E+H++ ++ G R+R G++ I+G+PNVGKS+L N L ++ ++IV+ PG
Sbjct: 189 DRVKELHNSLERHLDDGHR-GERLRHGMRVAILGKPNVGKSTLFNHLARRDMAIVSEYPG 247
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKN 441
TTRDV+E H+DIGGYP I++DTAG+R +T D +E EG + K+
Sbjct: 248 TTRDVLEAHVDIGGYPFIIVDTAGIREST-DFVEREGIMRAKS 289
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 69/129 (53%), Gaps = 7/129 (5%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFALS+ GK GV+VIR+SG NALKSM ++ +PR A+ + + D + +
Sbjct: 5 DTIFALSTPMGKSGVAVIRISGH---NALKSMQLLGVKEPVRPRVATCKTLYDK-KRQPI 60
Query: 88 DEGLCLWFPRHGK-CGVSVIRVSGPDTLNALKSM--ACYPDQKVSKPRYASLRNIVDPVS 144
D+ + L+FP G G V+ + +L ++ + ++++P SLR ++
Sbjct: 61 DQAVVLYFPGPGSFTGEDVVELQVHGSLAVIRLLFEELQTVFRIAEPGEFSLRAFLNGKI 120
Query: 145 EVVLDEGLC 153
++ EG+
Sbjct: 121 DLTRAEGIA 129
>gi|254567177|ref|XP_002490699.1| Mitochondrial protein, forms a heterodimer complex with Mto1p
[Komagataella pastoris GS115]
gi|238030495|emb|CAY68419.1| Mitochondrial protein, forms a heterodimer complex with Mto1p
[Komagataella pastoris GS115]
gi|328351084|emb|CCA37484.1| tRNA modification GTPase mnmE [Komagataella pastoris CBS 7435]
Length = 503
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 130/345 (37%), Positives = 185/345 (53%), Gaps = 63/345 (18%)
Query: 97 RHGKCGVSVIRVSGPDTLNALKSMACYPDQK-VSKPRYASLRNIVDPVSEVVLDEGLCLW 155
+ G+ ++VIR+SGP TL+ K ++ D K + + R AS+R + DP S V+LDE L L+
Sbjct: 33 KQGRSAIAVIRISGPSTLDVFKRLSRIDDDKRLQRHRLASVRKLYDPKSGVLLDEALSLF 92
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL----PGLRPAEPGEFSKRAFFNNKLD 211
F PNS+TGED E VHG AV+ +L A+ L +R A+PGEFS+R F N K D
Sbjct: 93 FKGPNSYTGEDVLELHVHGGNAVVKCVLNAIKYLHESAAPIRYADPGEFSRRGFQNGKFD 152
Query: 212 LTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEII 271
LT+ E + D+I AETE QR AL +KG + L+ WR I++++A + IDF ED I
Sbjct: 153 LTEVEGVRDMIDAETEFQRVSALTSLKGETRHLFHRWRTEIVKNVALLTTVIDFGEDHDI 212
Query: 272 EDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIED 331
E +V +L G + K+I+L
Sbjct: 213 E---------EVNELFGRVAKNIDL----------------------------------- 228
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
L I+ ++E + + ++ GIK ++G PN GKSSL+N L
Sbjct: 229 ------------LEAEIKNYLEKVKRSEILMK-GIKLSLIGPPNAGKSSLLNVLSDSDSV 275
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT-TTSDIIETEG 435
IV+ IPGTTRD I+ LD+GGY V++ DTAG+R+ +DIIE EG
Sbjct: 276 IVSDIPGTTRDSIDIPLDVGGYKVVIGDTAGIRSFEDADIIEKEG 320
>gi|340713567|ref|XP_003395313.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
[Bombus terrestris]
Length = 478
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 136/340 (40%), Positives = 184/340 (54%), Gaps = 67/340 (19%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVS--KPRYASLRNIVDPVSEVVLDEGLCLW 155
+GKCGV+VIRVSGP L AL+ M K+S KPR A LR I DP ++ VLD+GLCLW
Sbjct: 31 YGKCGVAVIRVSGPKALVALEKMT-----KISSLKPRTAFLRKIHDPQTKEVLDKGLCLW 85
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
FP P SFTGEDC EF VHG AV+ +IL AL+KL A PGEF++RAF N K+DLT+
Sbjct: 86 FPGPKSFTGEDCAEFHVHGGPAVVTSILNALSKLR-FHLAPPGEFTRRAFLNGKIDLTEA 144
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
E +GDLI+AETE QRQ+A +Q G+L++LY WR +L LA++EAY+DFSE+ + N+
Sbjct: 145 EGIGDLIEAETEKQRQQASNQASGSLRRLYDSWRITLLNVLANLEAYVDFSEEHSVTSNV 204
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILN 335
L + V L I++H+ K G +R+G+ I E + + ++LN
Sbjct: 205 LEDANAVVQTLSTEIQQHLSDGRK-GEILRTGVHVAI----------LGEPNVGKSSLLN 253
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
LS K +++ P + I + T+
Sbjct: 254 L-----------------LSRKDA--------AIVTSSPGTTRDV---------IELTTN 279
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I G YP+IL DTAG+R + IE EG
Sbjct: 280 ICG--------------YPMILADTAGIRNNPENKIEVEG 305
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 50/69 (72%), Gaps = 3/69 (4%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI+ALSSG+GKCGV+VIRVSGP L AL+ M KPR A LR I DP +K VL
Sbjct: 22 STIYALSSGYGKCGVAVIRVSGPKALVALEKMTKISSL---KPRTAFLRKIHDPQTKEVL 78
Query: 88 DEGLCLWFP 96
D+GLCLWFP
Sbjct: 79 DKGLCLWFP 87
>gi|403303399|ref|XP_003942314.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial [Saimiri
boliviensis boliviensis]
Length = 492
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 134/338 (39%), Positives = 181/338 (53%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CGV+VIR SGP + +AL+ + D + R+ASLR + DP S LD L LWFP
Sbjct: 43 QGRCGVAVIRTSGPASGHALRILTAPRD--LPPARHASLRLLSDPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF + KL+LT+ E
Sbjct: 101 GPKSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLNLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+V L ++ H+ + + G R+RSG V+ N
Sbjct: 221 QAGIEVRALEVALGAHLRDARR-GQRLRSGAHVVVT------------------GPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K S++ EP
Sbjct: 262 KSSLVNL---------LSRK--------PVSIVSPEP----------------------- 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 318
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CGV+VIR SGP + +AL+ + D +P R+ASLR + DP S LD
Sbjct: 35 TIFALSSGQGRCGVAVIRTSGPASGHALRILTAPRD--LPPARHASLRLLSDPRSGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|380011403|ref|XP_003689796.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
[Apis florea]
Length = 496
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 151/217 (69%), Gaps = 9/217 (4%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVS--KPRYASLRNIVDPVSEVVLDEGLCLW 155
+GKCGV+VIR+SGP L ALK M K+S KPR A L+ I DP ++ +LD+GLCLW
Sbjct: 49 YGKCGVAVIRISGPKALVALKRMT-----KISELKPRMALLKKIYDPETKEMLDKGLCLW 103
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
FP PNSFTGEDC EF VHG +AVI +IL AL KL + A PGEF++RAF N KLDLT+
Sbjct: 104 FPGPNSFTGEDCIEFHVHGGLAVITSILNALAKL-HFQLALPGEFTRRAFLNGKLDLTEA 162
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
E +GDLI+AETE QR++A +Q+ G+L +Y WR ++L LA++EAYIDF+E+ + NI
Sbjct: 163 EGIGDLIEAETEKQRKQASNQIIGSLYHIYESWRTILLNILANLEAYIDFAEEHDVTSNI 222
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
L + + +L+ I++H+ K G +R+GI I
Sbjct: 223 LEDTKINIQKLYVKIQQHLSDERK-GEILRNGIHVTI 258
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 86/122 (70%), Gaps = 1/122 (0%)
Query: 314 LASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGE 373
LA++EAYIDF+E+ + NIL + + +L+ I++H+ K G +R+GI I+G+
Sbjct: 203 LANLEAYIDFAEEHDVTSNILEDTKINIQKLYVKIQQHLSDERK-GEILRNGIHVTILGK 261
Query: 374 PNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIET 433
PNVGKSSL+N L +K +IVTS+PGTTRD+IE +DI GYP+IL DTAG+R + IE
Sbjct: 262 PNVGKSSLLNLLSKKNAAIVTSLPGTTRDIIELTIDICGYPMILADTAGIRNDPENEIEI 321
Query: 434 EG 435
EG
Sbjct: 322 EG 323
>gi|395847883|ref|XP_003796593.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial isoform 2
[Otolemur garnettii]
Length = 471
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 135/338 (39%), Positives = 181/338 (53%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CG++VIR SGP + AL + D + R ASLR + DP S LD L LWFP
Sbjct: 43 QGRCGIAVIRTSGPASGYALGILTAPRD--LPPARKASLRLLSDPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF + KL+LT+ E
Sbjct: 101 GPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLNLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
V S+V L +++ H+ + + G R+RSG V+ N
Sbjct: 221 QVDSEVRALEVALQTHLGDARR-GQRLRSGAHVVVT------------------GPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K S++ EP
Sbjct: 262 KSSLVNL---------LSRK--------PVSIVSPEP----------------------- 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPVLLSDTAGLREGIGP-VEQEG 318
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 6 KKAAKEKAVIFFSR-RCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPD 64
+ A + + F R R L TIFALSSG G+CG++VIR SGP + AL + D
Sbjct: 11 RAACGPRRLCTFQRSRVPALNSGTTIFALSSGQGRCGIAVIRTSGPASGYALGILTAPRD 70
Query: 65 QKVPKPRYASLRNIVDPVSKVVLDEGLCLWFP 96
+P R ASLR + DP S LD L LWFP
Sbjct: 71 --LPPARKASLRLLSDPRSGEPLDRALVLWFP 100
>gi|51473927|ref|YP_067684.1| tRNA modification GTPase TrmE [Rickettsia typhi str. Wilmington]
gi|383752704|ref|YP_005427804.1| tRNA modification GTPase TrmE [Rickettsia typhi str. TH1527]
gi|383843539|ref|YP_005424042.1| tRNA modification GTPase TrmE [Rickettsia typhi str. B9991CWPP]
gi|81389958|sp|Q68VZ0.1|MNME_RICTY RecName: Full=tRNA modification GTPase MnmE
gi|51460239|gb|AAU04202.1| thiophene and furan oxidation protein; tRNA modification GTPase
[Rickettsia typhi str. Wilmington]
gi|380759347|gb|AFE54582.1| tRNA modification GTPase TrmE [Rickettsia typhi str. TH1527]
gi|380760186|gb|AFE55420.1| tRNA modification GTPase TrmE [Rickettsia typhi str. B9991CWPP]
Length = 445
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 131/337 (38%), Positives = 179/337 (53%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGP +L L+ + D KPR + I+ P + ++D + ++F
Sbjct: 12 GKAGVAVFRISGPKSLEVLQLLTGRKD---FKPRLMYYQQIISPETNELIDNAMVVYFKL 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E HGS A+ ++ L + +R AE GEF+KRAF NNK DLT E +
Sbjct: 69 PNSFTGEDVVEIHTHGSKAISIMLINTLLNIDDIRLAEAGEFTKRAFLNNKFDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q
Sbjct: 129 ADLINAETIMQH------------------------------------------------ 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R V Q +G +E EL N R+ + +I L +EAY+DF DE I D+ILN V
Sbjct: 141 -RQAVRQANGGLE---ELYNNW----RNQLLKIIAL--LEAYLDFP-DEDIPDSILNDVN 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + I ++ N+ G + +G+K I+G PN GKSSL+NFL Q+ I+IV++I G
Sbjct: 190 NTHKNIVNEISNYLN-DNRRGELLNNGLKLAIIGPPNTGKSSLLNFLMQRNIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+R ++DIIE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIRAESTDIIEREG 285
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + D KPR + I+ P + ++D
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKPRLMYYQQIISPETNELID 59
Query: 89 EGLCLWF 95
+ ++F
Sbjct: 60 NAMVVYF 66
>gi|222475664|ref|YP_002564081.1| tRNA modification GTPase TrmE [Anaplasma marginale str. Florida]
gi|255003656|ref|ZP_05278620.1| tRNA modification GTPase TrmE [Anaplasma marginale str. Puerto
Rico]
gi|222419802|gb|ACM49825.1| thiophene and furan oxidation protein (thdF) [Anaplasma marginale
str. Florida]
Length = 443
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 129/343 (37%), Positives = 192/343 (55%), Gaps = 68/343 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+VIR+SG NALKSM ++ +PR A+ + + D + + D+ + L+FP
Sbjct: 15 GKSGVAVIRISGH---NALKSMQLLGVKEPVRPRVATCKTLYDKKRQPI-DQAVVLYFPG 70
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E QVHGS+AVI + L + R AEPGEFS RAF N K+DLT+ E +
Sbjct: 71 PGSFTGEDVVELQVHGSLAVIRLLFEELQTV--FRIAEPGEFSLRAFLNGKIDLTRAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL+ +ETE Q L+Q +++ + + +
Sbjct: 129 ADLVNSETEAQ-----------LRQAFAQSSGFL--------------------ERLYEE 157
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS +V + L+ +EAYIDF +D + IL +V
Sbjct: 158 WRSSLVDI---------------------------LSDLEAYIDFPDD--VSPQILRSVH 188
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+V +LH S+E+H++ ++ G R+R G++ I+G+PNVGKS+L N L ++ ++IV+ PG
Sbjct: 189 DRVKELHNSLERHLDDGHR-GERLRHGMRVAILGKPNVGKSTLFNHLARRDMAIVSEYPG 247
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKN 441
TTRDV+E H+DIGGYP I++DTAG+R +T D +E EG + K+
Sbjct: 248 TTRDVLEAHVDIGGYPFIVVDTAGIREST-DFVEREGIMRAKS 289
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 69/129 (53%), Gaps = 7/129 (5%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFALS+ GK GV+VIR+SG NALKSM ++ +PR A+ + + D + +
Sbjct: 5 DTIFALSTPMGKSGVAVIRISGH---NALKSMQLLGVKEPVRPRVATCKTLYDK-KRQPI 60
Query: 88 DEGLCLWFPRHGK-CGVSVIRVSGPDTLNALKSM--ACYPDQKVSKPRYASLRNIVDPVS 144
D+ + L+FP G G V+ + +L ++ + ++++P SLR ++
Sbjct: 61 DQAVVLYFPGPGSFTGEDVVELQVHGSLAVIRLLFEELQTVFRIAEPGEFSLRAFLNGKI 120
Query: 145 EVVLDEGLC 153
++ EG+
Sbjct: 121 DLTRAEGIA 129
>gi|350409347|ref|XP_003488703.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
[Bombus impatiens]
Length = 478
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 137/340 (40%), Positives = 184/340 (54%), Gaps = 67/340 (19%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVS--KPRYASLRNIVDPVSEVVLDEGLCLW 155
+GKCGV+VIRVSGP+ L AL+ M K+S KPR A LR I DP ++ VLD+GLCLW
Sbjct: 31 YGKCGVAVIRVSGPEALVALEKMT-----KISSLKPRTAFLRKIHDPQTKEVLDKGLCLW 85
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
FP P SFTGEDC EF VHG AV+ +IL AL+KL A PGEF+KRAF N K+DLT+
Sbjct: 86 FPGPKSFTGEDCAEFHVHGGPAVVTSILNALSKLR-FHLALPGEFTKRAFLNGKIDLTEA 144
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
E +GDLI+AETE QRQ+A +Q G+L+ LY WR +L LA++EAY+DFSE+ + N+
Sbjct: 145 EGIGDLIEAETEKQRQQASNQASGSLRCLYDSWRITLLNVLANLEAYVDFSEEHSVTSNV 204
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILN 335
L + V L+ I +H+ K G +R+G+ I E + + ++LN
Sbjct: 205 LENANTVVQTLYTEIRQHLSDGRK-GEILRTGVHVAI----------LGEPNVGKSSLLN 253
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
LS K +++ P + I + T+
Sbjct: 254 L-----------------LSRKDA--------AIVTSSPGTTRDV---------IELTTN 279
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I G YP+IL DTAG+R + IE EG
Sbjct: 280 ICG--------------YPMILADTAGIRNNPENEIEVEG 305
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 51/69 (73%), Gaps = 3/69 (4%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI+ALSSG+GKCGV+VIRVSGP+ L AL+ M KPR A LR I DP +K VL
Sbjct: 22 STIYALSSGYGKCGVAVIRVSGPEALVALEKMTKISSL---KPRTAFLRKIHDPQTKEVL 78
Query: 88 DEGLCLWFP 96
D+GLCLWFP
Sbjct: 79 DKGLCLWFP 87
>gi|395847881|ref|XP_003796592.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial isoform 1
[Otolemur garnettii]
Length = 492
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 135/338 (39%), Positives = 181/338 (53%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CG++VIR SGP + AL + D + R ASLR + DP S LD L LWFP
Sbjct: 43 QGRCGIAVIRTSGPASGYALGILTAPRD--LPPARKASLRLLSDPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF + KL+LT+ E
Sbjct: 101 GPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLNLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
V S+V L +++ H+ + + G R+RSG V+ N
Sbjct: 221 QVDSEVRALEVALQTHLGDARR-GQRLRSGAHVVVT------------------GPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K S++ EP
Sbjct: 262 KSSLVNL---------LSRK--------PVSIVSPEP----------------------- 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPVLLSDTAGLREGIGP-VEQEG 318
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 6 KKAAKEKAVIFFSR-RCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPD 64
+ A + + F R R L TIFALSSG G+CG++VIR SGP + AL + D
Sbjct: 11 RAACGPRRLCTFQRSRVPALNSGTTIFALSSGQGRCGIAVIRTSGPASGYALGILTAPRD 70
Query: 65 QKVPKPRYASLRNIVDPVSKVVLDEGLCLWFP 96
+P R ASLR + DP S LD L LWFP
Sbjct: 71 --LPPARKASLRLLSDPRSGEPLDRALVLWFP 100
>gi|15604593|ref|NP_221111.1| tRNA modification GTPase TrmE [Rickettsia prowazekii str. Madrid E]
gi|383486741|ref|YP_005404421.1| tRNA modification GTPase TrmE [Rickettsia prowazekii str. GvV257]
gi|383488155|ref|YP_005405834.1| tRNA modification GTPase TrmE [Rickettsia prowazekii str.
Chernikova]
gi|383489000|ref|YP_005406678.1| tRNA modification GTPase TrmE [Rickettsia prowazekii str.
Katsinyian]
gi|383489840|ref|YP_005407517.1| tRNA modification GTPase TrmE [Rickettsia prowazekii str. Dachau]
gi|383499979|ref|YP_005413340.1| tRNA modification GTPase TrmE [Rickettsia prowazekii str.
BuV67-CWPP]
gi|383500813|ref|YP_005414173.1| tRNA modification GTPase TrmE [Rickettsia prowazekii str. RpGvF24]
gi|386082638|ref|YP_005999217.1| tRNA modification GTPase TrmE [Rickettsia prowazekii str. Rp22]
gi|6647889|sp|Q9ZCI1.1|MNME_RICPR RecName: Full=tRNA modification GTPase MnmE
gi|3861288|emb|CAA15187.1| POSSIBLE THIOPHENE AND FURAN OXIDATION PROTEIN THDF (thdF)
[Rickettsia prowazekii str. Madrid E]
gi|292572404|gb|ADE30319.1| tRNA modification GTPase TrmE [Rickettsia prowazekii str. Rp22]
gi|380757106|gb|AFE52343.1| tRNA modification GTPase TrmE [Rickettsia prowazekii str. GvV257]
gi|380758510|gb|AFE53746.1| tRNA modification GTPase TrmE [Rickettsia prowazekii str. RpGvF24]
gi|380761034|gb|AFE49556.1| tRNA modification GTPase TrmE [Rickettsia prowazekii str.
Chernikova]
gi|380761879|gb|AFE50400.1| tRNA modification GTPase TrmE [Rickettsia prowazekii str.
Katsinyian]
gi|380762725|gb|AFE51245.1| tRNA modification GTPase TrmE [Rickettsia prowazekii str.
BuV67-CWPP]
gi|380763563|gb|AFE52082.1| tRNA modification GTPase TrmE [Rickettsia prowazekii str. Dachau]
Length = 445
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 132/337 (39%), Positives = 181/337 (53%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGP +L L+ + D KPR + I+ P + ++D + ++F
Sbjct: 12 GKAGVAVFRISGPKSLEVLQLLTGRKD---FKPRLMYYQQIIVPETNELIDNAMVVYFKL 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E HGS A+ ++ L + +R AE GEF+KRAF NNK DLT E +
Sbjct: 69 PNSFTGEDVVEIHTHGSKAISIMLINTLLNIADIRLAEAGEFTKRAFLNNKFDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q
Sbjct: 129 ADLINAETIMQH------------------------------------------------ 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R V Q +G ++ EL NK R+ + +I L +EAYIDF DE I ++ILN V
Sbjct: 141 -RQAVRQANGGLK---ELYNKW----RNQLLKIISL--LEAYIDFP-DEDIPESILNDVN 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + I ++ N+ G + +G+K I+G PN GKSSL+NFL Q+ I+IV++I G
Sbjct: 190 NTHKNIVNEISNYLN-DNRRGELLNNGLKLAIIGPPNTGKSSLLNFLMQRNIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+RT ++DIIE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIRTESTDIIEQEG 285
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + D KPR + I+ P + ++D
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKPRLMYYQQIIVPETNELID 59
Query: 89 EGLCLWF 95
+ ++F
Sbjct: 60 NAMVVYF 66
>gi|427798963|gb|JAA64933.1| Putative mitochondrial gtpase, partial [Rhipicephalus pulchellus]
Length = 431
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 135/339 (39%), Positives = 185/339 (54%), Gaps = 65/339 (19%)
Query: 100 KCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKP 159
+ ++ IRVSGP T L+ +A + PR A LR +V P S + LD + LWFP P
Sbjct: 41 RSAIATIRVSGPHTAAVLRRVA---KLEQPTPRKALLRKLVHPCSGIHLDTAIVLWFPSP 97
Query: 160 NSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALG 219
+S+TGEDCCE VHG I V++A+LGAL+ + G+R AEPGEF+KRAF N K+D
Sbjct: 98 SSYTGEDCCELHVHGGIGVVSAVLGALSHVDGVRQAEPGEFTKRAFMNGKMD-------- 149
Query: 220 DLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTV 279
LA VE D + E +
Sbjct: 150 ------------------------------------LAEVEGLSDLLKAETEAQRV---- 169
Query: 280 RSQVVQLHGSIEK-HIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+ Q+ GS+ + + +N +CLA+VEA+IDFSED+ IE+ IL++
Sbjct: 170 -QALAQMEGSLSALYRQWTNDLK----------MCLANVEAFIDFSEDQGIEETILDSAA 218
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+Q +L +I+ H+ L + G R+R G+K IVG NVGKSSL N LCQ+ +IV+ I G
Sbjct: 219 AQAERLATAIQIHL-LDGRRGERLRGGVKVAIVGRTNVGKSSLFNALCQRDAAIVSPIAG 277
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNL 437
TTRDV+E LDIGGYP + DTAGLR + D++E EG L
Sbjct: 278 TTRDVVESTLDIGGYPAVFSDTAGLR-HSDDLVEREGIL 315
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 46/80 (57%), Gaps = 7/80 (8%)
Query: 17 FSRRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLR 76
F RR S +TIFAL+SG + ++ IRVSGP T L+ +A + P PR A LR
Sbjct: 23 FLRRSS----TSTIFALASGSVRSAIATIRVSGPHTAAVLRRVA---KLEQPTPRKALLR 75
Query: 77 NIVDPVSKVVLDEGLCLWFP 96
+V P S + LD + LWFP
Sbjct: 76 KLVHPCSGIHLDTAIVLWFP 95
>gi|417858371|ref|ZP_12503428.1| tRNA modification GTPase TrmE [Agrobacterium tumefaciens F2]
gi|338824375|gb|EGP58342.1| tRNA modification GTPase TrmE [Agrobacterium tumefaciens F2]
Length = 442
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 128/335 (38%), Positives = 179/335 (53%), Gaps = 64/335 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV++IR+SGP AL + +++ PR +L +I D +E++ D+ L + FP PN
Sbjct: 18 AGVAIIRISGPLAFEALLKLTG---RELPAPRQVALGSIRDRNNEII-DQALTVIFPAPN 73
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGE+C E HGS AV+ +I L LPGLRPA+ GEFS+RAF N K+DL + E L D
Sbjct: 74 SFTGENCVEIHSHGSRAVMASIFTELDNLPGLRPADAGEFSRRAFENGKMDLLEVEGLAD 133
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
L+QAETE+QR+ A+ Q G L LY W + + A +EA +DF+++E + D++ + V
Sbjct: 134 LLQAETEMQRRLAVEQSSGKLSALYDGWANRLTRARALIEAELDFADEEDVPDSVASQVW 193
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
V QL I H +RSG S EII D
Sbjct: 194 DSVSQLRDEITGH----------LRSGGSS----------------EIIRD--------- 218
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
G K +VGEPN GKS+L+N L + ++IVT I GTT
Sbjct: 219 ------------------------GFKVALVGEPNAGKSTLLNALSGRDVAIVTDIAGTT 254
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
RDV+ +++ GY V + DTAG+R T D++E EG
Sbjct: 255 RDVLSVDINLDGYLVRIFDTAGIR-DTQDVVEQEG 288
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 25 AIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSK 84
A +TI+ALSSG GV++IR+SGP AL + +++P PR +L +I D ++
Sbjct: 3 ASTDTIYALSSGALPAGVAIIRISGPLAFEALLKLTG---RELPAPRQVALGSIRDRNNE 59
Query: 85 VVLDEGLCLWFP 96
++ D+ L + FP
Sbjct: 60 II-DQALTVIFP 70
>gi|395513373|ref|XP_003760900.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial
[Sarcophilus harrisii]
Length = 395
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 112/214 (52%), Positives = 145/214 (67%), Gaps = 3/214 (1%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GKCGV+VIR+SGP + AL + + + +PR A+LR + DP S LD GL LWFP
Sbjct: 92 GKCGVAVIRISGPASGPAL--LGLMASKALPQPRVATLRLLQDPGSCEPLDRGLILWFPG 149
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGEDC EF VHG AV++A+LGAL +P LRPAE GEF+KRAF N KL LT+ E L
Sbjct: 150 PHSFTGEDCAEFHVHGGPAVVSAVLGALGSIPDLRPAEAGEFTKRAFQNGKLSLTEVEGL 209
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
GDLI AETE QR++AL Q++G L QL W + + +LA +EAYIDFSED+ IE+ L
Sbjct: 210 GDLIHAETEAQRRQALRQLQGELGQLCQGWGETLTTALAHLEAYIDFSEDDNIEEGALQR 269
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
V V L ++ H++ + + G R+RSG VI
Sbjct: 270 VDGAVRGLREALLAHLQDARR-GQRLRSGAHVVI 302
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
+ TIFALSSG GKCGV+VIR+SGP + AL + + +P+PR A+LR + DP S
Sbjct: 81 RATIFALSSGQGKCGVAVIRISGPASGPAL--LGLMASKALPQPRVATLRLLQDPGSCEP 138
Query: 87 LDEGLCLWFP 96
LD GL LWFP
Sbjct: 139 LDRGLILWFP 148
>gi|383768478|ref|YP_005447541.1| tRNA modification GTPase MnmE [Bradyrhizobium sp. S23321]
gi|381356599|dbj|BAL73429.1| tRNA modification GTPase MnmE [Bradyrhizobium sp. S23321]
Length = 452
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 131/335 (39%), Positives = 189/335 (56%), Gaps = 65/335 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
++V+RVSGP+ L ++A K+ PR+AS R + D V + + D+ + LWFP P
Sbjct: 18 SAIAVVRVSGPEAGLVLTTLAG----KLPAPRHASHRLLRDGVGQPI-DDSVVLWFPAPA 72
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
S TGED EF VHG AV++A+L A++ +P R AE GEF++RAF N KLDLT+ E L D
Sbjct: 73 SATGEDVAEFHVHGGRAVLSALLAAISVIPNTRAAESGEFTRRAFENGKLDLTEAEGLDD 132
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI A+T+ QR++AL Q++G L +WR+ I+E+ A +EA IDFS+ E ++ + +R
Sbjct: 133 LIHADTDRQRRQALRQLQGLLGDRARDWRERIIEASALIEAGIDFSD----EGDVPSELR 188
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
+ V+ IR+ + D I N + +Q
Sbjct: 189 APAVKA-----------------IRA----------------------LHDEIANVLAAQ 209
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
H E R+R G+ I GEPNVGKS+LMN L +++++IV+ GTT
Sbjct: 210 ---------GHSE-------RLRDGLVVAIAGEPNVGKSTLMNQLARREVAIVSPHAGTT 253
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
RDVIE LD+ GYPV ++DTAG+R T D +E EG
Sbjct: 254 RDVIEVQLDLDGYPVTVIDTAGIR-ETDDPVEQEG 287
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TIFALSSG ++V+RVSGP+ L ++A K+P PR+AS R + D V + +
Sbjct: 6 QTIFALSSGRAPSAIAVVRVSGPEAGLVLTTLAG----KLPAPRHASHRLLRDGVGQPI- 60
Query: 88 DEGLCLWFP 96
D+ + LWFP
Sbjct: 61 DDSVVLWFP 69
>gi|291243985|ref|XP_002741880.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
Length = 245
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 102/179 (56%), Positives = 132/179 (73%), Gaps = 2/179 (1%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
HGKCG++VIR+SGP LK + +++ PR AS+R + D VS +D L LWFP
Sbjct: 65 HGKCGIAVIRLSGPSASLVLKELTGR--KQLPIPRQASIRRLHDSVSGEHVDRALLLWFP 122
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
PNSFTGED CEF +HG IAVI+A+ AL +PG+RPAEPGEF+KRAF N KLDLT+ E
Sbjct: 123 GPNSFTGEDVCEFHIHGGIAVISALYHALDNIPGVRPAEPGEFTKRAFLNGKLDLTEVEG 182
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
LGDLI AETE QR++AL QM+G L +LY +W+ +++ A++EAYIDFSED+ IED +L
Sbjct: 183 LGDLIHAETEAQRKQALRQMEGELSKLYKDWKDRLVKCAANIEAYIDFSEDDNIEDGVL 241
>gi|452965395|gb|EME70418.1| GTPase [Magnetospirillum sp. SO-1]
Length = 441
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 133/337 (39%), Positives = 182/337 (54%), Gaps = 66/337 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV+V R+SG + AL ++ P + K R LR D E++ D+GL LWFP
Sbjct: 13 GRAGVAVWRLSGEGSGTALAALTGKPPPEPRKARRVRLR---DGTGEMI-DDGLVLWFPA 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E +HG AV A+ L +L GLRPAEPGEFS+RAF KLDLT+ EA+
Sbjct: 69 PHSFTGEDVAELHLHGGRAVAAALTARLGEL-GLRPAEPGEFSRRAFLGGKLDLTRAEAI 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL+ AET QR++AL Q+ G L L VE +
Sbjct: 128 ADLVDAETAAQRRQALRQLDGGLAGL--------------VEGW---------------- 157
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS++V+ +A +EA IDF+ DE I D +L+
Sbjct: 158 -RSRLVR---------------------------AMAHLEAVIDFA-DEDIPDTLLDQSV 188
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L + H++ + G R+R GI I+G PN GKSSL+N L ++ +IV++ G
Sbjct: 189 GEADSLRAEMAGHLD-ERRSGERLRDGIHIAILGAPNAGKSSLLNRLAGREAAIVSAQAG 247
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE HLD+ G+PVI+ DTAGLR + + IE+EG
Sbjct: 248 TTRDVIEVHLDLNGWPVIVADTAGLRDSACE-IESEG 283
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ +TI+AL+S G+ GV+V R+SG + AL ++ P P+PR A + D ++
Sbjct: 1 MSDTIYALASATGRAGVAVWRLSGEGSGTALAALTGKPP---PEPRKARRVRLRDGTGEM 57
Query: 86 VLDEGLCLWFP 96
+ D+GL LWFP
Sbjct: 58 I-DDGLVLWFP 67
>gi|381167614|ref|ZP_09876821.1| putative tRNA modification GTPase (trmE) [Phaeospirillum
molischianum DSM 120]
gi|380683368|emb|CCG41633.1| putative tRNA modification GTPase (trmE) [Phaeospirillum
molischianum DSM 120]
Length = 441
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 131/338 (38%), Positives = 182/338 (53%), Gaps = 68/338 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRN-IVDPVSEVVLDEGLCLWFP 157
G+ G++V R+SG + +AL S+ P + A LR+ +P+ D+GL LWFP
Sbjct: 13 GRAGIAVWRLSGEGSGSALSSLTGCPLPPARRAVRAVLRDHDGEPI-----DDGLVLWFP 67
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGED E +HG AV A+ AL +L GLRPAEPGEFS+RAF K+DLT EA
Sbjct: 68 APASFTGEDVVELHLHGGRAVAQALGQALARL-GLRPAEPGEFSRRAFAGGKIDLTHAEA 126
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DL+ AET QR++AL QM G+L L EWR+ ++ LA +EA IDF+E++ + ++++
Sbjct: 127 IADLVAAETSAQRRQALRQMDGSLAALIEEWRRRLVSILARLEAAIDFAEED-LPSSLID 185
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
R++ L + +H+ N+ G EI+ D +
Sbjct: 186 LTRTEAAALSADLARHLA-DNRRG-------------------------EILRDGL---- 215
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
HI L +G PN GKSSL+N L ++ +IV++
Sbjct: 216 -------------HITL----------------LGAPNAGKSSLLNRLAGREAAIVSAEA 246
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE HLD+ G+PVIL DTAGLR IE EG
Sbjct: 247 GTTRDVIEIHLDLAGWPVILADTAGLREAAGQ-IEAEG 283
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ +TI+AL+SG G+ G++V R+SG + +AL S+ P +P R A +R ++
Sbjct: 1 MADTIYALASGAGRAGIAVWRLSGEGSGSALSSLTGCP---LPPARRA-VRAVLRDHDGE 56
Query: 86 VLDEGLCLWFP 96
+D+GL LWFP
Sbjct: 57 PIDDGLVLWFP 67
>gi|73666665|ref|YP_302681.1| tRNA modification GTPase TrmE [Ehrlichia canis str. Jake]
gi|123615194|sp|Q3YT72.1|MNME_EHRCJ RecName: Full=tRNA modification GTPase MnmE
gi|72393806|gb|AAZ68083.1| tRNA modification GTPase trmE [Ehrlichia canis str. Jake]
Length = 441
Score = 218 bits (554), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 129/337 (38%), Positives = 185/337 (54%), Gaps = 68/337 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+VIRVSG D A K+ + KPR A+ ++ + E++ DE + ++F
Sbjct: 14 GKSGVAVIRVSGKD---AAKAFLHFGISSSIKPRTATFAHLYNSKGEII-DEVIIVYFVA 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED EF HGS+AVI IL L K+ PA PGEFS RAF NNK+DLT+ EA+
Sbjct: 70 PSSFTGEDVVEFHTHGSLAVIKMILAELGKI--FVPAGPGEFSLRAFLNNKVDLTRAEAI 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI +ETE+Q ++A+ QM G L++LY W
Sbjct: 128 VDLINSETEMQAKQAIRQMSGALEKLYQSW------------------------------ 157
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R Q++ + L+++EAYIDF E+ + L +
Sbjct: 158 -RQQLIDI---------------------------LSNIEAYIDFPEE--VNSAALANIG 187
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L S+E H+ ++ G R+R GI IVGEPN GKS+L N L ++ I+IV+ G
Sbjct: 188 YLLNNLQESLECHLN-DDRKGERLRQGIYIAIVGEPNSGKSTLFNHLAKRDIAIVSEYAG 246
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD +E H+D+ GYP++++DTAG+R ++D+IE EG
Sbjct: 247 TTRDTLEAHIDVAGYPIVIIDTAGIR-DSADLIEQEG 282
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
I +TIFAL + GK GV+VIRVSG D A K+ + KPR A+ ++ + ++
Sbjct: 2 IMSTIFALCTPWGKSGVAVIRVSGKD---AAKAFLHFGISSSIKPRTATFAHLYNSKGEI 58
Query: 86 VLDEGLCLWF 95
+ DE + ++F
Sbjct: 59 I-DEVIIVYF 67
>gi|332029663|gb|EGI69552.1| tRNA modification GTPase GTPBP3, mitochondrial [Acromyrmex
echinatior]
Length = 473
Score = 217 bits (553), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 121/306 (39%), Positives = 177/306 (57%), Gaps = 60/306 (19%)
Query: 130 KPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL 189
+PR A L+ I DP + V+D GLCLWFP P+SFTGED EF VHG A++ ++ AL++L
Sbjct: 8 EPRRAFLQKIRDPETREVIDNGLCLWFPGPHSFTGEDSVEFHVHGGSAILTKLMQALSRL 67
Query: 190 PGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWR 249
+ PA PGEF++RAF+NNKLDLT+ E L DLI+AETE QR++AL Q+ G L++LY+ WR
Sbjct: 68 Q-VHPALPGEFTRRAFYNNKLDLTEVEGLADLIEAETECQRKQALLQVDGILRKLYNSWR 126
Query: 250 QLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK 309
+++ ES+AS+EAYIDF E++ IE++++ + QL +E+H+ + G +R+G++
Sbjct: 127 KVLSESVASIEAYIDFGEEDNIENDVIQNAHHALRQLMRELEEHL-ADGRRGEILRNGVR 185
Query: 310 SVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSV 369
+VI E + + ++LN +VQ + +I
Sbjct: 186 TVI----------IGEPNVGKSSLLN----HLVQRNAAI--------------------- 210
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
VT I GTTRDVIE +I GYPV++ DTAG+ D
Sbjct: 211 -----------------------VTPIAGTTRDVIELTANISGYPVLIADTAGITEDIGD 247
Query: 430 IIETEG 435
I+E EG
Sbjct: 248 IVEAEG 253
>gi|254456366|ref|ZP_05069795.1| tRNA modification GTPase TrmE [Candidatus Pelagibacter sp.
HTCC7211]
gi|207083368|gb|EDZ60794.1| tRNA modification GTPase TrmE [Candidatus Pelagibacter sp.
HTCC7211]
Length = 443
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 130/332 (39%), Positives = 189/332 (56%), Gaps = 63/332 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G G+++IRVSGPDT N LK + ++ + KPR A+LR I + ++DEG+ LWFP
Sbjct: 11 GISGIAIIRVSGPDTSNVLKLLT---NKSLPKPRVATLRKINKINTSELIDEGILLWFPA 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P S+TGED E QVHGS AVI+AI +++K+ R AEPGEF+K AF N K++L + E++
Sbjct: 68 PESYTGEDMAEIQVHGSKAVIDAIHSSISKVENCRLAEPGEFTKLAFQNGKINLLKAESI 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AETE+QR++A+ M G S D+ N
Sbjct: 128 ADLISAETEIQRKQAIKIMNGK-------------------------SADQ------FNF 156
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+R +++++ L+ VEA IDF DE + ++IL ++
Sbjct: 157 LREKLLKI---------------------------LSHVEAKIDFP-DEDLPNDILKEIK 188
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ +I+K ++ K G RIR G K I+G N GKSSL+N L + ++IV+ I G
Sbjct: 189 KSSDEVLINIKKILD-DQKVGERIREGFKIAILGPTNAGKSSLLNHLSNRDVAIVSEIAG 247
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDVIE HL+I GYPVI+ DTAG+R + ++I
Sbjct: 248 TTRDVIETHLNIDGYPVIVSDTAGIRDSKNEI 279
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 144/285 (50%), Gaps = 66/285 (23%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TI++LSSG G G+++IRVSGPDT N LK + ++ +PKPR A+LR I + ++D
Sbjct: 2 TIYSLSSGPGISGIAIIRVSGPDTSNVLKLLT---NKSLPKPRVATLRKINKINTSELID 58
Query: 89 EGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVL 148
EG+ LWFP P++ Y + +++ + + ++D
Sbjct: 59 EGILLWFP-------------APES---------YTGEDMAEIQVHGSKAVIDA------ 90
Query: 149 DEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNN 208
+H SI +K+ R AEPGEF+K AF N
Sbjct: 91 -----------------------IHSSI----------SKVENCRLAEPGEFTKLAFQNG 117
Query: 209 KLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSED 268
K++L + E++ DLI AETE+QR++A+ M G ++ R+ +L+ L+ VEA IDF D
Sbjct: 118 KINLLKAESIADLISAETEIQRKQAIKIMNGKSADQFNFLREKLLKILSHVEAKIDFP-D 176
Query: 269 EIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
E + ++IL ++ ++ +I+K ++ K G RIR G K I
Sbjct: 177 EDLPNDILKEIKKSSDEVLINIKKILD-DQKVGERIREGFKIAIL 220
>gi|397643422|gb|EJK75853.1| hypothetical protein THAOC_02405 [Thalassiosira oceanica]
Length = 612
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 151/433 (34%), Positives = 203/433 (46%), Gaps = 136/433 (31%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSM-------ACYPDQKVPKPRYASLRNIV 79
++T+FALSSG G V+VIR+SG + +ALK + A K+P PR ASLR +
Sbjct: 104 EDTVFALSSGSGVTAVAVIRISGRNAFDALKQLLSPYSLEAGAEPPKLPTPRMASLRILY 163
Query: 80 DPVSKVVLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNI 139
DP+S D LN ++
Sbjct: 164 DPLSS--------------------------SDHLNRMR--------------------- 176
Query: 140 VDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGE 199
DP LD L L FP P SFTGED E HGS AV + +L AL+ L +RPA+PGE
Sbjct: 177 -DP-----LDSALVLIFPGPRSFTGEDIVELHCHGSRAVTSGVLKALSSLDSVRPADPGE 230
Query: 200 FSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASV 259
F++RA+ N KL L + EAL DLI A+T LQR++AL Q G L +LY WR+ +++ LA
Sbjct: 231 FTQRAYGNGKLGLVEVEALADLIVADTSLQRKQALQQFDGRLSRLYLGWRKELIKGLAHA 290
Query: 260 EAYIDFSEDEII--EDNILNT------------VRSQVVQLHGSIEKHIELSNKCGVRIR 305
EA IDF +DE + ED+ ++ VR ++ L ++++H+E
Sbjct: 291 EAVIDFGDDEALGEEDSSFDSSENDGGMSVWADVRPRISSLREAMDRHLE---------- 340
Query: 306 SGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSG 365
D S E++ D G+RI
Sbjct: 341 ----------------DASRGELLRD---------------------------GLRI--- 354
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425
IVG PN GKSSL+N L + +IV+S PGTTRDV+E LD+ G LLDTAG+R
Sbjct: 355 ---AIVGRPNAGKSSLLNLLAGRDAAIVSSTPGTTRDVVEVVLDLDGVRCSLLDTAGVRE 411
Query: 426 TTS---DIIETEG 435
D IE EG
Sbjct: 412 EIEDGVDEIEIEG 424
>gi|328793826|ref|XP_001121197.2| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
[Apis mellifera]
Length = 488
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 148/217 (68%), Gaps = 9/217 (4%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSK--PRYASLRNIVDPVSEVVLDEGLCLW 155
+GKCGV+VIR+SGP L ALK M K+SK PR A L+ I DP ++ +LD GLCLW
Sbjct: 41 YGKCGVAVIRISGPKALIALKRMT-----KISKLIPRMALLKKIYDPETKEMLDRGLCLW 95
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
FP PNSFTGEDC EF VHG AVI +IL AL KL + A PGEF++RAF N KLDLT+
Sbjct: 96 FPGPNSFTGEDCIEFHVHGGPAVITSILNALAKL-HFQLAFPGEFTRRAFLNGKLDLTEA 154
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
E +GDLI+AETE QR++A +Q G+L +Y WR ++L LA++EAYIDF+E+ + NI
Sbjct: 155 EGIGDLIEAETEKQRKQASNQTIGSLYHIYESWRIILLNILANLEAYIDFAEEHNVTSNI 214
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
L + + +L+ I++H+ K G +RSGI I
Sbjct: 215 LEDTKINIQKLYVKIQQHLSDERK-GEILRSGIHVAI 250
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 85/122 (69%), Gaps = 1/122 (0%)
Query: 314 LASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGE 373
LA++EAYIDF+E+ + NIL + + +L+ I++H+ K G +RSGI I+G+
Sbjct: 195 LANLEAYIDFAEEHNVTSNILEDTKINIQKLYVKIQQHLSDERK-GEILRSGIHVAILGK 253
Query: 374 PNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIET 433
PNVGKSS +N L +K +IVTS+PGTTRD+IE +DI GYP+IL DTAG+R + IE
Sbjct: 254 PNVGKSSFLNLLSKKNAAIVTSLPGTTRDIIELTIDICGYPMILADTAGIRNNPENEIEI 313
Query: 434 EG 435
EG
Sbjct: 314 EG 315
>gi|67459606|ref|YP_247230.1| tRNA modification GTPase TrmE [Rickettsia felis URRWXCal2]
gi|75535997|sp|Q4UK70.1|MNME_RICFE RecName: Full=tRNA modification GTPase MnmE
gi|67005139|gb|AAY62065.1| tRNA modification GTPase TrmE [Rickettsia felis URRWXCal2]
Length = 480
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 134/369 (36%), Positives = 192/369 (52%), Gaps = 92/369 (24%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPD--------QKVSKPR-------YASLRNIVDPV 143
GK GV+V R+SGP +L L+ + D Q+++ P+ +A V+P+
Sbjct: 12 GKAGVAVFRISGPKSLEVLQLLTGRADFKPRIMYYQQITVPKTIVNSASFAYKEPRVEPI 71
Query: 144 ------SEVV-----------LDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGAL 186
S++V +D + ++F PNSFTGED E HGS A+ ++ AL
Sbjct: 72 TNRRATSDIVSEGGSIDYKELIDNAMVVYFKSPNSFTGEDVVEIHTHGSKAISIMLINAL 131
Query: 187 TKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYS 246
+ +R AE GEF+KRAF NNK DLT E + DLI AET +Q ++A+ Q G L++
Sbjct: 132 LNIADIRLAEAGEFTKRAFLNNKFDLTAAEGIADLINAETIMQHRQAIRQASGGLEE--- 188
Query: 247 EWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRS 306
+ N R+Q++++
Sbjct: 189 ----------------------------LYNNWRTQLLKI-------------------- 200
Query: 307 GIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGI 366
++ +EAYIDF DE I D++LN V + L I ++ N+ G + SG+
Sbjct: 201 -------ISLLEAYIDFP-DEDIPDSVLNDVNNTHKNLVNEISNYLN-DNRRGELLNSGL 251
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426
K I+G PNVGKSSL+NFL Q+ I+IV++I GTTRD+IE HLDIGGYP+IL DTAG+R
Sbjct: 252 KLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIREE 311
Query: 427 TSDIIETEG 435
+SDIIE EG
Sbjct: 312 SSDIIEQEG 320
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 117/346 (33%), Positives = 176/346 (50%), Gaps = 52/346 (15%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + D KPR
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRAD---FKPR----------------- 42
Query: 89 EGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSE--- 145
+++ +++ P T+ S A Y + +V + R D VSE
Sbjct: 43 ---IMYYQ----------QITVPKTIVNSASFA-YKEPRVEP--ITNRRATSDIVSEGGS 86
Query: 146 ----VVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFS 201
++D + ++F PNSFTGED E HGS A+ ++ AL + +R AE GEF+
Sbjct: 87 IDYKELIDNAMVVYFKSPNSFTGEDVVEIHTHGSKAISIMLINALLNIADIRLAEAGEFT 146
Query: 202 KRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEA 261
KRAF NNK DLT E + DLI AET +Q ++A+ Q G L++LY+ WR +L+ ++ +EA
Sbjct: 147 KRAFLNNKFDLTAAEGIADLINAETIMQHRQAIRQASGGLEELYNNWRTQLLKIISLLEA 206
Query: 262 YIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK-SVICLASV--E 318
YIDF DE I D++LN V + L I ++ N+ G + SG+K ++I +V
Sbjct: 207 YIDFP-DEDIPDSVLNDVNNTHKNLVNEISNYLN-DNRRGELLNSGLKLAIIGPPNVGKS 264
Query: 319 AYIDF--SEDEIIEDNILNTVRSQVVQLHGSIEKH-IELSNKCGVR 361
+ ++F D I NI T R +++ H I + I L + G+R
Sbjct: 265 SLLNFLMQRDIAIVSNIAGTTR-DIIEGHLDIGGYPIILQDTAGIR 309
>gi|209883526|ref|YP_002287383.1| tRNA modification GTPase TrmE [Oligotropha carboxidovorans OM5]
gi|337739403|ref|YP_004631131.1| tRNA modification GTPase [Oligotropha carboxidovorans OM5]
gi|386028422|ref|YP_005949197.1| tRNA modification GTPase [Oligotropha carboxidovorans OM4]
gi|209871722|gb|ACI91518.1| tRNA modification GTPase TrmE [Oligotropha carboxidovorans OM5]
gi|336093490|gb|AEI01316.1| tRNA modification GTPase [Oligotropha carboxidovorans OM4]
gi|336097067|gb|AEI04890.1| tRNA modification GTPase [Oligotropha carboxidovorans OM5]
Length = 442
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 123/335 (36%), Positives = 181/335 (54%), Gaps = 65/335 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
++++RVSGP L+ + C ++ +PR A+L + P + + D+ + LWFP P+
Sbjct: 18 AAIAIVRVSGPQVPQVLERL-C---GRLPQPRTATLVTLTSPGTGPI-DQAVALWFPAPH 72
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
S TGED EFQ+HG AVI A+ AL K+ GLRPAEPGEF++RAF N KLDLT+ E L D
Sbjct: 73 SATGEDVAEFQLHGGRAVIAALFAALEKIDGLRPAEPGEFTRRAFENGKLDLTEAEGLDD 132
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI A+T+ QR++AL ++G L W R
Sbjct: 133 LIHADTDRQRRQALRHLQGLLGHRAESW-------------------------------R 161
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
+Q+++ +A +EA IDFS++ + ++ ++
Sbjct: 162 AQIIE---------------------------AMALIEAGIDFSDEGDVSTELMAPALAR 194
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
V L IE+ + S + R+R G++ I G PN GKS+L+N L +++ +IV+ GTT
Sbjct: 195 VASLRTEIEETLAASAQS-ERLREGLQVAIAGPPNAGKSTLLNRLARREAAIVSPHAGTT 253
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
RD+IE HLD+ GYPV L+DTAGLR SD +E EG
Sbjct: 254 RDIIEVHLDLDGYPVTLIDTAGLR-DASDPVEQEG 287
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TI+AL+SG ++++RVSGP L+ + C ++P+PR A+L + P + + D
Sbjct: 7 TIYALASGRPPAAIAIVRVSGPQVPQVLERL-C---GRLPQPRTATLVTLTSPGTGPI-D 61
Query: 89 EGLCLWFPR-HGKCGVSV 105
+ + LWFP H G V
Sbjct: 62 QAVALWFPAPHSATGEDV 79
>gi|355703298|gb|EHH29789.1| hypothetical protein EGK_10299 [Macaca mulatta]
Length = 497
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 134/343 (39%), Positives = 181/343 (52%), Gaps = 67/343 (19%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CG++VIR SGP + +AL+ + D + R+ASLR + DP S LD L LWFP
Sbjct: 43 QGRCGIAVIRTSGPSSGHALRILTAARD--LPPARHASLRLLSDPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E
Sbjct: 101 GPRSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILE-----SLASVEAYIDFSEDEIIE 272
L DLI AETE QR++AL Q+ G L L W + + + +LA VEAYIDF ED+ +E
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKASSPFALAHVEAYIDFGEDDNLE 220
Query: 273 DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDN 332
+ +L +V L ++ H+ + + G R+RSG V+
Sbjct: 221 EGVLEQADIEVRALEVALGAHLRDARR-GQRLRSGAHVVVT------------------G 261
Query: 333 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
N +S +V L LS K S++ EP
Sbjct: 262 PPNAGKSSLVNL---------LSRK--------PVSIVSPEP------------------ 286
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 287 -----GTTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 323
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 51/82 (62%), Gaps = 5/82 (6%)
Query: 18 SRRCSHLAIKN---TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYAS 74
+RR S A TIFALSSG G+CG++VIR SGP + +AL+ + D +P R+AS
Sbjct: 21 TRRSSGAAAPGSGATIFALSSGQGRCGIAVIRTSGPSSGHALRILTAARD--LPPARHAS 78
Query: 75 LRNIVDPVSKVVLDEGLCLWFP 96
LR + DP S LD L LWFP
Sbjct: 79 LRLLSDPRSGEPLDRALVLWFP 100
>gi|392592858|gb|EIW82184.1| tRNA modification GTPase TrmE [Coniophora puteana RWD-64-598 SS2]
Length = 552
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 137/344 (39%), Positives = 180/344 (52%), Gaps = 68/344 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVS-----KPRYASLRNIVDPVSEVVLDEGLC 153
GK GV+VIRVSGPD L ++ C P +K +P IV PV VLD+GL
Sbjct: 88 GKGGVAVIRVSGPDALK-VRGAICRPVKKAKGAEPPRPWVMERCQIVHPVDGRVLDDGLA 146
Query: 154 LWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLT 213
++F P SFT ED E +H A+I+ +L AL+ LP RPAE GEF++RAF +LDLT
Sbjct: 147 VYFKGPKSFTTEDVLELHLHSGRAIISGVLNALSALPCCRPAEAGEFTRRAFEGGRLDLT 206
Query: 214 QTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIED 273
Q E L DLI AETE QR+ AL G
Sbjct: 207 QVEGLKDLINAETEAQRRMALEAAGG---------------------------------- 232
Query: 274 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSED--EIIED 331
RSQ L I K C VE +IDF ED E+ ++
Sbjct: 233 ----VARSQFESLRTKIIK--------------------CQVFVEGFIDFGEDVDELGQE 268
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
++L+ + + + I+ H+ N+ G +RSGI+ I G PN GKSSL+NFL Q++ +
Sbjct: 269 HMLSEAKKRAQDICHEIQNHLN-DNRRGEILRSGIRLAIFGPPNAGKSSLLNFLAQREAA 327
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IVT IPGTTRDV+E LD+GG PVI+ DTAG+R TSD++E+ G
Sbjct: 328 IVTPIPGTTRDVLELTLDLGGLPVIVADTAGIR-KTSDLVESVG 370
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 131/293 (44%), Gaps = 70/293 (23%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKV-----PKPRYASLRNIVDP 81
+ TI+ALS+ GK GV+VIRVSGPD L ++ C P +K P+P IV P
Sbjct: 77 RQTIYALSTPFGKGGVAVIRVSGPDALK-VRGAICRPVKKAKGAEPPRPWVMERCQIVHP 135
Query: 82 VSKVVLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVD 141
V VLD+GL ++F GP + +
Sbjct: 136 VDGRVLDDGLAVYF-------------KGPKSFT------------------------TE 158
Query: 142 PVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFS 201
V E+ L G + N+ + CC RPAE GEF+
Sbjct: 159 DVLELHLHSGRAIISGVLNALSALPCC------------------------RPAEAGEFT 194
Query: 202 KRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEA 261
+RAF +LDLTQ E L DLI AETE QR+ AL G + + R I++ VE
Sbjct: 195 RRAFEGGRLDLTQVEGLKDLINAETEAQRRMALEAAGGVARSQFESLRTKIIKCQVFVEG 254
Query: 262 YIDFSE--DEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
+IDF E DE+ ++++L+ + + + I+ H+ N+ G +RSGI+ I
Sbjct: 255 FIDFGEDVDELGQEHMLSEAKKRAQDICHEIQNHLN-DNRRGEILRSGIRLAI 306
>gi|57238770|ref|YP_179906.1| tRNA modification GTPase TrmE [Ehrlichia ruminantium str.
Welgevonden]
gi|58578693|ref|YP_196905.1| tRNA modification GTPase TrmE [Ehrlichia ruminantium str.
Welgevonden]
gi|81819295|sp|Q5HCD7.1|MNME_EHRRW RecName: Full=tRNA modification GTPase MnmE
gi|57160849|emb|CAH57749.1| putative tRNA modification GTPase [Ehrlichia ruminantium str.
Welgevonden]
gi|58417319|emb|CAI26523.1| tRNA modification GTPase [Ehrlichia ruminantium str. Welgevonden]
Length = 439
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 130/337 (38%), Positives = 185/337 (54%), Gaps = 68/337 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+VIRVSG D A+K+ + KPR A+ + + EV+ DE + ++F
Sbjct: 12 GKSGVAVIRVSGQD---AVKTFMHFKISNAIKPRVATFTPLYNAAHEVI-DEVIVVYFSA 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E HGSIAVI IL L K+ PA PGEFS RAF NNK+DLT+ EA+
Sbjct: 68 PNSFTGEDVVELHTHGSIAVIRMILCELGKI--FIPAGPGEFSLRAFLNNKVDLTRAEAI 125
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AETE+Q ++A+ QM G+L++LY W
Sbjct: 126 VDLINAETEMQAKQAIRQMSGSLEKLYQSW------------------------------ 155
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R Q++ + L+++EAYIDF E+ + + + +
Sbjct: 156 -RQQLIDV---------------------------LSNMEAYIDFPEE--VTSSAVENIS 185
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ S+E H+ K G +R GI I+GEPN GKS+L N L ++ I+IV+ G
Sbjct: 186 FLLDKIKESLENHLNDGRK-GEILRQGIYVAILGEPNSGKSTLFNHLAKRDIAIVSEYAG 244
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDV+E H+DI GYP++++DTAG+R ++D +E EG
Sbjct: 245 TTRDVLETHIDIAGYPIVIIDTAGIR-DSNDPVEQEG 280
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFAL + GK GV+VIRVSG D A+K+ + KPR A+ + + +V+
Sbjct: 2 STIFALCTPWGKSGVAVIRVSGQD---AVKTFMHFKISNAIKPRVATFTPLYNAAHEVI- 57
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSGPDTLNALKSMAC 122
DE + ++F + G V+ + ++ ++ + C
Sbjct: 58 DEVIVVYFSAPNSFTGEDVVELHTHGSIAVIRMILC 93
>gi|56417300|ref|YP_154374.1| tRNA modification GTPase TrmE [Anaplasma marginale str. St. Maries]
gi|255004780|ref|ZP_05279581.1| tRNA modification GTPase TrmE [Anaplasma marginale str. Virginia]
gi|81821241|sp|Q5P9B1.1|MNME_ANAMM RecName: Full=tRNA modification GTPase MnmE
gi|56388532|gb|AAV87119.1| thiophene and furan oxidation protein [Anaplasma marginale str. St.
Maries]
Length = 443
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 129/343 (37%), Positives = 191/343 (55%), Gaps = 68/343 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+VIRVSG D ALKSM ++ + R A+ + + D + + D+ + L+FP
Sbjct: 15 GKSGVAVIRVSGHD---ALKSMQLLGVKEPVRSRVATCKTLYDKKRQPI-DQAVVLYFPG 70
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E QVHGS+AVI + L + R AEPGEFS RAF N K+DLT+ E +
Sbjct: 71 PGSFTGEDVVELQVHGSLAVIRLLFEELQTV--FRIAEPGEFSLRAFLNGKIDLTRAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL+ +ETE Q L+Q +++ + + +
Sbjct: 129 ADLVNSETEAQ-----------LRQAFAQSSGFL--------------------ERLYEE 157
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS +V + L+ +EAYIDF +D + IL +V
Sbjct: 158 WRSSLVDI---------------------------LSDLEAYIDFPDD--VSPQILRSVH 188
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+V +LH S+E+H++ ++ G R+R G++ I+G+PNVGKS+L N L ++ ++IV+ PG
Sbjct: 189 DRVKELHNSLERHLDDGHR-GERLRHGMRVAILGKPNVGKSTLFNHLARRDMAIVSEYPG 247
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKN 441
TTRDV+E H+DIGGYP I++DTAG+R +T D +E EG + K+
Sbjct: 248 TTRDVLEAHVDIGGYPFIVVDTAGIREST-DFVEREGIMRAKS 289
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 7/129 (5%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFALS+ GK GV+VIRVSG D ALKSM ++ + R A+ + + D + +
Sbjct: 5 DTIFALSTPMGKSGVAVIRVSGHD---ALKSMQLLGVKEPVRSRVATCKTLYDK-KRQPI 60
Query: 88 DEGLCLWFPRHGK-CGVSVIRVSGPDTLNALKSM--ACYPDQKVSKPRYASLRNIVDPVS 144
D+ + L+FP G G V+ + +L ++ + ++++P SLR ++
Sbjct: 61 DQAVVLYFPGPGSFTGEDVVELQVHGSLAVIRLLFEELQTVFRIAEPGEFSLRAFLNGKI 120
Query: 145 EVVLDEGLC 153
++ EG+
Sbjct: 121 DLTRAEGIA 129
>gi|358060389|dbj|GAA93794.1| hypothetical protein E5Q_00440 [Mixia osmundae IAM 14324]
Length = 489
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 131/343 (38%), Positives = 182/343 (53%), Gaps = 67/343 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYA------SLRNIVDPVSEVVLDEGL 152
GK ++++R+SG D L M P + P SLR +VDPV++ LDE L
Sbjct: 33 GKAAIAIVRISGSDALQVWHQMTRSPKAHRAPPVRPPVPRRASLRQVVDPVTQDPLDEAL 92
Query: 153 CLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG-LRPAEPGEFSKRAFFNNKLD 211
L+FP+ + TG+D E +HGS AV A+L AL+KL RPAEPGEF++RA+ + K+D
Sbjct: 93 VLYFPRSVALTGQDLVELHLHGSRAVTRAVLEALSKLSDHFRPAEPGEFTQRAYESGKMD 152
Query: 212 LTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEII 271
LT E L DLI++ETE QRQ AL
Sbjct: 153 LTAVEGLRDLIESETEAQRQLAL------------------------------------- 175
Query: 272 EDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIED 331
Q GS+ K EL IR + + +A +EA IDF EDE IED
Sbjct: 176 ------------AQATGSLHKQYEL-------IRQQL--IEAMALIEAIIDFGEDENIED 214
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
+++ R++V L +++ + S + +R GI+ I+G PN GKS+L N+L Q++ S
Sbjct: 215 GVIDLARAKVASLRETLQARLTRSRSSEI-VRQGIRVAILGPPNAGKSTLFNWLVQREAS 273
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETE 434
IVT+ PGTTRD+I+ LD GYP++LLDTAGLR D+ E E
Sbjct: 274 IVTAHPGTTRDIIQTSLDFHGYPLVLLDTAGLR-QGQDVHEVE 315
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 133/292 (45%), Gaps = 67/292 (22%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYA------SLRNIVD 80
++TI+A S+ GK ++++R+SG D L M P P SLR +VD
Sbjct: 22 RDTIYASSTAPGKAAIAIVRISGSDALQVWHQMTRSPKAHRAPPVRPPVPRRASLRQVVD 81
Query: 81 PVSKVVLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIV 140
PV++ LDE L L+FPR + ++G D L + + + V++ +L +
Sbjct: 82 PVTQDPLDEALVLYFPRS-------VALTGQD----LVELHLHGSRAVTRAVLEALSKLS 130
Query: 141 DPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEF 200
D +P FT
Sbjct: 131 DHFRPA-----------EPGEFT------------------------------------- 142
Query: 201 SKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVE 260
+RA+ + K+DLT E L DLI++ETE QRQ AL Q G+L + Y RQ ++E++A +E
Sbjct: 143 -QRAYESGKMDLTAVEGLRDLIESETEAQRQLALAQATGSLHKQYELIRQQLIEAMALIE 201
Query: 261 AYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
A IDF EDE IED +++ R++V L +++ + S + +R GI+ I
Sbjct: 202 AIIDFGEDENIEDGVIDLARAKVASLRETLQARLTRSRSSEI-VRQGIRVAI 252
>gi|119605004|gb|EAW84598.1| GTP binding protein 3 (mitochondrial), isoform CRA_b [Homo sapiens]
Length = 497
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 134/343 (39%), Positives = 182/343 (53%), Gaps = 67/343 (19%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CG++VIR SGP + +AL+ + D ++ R+ASLR + DP S LD L LWFP
Sbjct: 43 QGRCGIAVIRTSGPASGHALRILTAPRDLPLA--RHASLRLLSDPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E
Sbjct: 101 GPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILE-----SLASVEAYIDFSEDEIIE 272
L DLI AETE QR++AL Q+ G L L W + + + +LA VEAYIDF ED+ +E
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKASPPFALAHVEAYIDFGEDDNLE 220
Query: 273 DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDN 332
+ +L +V L ++ H+ + + G R+RSG V+
Sbjct: 221 EGVLEQADIEVRALQVALGAHLRDARR-GQRLRSGAHVVVT------------------G 261
Query: 333 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
N +S +V L LS K S++ EP
Sbjct: 262 PPNAGKSSLVNL---------LSRK--------PVSIVSPEP------------------ 286
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 287 -----GTTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 323
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+ + D +P R+ASLR + DP S LD
Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRD--LPLARHASLRLLSDPRSGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>gi|167648978|ref|YP_001686641.1| tRNA modification GTPase TrmE [Caulobacter sp. K31]
gi|189036195|sp|B0T6E0.1|MNME_CAUSK RecName: Full=tRNA modification GTPase MnmE
gi|167351408|gb|ABZ74143.1| tRNA modification GTPase TrmE [Caulobacter sp. K31]
Length = 447
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 132/329 (40%), Positives = 178/329 (54%), Gaps = 68/329 (20%)
Query: 107 RVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGED 166
R+SG + + ++ +A + KPR A LR + V LD+ L LWF P S+TGED
Sbjct: 21 RISGARSADIVRGLAG----DLPKPRRAVLRQLTR--DGVALDDALVLWFQGPASYTGED 74
Query: 167 CCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAET 226
EF VHG AV+ A+L AL GLR AEPGEF++RAF N KLDLTQ E + DLI AET
Sbjct: 75 AAEFHVHGGRAVVEAVLEALAA-EGLRLAEPGEFTRRAFENGKLDLTQAEGVADLIDAET 133
Query: 227 ELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQL 286
E QR++AL Q+ G L Q Y WR L++++LA +EA +DF ++E+ ED
Sbjct: 134 EAQRRQALGQLGGALSQRYEAWRGLLVQALAMLEAAVDFPDEELPED------------- 180
Query: 287 HGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHG 346
R R G++ ++EA I + +++ R + V
Sbjct: 181 -------------VAARARPGLE------ALEAEIGAA--------LVDASRGRRV---- 209
Query: 347 SIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEK 406
+ G RI +VG PN GKS+L+N L ++ +IVTS PGTTRD+IE
Sbjct: 210 ----------RDGYRI------ALVGAPNAGKSTLLNALVERDAAIVTSTPGTTRDIIEV 253
Query: 407 HLDIGGYPVILLDTAGLRTTTSDIIETEG 435
L +GGY +L DTAGLR T D IE EG
Sbjct: 254 PLTLGGYKTLLADTAGLR-KTEDTIEAEG 281
>gi|428174782|gb|EKX43676.1| hypothetical protein GUITHDRAFT_50679, partial [Guillardia theta
CCMP2712]
Length = 305
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 123/337 (36%), Positives = 181/337 (53%), Gaps = 62/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV+V+R+SG D M D+ + + R+A R ++DP + V+D + L F
Sbjct: 12 GRGGVAVVRMSGKDAWKRANEMV---DKSMEQERFAYYRRVLDPRTGDVIDHAVLLLFRG 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P S+TGED EFQ+HGS AV++A+L L P RPAE GEF++RA N K+DL + E +
Sbjct: 69 PRSYTGEDSAEFQLHGSPAVVDALLQCLASFPSCRPAEAGEFTRRALLNGKVDLVEAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A+TE+ Q K ++QL E ++ N
Sbjct: 129 ADLIHADTEM-------QRKVAVRQLGGEVSRM------------------------YNG 157
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R ++V C+A VEA+IDF EDE I ++ + R
Sbjct: 158 WREELVA---------------------------CIAHVEAFIDFGEDEEIGTDVFLSSR 190
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ Q+ GS+ K + S+KCG +R G++ V+VG+PN GKSSL+N L +++ +IV PG
Sbjct: 191 QRASQVCGSM-KQLLASDKCGEAMREGVQVVLVGKPNSGKSSLLNALARRRAAIVCEQPG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD++E L++ G PV++ DTAGLR D +E EG
Sbjct: 250 TTRDIVEVKLNLAGMPVMVKDTAGLRKEAGDAVEEEG 286
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 69/132 (52%), Gaps = 8/132 (6%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
++TIFALSS G+ GV+V+R+SG D M D+ + + R+A R ++DP + V
Sbjct: 1 EDTIFALSSPPGRGGVAVVRMSGKDAWKRANEMV---DKSMEQERFAYYRRVLDPRTGDV 57
Query: 87 LDEGLCLWF--PRH--GKCGVSVIRVSGPDTLNA-LKSMACYPDQKVSKPRYASLRNIVD 141
+D + L F PR G+ P ++A L+ +A +P + ++ + R +++
Sbjct: 58 IDHAVLLLFRGPRSYTGEDSAEFQLHGSPAVVDALLQCLASFPSCRPAEAGEFTRRALLN 117
Query: 142 PVSEVVLDEGLC 153
++V EG+
Sbjct: 118 GKVDLVEAEGIA 129
>gi|170739706|ref|YP_001768361.1| tRNA modification GTPase TrmE [Methylobacterium sp. 4-46]
gi|205415797|sp|B0UJI9.1|MNME_METS4 RecName: Full=tRNA modification GTPase MnmE
gi|168193980|gb|ACA15927.1| tRNA modification GTPase TrmE [Methylobacterium sp. 4-46]
Length = 437
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 126/338 (37%), Positives = 175/338 (51%), Gaps = 63/338 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ V+VIR+SGP + L ++ +P PR SLR + DP + VLD L +W P
Sbjct: 13 GRAAVAVIRISGPGAASCLTALTGHPP---PLPRRLSLRQLRDPGTGEVLDRALVVWLPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FTGED E +HG AV A+L L +LPGL PAEPG F++RAF N ++DLT E L
Sbjct: 70 PATFTGEDSAELHLHGGAAVRAAVLRVLGRLPGLAPAEPGAFTRRAFLNGRMDLTAVEGL 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AETE QR++A+ Q+ G L +L VEA+ D +L
Sbjct: 130 ADLIDAETEAQRRQAMRQLDGALGRL--------------VEAW---------RDTLLG- 165
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFS-EDEIIEDNILNTV 337
LA EA +DFS E ++ E + +
Sbjct: 166 ----------------------------------VLAGAEAALDFSDEGDVDESALSASG 191
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+ ++ +I + + G R+R G V+ G PN GKS+L+N L +++ +IV+ IP
Sbjct: 192 LAAAARVRDAILAALA-EGRRGERLREGFVVVLAGPPNAGKSTLLNALARREAAIVSPIP 250
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRD IE D+ G PV+L+DTAGLR +D IE EG
Sbjct: 251 GTTRDAIEVRCDLDGLPVLLVDTAGLRDEGADPIEAEG 288
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 109/248 (43%), Gaps = 64/248 (25%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ +TIFA +SG G+ V+VIR+SGP + L ++ +P P PR SLR + DP +
Sbjct: 1 MTDTIFAPASGFGRAAVAVIRISGPGAASCLTALTGHPP---PLPRRLSLRQLRDPGTGE 57
Query: 86 VLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSE 145
VLD L +W P GP T S + + R A LR
Sbjct: 58 VLDRALVVWLP-------------GPATFTGEDSAELHLHGGAAV-RAAVLR-------- 95
Query: 146 VVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAF 205
VL L +P +FT +RAF
Sbjct: 96 -VLGRLPGLAPAEPGAFT--------------------------------------RRAF 116
Query: 206 FNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDF 265
N ++DLT E L DLI AETE QR++A+ Q+ G L +L WR +L LA EA +DF
Sbjct: 117 LNGRMDLTAVEGLADLIDAETEAQRRQAMRQLDGALGRLVEAWRDTLLGVLAGAEAALDF 176
Query: 266 SEDEIIED 273
S++ +++
Sbjct: 177 SDEGDVDE 184
>gi|403373830|gb|EJY86841.1| GTPase mss1, putative [Oxytricha trifallax]
Length = 418
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 187/374 (50%), Gaps = 79/374 (21%)
Query: 83 SKVVLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALK----------SMACYPDQKVS--- 129
S++V + + GK ++VIR++G +ALK S D K
Sbjct: 35 SQLVFKDTVYALSTGFGKSAIAVIRLTGDSATDALKLTLPINYNHESYQEESDMKFREIK 94
Query: 130 ---KPRYASLRNIVD-----PVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINA 181
KPRYA R + PV+ ++ DEG+ L+F PNSFTGED EFQ+HG AV
Sbjct: 95 DKVKPRYAHYRKFYNVFSDQPVNNII-DEGIMLYFKGPNSFTGEDMIEFQIHGGNAVKQQ 153
Query: 182 ILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNL 241
+L L+K P R AEPGEF+KRA+ N KLDL + E L DLI A++E Q + ++HQ+ G
Sbjct: 154 MLSTLSKFPTFRQAEPGEFTKRAYMNGKLDLVKAEGLNDLINAQSEEQLKLSMHQLLGRH 213
Query: 242 KQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCG 301
LY + RQ ++ LA EAYIDF DE N + QV
Sbjct: 214 SLLYEDLRQQLIRMLAHAEAYIDFEADET------NDLLPQVF----------------- 250
Query: 302 VRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVR 361
I G + + +E Y+ + NI T+
Sbjct: 251 --IDLGKSTELLSKQIEGYLR-------DANIGETI------------------------ 277
Query: 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTA 421
R G K I+G PN GKS+LMN L +++++IV+ IPGTTRD+I ++++ GY VIL DTA
Sbjct: 278 -REGFKISILGPPNAGKSTLMNLLTKRRVAIVSEIPGTTRDLISTNINLFGYNVILTDTA 336
Query: 422 GLRTTTSDIIETEG 435
GLR T D IE +G
Sbjct: 337 GLRDQTKDSIEKQG 350
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 27/163 (16%)
Query: 16 FFSRRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALK----------SMACYPDQ 65
F + S L K+T++ALS+G GK ++VIR++G +ALK S D
Sbjct: 29 FSNTNKSQLVFKDTVYALSTGFGKSAIAVIRLTGDSATDALKLTLPINYNHESYQEESDM 88
Query: 66 KVP------KPRYASLRNIVD-----PVSKVVLDEGLCLWFPR-HGKCGVSVI--RVSGP 111
K KPRYA R + PV+ ++ DEG+ L+F + G +I ++ G
Sbjct: 89 KFREIKDKVKPRYAHYRKFYNVFSDQPVNNII-DEGIMLYFKGPNSFTGEDMIEFQIHGG 147
Query: 112 DTL--NALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGL 152
+ + L +++ +P + ++P + R ++ ++V EGL
Sbjct: 148 NAVKQQMLSTLSKFPTFRQAEPGEFTKRAYMNGKLDLVKAEGL 190
>gi|383859502|ref|XP_003705233.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
[Megachile rotundata]
Length = 496
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 112/215 (52%), Positives = 144/215 (66%), Gaps = 5/215 (2%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
+GKCGV+VIR++G ALK M KPR A LRNI DP ++ VLD+GLCLWFP
Sbjct: 49 YGKCGVAVIRITGSKASIALKEMT---KMTALKPRVALLRNIHDPETKEVLDKGLCLWFP 105
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGED EF VHG AV+ +IL ALTKL A PGEF+KRAF N KLDLT+ E
Sbjct: 106 GPKSFTGEDSVEFHVHGGPAVVTSILNALTKLH-FELASPGEFTKRAFLNGKLDLTEAEG 164
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+GDLI AETE QR++A +Q G+L LY+ WR +L LAS+EAYIDFSE+ +E N+L
Sbjct: 165 IGDLIDAETEKQRKQASNQANGSLHHLYNSWRITLLNILASLEAYIDFSEEHDLESNVLE 224
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
++ + +L I++H+ K G +R+GI+ I
Sbjct: 225 NAKATIQKLSIEIQQHLSDGRK-GEILRTGIRVAI 258
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 86/122 (70%), Gaps = 1/122 (0%)
Query: 314 LASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGE 373
LAS+EAYIDFSE+ +E N+L ++ + +L I++H+ K G +R+GI+ I+G+
Sbjct: 203 LASLEAYIDFSEEHDLESNVLENAKATIQKLSIEIQQHLSDGRK-GEILRTGIRVAILGQ 261
Query: 374 PNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIET 433
PNVGKSSL+N L ++ +IV++ PGTTRDVIE +I GYP+IL DTAG+R + IE
Sbjct: 262 PNVGKSSLLNLLSKRDAAIVSAFPGTTRDVIELTANICGYPMILADTAGIRNDPENEIEV 321
Query: 434 EG 435
EG
Sbjct: 322 EG 323
>gi|357973989|ref|ZP_09137960.1| tRNA modification GTPase TrmE [Sphingomonas sp. KC8]
Length = 427
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 119/324 (36%), Positives = 166/324 (51%), Gaps = 65/324 (20%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
+ VIR+SGP ++A ++A + + R ASLR +VDP S LD LCLWFP P
Sbjct: 17 AAIGVIRISGPAAVDAFMALA----GSLPRARQASLRWLVDPASGARLDHALCLWFPGPR 72
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
+ TGED EF VHG AV+ A+ AL +LPG+RPA+ GEF++RAF N +DL + E L D
Sbjct: 73 TATGEDLAEFHVHGGRAVVAAVQQALGRLPGVRPAQAGEFTRRAFANGVMDLAEAEGLAD 132
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
L+ AETE+QR+ AL + G L +WR ILE+ A +EA +DF ++
Sbjct: 133 LLAAETEMQRRNALAVVGGALSHRVDDWRHAILEASARIEAILDFGDE------------ 180
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
G + + R+ I +++ VE D
Sbjct: 181 -------GDVPSDEAPARAIAARVSDDIAAMLAGPPVERLRD------------------ 215
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
GVR+ V+ G PN GKS+L N L + +IVT IPGTT
Sbjct: 216 ------------------GVRV------VLAGPPNAGKSTLFNALAGRDAAIVTDIPGTT 251
Query: 401 RDVIEKHLDIGGYPVILLDTAGLR 424
RD+IE + + G+P++L+DTAGLR
Sbjct: 252 RDLIEAPVSLDGWPLLLIDTAGLR 275
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
+ + TIFALSSG + VIR+SGP ++A ++A +P+ R ASLR +VDP S
Sbjct: 1 MTMSGTIFALSSGSPPAAIGVIRISGPAAVDAFMALA----GSLPRARQASLRWLVDPAS 56
Query: 84 KVVLDEGLCLWFP 96
LD LCLWFP
Sbjct: 57 GARLDHALCLWFP 69
>gi|119605005|gb|EAW84599.1| GTP binding protein 3 (mitochondrial), isoform CRA_c [Homo sapiens]
Length = 498
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 134/342 (39%), Positives = 182/342 (53%), Gaps = 67/342 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+CG++VIR SGP + +AL+ + D ++ R+ASLR + DP S LD L LWFP
Sbjct: 66 GRCGIAVIRTSGPASGHALRILTAPRDLPLA--RHASLRLLSDPRSGEPLDRALVLWFPG 123
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E L
Sbjct: 124 PQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEGL 183
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILE-----SLASVEAYIDFSEDEIIED 273
DLI AETE QR++AL Q+ G L L W + + + +LA VEAYIDF ED+ +E+
Sbjct: 184 ADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKASPPFALAHVEAYIDFGEDDNLEE 243
Query: 274 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNI 333
+L +V L ++ H+ + + G R+RSG V+
Sbjct: 244 GVLEQADIEVRALQVALGAHLRDARR-GQRLRSGAHVVVT------------------GP 284
Query: 334 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIV 393
N +S +V L LS K S++ EP
Sbjct: 285 PNAGKSSLVNL---------LSRK--------PVSIVSPEP------------------- 308
Query: 394 TSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 309 ----GTTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 345
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+ + D +P R+ASLR + DP S LD
Sbjct: 57 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRD--LPLARHASLRLLSDPRSGEPLD 114
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 115 RALVLWFP 122
>gi|58616755|ref|YP_195954.1| tRNA modification GTPase TrmE [Ehrlichia ruminantium str. Gardel]
gi|81311273|sp|Q5FF19.1|MNME_EHRRG RecName: Full=tRNA modification GTPase MnmE
gi|58416367|emb|CAI27480.1| tRNA modification GTPase [Ehrlichia ruminantium str. Gardel]
Length = 439
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 130/337 (38%), Positives = 184/337 (54%), Gaps = 68/337 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+VIRVSG D A+K+ + KPR A+ + + EV+ DE + ++F
Sbjct: 12 GKSGVAVIRVSGQD---AVKTFMHFKISNAIKPRVATFTPLYNAAHEVI-DEVIVVYFSA 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E HGSIAVI IL L K+ PA PGEFS RAF NNK+DLT+ EA+
Sbjct: 68 PNSFTGEDVVELHTHGSIAVIRMILCELGKI--FIPAGPGEFSLRAFLNNKVDLTRAEAI 125
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AETE+Q ++A+ QM G+L++LY W
Sbjct: 126 VDLINAETEMQAKQAIRQMSGSLEKLYQSW------------------------------ 155
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R Q++ + L+++EAYIDF E+ + + +
Sbjct: 156 -RQQLIDV---------------------------LSNMEAYIDFPEE--VTSFAVENIS 185
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ S+E H+ K G +R GI I+GEPN GKS+L N L ++ I+IV+ G
Sbjct: 186 FLLDKIKESLENHLNDGRK-GEILRQGIYVAILGEPNSGKSTLFNHLAKRDIAIVSEYAG 244
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDV+E H+DI GYP++++DTAG+R ++D +E EG
Sbjct: 245 TTRDVLETHIDIAGYPIVIIDTAGIR-DSNDPVEQEG 280
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 31/142 (21%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFAL + GK GV+VIRVSG D A+K+ + KPR A+ + + +V+
Sbjct: 2 STIFALCTPWGKSGVAVIRVSGQD---AVKTFMHFKISNAIKPRVATFTPLYNAAHEVI- 57
Query: 88 DEGLCLWFPR------------HGKCGVSVIRV-----------SGPDTLNALKSMACYP 124
DE + ++F H ++VIR+ +GP S+ +
Sbjct: 58 DEVIVVYFSAPNSFTGEDVVELHTHGSIAVIRMILCELGKIFIPAGPGEF----SLRAFL 113
Query: 125 DQKVSKPRYASLRNIVDPVSEV 146
+ KV R ++ ++++ +E+
Sbjct: 114 NNKVDLTRAEAIVDLINAETEM 135
>gi|406706930|ref|YP_006757283.1| tRNA modification GTPase trmE [alpha proteobacterium HIMB5]
gi|406652706|gb|AFS48106.1| tRNA modification GTPase trmE [alpha proteobacterium HIMB5]
Length = 444
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 128/340 (37%), Positives = 195/340 (57%), Gaps = 70/340 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
K G+++IR+SGP+T AL + K+ P+ A L I +P + +LD+G+ LWFP
Sbjct: 11 NKSGIAIIRISGPETKRALSKLTKI---KLPNPKEAKLCKIYNPENNELLDQGMLLWFPG 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNS+TGED EF +HGS AV++A+L +L+K+ R AEPGEF+K AF N K++L EAL
Sbjct: 68 PNSYTGEDLAEFHIHGSNAVVSALLRSLSKIENCRLAEPGEFTKIAFENGKINLLNIEAL 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI +ET+LQR++A++ + G + +
Sbjct: 128 SDLISSETDLQRRQAINLLSGKVSK----------------------------------- 152
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
K+ EL N+ + LA+VEA IDF ++++ +D IL ++
Sbjct: 153 -------------KYEELRNRL----------LKILANVEAKIDFPDEDLPKD-ILKNIK 188
Query: 339 SQ---VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
++ ++++ SI NK G +IR+G K VIVG N GKSSL+N+L +++++IV+
Sbjct: 189 NETHDIIKIINSILN----DNKVGEKIRNGFKIVIVGPTNAGKSSLLNYLSKREVAIVSE 244
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I GTTRD IE L++ GYPV++ DTAG+R T+D IE +G
Sbjct: 245 IEGTTRDTIEVSLNLDGYPVLISDTAGIR-ETNDQIEKKG 283
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 132/290 (45%), Gaps = 76/290 (26%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALS+G K G+++IR+SGP+T AL + K+P P+ A L I +P + +LD
Sbjct: 2 TIFALSTGSNKSGIAIIRISGPETKRALSKLTKI---KLPNPKEAKLCKIYNPENNELLD 58
Query: 89 EGLCLWFPRHGKCGVSVIRVSGPDTLNA--LKSMACYPDQKVSKPRYASLRNIVDPVSEV 146
+G+ LWFP GP++ L + V SL I +
Sbjct: 59 QGMLLWFP-------------GPNSYTGEDLAEFHIHGSNAVVSALLRSLSKIEN----- 100
Query: 147 VLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFF 206
C +P FT F+ +G I ++N + AL+ L
Sbjct: 101 ------C-RLAEPGEFTK---IAFE-NGKINLLN--IEALSDL----------------I 131
Query: 207 NNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFS 266
+++ DL + +A ++ + G + + Y E R +L+ LA+VEA IDF
Sbjct: 132 SSETDLQRRQA----------------INLLSGKVSKKYEELRNRLLKILANVEAKIDFP 175
Query: 267 EDEIIEDNILNTVRSQ---VVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
++++ +D IL ++++ ++++ SI NK G +IR+G K VI
Sbjct: 176 DEDLPKD-ILKNIKNETHDIIKIINSILN----DNKVGEKIRNGFKIVIV 220
>gi|154251725|ref|YP_001412549.1| tRNA modification GTPase TrmE [Parvibaculum lavamentivorans DS-1]
gi|205415789|sp|A7HSK9.1|MNME_PARL1 RecName: Full=tRNA modification GTPase MnmE
gi|154155675|gb|ABS62892.1| tRNA modification GTPase TrmE [Parvibaculum lavamentivorans DS-1]
Length = 438
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 131/337 (38%), Positives = 179/337 (53%), Gaps = 64/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G++V+R+SGP AL+++ +K PR A L DP + LD GL ++FP
Sbjct: 12 GRAGIAVLRLSGPHARAALRALTG---RKAGAPREAMLCRFRDPETHAALDRGLAIFFPA 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E +HG AVI A+L AL +LPGLR A+PGEF++RAF N KLDLT+ E L
Sbjct: 69 PASFTGEDVVELHIHGGRAVIAAMLRALGQLPGLRAAQPGEFTRRAFENGKLDLTEVEGL 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AETE QR +AL +Q+ QL EA+
Sbjct: 129 ADLIDAETEAQRAQAL-------RQMEGALGQLY-------EAW---------------- 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R+++++ LA EA IDF ++E+ D ++ +
Sbjct: 159 -RARLMR---------------------------ALAYAEAEIDFPDEEVPGD-LIAKLG 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L I H++ + G ++R G++ IVG PN GKSSL+N L ++ +IV+ G
Sbjct: 190 PDIEALETEIAAHLD-DGRRGEQLRDGVEVAIVGPPNAGKSSLLNRLAGREAAIVSDEAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDV+E LDIGG PV L DTAGLR IE EG
Sbjct: 249 TTRDVLEVRLDIGGVPVTLADTAGLREAAG-AIEQEG 284
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TI+ALS+ G+ G++V+R+SGP AL+++ +K PR A L DP + L
Sbjct: 2 ETIYALSTAAGRAGIAVLRLSGPHARAALRALTG---RKAGAPREAMLCRFRDPETHAAL 58
Query: 88 DEGLCLWFP 96
D GL ++FP
Sbjct: 59 DRGLAIFFP 67
>gi|386399435|ref|ZP_10084213.1| tRNA modification GTPase TrmE [Bradyrhizobium sp. WSM1253]
gi|385740061|gb|EIG60257.1| tRNA modification GTPase TrmE [Bradyrhizobium sp. WSM1253]
Length = 452
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 181/333 (54%), Gaps = 65/333 (19%)
Query: 103 VSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSF 162
++V+RVSGP AL ++A K+ PR AS R + D V + + D+ + LWFP P S
Sbjct: 20 LAVVRVSGPGASLALTTLAG----KLPAPRQASRRLLHDGVGQPI-DDSVVLWFPGPASA 74
Query: 163 TGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLI 222
TGED EF VHG AV+ A+ A++ +P +R AEPGEF++RAF N KLDLT+ E L DLI
Sbjct: 75 TGEDVAEFHVHGGRAVLAALFAAISVIPNMRAAEPGEFTQRAFENGKLDLTEAEGLDDLI 134
Query: 223 QAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQ 282
A+T+ QR++AL Q++G L +WR+ I+++ A +EA IDFS++ + ++
Sbjct: 135 HADTDRQRRQALRQLQGLLGNRARDWRERIIDASALIEAGIDFSDEGDVPAELMAPAVKA 194
Query: 283 VVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVV 342
+ LH DEI E V+
Sbjct: 195 ISALH--------------------------------------DEITE----------VL 206
Query: 343 QLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRD 402
G E+ +R G+ I GEPNVGKS+L+N L ++ ++IV+ GTTRD
Sbjct: 207 AAQGQAER-----------LRDGLVVAIAGEPNVGKSTLINQLARRDVAIVSPHAGTTRD 255
Query: 403 VIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
VIE LD+ GYPV ++DTAG+R T D +E EG
Sbjct: 256 VIEVQLDLDGYPVTVIDTAGIR-ETDDPVEQEG 287
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TIFALSSG ++V+RVSGP AL ++A K+P PR AS R + D V + +
Sbjct: 6 QTIFALSSGRPPSALAVVRVSGPGASLALTTLAG----KLPAPRQASRRLLHDGVGQPI- 60
Query: 88 DEGLCLWFP 96
D+ + LWFP
Sbjct: 61 DDSVVLWFP 69
>gi|421595657|ref|ZP_16039650.1| tRNA modification GTPase TrmE, partial [Bradyrhizobium sp.
CCGE-LA001]
gi|404272232|gb|EJZ35919.1| tRNA modification GTPase TrmE, partial [Bradyrhizobium sp.
CCGE-LA001]
Length = 358
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 126/335 (37%), Positives = 180/335 (53%), Gaps = 65/335 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
++V+RVSG + L +A K+S PR AS R + DP + + D+ + LWFP P
Sbjct: 18 SAIAVVRVSGQQAGDVLTRLAG----KLSAPRQASRRLLRDPAGQPI-DDAVVLWFPGPG 72
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
S TGED EF VHG AV+ ++ A++ +P R AEPGEF++RAF N KLDLT+ E L D
Sbjct: 73 SATGEDIAEFHVHGGRAVLASLFAAISVIPNTRAAEPGEFTQRAFENGKLDLTEAEGLDD 132
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI A+T+ QR++AL Q++G L +WR+ I+E+ A +EA IDFS++ + ++
Sbjct: 133 LIHADTDRQRRQALRQLQGLLGDRARDWRERIIEASALIEAGIDFSDEGDVPAELMAPAI 192
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
+ LH DEI E
Sbjct: 193 KAIKALH--------------------------------------DEIAE---------- 204
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
V+ G E+ +R G+ I GEPNVGKS+L+N L +++++IV+ GTT
Sbjct: 205 VLAAQGHSER-----------LRDGLVVAIAGEPNVGKSTLINQLARREVAIVSPYAGTT 253
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
RDVIE LD+ GYPV ++DTAG+R T D +E EG
Sbjct: 254 RDVIEVQLDLDGYPVTVIDTAGIR-ETDDPVEQEG 287
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TIFALSSG ++V+RVSG + L +A K+ PR AS R + DP + +
Sbjct: 6 QTIFALSSGRAPSAIAVVRVSGQQAGDVLTRLAG----KLSAPRQASRRLLRDPAGQPI- 60
Query: 88 DEGLCLWFPRHGKC 101
D+ + LWFP G
Sbjct: 61 DDAVVLWFPGPGSA 74
>gi|328865434|gb|EGG13820.1| GTP-binding protein 3 [Dictyostelium fasciculatum]
Length = 640
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 132/348 (37%), Positives = 187/348 (53%), Gaps = 68/348 (19%)
Query: 100 KCGVSVIRVSGPDTLNALKSMACYPD------QKVSKPRYASLRNIVDPVSEVVLDEGLC 153
K GV+VIRVSG + + L+ + + K PR A+L +I P ++ +D+ +
Sbjct: 107 KAGVAVIRVSGRSSNDVLQRLTMFSSISGDGGTKTIVPRMATLSSIHHPQTKEQIDKAML 166
Query: 154 LWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLT 213
LWFP+PNSFTGED E VHG AV++ L A+ +PG R A GEF++RAF NNK+DL+
Sbjct: 167 LWFPQPNSFTGEDVLELHVHGGRAVVHDTLDAIACVPGTRSAVAGEFTRRAFDNNKMDLS 226
Query: 214 QTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIED 273
+ E L DL+ A+T QR+ AL
Sbjct: 227 EVEGLSDLLDAQTNHQRRVAL--------------------------------------- 247
Query: 274 NILNTVRSQVVQLHGSIEKHI-ELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDN 332
+Q+ GS+ K L N+ IR+ A EA+IDF +D I+
Sbjct: 248 ----------LQMQGSLAKFTSHLRNRL---IRAS-------AYTEAFIDFGDDAEIDPA 287
Query: 333 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
++ T + + ++ +IE H+ + + G R+R G IVG PN GKSSL+N L Q++ SI
Sbjct: 288 VVETSKRAIREIKETIEGHLA-NGRIGERLREGASIAIVGPPNAGKSSLINILAQRRASI 346
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEK 440
V+SIPGTTRDV+E LDIGGYPV++ DTAG+R D IE EG ++ K
Sbjct: 347 VSSIPGTTRDVVEVVLDIGGYPVVIGDTAGIR-VGQDEIEQEGIVMAK 393
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 25/119 (21%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPD------QKVPKPRYASLRN 77
L K+TIFALSSG K GV+VIRVSG + + L+ + + K PR A+L +
Sbjct: 92 LKFKDTIFALSSGSNKAGVAVIRVSGRSSNDVLQRLTMFSSISGDGGTKTIVPRMATLSS 151
Query: 78 IVDPVSKVVLDEGLCLWFPR------------HGKCGVSVIRVSGPDTLNALKSMACYP 124
I P +K +D+ + LWFP+ H G +V+ DTL+A+ AC P
Sbjct: 152 IHHPQTKEQIDKAMLLWFPQPNSFTGEDVLELHVHGGRAVVH----DTLDAI---ACVP 203
>gi|414169347|ref|ZP_11425184.1| tRNA modification GTPase TrmE [Afipia clevelandensis ATCC 49720]
gi|410886106|gb|EKS33919.1| tRNA modification GTPase TrmE [Afipia clevelandensis ATCC 49720]
Length = 444
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 126/335 (37%), Positives = 178/335 (53%), Gaps = 65/335 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
++++RVSGP A++ + C K+ PR+A + D + +DE + LWFP P+
Sbjct: 18 SAIAILRVSGPQARMAVERL-C---GKLPSPRFARFTTLRD-LDGSAIDESVTLWFPGPH 72
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
S TGED EF VHG AVI A+ AL + GLRPAEPGEF++RAF N KLDLT+ E L D
Sbjct: 73 SATGEDVAEFHVHGGRAVIAAMFDALGAIDGLRPAEPGEFTRRAFENGKLDLTEAEGLDD 132
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI A+T+ QR++AL +KG L WRQ +IIE + L
Sbjct: 133 LIHADTDRQRRQALRHLKGLLGAKAETWRQ------------------QIIEASAL---- 170
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
+EA IDFS++ + + ++ +
Sbjct: 171 ------------------------------------IEAGIDFSDEGDVSEELIAPALKK 194
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
+ L IE+ + LS + R+R G+ I G PN GKS+L+N L +++ +IV+ GTT
Sbjct: 195 IAALKSEIEETLYLSAQS-ERLREGLTVAIAGPPNAGKSTLLNRLARREAAIVSPHAGTT 253
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
RDVIE HLD+ GYPV ++DTAG+R T D +E EG
Sbjct: 254 RDVIEVHLDLDGYPVTVIDTAGVR-ETHDPVEQEG 287
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TIFALSSG ++++RVSGP A++ + C K+P PR+A + D + +
Sbjct: 6 QTIFALSSGRAPSAIAILRVSGPQARMAVERL-C---GKLPSPRFARFTTLRD-LDGSAI 60
Query: 88 DEGLCLWFPR-HGKCGVSV 105
DE + LWFP H G V
Sbjct: 61 DESVTLWFPGPHSATGEDV 79
>gi|205422419|sp|Q2WBH0.2|MNME_MAGSA RecName: Full=tRNA modification GTPase MnmE
Length = 441
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 134/337 (39%), Positives = 180/337 (53%), Gaps = 66/337 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G++V R+SG + AL ++ P + +PR A + D EV LD+GL LWFP
Sbjct: 13 GRAGIAVWRLSGEGSGTALSALTGKP---LPEPRRARRVRLRDGAGEV-LDDGLVLWFPA 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E +HG AV A+ L +L GLRPAEPGEFS+RAF N KLDLT+ EA+
Sbjct: 69 PHSFTGEDVAELHLHGGRAVAAALTARLGEL-GLRPAEPGEFSRRAFLNGKLDLTRAEAI 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL+ AET QR++AL
Sbjct: 128 ADLVDAETAAQRRQALR------------------------------------------- 144
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
QL G + +E VR +A +EA IDF+ DE I D +L
Sbjct: 145 ------QLDGGLAGLVEGWRSALVR---------AMAHLEAVIDFA-DEDIPDTLLEQSV 188
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+V L +E H++ + G R+R GI I+G PN GKSSL+N L ++ +IV++ G
Sbjct: 189 GEVRSLRREMEVHLD-ERRNGERLRDGIHITILGAPNAGKSSLLNRLAGREAAIVSAQAG 247
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE HLD+GG+PVI+ DTAGLR + + IE+EG
Sbjct: 248 TTRDVIEVHLDLGGWPVIVADTAGLRDSACE-IESEG 283
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ TI+AL+S G+ G++V R+SG + AL ++ P +P+PR A + D +
Sbjct: 1 MSETIYALASAAGRAGIAVWRLSGEGSGTALSALTGKP---LPEPRRARRVRLRDGAGE- 56
Query: 86 VLDEGLCLWFP 96
VLD+GL LWFP
Sbjct: 57 VLDDGLVLWFP 67
>gi|325185944|emb|CCA20448.1| tRNA modification GTPase GTPBP3 putative [Albugo laibachii Nc14]
Length = 508
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 129/342 (37%), Positives = 185/342 (54%), Gaps = 67/342 (19%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ GV +IRVSGPD + +++ +Q PR A R + P+++ LD+ + L FP
Sbjct: 59 QGRAGVGIIRVSGPDATLCVHALSKQTNQSTIAPRIAEFRKLYHPITKEHLDDAVVLHFP 118
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
+P SFTGED EFQVHGS AVI+ +L AL+ +P R AEPGEF++RAF N K++L Q EA
Sbjct: 119 EPKSFTGEDVIEFQVHGSPAVISGVLQALSTVPRCRIAEPGEFTERAFENQKMNLMQVEA 178
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DL+ AETE Q
Sbjct: 179 LADLLSAETESQ------------------------------------------------ 190
Query: 278 TVRSQVV-QLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
RSQ + QL G I + +E+ K + + CLA EA IDF +DE D++ +
Sbjct: 191 --RSQALRQLSGRIGETLEIWQK---------ELIHCLAYTEAMIDFGDDE---DDVTDA 236
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVR---IRSGIKSVIVGEPNVGKSSLMNFLCQKQISIV 393
+++++ ++ H++ G R +R+GI+ I+G PN GKSSL+N L Q+ +IV
Sbjct: 237 SYTKMIERAKGLQSHMKKHLNDGRRGELLRNGIQVAIIGPPNAGKSSLLNHLAQRPAAIV 296
Query: 394 TSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
+SI GTTRD++ L++ GY VIL DTAG+R T D+IE G
Sbjct: 297 SSIAGTTRDIVRVPLNLKGYAVILCDTAGIR-ETDDLIEKVG 337
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFALS+ G+ GV +IRVSGPD + +++ +Q PR A R + P++K L
Sbjct: 50 DTIFALSTAQGRAGVGIIRVSGPDATLCVHALSKQTNQSTIAPRIAEFRKLYHPITKEHL 109
Query: 88 DEGLCLWFPR-HGKCGVSVI--RVSGPDTL--NALKSMACYPDQKVSKP 131
D+ + L FP G VI +V G + L++++ P ++++P
Sbjct: 110 DDAVVLHFPEPKSFTGEDVIEFQVHGSPAVISGVLQALSTVPRCRIAEP 158
>gi|433772249|ref|YP_007302716.1| small GTP-binding protein domain protein [Mesorhizobium australicum
WSM2073]
gi|433664264|gb|AGB43340.1| small GTP-binding protein domain protein [Mesorhizobium australicum
WSM2073]
Length = 442
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 125/330 (37%), Positives = 170/330 (51%), Gaps = 64/330 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+V+R+SGP T ++++ C + K R A LR P VLD GL L+FP P
Sbjct: 17 AGVAVVRISGPQTRFVVETIVC----GMVKARAAVLRRFRAP-DGTVLDNGLVLFFPGPA 71
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGED EF VHG AV+ ++ + G+R AEPGEF++RAFFN K+DL +TEAL D
Sbjct: 72 SFTGEDVAEFHVHGGRAVVARMVETIAGFEGVRHAEPGEFTRRAFFNGKVDLVETEALAD 131
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
L+ AETE QR+ A+ G LY WR+ ++ + A +EA IDF++++ + ++ +TV
Sbjct: 132 LVNAETEAQRRFAIQNAGGAQSALYLGWRRRLIHARAMIEAEIDFADEDDVPGSVSDTVW 191
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
S V + I++HI + F EII D
Sbjct: 192 SDVRSMISEIDRHI--------------------------VGFHAAEIIRD--------- 216
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
G + VI+G PN GKSSL N L Q+ +IVT PGTT
Sbjct: 217 ------------------------GFEVVILGAPNAGKSSLFNALAQRDAAIVTDEPGTT 252
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
RD++E LD+ G V L DTAGLR I
Sbjct: 253 RDLLEVVLDLRGLRVRLTDTAGLREAPGKI 282
>gi|377834690|ref|XP_003689534.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
isoform 2 [Mus musculus]
Length = 471
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 131/338 (38%), Positives = 177/338 (52%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+C ++VIR SGP + AL+S+ Q+ R A LR + P S LD L LWFP
Sbjct: 43 QGRCAIAVIRTSGPASGLALRSLTAL--QEPPPARRACLRLLRHPCSGEPLDRSLVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF + KL LT+ E
Sbjct: 101 GPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLSLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI+AETE QR++AL Q+ G L QL W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIRAETEAQRRQALRQLDGELSQLCQGWAKTLTKALAYVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+V L ++ H+ + + G R+ SG V+ N
Sbjct: 221 QADREVRALEVALGSHLRDARR-GQRLLSGANVVV------------------TGPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K S++ EP
Sbjct: 262 KSSLVNL---------LSQK--------PVSIVSPEP----------------------- 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPVLLSDTAGLREGVG-AVEQEG 318
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 13 AVIFFSRRCS----HLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVP 68
A + RCS L +TIFALSSG G+C ++VIR SGP + AL+S+ Q+ P
Sbjct: 15 APLRLCARCSTSAESLVPSSTIFALSSGQGRCAIAVIRTSGPASGLALRSLTAL--QEPP 72
Query: 69 KPRYASLRNIVDPVSKVVLDEGLCLWFP 96
R A LR + P S LD L LWFP
Sbjct: 73 PARRACLRLLRHPCSGEPLDRSLVLWFP 100
>gi|58696937|ref|ZP_00372434.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Drosophila
simulans]
gi|58536832|gb|EAL60048.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Drosophila
simulans]
Length = 414
Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 130/320 (40%), Positives = 182/320 (56%), Gaps = 63/320 (19%)
Query: 116 ALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGS 175
ALK++ + +K KPR+A+L ++ D S+++ D G+ ++FP PNSFTGED E QVHGS
Sbjct: 2 ALKALNHFHIKKEIKPRFATLVDLYDDSSQLI-DNGIIIYFPAPNSFTGEDVIELQVHGS 60
Query: 176 IAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALH 235
AVI IL L+K+ + A+PGEFS RAF N K DLTQ E + DLI AET++Q ++A+
Sbjct: 61 KAVIKIILEELSKVFVM--AKPGEFSLRAFLNGKFDLTQIEGIADLIDAETKMQAKQAI- 117
Query: 236 QMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIE 295
KQ+ E LE L S R +++ +
Sbjct: 118 ------KQISGE-----LERLYS-------------------NWRQRLITIQ-------- 139
Query: 296 LSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELS 355
+ +EAYIDF ED E + L + ++V L I++H+
Sbjct: 140 -------------------SKIEAYIDFPEDIWAEKSELEKINNEVQSLVRLIQEHLN-D 179
Query: 356 NKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPV 415
N+ G R+R G+ VI GEPNVGKS+L NFL ++ I+IV+ GTTRD++E H+DIGGYP+
Sbjct: 180 NRRGERLREGLHIVITGEPNVGKSTLFNFLAKRDIAIVSEYAGTTRDILEAHIDIGGYPI 239
Query: 416 ILLDTAGLRTTTSDIIETEG 435
IL DTAG+R +SD IE EG
Sbjct: 240 ILSDTAGIR-ESSDPIELEG 258
>gi|307215187|gb|EFN89959.1| tRNA modification GTPase GTPBP3, mitochondrial [Harpegnathos
saltator]
Length = 435
Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 174/306 (56%), Gaps = 60/306 (19%)
Query: 130 KPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL 189
+PR A LR I DP + V+D GLCLWFP P+SFTGED EF VHG A+++ ++ L+KL
Sbjct: 8 EPRKAFLRKIRDPETGEVIDHGLCLWFPGPHSFTGEDSVEFHVHGGPAILSRLMQTLSKL 67
Query: 190 PGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWR 249
+ PA+PGEF++RAF+NNKLDLT+ E L DLI+AETE QR++AL Q G L++LY WR
Sbjct: 68 Q-VYPAQPGEFTRRAFYNNKLDLTEVEGLADLIEAETECQRKQALLQADGLLRKLYDNWR 126
Query: 250 QLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK 309
+++ E +AS+EAYIDF ED+ IE +++ + +L +E+H+ K G +R+G++
Sbjct: 127 KVLSEGVASIEAYIDFGEDDNIESDVVERTHGTLKKLISDMEEHLADGRK-GEILRNGVR 185
Query: 310 SVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSV 369
+VI E + + ++LN +VQ ++
Sbjct: 186 TVIV----------GEPNVGKSSLLN----HLVQ-----------------------RNA 208
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
++ P G TTRDVIE +I GYPV++ DTAG+ T D
Sbjct: 209 VIVTPIAG---------------------TTRDVIELSANISGYPVLIADTAGITDHTDD 247
Query: 430 IIETEG 435
I+E EG
Sbjct: 248 IVEAEG 253
>gi|33414589|ref|NP_115933.2| tRNA modification GTPase GTPBP3, mitochondrial precursor [Mus
musculus]
gi|377834688|ref|XP_003689533.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like
isoform 1 [Mus musculus]
gi|81867616|sp|Q923K4.1|GTPB3_MOUSE RecName: Full=tRNA modification GTPase GTPBP3, mitochondrial;
AltName: Full=GTP-binding protein 3; Flags: Precursor
gi|60729690|pir||JC8039 mitochondrial GTP-binding protein GTPBP3 - mouse
gi|14388168|gb|AAK60410.1| GTP binding protein 3 [Mus musculus]
gi|33303614|gb|AAK35216.2| mitochondrial GTP-binding protein 1 [Mus musculus]
gi|148668861|gb|EDL01029.1| GTP binding protein 3, isoform CRA_a [Mus musculus]
gi|187951095|gb|AAI38561.1| GTP binding protein 3 [Mus musculus]
Length = 492
Score = 211 bits (536), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 131/338 (38%), Positives = 177/338 (52%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+C ++VIR SGP + AL+S+ Q+ R A LR + P S LD L LWFP
Sbjct: 43 QGRCAIAVIRTSGPASGLALRSLTAL--QEPPPARRACLRLLRHPCSGEPLDRSLVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF + KL LT+ E
Sbjct: 101 GPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLSLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI+AETE QR++AL Q+ G L QL W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIRAETEAQRRQALRQLDGELSQLCQGWAKTLTKALAYVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+V L ++ H+ + + G R+ SG V+ N
Sbjct: 221 QADREVRALEVALGSHLRDARR-GQRLLSGANVVV------------------TGPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K S++ EP
Sbjct: 262 KSSLVNL---------LSQK--------PVSIVSPEP----------------------- 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPVLLSDTAGLREGVG-AVEQEG 318
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Query: 20 RCS----HLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASL 75
RCS L +TIFALSSG G+C ++VIR SGP + AL+S+ Q+ P R A L
Sbjct: 22 RCSTSAESLVPSSTIFALSSGQGRCAIAVIRTSGPASGLALRSLTAL--QEPPPARRACL 79
Query: 76 RNIVDPVSKVVLDEGLCLWFP 96
R + P S LD L LWFP
Sbjct: 80 RLLRHPCSGEPLDRSLVLWFP 100
>gi|58865408|ref|NP_001011919.1| tRNA modification GTPase GTPBP3, mitochondrial precursor [Rattus
norvegicus]
gi|81883253|sp|Q5PQQ1.1|GTPB3_RAT RecName: Full=tRNA modification GTPase GTPBP3, mitochondrial;
AltName: Full=GTP-binding protein 3; Flags: Precursor
gi|56268874|gb|AAH87083.1| GTP binding protein 3 (mitochondrial) [Rattus norvegicus]
Length = 492
Score = 210 bits (535), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 129/338 (38%), Positives = 177/338 (52%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+C ++VIR SGP + AL+S+ ++ R A LR + P S LD L LWFP
Sbjct: 43 QGRCAIAVIRTSGPASGLALRSLTAL--REPPPARSACLRLLRHPCSGEPLDRSLVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC E VHG AV++ +L AL +PGLRPA+ GEF++RAF + KL LT+ E
Sbjct: 101 GPQSFTGEDCMELHVHGGPAVVSGVLQALGSVPGLRPAKAGEFTRRAFAHGKLSLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L QL W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELSQLCQGWAKTLTKALAHVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
V V L ++ H+ + + G R+RSG V+ N
Sbjct: 221 QVDRDVRALEVALSSHLRDARR-GQRLRSGANVVVA------------------GPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K S++ EP
Sbjct: 262 KSSLVNL---------LSQK--------PVSIVSPEP----------------------- 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRD++E +D+ G+PV+L DTAGLR + +E EG
Sbjct: 282 GTTRDILETPVDLAGFPVLLSDTAGLR-EGAGAVEQEG 318
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Query: 20 RCS----HLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASL 75
RCS L +TIFALSSG G+C ++VIR SGP + AL+S+ ++ P R A L
Sbjct: 22 RCSTGAESLVPGSTIFALSSGQGRCAIAVIRTSGPASGLALRSLTAL--REPPPARSACL 79
Query: 76 RNIVDPVSKVVLDEGLCLWFP 96
R + P S LD L LWFP
Sbjct: 80 RLLRHPCSGEPLDRSLVLWFP 100
>gi|300176248|emb|CBK23559.2| unnamed protein product [Blastocystis hominis]
Length = 492
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/341 (38%), Positives = 184/341 (53%), Gaps = 70/341 (20%)
Query: 100 KCGVSVIRVSGPDTLNALKSMAC----YPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLW 155
K GV+VIRVSG + +A+K M +P PR ASLR+I+D ++ V+D+GL +
Sbjct: 14 KSGVAVIRVSGSNAFDAIKQMTSEQCSFP-----TPRQASLRSILDSQTKEVIDKGLVMH 68
Query: 156 -FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
FP SFT ED EF VHGS AV+NA L +L+ +P R AEPGEF+KRAF N K+ +
Sbjct: 69 RFPLSLSFTDEDVVEFHVHGSPAVVNATLRSLSHIPYFRVAEPGEFTKRAFLNGKMSFLE 128
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
EAL DL+ AETE QRQ+A+H + G L L +WR ++ SLA E ++F++D E
Sbjct: 129 VEALADLLNAETETQRQQAIHGLSGELSALCWKWRSQLMHSLAHAETILEFADDMDEESV 188
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
+L Q+ + S+++ + G R
Sbjct: 189 LLADATRQLGSIRDSMQQLLR-----GFR------------------------------- 212
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
RSQ+V + GI+ + G PNVGKSSL+N L + +IV+
Sbjct: 213 ---RSQLV--------------------KEGIRVTLFGPPNVGKSSLLNVLTGSEEAIVS 249
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
+IPGTTRDV++ LD+ G+ VIL DTAGL + +++E EG
Sbjct: 250 AIPGTTRDVLKVDLDLEGWKVILQDTAGLH-DSEEVVEREG 289
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 7/99 (7%)
Query: 39 KCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLW-FP- 96
K GV+VIRVSG + +A+K M P PR ASLR+I+D +K V+D+GL + FP
Sbjct: 14 KSGVAVIRVSGSNAFDAIKQMTS-EQCSFPTPRQASLRSILDSQTKEVIDKGLVMHRFPL 72
Query: 97 --RHGKCGVSVIRVSG-PDTLNA-LKSMACYPDQKVSKP 131
V V G P +NA L+S++ P +V++P
Sbjct: 73 SLSFTDEDVVEFHVHGSPAVVNATLRSLSHIPYFRVAEP 111
>gi|88608741|ref|YP_506593.1| tRNA modification GTPase TrmE [Neorickettsia sennetsu str.
Miyayama]
gi|123763699|sp|Q2GD53.1|MNME_NEOSM RecName: Full=tRNA modification GTPase MnmE
gi|88600910|gb|ABD46378.1| tRNA modification GTPase TrmE [Neorickettsia sennetsu str.
Miyayama]
Length = 550
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 124/337 (36%), Positives = 184/337 (54%), Gaps = 67/337 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGPD L AL+ + D K +PR+ + D ++++DE L ++F
Sbjct: 12 GKSGVAVFRISGPDALRALELLGL--DIKQPRPRFVYFARLFD--EQLLIDEVLVVYFAS 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E HGSIAV+ I L+ L +PAEPGEF++RA NN++DLT+ E +
Sbjct: 68 PASFTGEDVVELHSHGSIAVLRYISEKLSTL--FKPAEPGEFTRRAVLNNRMDLTKAEGI 125
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I +ET+ Q ++A + G L + Y N+
Sbjct: 126 IDIINSETQEQLKQASRHLSGKLAEEY-------------------------------NS 154
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+R +++++ L+ +EAYIDF ++EI E +L ++
Sbjct: 155 LRDKIIKV---------------------------LSYLEAYIDFPDEEIPE-TVLAEIQ 186
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+V + I +++ K G +IR G VIVG+PNVGKS+L N+L ++ ++IVT IPG
Sbjct: 187 QSIVAIQCDISRYLA-DGKVGEKIREGFSVVIVGKPNVGKSTLFNYLAKRDLAIVTDIPG 245
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD++E LD GYPVIL DTAG++ T D IE G
Sbjct: 246 TTRDILEVRLDCHGYPVILSDTAGIQETC-DAIEKMG 281
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 131/286 (45%), Gaps = 69/286 (24%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI+ALS+ GK GV+V R+SGPD L AL+ + D K P+PR+ + D ++++
Sbjct: 2 STIYALSTVFGKSGVAVFRISGPDALRALELLGL--DIKQPRPRFVYFARLFD--EQLLI 57
Query: 88 DEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVV 147
DE L ++F + P + + + ++ RY S
Sbjct: 58 DEVLVVYF-------------ASPASFTGEDVVELHSHGSIAVLRYIS------------ 92
Query: 148 LDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFN 207
E L F KP PG EF++RA N
Sbjct: 93 --EKLSTLF-KPAE----------------------------PG-------EFTRRAVLN 114
Query: 208 NKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSE 267
N++DLT+ E + D+I +ET+ Q ++A + G L + Y+ R I++ L+ +EAYIDF +
Sbjct: 115 NRMDLTKAEGIIDIINSETQEQLKQASRHLSGKLAEEYNSLRDKIIKVLSYLEAYIDFPD 174
Query: 268 DEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
+EI E +L ++ +V + I +++ K G +IR G VI
Sbjct: 175 EEIPE-TVLAEIQQSIVAIQCDISRYLA-DGKVGEKIREGFSVVIV 218
>gi|399088795|ref|ZP_10753622.1| tRNA modification GTPase TrmE [Caulobacter sp. AP07]
gi|398030243|gb|EJL23665.1| tRNA modification GTPase TrmE [Caulobacter sp. AP07]
Length = 447
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 128/337 (37%), Positives = 174/337 (51%), Gaps = 68/337 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ V+V+R+SGP +A++++A + PR A+LR + V LD+ L LWF
Sbjct: 13 GRAAVAVLRISGPRASDAVRALAG----DLPTPRRAALRQLTH--DGVALDDALVLWFEG 66
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P S+TGED EF VHG AV+ A+L AL GLR AEPGEF++RAF N KLDLTQ E +
Sbjct: 67 PASYTGEDAAEFHVHGGRAVVEAVLEALAA-EGLRLAEPGEFTRRAFENGKLDLTQAEGV 125
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET+ QR
Sbjct: 126 ADLIDAETQAQR------------------------------------------------ 137
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R + QL G++ + E V+ LA +EA +DF DE + +++ R
Sbjct: 138 -RQALGQLGGALSERYEAWRGLLVQ---------ALAMLEAAVDFP-DEALPEDVAARAR 186
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+V L I + + + G R+R G + +VG PN GKS+L+N L ++ +IVTS PG
Sbjct: 187 PGLVALEAEIGEAL-VDAARGRRVRDGFRVALVGAPNAGKSTLLNGLAERDAAIVTSTPG 245
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE L +GGY V+L DTAGLR T D IE EG
Sbjct: 246 TTRDIIEVPLTLGGYKVLLADTAGLR-ATEDTIEAEG 281
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 137/288 (47%), Gaps = 70/288 (24%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ +TI+A ++G G+ V+V+R+SGP +A++++A +P PR A+LR + V
Sbjct: 1 MNDTIYAPATGAGRAAVAVLRISGPRASDAVRALAG----DLPTPRRAALRQLTH--DGV 54
Query: 86 VLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSE 145
LD+ L LWF GP A Y + ++ R +V+ V E
Sbjct: 55 ALDDALVLWF-------------EGP---------ASYTGEDAAEFHVHGGRAVVEAVLE 92
Query: 146 VVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAF 205
+ EGL R AEPGEF++RAF
Sbjct: 93 ALAAEGL----------------------------------------RLAEPGEFTRRAF 112
Query: 206 FNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDF 265
N KLDLTQ E + DLI AET+ QR++AL Q+ G L + Y WR L++++LA +EA +DF
Sbjct: 113 ENGKLDLTQAEGVADLIDAETQAQRRQALGQLGGALSERYEAWRGLLVQALAMLEAAVDF 172
Query: 266 SEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
DE + +++ R +V L I + + + G R+R G + +
Sbjct: 173 P-DEALPEDVAARARPGLVALEAEIGEAL-VDAARGRRVRDGFRVALV 218
>gi|91762518|ref|ZP_01264483.1| tRNA modification GTPase [Candidatus Pelagibacter ubique HTCC1002]
gi|91718320|gb|EAS84970.1| tRNA modification GTPase [Candidatus Pelagibacter ubique HTCC1002]
Length = 443
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 124/332 (37%), Positives = 188/332 (56%), Gaps = 63/332 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G G++++RVSG DT +K + + ++ KPR A+LR I + ++DEG+ LWFP
Sbjct: 11 GISGIAIVRVSGEDTKKIIKLLT---NAELPKPRVATLRKINKINTSELIDEGIILWFPG 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P S+TGED EF +HGS AVI+A+ +++K+ R A+PGEF+K AF N K++L + E++
Sbjct: 68 PESYTGEDMAEFHIHGSKAVIDALHHSISKIENCRLADPGEFTKLAFQNGKINLLKAESI 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AETE+QRQ+A+ M GN S D+ N
Sbjct: 128 ADLISAETEIQRQQAIKIMNGN-------------------------SADK------FNE 156
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+R +++++ L+ VEA IDF ++++ ED IL ++
Sbjct: 157 LREKLLKI---------------------------LSHVEAKIDFPDEDLSED-ILKNIK 188
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ +I+K ++ K G RIR G K I+G N GKSSL+N L + +IV+ I G
Sbjct: 189 KISNEVILNIKKILD-DQKVGERIREGFKIAIIGPTNAGKSSLLNHLSNRDAAIVSEIAG 247
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDVIE HL+I GYPV++ DTAG+R + ++I
Sbjct: 248 TTRDVIEIHLNIDGYPVVVSDTAGIRDSKNEI 279
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 174/339 (51%), Gaps = 73/339 (21%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TI+ALS+G G G++++RVSG DT +K + + ++PKPR A+LR I + ++D
Sbjct: 2 TIYALSTGPGISGIAIVRVSGEDTKKIIKLLT---NAELPKPRVATLRKINKINTSELID 58
Query: 89 EGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVL 148
EG+ LWFP GP++ + MA +
Sbjct: 59 EGIILWFP-------------GPESYTG-EDMAEF------------------------- 79
Query: 149 DEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNN 208
+HGS AVI+A+ +++K+ R A+PGEF+K AF N
Sbjct: 80 ----------------------HIHGSKAVIDALHHSISKIENCRLADPGEFTKLAFQNG 117
Query: 209 KLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSED 268
K++L + E++ DLI AETE+QRQ+A+ M GN ++E R+ +L+ L+ VEA IDF ++
Sbjct: 118 KINLLKAESIADLISAETEIQRQQAIKIMNGNSADKFNELREKLLKILSHVEAKIDFPDE 177
Query: 269 EIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI---CLASVEAYIDF-- 323
++ ED IL ++ ++ +I+K ++ K G RIR G K I A + ++
Sbjct: 178 DLSED-ILKNIKKISNEVILNIKKILD-DQKVGERIREGFKIAIIGPTNAGKSSLLNHLS 235
Query: 324 SEDEIIEDNILNTVRSQVVQLHGSIEKH-IELSNKCGVR 361
+ D I I T R V+++H +I+ + + +S+ G+R
Sbjct: 236 NRDAAIVSEIAGTTR-DVIEIHLNIDGYPVVVSDTAGIR 273
>gi|338972503|ref|ZP_08627876.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Bradyrhizobiaceae
bacterium SG-6C]
gi|338234288|gb|EGP09405.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Bradyrhizobiaceae
bacterium SG-6C]
Length = 444
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 125/335 (37%), Positives = 177/335 (52%), Gaps = 65/335 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
++++RVSGP A++ + C K+ PR A + D + +DE + LWFP P+
Sbjct: 18 SAIAILRVSGPQARMAVERL-C---GKLPSPRLARFTTLRD-LDGSAIDESVTLWFPGPH 72
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
S T ED EF VHG AVI A+L AL + GLRPAEPGEF++RAF N KLDLT+ E L D
Sbjct: 73 SATAEDVAEFHVHGGRAVIAAMLDALGAINGLRPAEPGEFTRRAFENGKLDLTEAEGLDD 132
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI A+T+ QR++AL +KG L WRQ +IIE + L
Sbjct: 133 LIHADTDRQRRQALRHLKGLLGAKAETWRQ------------------QIIEASAL---- 170
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
+EA IDFS++ + + ++ +
Sbjct: 171 ------------------------------------IEAGIDFSDEGDVSEELVAPALKK 194
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
+ L IE+ + +S+ R+R G+ I G PN GKS+L+N L +++ +IV+ GTT
Sbjct: 195 IAALKSEIEETL-ISSAQSERLREGLTVAIAGPPNAGKSTLLNRLARREAAIVSPHAGTT 253
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
RDVIE HLD+ GYPV ++DTAG+R T D +E EG
Sbjct: 254 RDVIEVHLDLDGYPVTVIDTAGVR-ETHDPVEQEG 287
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 128/286 (44%), Gaps = 67/286 (23%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TIFALSSG ++++RVSGP A++ + C K+P PR A + D + +
Sbjct: 6 QTIFALSSGRAPSAIAILRVSGPQARMAVERL-C---GKLPSPRLARFTTLRD-LDGSAI 60
Query: 88 DEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVV 147
DE + LWFP GP + A + V+E
Sbjct: 61 DESVTLWFP-------------GPHSATA------------------------EDVAEFH 83
Query: 148 LDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFN 207
+ G + + + + AI G PG EF++RAF N
Sbjct: 84 VHGGRAV-----------------IAAMLDALGAINGLRPAEPG-------EFTRRAFEN 119
Query: 208 NKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSE 267
KLDLT+ E L DLI A+T+ QR++AL +KG L WRQ I+E+ A +EA IDFS+
Sbjct: 120 GKLDLTEAEGLDDLIHADTDRQRRQALRHLKGLLGAKAETWRQQIIEASALIEAGIDFSD 179
Query: 268 DEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
+ + + ++ ++ L IE+ + +S+ R+R G+ I
Sbjct: 180 EGDVSEELVAPALKKIAALKSEIEETL-ISSAQSERLREGLTVAIA 224
>gi|254797067|ref|YP_003081905.1| tRNA modification GTPase TrmE [Neorickettsia risticii str.
Illinois]
gi|254590313|gb|ACT69675.1| tRNA modification GTPase TrmE [Neorickettsia risticii str.
Illinois]
Length = 550
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 182/337 (54%), Gaps = 67/337 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGPD L ALK + D K +PR+A + D ++++DE L ++F
Sbjct: 12 GKSGVAVFRISGPDALQALKVLGL--DIKRPRPRFAYFTRLFD--EQLLIDEVLVIYFAS 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E HGSIAV+ I L+ L +PAEPGEF++RA NN++DLT+ E +
Sbjct: 68 PASFTGEDVVEVHSHGSIAVLRYISEKLSTL--FKPAEPGEFTRRAVLNNRMDLTKAEGI 125
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I AET Q ++A + G L + Y ++
Sbjct: 126 IDIINAETREQLKQASRHLSGKLAEGY-------------------------------HS 154
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+RS+++++ L+ +EAYIDF ++EI E +L ++
Sbjct: 155 LRSKIIKV---------------------------LSYLEAYIDFPDEEIPE-TVLVEIQ 186
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ + I H K G +IR G VIVG+PN GKS+L N+L ++ ++IVT IPG
Sbjct: 187 QSILAIQRDI-SHYLADGKVGEKIREGFSVVIVGKPNAGKSTLFNYLAKRDLAIVTDIPG 245
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD++E LD GYP+IL DTAG++ T D IE G
Sbjct: 246 TTRDILEVRLDCHGYPLILSDTAGIQETC-DAIEKMG 281
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 128/286 (44%), Gaps = 69/286 (24%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI+ALS+ GK GV+V R+SGPD L ALK + D K P+PR+A + D ++++
Sbjct: 2 STIYALSTVFGKSGVAVFRISGPDALQALKVLGL--DIKRPRPRFAYFTRLFD--EQLLI 57
Query: 88 DEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVV 147
DE L ++F + P + + + ++ RY S
Sbjct: 58 DEVLVIYF-------------ASPASFTGEDVVEVHSHGSIAVLRYIS------------ 92
Query: 148 LDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFN 207
E L F KP PG EF++RA N
Sbjct: 93 --EKLSTLF-KPAE----------------------------PG-------EFTRRAVLN 114
Query: 208 NKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSE 267
N++DLT+ E + D+I AET Q ++A + G L + Y R I++ L+ +EAYIDF +
Sbjct: 115 NRMDLTKAEGIIDIINAETREQLKQASRHLSGKLAEGYHSLRSKIIKVLSYLEAYIDFPD 174
Query: 268 DEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
+EI E +L ++ ++ + I H K G +IR G VI
Sbjct: 175 EEIPE-TVLVEIQQSILAIQRDI-SHYLADGKVGEKIREGFSVVIV 218
>gi|395750694|ref|XP_003779140.1| PREDICTED: LOW QUALITY PROTEIN: tRNA modification GTPase GTPBP3,
mitochondrial [Pongo abelii]
Length = 492
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 129/338 (38%), Positives = 177/338 (52%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CG++VIR G + +AL+ + D + R+AS+R + DP LD L LW P
Sbjct: 43 QGRCGIAVIRTXGSASGHALRILTAPRDCPXA--RHASVRLLRDPRXGEPLDRALVLWSP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E
Sbjct: 101 GPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+V L ++ H+ + + G R+RSG V+ N
Sbjct: 221 QADIEVRALEVALGAHLRDARR-GQRLRSGAHVVVT------------------GPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K S++ EP
Sbjct: 262 KSSLVNL---------LSRK--------PVSIVSPEP----------------------- 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 318
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR G + +AL+ + D P R+AS+R + DP LD
Sbjct: 35 TIFALSSGQGRCGIAVIRTXGSASGHALRILTAPRD--CPXARHASVRLLRDPRXGEPLD 92
Query: 89 EGLCLWFP 96
L LW P
Sbjct: 93 RALVLWSP 100
>gi|90421815|ref|YP_530185.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris BisB18]
gi|122477629|sp|Q21CM0.1|MNME_RHOPB RecName: Full=tRNA modification GTPase MnmE
gi|90103829|gb|ABD85866.1| tRNA modification GTPase trmE [Rhodopseudomonas palustris BisB18]
Length = 449
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 123/335 (36%), Positives = 181/335 (54%), Gaps = 65/335 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
++++RVSGP+ L+ +A ++ PR A +R ++ S +D+ + LWFP P
Sbjct: 18 AALAIVRVSGPEAAIVLERIAG----RLPPPRQA-MRALLHDASAQPIDDAIVLWFPAPR 72
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
S TGED EF +HG AV++A++ A+ LR AEPGEF++RAF N KLDLT+ E L D
Sbjct: 73 SATGEDVAEFHIHGGRAVLSAVIAAIGTNENLRAAEPGEFTRRAFENGKLDLTEAEGLDD 132
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI A+TE QR++AL Q++G L +WR I+ + A VEA IDF+++ + D +
Sbjct: 133 LIHADTERQRRQALRQLQGLLGDRARDWRGEIIAASALVEAAIDFADEGDVPDEL----- 187
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
+A +A I+ DE IED + RS+
Sbjct: 188 ---------------------------------IAPAKAKIEILLDE-IEDVLAQEGRSE 213
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
++R G+ I G PNVGKS+LMN L +++++IV+ GTT
Sbjct: 214 --------------------KLRDGLVVAITGPPNVGKSTLMNQLARREVAIVSPHAGTT 253
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
RD+IE HLD+ GYPV ++DTAG+R D +E EG
Sbjct: 254 RDIIEVHLDLDGYPVTVIDTAGIREAI-DPVEQEG 287
>gi|307943442|ref|ZP_07658786.1| tRNA modification GTPase TrmE [Roseibium sp. TrichSKD4]
gi|307773072|gb|EFO32289.1| tRNA modification GTPase TrmE [Roseibium sp. TrichSKD4]
Length = 453
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 132/334 (39%), Positives = 175/334 (52%), Gaps = 65/334 (19%)
Query: 102 GVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNS 161
GV+VIRVSGP+T ++S+ V R AS+R + D LDE L L+F P S
Sbjct: 22 GVAVIRVSGPETQAVVRSLCG----DVPPVRKASVRVLRDGEG-TALDEALVLYFEGPAS 76
Query: 162 FTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDL 221
FTGED E HG AV+ A+L L G RPAEPGEF++RAF +LDLT+ E L DL
Sbjct: 77 FTGEDVAELHCHGGRAVVAAVLNTLAGFQGCRPAEPGEFTRRAFEKGRLDLTEVEGLSDL 136
Query: 222 IQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRS 281
I AETE QR R
Sbjct: 137 IAAETEQQR-------------------------------------------------RQ 147
Query: 282 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQV 341
+ Q+ G++ E K + +R A +EA DF+++E + ++ + V ++
Sbjct: 148 ALRQMGGALGALYEDWRKRLIHMR---------ALIEADFDFADEEDVPGSVADEVWAEA 198
Query: 342 VQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTR 401
QL I H+E S K G R+RSG++ V++G PN GKSSL+N L + ++IVT GTTR
Sbjct: 199 DQLARDIAGHLETS-KSGERLRSGLQVVLMGAPNAGKSSLLNALAGRDVAIVTEEAGTTR 257
Query: 402 DVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
DVIE HLD+GGYPV L+DTAGLR T I+E EG
Sbjct: 258 DVIEVHLDLGGYPVTLIDTAGLRQTDG-IVEREG 290
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 142/290 (48%), Gaps = 67/290 (23%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ +TI+ALSSG GV+VIRVSGP+T ++S+ VP R AS+R + D
Sbjct: 7 MTDTIYALSSGVVPSGVAVIRVSGPETQAVVRSLCG----DVPPVRKASVRVLRDG-EGT 61
Query: 86 VLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSE 145
LDE L L+F GP A + + V++ R +V V
Sbjct: 62 ALDEALVLYF-------------EGP---------ASFTGEDVAELHCHGGRAVVAAVL- 98
Query: 146 VVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAF 205
N+ G FQ G RPAEPGEF++RAF
Sbjct: 99 --------------NTLAG-----FQ-------------------GCRPAEPGEFTRRAF 120
Query: 206 FNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDF 265
+LDLT+ E L DLI AETE QR++AL QM G L LY +WR+ ++ A +EA DF
Sbjct: 121 EKGRLDLTEVEGLSDLIAAETEQQRRQALRQMGGALGALYEDWRKRLIHMRALIEADFDF 180
Query: 266 SEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA 315
+++E + ++ + V ++ QL I H+E S K G R+RSG++ V+ A
Sbjct: 181 ADEEDVPGSVADEVWAEADQLARDIAGHLETS-KSGERLRSGLQVVLMGA 229
>gi|418053651|ref|ZP_12691707.1| tRNA modification GTPase mnmE [Hyphomicrobium denitrificans 1NES1]
gi|353211276|gb|EHB76676.1| tRNA modification GTPase mnmE [Hyphomicrobium denitrificans 1NES1]
Length = 452
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 130/337 (38%), Positives = 171/337 (50%), Gaps = 64/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ +SVIR+SGP + L+ M + KPR A+ R I P + LD L LWF
Sbjct: 30 GRAALSVIRISGPAVRDVLEKMVA----PIPKPRVAAFRTIRHPETREALDRALLLWFAA 85
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNS TGED EFQ HGS A I AIL AL + G R AEPGEF++R F N K+DL + E L
Sbjct: 86 PNSETGEDVAEFQGHGSRAAIAAILAALGTMKGCRLAEPGEFARRGFENGKMDLAEIEGL 145
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
GDLI+AETE QR++AL Q G L +LY WR ++E A EA IDFS++ + +
Sbjct: 146 GDLIEAETEAQRRQALAQSAGMLSKLYEGWRTRLIEIAALTEAAIDFSDEADVSASSFME 205
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R + L I H++ D EI+ D
Sbjct: 206 ARKRAEALSAEIGAHLD--------------------------DGHRGEIVRD------- 232
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
G R+ ++G PN GKSSL+N L ++ +IV++ G
Sbjct: 233 --------------------GFRV------ALLGPPNAGKSSLLNALARRDAAIVSAEAG 266
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE LD+ G PV++ DTAG+R S +E EG
Sbjct: 267 TTRDVIEVRLDLAGLPVVISDTAGIREAGS-AVEQEG 302
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSS G+ +SVIR+SGP + L+ M +PKPR A+ R I P ++ LD
Sbjct: 21 TIFALSSAPGRAALSVIRISGPAVRDVLEKMVA----PIPKPRVAAFRTIRHPETREALD 76
Query: 89 EGLCLWF 95
L LWF
Sbjct: 77 RALLLWF 83
>gi|380091592|emb|CCC10723.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 613
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 138/406 (33%), Positives = 199/406 (49%), Gaps = 113/406 (27%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI+ALSSG G+ G++VIRVSGP L+ S+ C P + VPKPRYA++R + +P +
Sbjct: 74 DTIYALSSGSGRAGIAVIRVSGPGCLDVYNSL-C-PTKPVPKPRYAAVRTLTEPTA---- 127
Query: 88 DEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVV 147
P ++VS A+ N++D
Sbjct: 128 ------------------------------------PGKEVSS---AANANVLD------ 142
Query: 148 LDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG-----LRPAEPGEFSK 202
+ L L+FP P + TGED E VHG A + A+L A+ K +R AE GEF+K
Sbjct: 143 -TDALVLYFPGPKTVTGEDILELHVHGGSATVKAVLSAIPKSESTSSGTIRYAEQGEFTK 201
Query: 203 RAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAY 262
RAF NN++DL Q EALGD + AETE QR+ A+ G L + Y WR+ +L + +EA
Sbjct: 202 RAFLNNRIDLAQVEALGDTLSAETEQQRRAAIRGTSGVLGKTYESWREQLLLARGEIEAL 261
Query: 263 IDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYID 322
IDFSED+ +++ +R+ V L I + I+L
Sbjct: 262 IDFSEDQHFDESPTELLRN-VTHLVKGILRSIKLHE------------------------ 296
Query: 323 FSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLM 382
+ + RS+++ + G+RI ++G PNVGKSSLM
Sbjct: 297 -----------MGSQRSELL--------------RNGIRI------ALLGPPNVGKSSLM 325
Query: 383 NFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428
N + ++ SIV+S GTTRD++E LDI GY DTAG+RT +S
Sbjct: 326 NLIVGREASIVSSEAGTTRDIVEASLDIRGYLCSFADTAGIRTRSS 371
>gi|323135828|ref|ZP_08070911.1| tRNA modification GTPase TrmE [Methylocystis sp. ATCC 49242]
gi|322398919|gb|EFY01438.1| tRNA modification GTPase TrmE [Methylocystis sp. ATCC 49242]
Length = 434
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 171/332 (51%), Gaps = 63/332 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ ++VIR+SGP L A +PR A L + DP LD GL ++FP
Sbjct: 14 GRTAIAVIRLSGPGVRAVLSEFAG----STPEPRVARLVELRDPRDGETLDRGLTIFFPA 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+S TGED EF VHG AV+ +L AL++ PGLR AEPGEF++R F N KLDL+Q EAL
Sbjct: 70 PHSATGEDYAEFHVHGGRAVVGGVLAALSRRPGLRSAEPGEFARRGFANGKLDLSQAEAL 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL+ A+TE QR++AL G L++ W
Sbjct: 130 ADLVDAQTEAQRRQALRIAGGALRRRVEAW------------------------------ 159
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R+ +++ +E ++ S++ V + FS D + + +L V
Sbjct: 160 -RAALIEALALVEAELDFSDEGDVSV------------------FSADRL--EALLQPVL 198
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S++ ++E R+R G +I+G PN GKS+L+N L ++ ++IV+ PG
Sbjct: 199 SEI---RAALED-----APASERMRDGFLVMILGAPNAGKSTLLNALARRDLAIVSPTPG 250
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRD+IE HLD+GG PV +DTAGLR +I
Sbjct: 251 TTRDMIEAHLDLGGLPVTFVDTAGLREAEDEI 282
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFAL +G G+ ++VIR+SGP L A P+PR A L + DP L
Sbjct: 4 DTIFALGTGAGRTAIAVIRLSGPGVRAVLSEFAG----STPEPRVARLVELRDPRDGETL 59
Query: 88 DEGLCLWFP 96
D GL ++FP
Sbjct: 60 DRGLTIFFP 68
>gi|241781518|ref|XP_002400281.1| GTPase mss1/trme, putative [Ixodes scapularis]
gi|215510712|gb|EEC20165.1| GTPase mss1/trme, putative [Ixodes scapularis]
Length = 382
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 130/341 (38%), Positives = 187/341 (54%), Gaps = 66/341 (19%)
Query: 100 KCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKP 159
+ ++ IRVSGP+T + L+ MA K + PR A LR ++ P S V LD + +WFP P
Sbjct: 11 RSALATIRVSGPNTASVLRRMARI---KRAAPRKALLRRLIHPESGVHLDTAIVIWFPSP 67
Query: 160 NSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKR---AFFNNKLDLTQTE 216
S+TGEDCCE VHG AV+N +L AL+++ LR A+PGEF++R AF N K+D
Sbjct: 68 RSYTGEDCCELHVHGGAAVVNGVLKALSEMEDLRQAQPGEFTQRQVSAFLNGKMD----- 122
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
L +++G L +E +++LA +E D S+ + +
Sbjct: 123 -----------------LAEVEGLADLLQAETEAQRMQALAQMEG--DLSK---LYRGWM 160
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
+ ++ CLA++EA+IDFSED+ I++ IL +
Sbjct: 161 DNLKK-------------------------------CLANIEAFIDFSEDQGIDEAILGS 189
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+Q +L I+ H+ + G R+R G+K IVG NVGKSSL N LC++ +IV+ I
Sbjct: 190 AAAQAKRLAKEIQDHLS-DGRRGERLRGGVKVAIVGRTNVGKSSLFNALCRRDAAIVSPI 248
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNL 437
GTTRDV+E LDIGGYP + DTAGLR T+ D +ETEG L
Sbjct: 249 AGTTRDVVESPLDIGGYPAVFCDTAGLR-TSEDPVETEGVL 288
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TI+ALSSG + ++ IRVSGP+T + L+ MA K PR A LR ++ P S V LD
Sbjct: 1 TIYALSSGAVRSALATIRVSGPNTASVLRRMARI---KRAAPRKALLRRLIHPESGVHLD 57
Query: 89 EGLCLWFP 96
+ +WFP
Sbjct: 58 TAIVIWFP 65
>gi|426197968|gb|EKV47894.1| hypothetical protein AGABI2DRAFT_202137 [Agaricus bisporus var.
bisporus H97]
Length = 553
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 133/334 (39%), Positives = 178/334 (53%), Gaps = 61/334 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR-NIVDPVS-EVVLDEGLCLWF 156
G+ GV+VIRVSGP+ L + M K + R IV+P VLD+GL ++F
Sbjct: 73 GRGGVAVIRVSGPEALEVWRKMVRPLKPKPRPLPWKLERCKIVNPEDPNEVLDDGLSVFF 132
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P SFT E E H A++ +LGAL+KLP LRPAEPGEF+KRAF N +LDLT+ E
Sbjct: 133 QAPKSFTTEPILELHTHSGRALLATLLGALSKLPFLRPAEPGEFTKRAFLNGRLDLTEVE 192
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
L DLI AETE QR+ A G ++Q+Y
Sbjct: 193 GLADLIDAETEEQRKIASRGAWGEVRQVY------------------------------- 221
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
+ +R++++ CLA VEA IDF E E +E+ + +
Sbjct: 222 DDLRTRIIH---------------------------CLAQVEALIDFGEGEDLEEGVYDQ 254
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+ L I+ H+ N+ G IRSGIK I G PN GKSSL+NFL Q++ +IVTSI
Sbjct: 255 AHQEAQVLLTQIKNHLT-DNRRGEIIRSGIKLAIFGPPNSGKSSLLNFLAQREAAIVTSI 313
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
PGTTRDV++ LDIGG PV++ DTAG+R T ++
Sbjct: 314 PGTTRDVLQLTLDIGGMPVVVADTAGVRATKDEV 347
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLR-NIVDPVS-K 84
K TI+ALS+ G+ GV+VIRVSGP+ L + M K + R IV+P
Sbjct: 62 KQTIYALSTPPGRGGVAVIRVSGPEALEVWRKMVRPLKPKPRPLPWKLERCKIVNPEDPN 121
Query: 85 VVLDEGLCLWF 95
VLD+GL ++F
Sbjct: 122 EVLDDGLSVFF 132
>gi|281209236|gb|EFA83409.1| GTP-binding protein 3 [Polysphondylium pallidum PN500]
Length = 595
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 132/352 (37%), Positives = 182/352 (51%), Gaps = 77/352 (21%)
Query: 100 KCGVSVIRVSGPDTLNALKSMA----------------CYPDQKVSKPRYASLRNIVDPV 143
K GV++IRVSGP ++ AL+ + D + PR L N DP
Sbjct: 111 KSGVAIIRVSGPQSMTALQQLTRKVLVTNSSTSTTTTTTSSDYNIV-PRMTVLSNFYDPT 169
Query: 144 SEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKR 203
S LD G+ +WF PNSFTGED E +HG AVI+ +L AL+K+ GLR AEPGEF+KR
Sbjct: 170 SGEQLDRGMYVWFQGPNSFTGEDVLELHIHGGRAVIHDMLEALSKVDGLRMAEPGEFTKR 229
Query: 204 AFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYI 263
AF N K+DLT+ E L DL+ A+T QR+ AL QM+G++ +LY+E R ++ + A +EAYI
Sbjct: 230 AFENGKMDLTEVEGLADLLDAQTNQQRKIALQQMQGSIGKLYTELRDQLIRASAYMEAYI 289
Query: 264 DFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDF 323
DF +D IE ++ + +++ + I KH+ K G ++R G I
Sbjct: 290 DFGDDAEIEPAVVEQSKQRIIAIRNKIMKHLT-DGKRGEKLRDGATVTIIGPP------- 341
Query: 324 SEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMN 383
N +S ++ L L+N+ R+ I S I G
Sbjct: 342 -----------NAGKSSLINL---------LANR-----RASIVSPIEG----------- 365
Query: 384 FLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDV+E LDIGGYPVIL DTAG+R +T D+IE EG
Sbjct: 366 ---------------TTRDVVEVMLDIGGYPVILGDTAGIREST-DVIEREG 401
>gi|427427566|ref|ZP_18917610.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Caenispirillum
salinarum AK4]
gi|425883492|gb|EKV32168.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Caenispirillum
salinarum AK4]
Length = 444
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 129/343 (37%), Positives = 180/343 (52%), Gaps = 76/343 (22%)
Query: 99 GKCGVSVIRVSGP---DTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLW 155
G+ GV+++R+SGP L+AL + A P +PR A+ + E V D+GL L
Sbjct: 13 GRAGVAIVRISGPLADAALSALTAGAPLP-----QPRRAARVRVSGEGGEQV-DDGLALR 66
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
FP P SFTGED E +HGS AV+ A++ L+ GLR AEPGEF++RAF N K+DLTQ
Sbjct: 67 FPAPASFTGEDVVELHLHGSRAVMEAVMALLSAQEGLRVAEPGEFTRRAFENGKMDLTQA 126
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
EAL DLI AET QR
Sbjct: 127 EALADLIDAETAAQR--------------------------------------------- 141
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI---IEDN 332
R + Q+ G++ + + VR LA +EA+IDF ++E+ E
Sbjct: 142 ----RQALRQMDGALARLYDAWRDRLVR---------ALAHLEAFIDFPDEELPPAAERA 188
Query: 333 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
I +V L + H++ ++ G R+R G+ I+G PN GKSSL+N L Q++ +I
Sbjct: 189 IWGSVEG----LTAEMRSHLDDGHR-GERLRDGLHIAIIGPPNAGKSSLLNALAQREAAI 243
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
V+ I GTTRDV++ HLD+GGYPV+L DTAGLR ++ IE+EG
Sbjct: 244 VSDIAGTTRDVVDVHLDLGGYPVVLADTAGLR-EAAETIESEG 285
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA ++ G+ GV+++R+SGP AL ++ +P+PR A+ R V +D
Sbjct: 4 TIFAPATAPGRAGVAIVRISGPLADAALSALTA--GAPLPQPRRAA-RVRVSGEGGEQVD 60
Query: 89 EGLCLWFP 96
+GL L FP
Sbjct: 61 DGLALRFP 68
>gi|323353023|gb|EGA85323.1| Mss1p [Saccharomyces cerevisiae VL3]
Length = 526
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 136/364 (37%), Positives = 182/364 (50%), Gaps = 80/364 (21%)
Query: 92 CLWFPRHGKCGVSVIRVSGPDT---LNALKSMACYPDQKVSKPRYASLRNIVDPVS---- 144
L P + +++IR+SG N L + P R A LRNI P S
Sbjct: 41 ALSTPANQTSAIAIIRISGTHAKYIYNRLXDSSTVP-----PIRKAILRNIYSPSSCSVK 95
Query: 145 -------EVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL------PG 191
+++LD L L+F P SFTGED E VHG AV+N+IL A+ L
Sbjct: 96 PHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILXAIGSLHDRSSGKD 155
Query: 192 LRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQL 251
+R A PG+FS+RAF N K DLTQ E + DLI +ETE QR+ AL G+ K L+ WR+
Sbjct: 156 IRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRET 215
Query: 252 ILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSV 311
I+E++A + A IDF++D SQ +Q I ++E K++
Sbjct: 216 IIENMAQLTAIIDFADDN-----------SQEIQNTDEIFHNVE-------------KNI 251
Query: 312 ICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIV 371
ICL R Q+V +EK L N GIK V++
Sbjct: 252 ICL-----------------------RDQIVTFMQKVEKSTILQN--------GIKLVLL 280
Query: 372 GEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDII 431
G PNVGKSSL+N L ISIV+ IPGTTRD I+ +++ GY VI+ DTAG+R +SD I
Sbjct: 281 GAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIREKSSDKI 340
Query: 432 ETEG 435
E G
Sbjct: 341 EMLG 344
>gi|71083056|ref|YP_265775.1| tRNA modification GTPase [Candidatus Pelagibacter ubique HTCC1062]
gi|123647187|sp|Q4FNR7.1|MNME_PELUB RecName: Full=tRNA modification GTPase MnmE
gi|71062169|gb|AAZ21172.1| tRNA modification GTPase [Candidatus Pelagibacter ubique HTCC1062]
Length = 443
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 123/334 (36%), Positives = 186/334 (55%), Gaps = 67/334 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSM--ACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWF 156
G G++++RVSG DT +K + A P+ R A+LR I + ++DEG+ LWF
Sbjct: 11 GISGIAIVRVSGKDTKKVIKLLTNAALPE-----TRVATLRKINKINTSELIDEGIILWF 65
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P P S+TGED EF +HGS AVI+A+ +++K+ R A+PGEF+K AF N K++L + E
Sbjct: 66 PGPESYTGEDMAEFHIHGSKAVIDALHHSISKIKNCRLADPGEFTKLAFQNGKINLLKAE 125
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
++ DLI AETE+QRQ+A+ M G S D+
Sbjct: 126 SIADLISAETEIQRQQAIKIMNGK-------------------------SADK------F 154
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
N +R +++++ L+ VEA IDF ++++ ED IL
Sbjct: 155 NNLREKLLKI---------------------------LSHVEAKIDFPDEDLPED-ILKN 186
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
++ ++ +I+K ++ K G RIR G K I+G N GKSSL+N L + ++IV+ I
Sbjct: 187 IKKISNEVILNIKKILD-DQKVGERIREGFKIAIIGPTNAGKSSLLNHLSNRDVAIVSEI 245
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRDVIE HL+I GYPV++ DTAG+R + ++I
Sbjct: 246 AGTTRDVIETHLNIDGYPVVVSDTAGIRDSKNEI 279
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 141/285 (49%), Gaps = 66/285 (23%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TI+ALS+G G G++++RVSG DT +K + + +P+ R A+LR I + ++D
Sbjct: 2 TIYALSTGPGISGIAIVRVSGKDTKKVIKLLT---NAALPETRVATLRKINKINTSELID 58
Query: 89 EGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVL 148
EG+ LWFP GP++ Y + +++ + ++D
Sbjct: 59 EGIILWFP-------------GPES---------YTGEDMAEFHIHGSKAVIDA------ 90
Query: 149 DEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNN 208
+H SI +K+ R A+PGEF+K AF N
Sbjct: 91 -----------------------LHHSI----------SKIKNCRLADPGEFTKLAFQNG 117
Query: 209 KLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSED 268
K++L + E++ DLI AETE+QRQ+A+ M G ++ R+ +L+ L+ VEA IDF ++
Sbjct: 118 KINLLKAESIADLISAETEIQRQQAIKIMNGKSADKFNNLREKLLKILSHVEAKIDFPDE 177
Query: 269 EIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
++ ED IL ++ ++ +I+K ++ K G RIR G K I
Sbjct: 178 DLPED-ILKNIKKISNEVILNIKKILD-DQKVGERIREGFKIAII 220
>gi|409075319|gb|EKM75700.1| hypothetical protein AGABI1DRAFT_64063 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 553
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 133/335 (39%), Positives = 178/335 (53%), Gaps = 63/335 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVS-EVVLDEGLCLW 155
G+ GV+VIRVSG + L M P + +P L IV+P VLD+GL ++
Sbjct: 73 GRGGVAVIRVSGAEALEVWHKM-VRPLKPKRRPLPWKLERCKIVNPEDPNEVLDDGLSVF 131
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
F P SFT E E H A++ +L AL+KLP LRPAEPGEF+KRAF N +LDLT+
Sbjct: 132 FQAPKSFTTEPILELHAHSGRALLATLLSALSKLPFLRPAEPGEFTKRAFLNGRLDLTEV 191
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
E L DLI AETE QR+ A G ++Q+Y
Sbjct: 192 EGLADLIDAETEEQRKIASRGAWGEVRQVY------------------------------ 221
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILN 335
+ +R++++ CLA VEA IDF E E +E+ + +
Sbjct: 222 -DDLRTRIIH---------------------------CLAQVEALIDFGEGEDLEEGVYD 253
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
R + L I+ H+ N+ G IRSGIK I G PN GKSSL+NFL Q++ +IVTS
Sbjct: 254 QARQEAQVLLTQIKNHLT-DNRRGEIIRSGIKLAIFGPPNSGKSSLLNFLAQREAAIVTS 312
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
IPGTTRDV++ LDIGG PV++ DTAG+R T ++
Sbjct: 313 IPGTTRDVLQLTLDIGGMPVVVADTAGVRATKDEV 347
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMA-CYPDQKVPKPRYASLRNIVDPVS-K 84
K TI+ALS+ G+ GV+VIRVSG + L M ++ P P IV+P
Sbjct: 62 KQTIYALSTPPGRGGVAVIRVSGAEALEVWHKMVRPLKPKRRPLPWKLERCKIVNPEDPN 121
Query: 85 VVLDEGLCLWF 95
VLD+GL ++F
Sbjct: 122 EVLDDGLSVFF 132
>gi|256273535|gb|EEU08469.1| Mss1p [Saccharomyces cerevisiae JAY291]
Length = 526
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 136/364 (37%), Positives = 182/364 (50%), Gaps = 80/364 (21%)
Query: 92 CLWFPRHGKCGVSVIRVSGPDT---LNALKSMACYPDQKVSKPRYASLRNIVDPVS---- 144
L P + +++IR+SG N L + P R A LRNI P S
Sbjct: 41 ALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVP-----PIRKAILRNIYSPSSCSVK 95
Query: 145 -------EVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL------PG 191
+++LD L L+F P SFTGED E VHG AV+N+IL A+ L
Sbjct: 96 PHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGKD 155
Query: 192 LRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQL 251
+R A PG+FS+RAF N K DLTQ E + DLI +ETE QR+ AL G+ K L+ WR+
Sbjct: 156 IRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRET 215
Query: 252 ILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSV 311
I+E++A + A IDF++D SQ +Q I ++E K++
Sbjct: 216 IIENMAQLTAIIDFADDN-----------SQEIQNTDEIFHNVE-------------KNI 251
Query: 312 ICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIV 371
ICL R Q+V +EK L N GIK V++
Sbjct: 252 ICL-----------------------RDQIVTFMQKVEKSTILQN--------GIKLVLL 280
Query: 372 GEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDII 431
G PNVGKSSL+N L ISIV+ IPGTTRD I+ +++ GY VI+ DTAG+R +SD I
Sbjct: 281 GAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIREKSSDKI 340
Query: 432 ETEG 435
E G
Sbjct: 341 EMLG 344
>gi|6323665|ref|NP_013736.1| Mss1p [Saccharomyces cerevisiae S288c]
gi|1709142|sp|P32559.2|MSS1_YEAST RecName: Full=tRNA modification GTPase MSS1, mitochondrial; Flags:
Precursor
gi|798934|emb|CAA89126.1| Mss1p [Saccharomyces cerevisiae]
gi|110610140|gb|ABG77646.1| mitochondrial GTP-binding protein [Saccharomyces cerevisiae]
gi|190408262|gb|EDV11527.1| GTPase MSS1, mitochondrial precursor [Saccharomyces cerevisiae
RM11-1a]
gi|285814026|tpg|DAA09921.1| TPA: Mss1p [Saccharomyces cerevisiae S288c]
gi|323332012|gb|EGA73423.1| Mss1p [Saccharomyces cerevisiae AWRI796]
Length = 526
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 136/364 (37%), Positives = 182/364 (50%), Gaps = 80/364 (21%)
Query: 92 CLWFPRHGKCGVSVIRVSGPDT---LNALKSMACYPDQKVSKPRYASLRNIVDPVS---- 144
L P + +++IR+SG N L + P R A LRNI P S
Sbjct: 41 ALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVP-----PIRKAILRNIYSPSSCSVK 95
Query: 145 -------EVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL------PG 191
+++LD L L+F P SFTGED E VHG AV+N+IL A+ L
Sbjct: 96 PHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGKD 155
Query: 192 LRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQL 251
+R A PG+FS+RAF N K DLTQ E + DLI +ETE QR+ AL G+ K L+ WR+
Sbjct: 156 IRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRET 215
Query: 252 ILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSV 311
I+E++A + A IDF++D SQ +Q I ++E K++
Sbjct: 216 IIENMAQLTAIIDFADDN-----------SQEIQNTDEIFHNVE-------------KNI 251
Query: 312 ICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIV 371
ICL R Q+V +EK L N GIK V++
Sbjct: 252 ICL-----------------------RDQIVTFMQKVEKSTILQN--------GIKLVLL 280
Query: 372 GEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDII 431
G PNVGKSSL+N L ISIV+ IPGTTRD I+ +++ GY VI+ DTAG+R +SD I
Sbjct: 281 GAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIREKSSDKI 340
Query: 432 ETEG 435
E G
Sbjct: 341 EMLG 344
>gi|151946184|gb|EDN64415.1| mitochondrial splicing system relatd protein [Saccharomyces
cerevisiae YJM789]
Length = 526
Score = 204 bits (520), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 136/364 (37%), Positives = 182/364 (50%), Gaps = 80/364 (21%)
Query: 92 CLWFPRHGKCGVSVIRVSGPDT---LNALKSMACYPDQKVSKPRYASLRNIVDPVS---- 144
L P + +++IR+SG N L + P R A LRNI P S
Sbjct: 41 ALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVP-----PIRKAILRNIYSPSSCSVK 95
Query: 145 -------EVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL------PG 191
+++LD L L+F P SFTGED E VHG AV+N+IL A+ L
Sbjct: 96 PHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGKD 155
Query: 192 LRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQL 251
+R A PG+FS+RAF N K DLTQ E + DLI +ETE QR+ AL G+ K L+ WR+
Sbjct: 156 IRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRET 215
Query: 252 ILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSV 311
I+E++A + A IDF++D SQ +Q I ++E K++
Sbjct: 216 IIENMAQLTAIIDFADDN-----------SQEIQNTDEIFHNVE-------------KNI 251
Query: 312 ICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIV 371
ICL R Q+V +EK L N GIK V++
Sbjct: 252 ICL-----------------------RDQIVTFMQKVEKSTILQN--------GIKLVLL 280
Query: 372 GEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDII 431
G PNVGKSSL+N L ISIV+ IPGTTRD I+ +++ GY VI+ DTAG+R +SD I
Sbjct: 281 GAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIREKSSDKI 340
Query: 432 ETEG 435
E G
Sbjct: 341 EMLG 344
>gi|392297183|gb|EIW08283.1| Mss1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 526
Score = 204 bits (520), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 135/362 (37%), Positives = 181/362 (50%), Gaps = 76/362 (20%)
Query: 92 CLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKP-RYASLRNIVDPVS------ 144
L P + +++IR+SG + D P R A LRNI P S
Sbjct: 41 ALSTPANQTSAIAIIRISGTHAKYIYNRLV---DSSTVLPIRKAILRNIYSPSSCSVKPH 97
Query: 145 -----EVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL------PGLR 193
+++LD L L+F P SFTGED E VHG AV+N+IL A+ L +R
Sbjct: 98 DQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGKDIR 157
Query: 194 PAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLIL 253
A PG+FS+RAF N K DLTQ E + DLI +ETE QR+ AL G+ K L+ WR+ I+
Sbjct: 158 FALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRETII 217
Query: 254 ESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
E++A + A IDF++D SQ +Q I ++E K++IC
Sbjct: 218 ENMAQLTAIIDFADDN-----------SQEIQNTDEIFHNVE-------------KNIIC 253
Query: 314 LASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGE 373
L R Q+V +EK L N GIK V++G
Sbjct: 254 L-----------------------RDQIVTFMQKVEKSTILQN--------GIKLVLLGA 282
Query: 374 PNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIET 433
PNVGKSSL+N L ISIV+ IPGTTRD I+ +++ GY VI+ DTAG+R +SD IE
Sbjct: 283 PNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIREKSSDKIEM 342
Query: 434 EG 435
G
Sbjct: 343 LG 344
>gi|349580307|dbj|GAA25467.1| K7_Mss1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 526
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 136/364 (37%), Positives = 182/364 (50%), Gaps = 80/364 (21%)
Query: 92 CLWFPRHGKCGVSVIRVSGPDT---LNALKSMACYPDQKVSKPRYASLRNIVDPVS---- 144
L P + +++IR+SG N L + P R A LRNI P S
Sbjct: 41 ALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVP-----PIRKAILRNIYSPSSCSVK 95
Query: 145 -------EVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL------PG 191
+++LD L L+F P SFTGED E VHG AV+N+IL A+ L
Sbjct: 96 PHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGKD 155
Query: 192 LRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQL 251
+R A PG+FS+RAF N K DLTQ E + DLI +ETE QR+ AL G+ K L+ WR+
Sbjct: 156 IRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRET 215
Query: 252 ILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSV 311
I+E++A + A IDF++D SQ +Q I ++E K++
Sbjct: 216 IIENMAQLTAIIDFADDN-----------SQEIQNTDEIFHNVE-------------KNI 251
Query: 312 ICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIV 371
ICL R Q+V +EK L N GIK V++
Sbjct: 252 ICL-----------------------RDQIVTFMQKVEKSTILQN--------GIKLVLL 280
Query: 372 GEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDII 431
G PNVGKSSL+N L ISIV+ IPGTTRD I+ +++ GY VI+ DTAG+R +SD I
Sbjct: 281 GAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIREKSSDKI 340
Query: 432 ETEG 435
E G
Sbjct: 341 EMLG 344
>gi|323336238|gb|EGA77509.1| Mss1p [Saccharomyces cerevisiae Vin13]
gi|365763754|gb|EHN05280.1| Mss1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 526
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 136/364 (37%), Positives = 181/364 (49%), Gaps = 80/364 (21%)
Query: 92 CLWFPRHGKCGVSVIRVSGPDT---LNALKSMACYPDQKVSKPRYASLRNIVDPVS---- 144
L P + +++IR+SG N L + P R A LRNI P S
Sbjct: 41 ALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVP-----PIRKAILRNIYSPSSCSVK 95
Query: 145 -------EVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL------PG 191
+++LD L L+F P SFTGED E VHG AV+N+IL A+ L
Sbjct: 96 PHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGKD 155
Query: 192 LRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQL 251
+R A PG+FS+RAF N K DLTQ E + DLI +ETE QR+ AL G+ K L+ WR+
Sbjct: 156 IRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRET 215
Query: 252 ILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSV 311
I+E++A + A IDF++D SQ +Q I +E K++
Sbjct: 216 IIENMAQLTAIIDFADDN-----------SQEIQNTDEIFHBVE-------------KNI 251
Query: 312 ICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIV 371
ICL R Q+V +EK L N GIK V++
Sbjct: 252 ICL-----------------------RDQIVTFMQKVEKSTILQN--------GIKLVLL 280
Query: 372 GEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDII 431
G PNVGKSSL+N L ISIV+ IPGTTRD I+ +++ GY VI+ DTAG+R +SD I
Sbjct: 281 GAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIREKSSDKI 340
Query: 432 ETEG 435
E G
Sbjct: 341 EMLG 344
>gi|182678268|ref|YP_001832414.1| tRNA modification GTPase TrmE [Beijerinckia indica subsp. indica
ATCC 9039]
gi|205829118|sp|B2IJQ3.1|MNME_BEII9 RecName: Full=tRNA modification GTPase MnmE
gi|182634151|gb|ACB94925.1| tRNA modification GTPase TrmE [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 451
Score = 204 bits (519), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 119/333 (35%), Positives = 170/333 (51%), Gaps = 63/333 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ V+++RVSGP L ++A Y +PR A+L + DP + LDE L LWFP
Sbjct: 28 QGRSAVAIVRVSGPKAGFLLGALAGY----CPEPRRATLAILHDPENGEALDEALVLWFP 83
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV+ +L AL + +RPAEPGEF++RA N KLDL + E
Sbjct: 84 GPKSFTGEDCAEFHVHGGRAVMAGLLAALGRFEQVRPAEPGEFTRRALLNGKLDLAEVEG 143
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L D+I+AETE W++
Sbjct: 144 LADMIEAETE--------------------WQR--------------------------- 156
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
R + Q+ G++ + E+ R + + LA EA IDFS++ + V
Sbjct: 157 --RQALRQMRGALSRQAEM-------WRQALLEALSLA--EAEIDFSDEADVPPETSRRV 205
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+ + + + + + G RIR G+ VI+G PN GKS+L+N L +++++IV+ I
Sbjct: 206 AALIEPVLADLRAELG-QARAGERIREGLSIVIMGPPNAGKSTLLNALARREVAIVSEIA 264
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRD+IE HLD+ G V+L DTAGLR I
Sbjct: 265 GTTRDLIEVHLDLKGCAVVLTDTAGLRDNADKI 297
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 22 SHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDP 81
SH A TIFA +SG G+ V+++RVSGP L ++A Y P+PR A+L + DP
Sbjct: 13 SHAATLETIFAPASGQGRSAVAIVRVSGPKAGFLLGALAGY----CPEPRRATLAILHDP 68
Query: 82 VSKVVLDEGLCLWFP 96
+ LDE L LWFP
Sbjct: 69 ENGEALDEALVLWFP 83
>gi|259148601|emb|CAY81846.1| Mss1p [Saccharomyces cerevisiae EC1118]
Length = 526
Score = 204 bits (518), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 136/364 (37%), Positives = 181/364 (49%), Gaps = 80/364 (21%)
Query: 92 CLWFPRHGKCGVSVIRVSGPDT---LNALKSMACYPDQKVSKPRYASLRNIVDPVS---- 144
L P + +++IR+SG N L + P R A LRNI P S
Sbjct: 41 ALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVP-----PIRKAILRNIYSPSSCSVK 95
Query: 145 -------EVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL------PG 191
+++LD L L+F P SFTGED E VHG AV+N+IL A+ L
Sbjct: 96 PHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGKD 155
Query: 192 LRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQL 251
+R A PG+FS+RAF N K DLTQ E + DLI +ETE QR+ AL G+ K L+ WR+
Sbjct: 156 IRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRET 215
Query: 252 ILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSV 311
I+E++A + A IDF++D SQ +Q I +E K++
Sbjct: 216 IIENMAQLTAIIDFADDN-----------SQEIQNTDEIFHDVE-------------KNI 251
Query: 312 ICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIV 371
ICL R Q+V +EK L N GIK V++
Sbjct: 252 ICL-----------------------RDQIVTFMQKVEKSTILQN--------GIKLVLL 280
Query: 372 GEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDII 431
G PNVGKSSL+N L ISIV+ IPGTTRD I+ +++ GY VI+ DTAG+R +SD I
Sbjct: 281 GAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIREKSSDKI 340
Query: 432 ETEG 435
E G
Sbjct: 341 EMLG 344
>gi|4006|emb|CAA49238.1| GTPase [Saccharomyces cerevisiae]
Length = 526
Score = 204 bits (518), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 136/364 (37%), Positives = 181/364 (49%), Gaps = 80/364 (21%)
Query: 92 CLWFPRHGKCGVSVIRVSGPDT---LNALKSMACYPDQKVSKPRYASLRNIVDPVS---- 144
L P + + +IR+SG N L + P R A LRNI P S
Sbjct: 41 ALSTPANQTSAIRIIRISGTHAKYIYNRLVDSSTVP-----PIRKAILRNIYSPSSCSVK 95
Query: 145 -------EVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL------PG 191
+++LD L L+F P SFTGED E VHG AV+N+IL A+ L
Sbjct: 96 PHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGKD 155
Query: 192 LRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQL 251
+R A PG+FS+RAF N K DLTQ E + DLI +ETE QR+ AL G+ K L+ WR+
Sbjct: 156 IRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRET 215
Query: 252 ILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSV 311
I+E++A + A IDF++D SQ +Q I ++E K++
Sbjct: 216 IIENMAQLTAIIDFADDN-----------SQEIQNTDEIFHNVE-------------KNI 251
Query: 312 ICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIV 371
ICL R Q+V +EK L N GIK V++
Sbjct: 252 ICL-----------------------RDQIVTFMQKVEKSTILQN--------GIKLVLL 280
Query: 372 GEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDII 431
G PNVGKSSL+N L ISIV+ IPGTTRD I+ +++ GY VI+ DTAG+R +SD I
Sbjct: 281 GAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIREKSSDKI 340
Query: 432 ETEG 435
E G
Sbjct: 341 EMLG 344
>gi|150863681|ref|XP_001382235.2| hypothetical protein PICST_56161 [Scheffersomyces stipitis CBS
6054]
gi|149384937|gb|ABN64206.2| predicted protein, partial [Scheffersomyces stipitis CBS 6054]
Length = 478
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 127/349 (36%), Positives = 177/349 (50%), Gaps = 76/349 (21%)
Query: 99 GKCGVSVIRVSGPDT---LNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLW 155
G+ + VIRVSGP++ N L + P K R AS+R + P S ++LDE L L+
Sbjct: 12 GRAAIGVIRVSGPESKYVFNKLTNTKTQP-----KHRVASVRKLYSPKSGILLDEALTLF 66
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLP------GLRPAEPGEFSKRAFFNNK 209
F PN++TGED E +HG A+I ++L A+ +L +R AE GEFS RAF N +
Sbjct: 67 FNSPNTYTGEDLLELHLHGGTAIIKSVLAAIKELHDPKKGINIRYAENGEFSSRAFVNGR 126
Query: 210 LDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDE 269
DLT+ E + D+I AETE QR +L + GN K+L+S+WR IL ++A + IDF ED
Sbjct: 127 FDLTEIEGIRDMIDAETETQRIASLSSLTGNTKELFSQWRVGILNNIALMTTLIDFGEDH 186
Query: 270 IIEDN--ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDE 327
+E+ + + V + +L I K+
Sbjct: 187 DLEETAQLFDNVEENIKKLEQEIHKY---------------------------------- 212
Query: 328 IIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQ 387
L VRS L G I+ V++G PN GKSSL+N L
Sbjct: 213 ------LQKVRSSETLLRG-------------------IRMVLLGPPNAGKSSLLNLLAN 247
Query: 388 KQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS-DIIETEG 435
+ +IV+ I GTTRD+I+ LDI GY V++ DTAG+R T S D IE EG
Sbjct: 248 EDAAIVSDIAGTTRDIIDVPLDINGYKVVIGDTAGIRDTESADKIEIEG 296
>gi|426401997|ref|YP_007020969.1| tRNA modification GTPase TrmE [Candidatus Endolissoclinum patella
L2]
gi|425858665|gb|AFX99701.1| tRNA modification GTPase TrmE [Candidatus Endolissoclinum patella
L2]
Length = 444
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/337 (35%), Positives = 182/337 (54%), Gaps = 65/337 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ +S++R+SGP +++ L + V PR SLR + D + VLD+ + + FPK
Sbjct: 14 GRSALSIVRISGPKSMDVLIDLTG----DVLPPRQLSLRLLHDSQNGEVLDKAMVVAFPK 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P S TGED E +HG AV++A+ L+ +PGLR A PGEF++RAF N+++DLT E +
Sbjct: 70 PISATGEDLVELHLHGGSAVLSAVCNYLSSMPGLRIAYPGEFTRRAFLNDRIDLTSAEGI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET+ QR RQ I ++ ++E + D+++
Sbjct: 130 LDLIDAETDKQR------------------RQAIAQATGNLELALKSWRDKLLS------ 165
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+A +EA+IDF +D + D I ++
Sbjct: 166 ----------------------------------AMAKIEAFIDFPDDGL-PDTIQQEIK 190
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ L + +E ++ RIR G++ IVG PN GKSSL+N+L ++ ++IV+SIPG
Sbjct: 191 NNLISLRAEMNLALEDASHAE-RIREGVQIAIVGAPNAGKSSLLNWLAKRDVAIVSSIPG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD++E +LDI GY V L DTAGLR T D+IE EG
Sbjct: 250 TTRDILEVYLDIDGYAVTLADTAGLREAT-DVIEAEG 285
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 14/133 (10%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
++TIFA ++ G+ +S++R+SGP +++ L + V PR SLR + D + V
Sbjct: 3 QDTIFAPATALGRSALSIVRISGPKSMDVLIDLTG----DVLPPRQLSLRLLHDSQNGEV 58
Query: 87 LDEGLCLWFPR----HGKCGVSVIRVSGPDTLNAL-KSMACYPDQKVSKP----RYASLR 137
LD+ + + FP+ G+ V + G L+A+ ++ P +++ P R A L
Sbjct: 59 LDKAMVVAFPKPISATGEDLVELHLHGGSAVLSAVCNYLSSMPGLRIAYPGEFTRRAFLN 118
Query: 138 NIVDPVS-EVVLD 149
+ +D S E +LD
Sbjct: 119 DRIDLTSAEGILD 131
>gi|336386014|gb|EGO27160.1| hypothetical protein SERLADRAFT_413673 [Serpula lacrymans var.
lacrymans S7.9]
Length = 597
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 130/348 (37%), Positives = 174/348 (50%), Gaps = 72/348 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMA---------CYPDQKVSKPRYASLRNIVDPVSEVVLD 149
GK GV+V+R+SGPD L A M Q+ P R+IV P ++ LD
Sbjct: 99 GKAGVAVVRISGPDALQAWSGMTRPATRRADPTSDRQREPTPWRMERRDIVHPTTKDKLD 158
Query: 150 EGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNK 209
+GL ++F P+SFT ED E +H AVI+++L AL +PG RPAEPGEF++RAF +
Sbjct: 159 DGLVVFFKAPSSFTTEDVLELHIHSGRAVISSVLSALAHIPGCRPAEPGEFTRRAFEGGR 218
Query: 210 LDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSED- 268
LDLTQ E L DLI AETELQR+ AL G KQ + E R ILE L +EA +DFSE+
Sbjct: 219 LDLTQVEGLKDLINAETELQRRMALQNAGGAAKQEFDELRSDILECLVLLEAIVDFSEEF 278
Query: 269 -EIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDE 327
E E+ + + L I H L+N G +RSGI+ I F
Sbjct: 279 HEGDEEKLFQDTQELARGLCDRISDH--LNNPRGEILRSGIRLAI----------FGPPN 326
Query: 328 IIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQ 387
+ + ++LN +L +
Sbjct: 327 VGKSSLLN------------------------------------------------YLAK 338
Query: 388 KQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
++ SIVT +PGTTRDV+E LD+GG PVI+ DTAGLR D++E G
Sbjct: 339 REASIVTDVPGTTRDVVELSLDLGGLPVIVADTAGLR-KADDLVENIG 385
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMA---------CYPDQKVPKPRYASLRN 77
+ T++ALS+ GK GV+V+R+SGPD L A M Q+ P P R+
Sbjct: 88 RRTVYALSTPLGKAGVAVVRISGPDALQAWSGMTRPATRRADPTSDRQREPTPWRMERRD 147
Query: 78 IVDPVSKVVLDEGLCLWF 95
IV P +K LD+GL ++F
Sbjct: 148 IVHPTTKDKLDDGLVVFF 165
>gi|323307689|gb|EGA60952.1| Mss1p [Saccharomyces cerevisiae FostersO]
Length = 484
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 135/364 (37%), Positives = 180/364 (49%), Gaps = 80/364 (21%)
Query: 92 CLWFPRHGKCGVSVIRVSGPDT---LNALKSMACYPDQKVSKPRYASLRNIVDPVS---- 144
L P + +++IR+SG N L + P R LRNI P S
Sbjct: 41 ALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVP-----PIRKXILRNIYSPSSCSVK 95
Query: 145 -------EVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL------PG 191
+++LD L L+F P SFTGED E VHG AV+N+IL A+ L
Sbjct: 96 PHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGKD 155
Query: 192 LRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQL 251
+R A PG+FS+RAF N K DLTQ E + DLI +ETE QR+ AL G+ K L+ WR+
Sbjct: 156 IRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRET 215
Query: 252 ILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSV 311
I+E++A + A IDF++D SQ +Q I +E K++
Sbjct: 216 IIENMAQLTAIIDFADDN-----------SQEIQNTDEIFHDVE-------------KNI 251
Query: 312 ICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIV 371
ICL R Q+V +EK L N GIK V++
Sbjct: 252 ICL-----------------------RDQIVTFMQKVEKSTILQN--------GIKLVLL 280
Query: 372 GEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDII 431
G PNVGKSSL+N L ISIV+ IPGTTRD I+ +++ GY VI+ DTAG+R +SD I
Sbjct: 281 GAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIREKSSDKI 340
Query: 432 ETEG 435
E G
Sbjct: 341 EMLG 344
>gi|408393370|gb|EKJ72635.1| hypothetical protein FPSE_07272 [Fusarium pseudograminearum CS3096]
Length = 545
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 128/344 (37%), Positives = 185/344 (53%), Gaps = 72/344 (20%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSE----VVLD-EGL 152
G+ G++VIR+SGP L K+ P + + KPR+A++R++ DP S ++LD E L
Sbjct: 43 QGRGGIAVIRISGPSCLEIYKAFC--PSKPLPKPRFATVRSLYDPCSAKNHPLILDSEAL 100
Query: 153 CLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG---LRPAEPGEFSKRAFFNNK 209
L+FP P + TG+D E VHG A + A+L A+ K +R AEPGEF+KRAFFNN+
Sbjct: 101 ILYFPNPKTVTGDDVLELHVHGGSATVKAVLAAIPKCATAHRIRYAEPGEFTKRAFFNNR 160
Query: 210 LDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDE 269
LDL Q E+L D + AETE QR+ A ++GN L ++ EA+
Sbjct: 161 LDLAQIESLSDTLAAETEQQRRAA---VRGNSGSLGRQY-----------EAW------- 199
Query: 270 IIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEII 329
R Q++ G IE A IDFSED+
Sbjct: 200 ----------REQLLLARGEIE---------------------------ALIDFSEDQHF 222
Query: 330 EDN---ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLC 386
+++ +L V +QV ++ SIE H + S + + +R+GI+ ++G PNVGKSSLMN +
Sbjct: 223 DESQAELLQNVTTQVARMLHSIELHEQGSQRSEL-LRNGIRIALLGPPNVGKSSLMNLIV 281
Query: 387 QKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
++ SIV+ GTTRD++E LDI GY DTAG R+ +S I
Sbjct: 282 GREASIVSGEAGTTRDIVEASLDIRGYLCSFADTAGFRSQSSQI 325
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 52/77 (67%), Gaps = 7/77 (9%)
Query: 25 AIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSK 84
A+ +TI+ALS+ G+ G++VIR+SGP L K+ P + +PKPR+A++R++ DP S
Sbjct: 31 AVDDTIYALSTAQGRGGIAVIRISGPSCLEIYKAFC--PSKPLPKPRFATVRSLYDPCSA 88
Query: 85 ----VVLD-EGLCLWFP 96
++LD E L L+FP
Sbjct: 89 KNHPLILDSEALILYFP 105
>gi|390600851|gb|EIN10245.1| tRNA modification GTPase TrmE [Punctularia strigosozonata HHB-11173
SS5]
Length = 480
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 130/343 (37%), Positives = 170/343 (49%), Gaps = 66/343 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVS------KPRYASLRNIVDPVSEVVLDEGL 152
GK GV+VIR+SGPD L+ + M KP +VDPV VLD+GL
Sbjct: 18 GKAGVAVIRISGPDALSVWQGMVKTAGTHYELMGPSPKPWRMQRCRVVDPVDGEVLDDGL 77
Query: 153 CLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDL 212
++F P SFT ED E +H AVI A+LGAL P LRPAEPGEF++RAF + +LDL
Sbjct: 78 AVFFKGPRSFTAEDTLELHIHSGRAVIKAVLGALATFPALRPAEPGEFTRRAFESGRLDL 137
Query: 213 TQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIE 272
TQ E L DLI AETE QR+ A +G+++ Y R I+ LA VEA IDF E E IE
Sbjct: 138 TQVEGLRDLIDAETEGQRKLATRVARGDIRVGYERLRGDIIHCLAMVEALIDFGEGEDIE 197
Query: 273 DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDN 332
D + R + +LH +I + N+ G +RSG++ VI F + + +
Sbjct: 198 DGVYEQARQRASELHTNILNLLS-DNRKGEIMRSGVRVVI----------FGPPNVGKSS 246
Query: 333 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
LN + Q +I H
Sbjct: 247 FLN----YLAQREAAIVTH----------------------------------------- 261
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IPGTTRDV+E LDIGG PV++ DTAG+R T D +E+ G
Sbjct: 262 ---IPGTTRDVLELSLDIGGLPVVVADTAGVR-QTEDAVESIG 300
>gi|154245777|ref|YP_001416735.1| tRNA modification GTPase TrmE [Xanthobacter autotrophicus Py2]
gi|154159862|gb|ABS67078.1| small GTP-binding protein [Xanthobacter autotrophicus Py2]
Length = 431
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 124/336 (36%), Positives = 182/336 (54%), Gaps = 66/336 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSM-ACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKP 159
GV+V+R+SGP+ A+ ++ P +V+ RY +L DP + LD GL L+FP P
Sbjct: 15 AGVAVLRISGPEAAAAVLALCGVLPPPRVA--RYGALS---DPRTGETLDRGLILFFPGP 69
Query: 160 NSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALG 219
S TGED E +HG AV+ A+L AL+ LPGLRPAE GEF++RA N KLDL + E L
Sbjct: 70 ASATGEDVAELHLHGGRAVVAAVLRALSALPGLRPAEAGEFTRRAHANGKLDLAEVEGLA 129
Query: 220 DLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTV 279
DL+ AE+E QR++AL +LAS
Sbjct: 130 DLVAAESEAQRKQAL--------------------ALAS--------------------- 148
Query: 280 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRS 339
G++ + +E R G+ S + L +EA IDFS++ + + +
Sbjct: 149 --------GALSRRVE-------EWRVGLVSALAL--IEAGIDFSDESDVSGEVTMDAVA 191
Query: 340 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGT 399
++ +L + + + + G R+R G+ I G PN GKS+L+N L ++ +IV+++PGT
Sbjct: 192 RLARLKEELLAALTDAAR-GERVRDGLVVAISGPPNAGKSTLLNRLAGREAAIVSALPGT 250
Query: 400 TRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TRDV+E HL++ G V LLDTAGLR TSD++E EG
Sbjct: 251 TRDVLEVHLELAGQAVTLLDTAGLR-ETSDLVEAEG 285
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ +T+FALSSG GV+V+R+SGP+ A+ ++ +P PR A + DP +
Sbjct: 1 MTDTLFALSSGRLPAGVAVLRISGPEAAAAVLALCGV----LPPPRVARYGALSDPRTGE 56
Query: 86 VLDEGLCLWFP 96
LD GL L+FP
Sbjct: 57 TLDRGLILFFP 67
>gi|144899662|emb|CAM76526.1| thiophene and furan oxidation protein ThdF [Magnetospirillum
gryphiswaldense MSR-1]
Length = 435
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 129/337 (38%), Positives = 175/337 (51%), Gaps = 68/337 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV+V R+SGP + + L S+ K +PR A+ + ++ D+GL L+FP
Sbjct: 14 GRGGVAVFRLSGPASADILHSLTG----KRPQPRLATRVRVRHGGEDI--DDGLALYFPA 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGE+ E +HG AV A+ AL +L GLRPAE GEFS+RAF N+KLDLT+ EA+
Sbjct: 68 PHSFTGEEVVELHLHGGRAVAAALSQALLEL-GLRPAEAGEFSRRAFLNDKLDLTRAEAI 126
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL+ AET QR++AL
Sbjct: 127 ADLVDAETAAQRRQALQ------------------------------------------- 143
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
QL G + +E + +R LA EA IDFS DE I D+++ V
Sbjct: 144 ------QLDGGLAALVEGWRQDLIR---------ALALTEAIIDFS-DEGIGDDLVEDVL 187
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
QV L + + R+R GI I+G PN GKSSLMN + ++++IV++ G
Sbjct: 188 GQVRALMADMRAKAREGQRR-ERLRDGIHIAILGAPNAGKSSLMNRIAGREVAIVSAKAG 246
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE HLD+ G+PV+L DTAGLR D IE EG
Sbjct: 247 TTRDVIETHLDLHGWPVVLADTAGLREAAED-IEAEG 282
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFAL+S G+ GV+V R+SGP + + L S+ K P+PR A+ + + D
Sbjct: 5 TIFALASAPGRGGVAVFRLSGPASADILHSLTG----KRPQPRLATRVRVRHGGEDI--D 58
Query: 89 EGLCLWFPR-HGKCGVSVI 106
+GL L+FP H G V+
Sbjct: 59 DGLALYFPAPHSFTGEEVV 77
>gi|357028649|ref|ZP_09090679.1| tRNA modification GTPase TrmE [Mesorhizobium amorphae CCNWGS0123]
gi|355537916|gb|EHH07166.1| tRNA modification GTPase TrmE [Mesorhizobium amorphae CCNWGS0123]
Length = 440
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 122/326 (37%), Positives = 166/326 (50%), Gaps = 64/326 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
G++VIR+SGP T ++++A + K R A+LR V+D GL L FP P
Sbjct: 17 AGIAVIRISGPQTRFVVETIAG----GMVKDRVATLRKF-RATDGTVIDNGLVLLFPGPG 71
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGED EF VHG AV +L + G+R AEPGEF++RAF N KLDL +TEAL D
Sbjct: 72 SFTGEDVAEFHVHGGRAVAMKMLETIAGFNGVRHAEPGEFTRRAFLNGKLDLVETEALAD 131
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
L+ AETE QR+ A+ +G LYS WR+ ++ + A +EA IDF++++ + ++ + V
Sbjct: 132 LVNAETEAQRRFAVQNAEGTQSALYSGWRRRLIHARAMIEAEIDFADEDDVPGSVSDAVW 191
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
S V + G I HI+ F EII D +
Sbjct: 192 SDVRAMIGEIGHHID--------------------------GFRAAEIIRDGF------E 219
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
VV L G PN GKSSL N L +++ +IVT PGTT
Sbjct: 220 VVIL---------------------------GAPNAGKSSLFNALARREAAIVTDEPGTT 252
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTT 426
RD++E LD+ G V + DTAGLR
Sbjct: 253 RDLLEVVLDLKGMRVRITDTAGLRAA 278
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+I ALSSG G++VIR+SGP T ++++A + K R A+LR V+
Sbjct: 5 QSIVALSSGRLPAGIAVIRISGPQTRFVVETIAG----GMVKDRVATLRKF-RATDGTVI 59
Query: 88 DEGLCLWFPRHG 99
D GL L FP G
Sbjct: 60 DNGLVLLFPGPG 71
>gi|329847386|ref|ZP_08262414.1| tRNA modification GTPase TrmE [Asticcacaulis biprosthecum C19]
gi|328842449|gb|EGF92018.1| tRNA modification GTPase TrmE [Asticcacaulis biprosthecum C19]
Length = 443
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 126/338 (37%), Positives = 178/338 (52%), Gaps = 68/338 (20%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ GVS++R+SGPD +AL+ + P R A +V ++DE + L+F
Sbjct: 12 QGRAGVSILRLSGPDAFSALQRLTDKP----VPARRAVFTALVHDGE--LIDEAVVLFFQ 65
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
PNSFTGEDC E VHGS A+++ + L ++ GLR A+PGEFS+RA N KLDLTQ EA
Sbjct: 66 GPNSFTGEDCVELHVHGSRAILDRLYVILAEM-GLRLAQPGEFSRRALENGKLDLTQAEA 124
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DL+ AE+E QR++A
Sbjct: 125 IADLVDAESEAQRRQA-------------------------------------------- 140
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+ Q+ G ++ E + V I LA +E YIDF DE + +++++
Sbjct: 141 -----LTQMGGGLKTQYEAWHAALVDI---------LARIEVYIDFP-DEDLPTELVDSI 185
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
++ + S+E I K G +IR G + VI+GEPN GKSSL N L + + +IVT I
Sbjct: 186 LDRMAAVQASLEAAIA-DAKRGRQIREGFRIVILGEPNAGKSSLFNALLKAETAIVTPIA 244
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE L IG Y V+L DTAGLR T++++E EG
Sbjct: 245 GTTRDVIEAELRIGPYSVLLYDTAGLR-ETAEVVEREG 281
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 131/288 (45%), Gaps = 70/288 (24%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ TIFAL+S G+ GVS++R+SGPD +AL+ + D+ VP R + D
Sbjct: 1 MNQTIFALASAQGRAGVSILRLSGPDAFSALQRLT---DKPVPARRAVFTALVHD---GE 54
Query: 86 VLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSE 145
++DE + L+F GP++ + + R I+D +
Sbjct: 55 LIDEAVVLFF-------------QGPNSFTGEDCVELHVHGS---------RAILDRLYV 92
Query: 146 VVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAF 205
++ + GL L P GEFS+RA
Sbjct: 93 ILAEMGLRLAQP----------------------------------------GEFSRRAL 112
Query: 206 FNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDF 265
N KLDLTQ EA+ DL+ AE+E QR++AL QM G LK Y W +++ LA +E YIDF
Sbjct: 113 ENGKLDLTQAEAIADLVDAESEAQRRQALTQMGGGLKTQYEAWHAALVDILARIEVYIDF 172
Query: 266 SEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
DE + +++++ ++ + S+E I K G +IR G + VI
Sbjct: 173 P-DEDLPTELVDSILDRMAAVQASLEAAIA-DAKRGRQIREGFRIVIL 218
>gi|323303561|gb|EGA57352.1| Mss1p [Saccharomyces cerevisiae FostersB]
Length = 413
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 134/364 (36%), Positives = 179/364 (49%), Gaps = 80/364 (21%)
Query: 92 CLWFPRHGKCGVSVIRVSGPDT---LNALKSMACYPDQKVSKPRYASLRNIVDPVS---- 144
L P + +++IR+SG N L + P R LRNI P S
Sbjct: 41 ALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVP-----PIRKXILRNIYSPSSCSVK 95
Query: 145 -------EVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL------PG 191
+++LD L L+F P SFTGED E VHG AV+N+IL A+ L
Sbjct: 96 PHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGKD 155
Query: 192 LRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQL 251
+R A PG+FS+RAF N K DLTQ E + DLI +ETE QR+ AL G+ K L+ WR+
Sbjct: 156 IRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRET 215
Query: 252 ILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSV 311
I+E++ + A IDF++D SQ +Q I +E K++
Sbjct: 216 IIENMXQLTAIIDFADDN-----------SQEIQNTDEIFHDVE-------------KNI 251
Query: 312 ICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIV 371
ICL R Q+V +EK L N GIK V++
Sbjct: 252 ICL-----------------------RDQIVTFMQKVEKSTILQN--------GIKLVLL 280
Query: 372 GEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDII 431
G PNVGKSSL+N L ISIV+ IPGTTRD I+ +++ GY VI+ DTAG+R +SD I
Sbjct: 281 GAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIREKSSDKI 340
Query: 432 ETEG 435
E G
Sbjct: 341 EMLG 344
>gi|336373164|gb|EGO01502.1| hypothetical protein SERLA73DRAFT_49114 [Serpula lacrymans var.
lacrymans S7.3]
Length = 591
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 129/353 (36%), Positives = 182/353 (51%), Gaps = 81/353 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMA---------CYPDQKVSKPRYASLRNIVDPVSEVVLD 149
GK GV+V+R+SGPD L A M Q+ P R+IV P ++ LD
Sbjct: 123 GKAGVAVVRISGPDALQAWSGMTRPATRRADPTSDRQREPTPWRMERRDIVHPTTKDKLD 182
Query: 150 EGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNK 209
+GL ++F P+SFT ED E +H AVI+++L AL +PG RPAEPGEF++RAF +
Sbjct: 183 DGLVVFFKAPSSFTTEDVLELHIHSGRAVISSVLSALAHIPGCRPAEPGEFTRRAFEGGR 242
Query: 210 LDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFS--- 266
LDLTQ E L DLI AETELQR+ AL G KQ + E R ILE L +EA +DFS
Sbjct: 243 LDLTQVEGLKDLINAETELQRRMALQNAGGAAKQEFDELRSDILECLVLLEAIVDFSEEF 302
Query: 267 ----EDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYID 322
E+++ +D++ N+ S ++++ +I+ L+N G +RSGI+ I
Sbjct: 303 HEGDEEKLFQDSMSNS--SSIIRVL-TID---HLNNPRGEILRSGIRLAI---------- 346
Query: 323 FSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLM 382
F + + ++LN
Sbjct: 347 FGPPNVGKSSLLN----------------------------------------------- 359
Query: 383 NFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
+L +++ SIVT +PGTTRDV+E LD+GG PVI+ DTAGLR D++E G
Sbjct: 360 -YLAKREASIVTDVPGTTRDVVELSLDLGGLPVIVADTAGLR-KADDLVENIG 410
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMA---------CYPDQKVPKPRYASLRN 77
+ T++ALS+ GK GV+V+R+SGPD L A M Q+ P P R+
Sbjct: 112 RRTVYALSTPLGKAGVAVVRISGPDALQAWSGMTRPATRRADPTSDRQREPTPWRMERRD 171
Query: 78 IVDPVSKVVLDEGLCLWF 95
IV P +K LD+GL ++F
Sbjct: 172 IVHPTTKDKLDDGLVVFF 189
>gi|68171554|ref|ZP_00544931.1| tRNA modification GTPase TrmE:Small GTP-binding protein
domain:GTP-binding [Ehrlichia chaffeensis str. Sapulpa]
gi|88658612|ref|YP_506891.1| tRNA modification GTPase TrmE [Ehrlichia chaffeensis str. Arkansas]
gi|123494024|sp|Q2GI42.1|MNME_EHRCR RecName: Full=tRNA modification GTPase MnmE
gi|67999020|gb|EAM85694.1| tRNA modification GTPase TrmE:Small GTP-binding protein
domain:GTP-binding [Ehrlichia chaffeensis str. Sapulpa]
gi|88600069|gb|ABD45538.1| tRNA modification GTPase TrmE [Ehrlichia chaffeensis str. Arkansas]
Length = 439
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 179/337 (53%), Gaps = 68/337 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV+VIR+SG D A K+ + KPR A+ + D EV+ DE + ++F
Sbjct: 12 GRSGVAVIRISGED---AAKAFVHFGINSSIKPRTATFTPLYDKDGEVI-DEAIVVYFVA 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED EF HGS AVI IL L K+ PA PGEFS RAF NNK+DLT+ EA+
Sbjct: 68 PNSFTGEDVVEFHTHGSFAVIKMILAELGKI--FVPAGPGEFSLRAFLNNKVDLTRAEAI 125
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI +ETE+ Q K ++Q+ +LE L
Sbjct: 126 VDLINSETEM-------QAKQAIRQMSG-----VLEKL-------------------YQN 154
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R Q++ + L+++EAYIDF E+ + + + +
Sbjct: 155 WRQQLIDI---------------------------LSNIEAYIDFPEE--VNSSAIANID 185
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L S+E H+ ++ G R+R GI I+GEPN GKS+L N L ++ I+IV+ G
Sbjct: 186 YLLNNLQKSLESHLN-DDRRGERLRQGIYVTILGEPNSGKSTLFNHLAKRDIAIVSEYAG 244
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD +E H+D+ GYP+I++DTAG+R +T D +E EG
Sbjct: 245 TTRDPLEAHIDVAGYPIIIIDTAGIREST-DPVEQEG 280
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFAL + G+ GV+VIR+SG D A K+ + KPR A+ + D +V+ D
Sbjct: 3 TIFALCTPWGRSGVAVIRISGED---AAKAFVHFGINSSIKPRTATFTPLYDKDGEVI-D 58
Query: 89 EGLCLWF 95
E + ++F
Sbjct: 59 EAIVVYF 65
>gi|339319646|ref|YP_004679341.1| tRNA modification GTPase [Candidatus Midichloria mitochondrii
IricVA]
gi|338225771|gb|AEI88655.1| tRNA modification GTPase [Candidatus Midichloria mitochondrii
IricVA]
Length = 370
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 134/337 (39%), Positives = 181/337 (53%), Gaps = 64/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+VIR+SGP A+ + Y +K + + A+L I E VLDE + L+F
Sbjct: 13 GKSGVAVIRISGPQA-RAVAKLIGY--EKELEHKRATLATIYTLNREQVLDEVILLFFAS 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SF GED E +HGSIA+IN +L L+K+ LR AEPGEF+K AF+N K+DL + E L
Sbjct: 70 PHSFNGEDILEIHLHGSIAIINDVLAELSKVTFLRIAEPGEFTKIAFYNGKMDLVKAEGL 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D + AET + QK + Q KQL E + N
Sbjct: 130 ADFLDAETSM--QKIIAQ-----KQLRGELS------------------------DTYNK 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R+ ++ GV L+ +EA IDF ED+I E+ +L+
Sbjct: 159 WRTDLI----------------GV-----------LSQLEALIDFPEDDIPEE-VLDWAA 190
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
V L I H+ + GV I +GI VI G PNVGKSSLMN L +K+I+IV+ I G
Sbjct: 191 KTVQSLIEEINLHLR-GHDQGVSIMNGINIVISGAPNVGKSSLMNLLAKKEIAIVSDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVI+ LD+GG+ V+L DTAG+R +D+IE EG
Sbjct: 250 TTRDVIQVKLDLGGFAVLLSDTAGIR-EANDLIEKEG 285
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 127/288 (44%), Gaps = 66/288 (22%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ +TIFALS+ GK GV+VIR+SGP A+ + Y +K + + A+L I +
Sbjct: 1 MHDTIFALSTVLGKSGVAVIRISGPQA-RAVAKLIGY--EKELEHKRATLATIYTLNREQ 57
Query: 86 VLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSE 145
VLDE + L+F + P + N + + + S+ I D ++E
Sbjct: 58 VLDEVILLFF-------------ASPHSFNGEDILEIH--------LHGSIAIINDVLAE 96
Query: 146 VVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAF 205
L + L +P FT K AF
Sbjct: 97 --LSKVTFLRIAEPGEFT--------------------------------------KIAF 116
Query: 206 FNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDF 265
+N K+DL + E L D + AET +Q+ A Q++G L Y++WR ++ L+ +EA IDF
Sbjct: 117 YNGKMDLVKAEGLADFLDAETSMQKIIAQKQLRGELSDTYNKWRTDLIGVLSQLEALIDF 176
Query: 266 SEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
ED+I E+ +L+ V L I H+ + GV I +GI VI
Sbjct: 177 PEDDIPEE-VLDWAAKTVQSLIEEINLHLR-GHDQGVSIMNGINIVIS 222
>gi|296417286|ref|XP_002838289.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634217|emb|CAZ82480.1| unnamed protein product [Tuber melanosporum]
Length = 608
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 128/353 (36%), Positives = 184/353 (52%), Gaps = 65/353 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVS-EVVLDEG-LCLWF 156
G+ ++V+RVSGP LN S+ P + + PR A+LR + P S + VLD G L L+F
Sbjct: 111 GRAAIAVVRVSGPACLNVYSSLC--PSRPLPTPRKATLRTLYRPNSPKEVLDPGALVLFF 168
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLP----GLRPAEPGEFSKRAFFNNKLDL 212
P PNS TGED E +HG A+I A+L +++ L +RPA PGEF++RAF NN+L L
Sbjct: 169 PAPNSHTGEDVLELHLHGGPAIIRAVLFSISTLSTPQLSIRPAGPGEFTRRAFTNNRLSL 228
Query: 213 TQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIE 272
Q EALGD + AETE QR+ ++ L + Y +WR+++L + +EA IDFSED+
Sbjct: 229 PQIEALGDTLSAETEQQRKLSVQATTSGLSRKYEQWRRMLLSARGELEAIIDFSEDQQF- 287
Query: 273 DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDN 332
D + S VV L ++ ++L ++D
Sbjct: 288 DTAPAEMCSNVVSLVQELKPMLQL-----------------------HVD---------- 314
Query: 333 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
N VR ++ +R GI ++G PN GKSSL+N + ++ +I
Sbjct: 315 --NAVRGEL--------------------LRGGISLALIGAPNAGKSSLLNRVVGREAAI 352
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT-SDIIETEGNLLEKNNQQ 444
V+ GTTRDV++ +DIGGY +L DTAGLR + IE EG K Q
Sbjct: 353 VSGEAGTTRDVVDLSVDIGGYMALLADTAGLRKAELAGEIEKEGMWRAKKRVQ 405
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 7 KAAKEKAVIFFSRRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQK 66
+A E A + I NTI+AL++ G+ ++V+RVSGP LN S+ P +
Sbjct: 80 RAKGEDARGMHTHGVEQGEIGNTIYALATASGRAAIAVVRVSGPACLNVYSSLC--PSRP 137
Query: 67 VPKPRYASLRNIVDPVS-KVVLDEG-LCLWFP 96
+P PR A+LR + P S K VLD G L L+FP
Sbjct: 138 LPTPRKATLRTLYRPNSPKEVLDPGALVLFFP 169
>gi|374293365|ref|YP_005040400.1| tRNA modification GTPase [Azospirillum lipoferum 4B]
gi|357425304|emb|CBS88191.1| tRNA modification GTPase [Azospirillum lipoferum 4B]
Length = 442
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 122/329 (37%), Positives = 169/329 (51%), Gaps = 69/329 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV+V+R+SGP+ +AL ++ P + PR A L + DP S LD+ L L F
Sbjct: 13 GRSGVAVVRISGPEAGSALAALTGRP---LPAPRRAVLTKLRDPRSGDALDDALVLRFTA 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E +HG AV++ ++ AL LPGLR AEPGEF++RAF N KLD
Sbjct: 70 PASFTGEDVVELHLHGGRAVVSGVIEALATLPGLRLAEPGEFTRRAFENGKLD------- 122
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
L EA D + E N
Sbjct: 123 -------------------------------------LTEAEAVADLIDAET------NA 139
Query: 279 VRSQVV-QLHGSIEKHIELSNKCGVRIRSGIKSVI--CLASVEAYIDFSEDEIIEDNILN 335
R Q + Q+ G++ R+ G + + LA +EA IDF+ED++ + +
Sbjct: 140 QRRQALRQMGGALG-----------RLYDGWRERLTRALAHIEADIDFAEDDL-PGGVAD 187
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
VR + L G I H++ + G R+R G+ IVG PN GKSSL+N L ++ +IV++
Sbjct: 188 AVRPVIAGLAGEIAAHLDDGGR-GERLREGLHIAIVGAPNAGKSSLLNALARRDAAIVSA 246
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLR 424
GTTRD+IE HLD+GGYPV+L DTAGLR
Sbjct: 247 RAGTTRDIIEVHLDLGGYPVVLADTAGLR 275
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TI+AL++ G+ GV+V+R+SGP+ +AL ++ P +P PR A L + DP S L
Sbjct: 3 TTIYALATAPGRSGVAVVRISGPEAGSALAALTGRP---LPAPRRAVLTKLRDPRSGDAL 59
Query: 88 DEGLCLWF 95
D+ L L F
Sbjct: 60 DDALVLRF 67
>gi|87198163|ref|YP_495420.1| tRNA modification GTPase TrmE [Novosphingobium aromaticivorans DSM
12444]
gi|123491120|sp|Q2GC37.1|MNME_NOVAD RecName: Full=tRNA modification GTPase MnmE
gi|87133844|gb|ABD24586.1| tRNA modification GTPase trmE [Novosphingobium aromaticivorans DSM
12444]
Length = 437
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 168/333 (50%), Gaps = 58/333 (17%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
G+ VIR+SGP AL S+A ++ PR A+L + DP LD + LW P P
Sbjct: 15 AGIGVIRISGPGAGAALSSLA----GRLPSPRRATLATLADPRDGTHLDRTMVLWLPGPA 70
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
+ TGEDC E +HG AVI A+ AL+ LPGLR A PGEF++RAF N ++DL + E L D
Sbjct: 71 TATGEDCAELHLHGGRAVIAAVEAALSSLPGLRRARPGEFTRRAFANGRIDLAEAEGLAD 130
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFS-EDEIIEDNILNTV 279
L+ AETELQR+ AL +G L + EWR +L+ A +EA +DFS ED++ + T
Sbjct: 131 LLSAETELQRRTALAMAEGALSREVDEWRTTLLQISARLEAALDFSDEDDVGAGD--GTQ 188
Query: 280 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRS 339
R+ ++ H + C S+ C S+ ++D E +++
Sbjct: 189 RASLLPPH--------FAADC--------ISLAC--SLNTWLDRPRAEPLKE-------- 222
Query: 340 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGT 399
G + V+ G PN GKS+L N L + + +I + PGT
Sbjct: 223 -------------------------GFRVVLAGPPNAGKSTLFNALVEHEAAITAAEPGT 257
Query: 400 TRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIE 432
TRD++ + G P +DTAGLR + IE
Sbjct: 258 TRDLLTHAAALDGVPFTFVDTAGLRDEGAGEIE 290
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ +TIFALSSG G+ VIR+SGP AL S+A ++P PR A+L + DP
Sbjct: 1 MTDTIFALSSGQPPAGIGVIRISGPGAGAALSSLA----GRLPSPRRATLATLADPRDGT 56
Query: 86 VLDEGLCLWFP 96
LD + LW P
Sbjct: 57 HLDRTMVLWLP 67
>gi|393770834|ref|ZP_10359311.1| tRNA modification GTPase TrmE [Novosphingobium sp. Rr 2-17]
gi|392723732|gb|EIZ81120.1| tRNA modification GTPase TrmE [Novosphingobium sp. Rr 2-17]
Length = 426
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 120/335 (35%), Positives = 166/335 (49%), Gaps = 66/335 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
++V+R+SGPD AL ++A + R AS R + P VLD L LWFP P+
Sbjct: 15 AAIAVVRLSGPDAGKALVALAG----PLPPARRASYRTLCVPRG-TVLDNALVLWFPGPH 69
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
+ TGED E +HG AV+ A AL +PGLRPAEPGEF++RAF N ++DL + E L D
Sbjct: 70 TATGEDLAELHLHGGRAVVAATEKALAAIPGLRPAEPGEFTRRAFTNGRIDLAEAEGLAD 129
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
L+ AETELQR A+ G L + S+WR +L + A+VEA +DFS+ ED+ +
Sbjct: 130 LLSAETELQRLGAIAMAGGALSRQVSDWRGRVLTASAAVEAALDFSD----EDDAADLSP 185
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
+ LH I + +EA++ VR +
Sbjct: 186 DTRLALHDVISE------------------------LEAWL---------------VRPR 206
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
L R G + V+ G PNVGKS+L N L + + +I GTT
Sbjct: 207 AEPL------------------REGFRVVLAGPPNVGKSTLFNALVEDEAAITAPTAGTT 248
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
RD+I + + I G P + +DTAGLR D IE G
Sbjct: 249 RDIITRAVAIDGVPFLFVDTAGLRDEVGDAIEAIG 283
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 21/168 (12%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ +TIFALSSG ++V+R+SGPD AL ++A +P R AS R + P
Sbjct: 1 MTDTIFALSSGSPPAAIAVVRLSGPDAGKALVALAG----PLPPARRASYRTLCVP-RGT 55
Query: 86 VLDEGLCLWFP-RHGKCG--VSVIRVSGPDTLNAL--KSMACYPDQKVSKPRYASLRNIV 140
VLD L LWFP H G ++ + + G + A K++A P + ++P + R
Sbjct: 56 VLDNALVLWFPGPHTATGEDLAELHLHGGRAVVAATEKALAAIPGLRPAEPGEFTRRAFT 115
Query: 141 DPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTK 188
+ ++ EGL + + E E Q G+IA+ GAL++
Sbjct: 116 NGRIDLAEAEGLA------DLLSAE--TELQRLGAIAMAG---GALSR 152
>gi|27375745|ref|NP_767274.1| tRNA modification GTPase TrmE [Bradyrhizobium japonicum USDA 110]
gi|81842005|sp|Q89WP4.1|MNME_BRAJA RecName: Full=tRNA modification GTPase MnmE
gi|27348883|dbj|BAC45899.1| tRNA modification GTPase [Bradyrhizobium japonicum USDA 110]
Length = 452
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 125/333 (37%), Positives = 183/333 (54%), Gaps = 65/333 (19%)
Query: 103 VSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSF 162
++V+RVSG L ++A K+ PR AS R + D + + D+ + LWFP P S
Sbjct: 20 IAVVRVSGAQAGLVLTTLAG----KLPAPRQASRRLLRDGTGQPI-DDAVVLWFPGPASA 74
Query: 163 TGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLI 222
TGED EF HG AV+ A+L A++ +P +R AEPGEF++RAF N KLDLT+ E L DLI
Sbjct: 75 TGEDVAEFHAHGGRAVLAALLAAISVIPNMRAAEPGEFTRRAFENGKLDLTEAEGLDDLI 134
Query: 223 QAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQ 282
A+T+ QR++AL Q++G L +WR+ I+E+ A +EA IDFS+ E ++ +R+
Sbjct: 135 HADTDRQRRQALRQLQGLLGNRARDWRERIIEASALIEAGIDFSD----EGDVPAELRAP 190
Query: 283 VVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVV 342
V+ ++ H+E+ ++V+
Sbjct: 191 AVKAIKAL--HVEI------------------------------------------TEVL 206
Query: 343 QLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRD 402
G E+ +R G+ I GEPNVGKS+LMN L ++ ++IV+ GTTRD
Sbjct: 207 AAQGHSER-----------LRDGMVVAIAGEPNVGKSTLMNQLARRDVAIVSPHAGTTRD 255
Query: 403 VIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
VIE LD+ GYPV ++DTAG+R T D +E EG
Sbjct: 256 VIEVQLDLDGYPVTVIDTAGIR-ETDDPVEQEG 287
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TIFALSSG ++V+RVSG L ++A K+P PR AS R + D + +
Sbjct: 6 QTIFALSSGRPPSAIAVVRVSGAQAGLVLTTLAG----KLPAPRQASRRLLRDGTGQPI- 60
Query: 88 DEGLCLWFP 96
D+ + LWFP
Sbjct: 61 DDAVVLWFP 69
>gi|401624382|gb|EJS42442.1| mss1p [Saccharomyces arboricola H-6]
Length = 525
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 178/363 (49%), Gaps = 77/363 (21%)
Query: 92 CLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKP-RYASLRNIVDPVS------ 144
L P + +++IR+SG + + C + P R A LRNI P S
Sbjct: 39 ALSTPANQNSAIAIIRISGSHSKYIYSQLVC---SNAAPPIRKAMLRNIYIPSSNNSNQL 95
Query: 145 ------EVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL------PGL 192
+++LD L L+F PNSFTGED E VHG AV++ IL A+ L +
Sbjct: 96 HHQEGKKILLDSSLLLYFQAPNSFTGEDILELHVHGGKAVVDGILKAIESLHDKSRGKDI 155
Query: 193 RPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLI 252
R A PG+FS+RAF N K DLTQ E + DLI +ETE QR+ AL G K L+ WR+ I
Sbjct: 156 RFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETETQRRSALSSFNGKNKILFDNWRKSI 215
Query: 253 LESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
LE +A + A IDF++D E + + + HG
Sbjct: 216 LEDMAQLTAIIDFADDNSQE------IDNTDMIFHG------------------------ 245
Query: 313 CLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVG 372
+EDN+ +R ++V +EK L + GIK V++G
Sbjct: 246 ----------------VEDNV-KRLRDEIVIFMRKVEKSTILQD--------GIKLVLLG 280
Query: 373 EPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIE 432
PNVGKSSL+N L SIV+ IPGTTRD I+ ++I GY VI+ DTAG+R +SD IE
Sbjct: 281 APNVGKSSLVNSLTNDDTSIVSDIPGTTRDSIDAMININGYKVIICDTAGIRGKSSDKIE 340
Query: 433 TEG 435
G
Sbjct: 341 ILG 343
>gi|86747518|ref|YP_484014.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris HaA2]
gi|123099260|sp|Q2J357.1|MNME_RHOP2 RecName: Full=tRNA modification GTPase MnmE
gi|86570546|gb|ABD05103.1| tRNA modification GTPase trmE [Rhodopseudomonas palustris HaA2]
Length = 460
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 116/335 (34%), Positives = 173/335 (51%), Gaps = 69/335 (20%)
Query: 103 VSVIRVSGPDTLNALKSM--ACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
++++RVSG + L ++ A P + V + R + V+ ++D+ + LWF P
Sbjct: 20 LAIVRVSGARARDVLAALTGALPPPRTVRRVR-------IRDVNHELIDDAVVLWFAAPA 72
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
S TGED EF +HG AV+ A++ AL +RPAEPGEF++RAF N KLDLT+ E L D
Sbjct: 73 SATGEDVAEFHIHGGRAVLAALVKALASFDDVRPAEPGEFTRRAFENGKLDLTEAEGLDD 132
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI A+TE QR+ A+ Q+ G L W R
Sbjct: 133 LIHADTEAQRRLAVRQLGGLLGDRARRW-------------------------------R 161
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
+Q+++ LA +EA IDF+++ ++ ++
Sbjct: 162 AQIIE---------------------------ALALIEAGIDFADEGDVQGELMAPALRT 194
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
+ LHG I + + K R+R G+ I G PNVGKS+L+N L +++++IV+ GTT
Sbjct: 195 IATLHGEIAEVLAAQGKS-ERLRDGLVVAIAGPPNVGKSTLINRLARREVAIVSPHAGTT 253
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
RDVIE LD+GGYPV L+DTAG+R + D +E EG
Sbjct: 254 RDVIEVQLDLGGYPVTLIDTAGIR-ESEDSVEQEG 287
>gi|254418996|ref|ZP_05032720.1| tRNA modification GTPase TrmE [Brevundimonas sp. BAL3]
gi|196185173|gb|EDX80149.1| tRNA modification GTPase TrmE [Brevundimonas sp. BAL3]
Length = 436
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 174/337 (51%), Gaps = 68/337 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ ++V+R+SGP AL ++ KPR AS+R++ + D+ L L F
Sbjct: 14 GRGAIAVMRLSGPGVDAALTALGA----TRLKPRMASVRDLAYAGDHI--DQALVLRFVA 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+S+TGED E +HG AV+ A GAL L G+RPAEPGEF++RAF N ++DL Q EA+
Sbjct: 68 PHSYTGEDSAELHLHGGRAVVEAASGALIAL-GVRPAEPGEFTRRAFQNGRMDLAQAEAV 126
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET Q ++AL Q+ G L E Y F D
Sbjct: 127 ADLIDAETAAQARQALGQLDGKLS-----------------ETYAGFRRD---------- 159
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LH LA VEA IDF DE + DN+ T
Sbjct: 160 ------LLH-------------------------ALALVEAEIDFP-DEDVPDNLARTAG 187
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ +L + + ++ + + G R+R G + V++GE N GKSSL N L +++ +IVT I G
Sbjct: 188 PVLDRLAEDLRRAVD-TGRRGERVRDGYRIVLIGETNAGKSSLFNALVEREAAIVTPIAG 246
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDV++ L IGGY V L DTAGLR ++D +E EG
Sbjct: 247 TTRDVLDADLVIGGYAVTLSDTAGLR-ESADPVEAEG 282
>gi|315045147|ref|XP_003171949.1| tRNA modification GTPase mss1 [Arthroderma gypseum CBS 118893]
gi|311344292|gb|EFR03495.1| tRNA modification GTPase mss1 [Arthroderma gypseum CBS 118893]
Length = 643
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 132/393 (33%), Positives = 199/393 (50%), Gaps = 85/393 (21%)
Query: 63 PDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMAC 122
P Q P+ R+AS P + L G+ +++IRVSGPD ++ K++
Sbjct: 74 PVQVSPQTRWASFFQDEKPTTIYALSTA-------SGRAAIAIIRVSGPDCISIYKALC- 125
Query: 123 YPDQKVSKPRYASLRNIVDPVSEV----VLDEG-LCLWFPKPNSFTGEDCCEFQVHGSIA 177
P++ + KPR+A+LR + +P V +LD G L FP PN+ TGED E VHGS A
Sbjct: 126 -PNRNLPKPRFAALRTLYEPGKPVSTNNILDSGALVFHFPAPNTVTGEDVLELHVHGSPA 184
Query: 178 VINAILGALTK--------LPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQ 229
VI +IL A+ K L +R AEPGEF++RAF N++LDL Q EALG+ + A+TE Q
Sbjct: 185 VIKSILSAIPKCASSGGVPLASIRYAEPGEFTRRAFLNDRLDLPQIEALGNTLAADTEQQ 244
Query: 230 RQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGS 289
R+ A+ L Y +W R Q++ G
Sbjct: 245 RRLAIRGTNDTLSTRYEQW-------------------------------RKQLLYARGE 273
Query: 290 IEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHG--- 346
+E A IDFSED+ ++++ + + S VQ+H
Sbjct: 274 LE---------------------------ALIDFSEDQHFDESVEDFISSVTVQVHNLLR 306
Query: 347 SIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEK 406
I HI+ ++K G +R+GIK ++G PN GKSSL+N + ++ +IV+S GTTRD+++
Sbjct: 307 QINLHIKNASK-GELLRNGIKVALLGAPNAGKSSLLNQIVGREAAIVSSEEGTTRDIVDV 365
Query: 407 HLDIGGYPVILLDTAGLRTTTSDIIET-EGNLL 438
+D+GG+ D AGLR+ S T +GN++
Sbjct: 366 GVDLGGWLCKFGDMAGLRSKLSQNHPTGQGNVV 398
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%), Gaps = 7/73 (9%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV--- 85
TI+ALS+ G+ +++IRVSGPD ++ K++ P++ +PKPR+A+LR + +P V
Sbjct: 94 TIYALSTASGRAAIAIIRVSGPDCISIYKALC--PNRNLPKPRFAALRTLYEPGKPVSTN 151
Query: 86 -VLDEG-LCLWFP 96
+LD G L FP
Sbjct: 152 NILDSGALVFHFP 164
>gi|304392709|ref|ZP_07374649.1| tRNA modification GTPase TrmE [Ahrensia sp. R2A130]
gi|303295339|gb|EFL89699.1| tRNA modification GTPase TrmE [Ahrensia sp. R2A130]
Length = 429
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 126/334 (37%), Positives = 172/334 (51%), Gaps = 65/334 (19%)
Query: 102 GVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNS 161
GV+VIR+SGP L +K++ + +PR A+L + V LDE L L FP+P S
Sbjct: 15 GVAVIRLSGPGALTTVKALT----GRSLQPRKATLCRLSSDDGRV-LDEALVLTFPEPAS 69
Query: 162 FTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDL 221
FTGEDC E HG A ++A+L L LRPAEPGEFS+RAF N KLDLTQ E L DL
Sbjct: 70 FTGEDCAELHCHGGCATVDAVLTELVTFDDLRPAEPGEFSRRAFANGKLDLTQAEGLSDL 129
Query: 222 IQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRS 281
I A+TE Q R L LE
Sbjct: 130 IVAQTESQ-------------------RLLALE--------------------------- 143
Query: 282 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQV 341
Q+ G + + E K +R+R A EA IDFS++ + D + ++V
Sbjct: 144 ---QMQGGLRELYEGWRKDLIRVR---------AFFEASIDFSDEGDVPDEAAAELWNEV 191
Query: 342 VQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTR 401
+ +I+ H++ N+ G IR G + ++G PN GKSSL+N L ++ I+IV GTTR
Sbjct: 192 AAIRTAIDNHLD-DNRSGEIIRDGFRVALIGPPNAGKSSLLNALAKRDIAIVDDEAGTTR 250
Query: 402 DVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
DV+E +D+GG+ V L DTAG+R T + +E EG
Sbjct: 251 DVLETVIDLGGHMVRLFDTAGMR-NTENRVEQEG 283
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 30/140 (21%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFALSSG GV+VIR+SGP L +K++ + +PR A+L + + VL
Sbjct: 2 DTIFALSSGSLPSGVAVIRLSGPGALTTVKALT----GRSLQPRKATLCRLSSDDGR-VL 56
Query: 88 DEGLCLWFPR--------------HGKCGVSVIRVSGPDTLNA-LKSMACYPDQKVSKPR 132
DE L L FP HG C T++A L + + D + ++P
Sbjct: 57 DEALVLTFPEPASFTGEDCAELHCHGGCA----------TVDAVLTELVTFDDLRPAEPG 106
Query: 133 YASLRNIVDPVSEVVLDEGL 152
S R + ++ EGL
Sbjct: 107 EFSRRAFANGKLDLTQAEGL 126
>gi|320170767|gb|EFW47666.1| tRNA modification GTPase TrmE [Capsaspora owczarzaki ATCC 30864]
Length = 585
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 125/341 (36%), Positives = 178/341 (52%), Gaps = 69/341 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV+V+R+SG A++ M QK PR A L +V P ++ +D+ + LWFP
Sbjct: 145 GRAGVAVVRLSGRAAGIAIERMTGSA-QKSKTPRQAHLCRLVHPTTKEHIDDAIVLWFPG 203
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED EF +HG ++I A+ AL++LP R A+ GEF+KRAFFN K
Sbjct: 204 PRSFTGEDVAEFHIHGGRSIIEALFEALSELPDTRMADAGEFTKRAFFNGK--------- 254
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
ID +E E + D I
Sbjct: 255 --------------------------------------------IDLTEVEGLADLINAE 270
Query: 279 VRSQ----VVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
R+Q + QL+G++ + E R+ +KS +A VE IDF+E E IE+N++
Sbjct: 271 TRAQRQQALRQLNGAMSRTFEEWR------RTILKS---MAHVEGNIDFAETEDIEENVM 321
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
+ S V L I + S + G R+RSG+ IVG PNVGKSSL+N + Q+ +IV+
Sbjct: 322 QSAISAVQTLRHEIAASLNDSRR-GERLRSGVSVAIVGAPNVGKSSLLNIMSQRPTAIVS 380
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
+ GTTRD++E LDIGGYP++L DTAG+R + + IE EG
Sbjct: 381 ATAGTTRDILEVPLDIGGYPLLLCDTAGMRDSDEE-IEQEG 420
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 142/286 (49%), Gaps = 63/286 (22%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
+++I+AL++ G+ GV+V+R+SG A++ M QK PR A L +V P +K
Sbjct: 134 RDSIYALATAPGRAGVAVVRLSGRAAGIAIERMTGSA-QKSKTPRQAHLCRLVHPTTKEH 192
Query: 87 LDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEV 146
+D+ + LWFP GP + + + V++ R+I++ + E
Sbjct: 193 IDDAIVLWFP-------------GPRS---------FTGEDVAEFHIHGGRSIIEALFEA 230
Query: 147 VLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFF 206
+ ++LP R A+ GEF+KRAFF
Sbjct: 231 L---------------------------------------SELPDTRMADAGEFTKRAFF 251
Query: 207 NNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFS 266
N K+DLT+ E L DLI AET QRQ+AL Q+ G + + + EWR+ IL+S+A VE IDF+
Sbjct: 252 NGKIDLTEVEGLADLINAETRAQRQQALRQLNGAMSRTFEEWRRTILKSMAHVEGNIDFA 311
Query: 267 EDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
E E IE+N++ + S V L I + S + G R+RSG+ I
Sbjct: 312 ETEDIEENVMQSAISAVQTLRHEIAASLNDSRR-GERLRSGVSVAI 356
>gi|384214322|ref|YP_005605485.1| tRNA modification GTPase [Bradyrhizobium japonicum USDA 6]
gi|354953218|dbj|BAL05897.1| tRNA modification GTPase [Bradyrhizobium japonicum USDA 6]
Length = 452
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 182/333 (54%), Gaps = 65/333 (19%)
Query: 103 VSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSF 162
++V+RVSG L ++A PR AS R + D + + D+ + LWFP P S
Sbjct: 20 IAVVRVSGSQAGLVLTTLAGSQ----PAPRQASRRLLRDGAGQPI-DDAVVLWFPGPASA 74
Query: 163 TGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLI 222
TGED EF VHG AV+ A+L A++ +P R AEPGEF++RAF N KLDLT+ E L DLI
Sbjct: 75 TGEDVAEFHVHGGRAVLAALLAAISLIPNTRAAEPGEFTRRAFENGKLDLTEAEGLDDLI 134
Query: 223 QAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQ 282
A+T+ QR++AL Q++G L +WR+ I+E+ A +EA IDFS+ E ++ +R+
Sbjct: 135 HADTDRQRRQALRQLQGLLGDRARDWRERIIEASALIEAGIDFSD----EGDVPAELRAP 190
Query: 283 VVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVV 342
V+ IK++ DEI E V+
Sbjct: 191 AVK---------------------AIKAL-------------HDEITE----------VL 206
Query: 343 QLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRD 402
G E R+R G+ I GEPNVGKS+L+N L +++++IV+ GTTRD
Sbjct: 207 AAQGHSE-----------RLRDGLVVAIAGEPNVGKSTLINQLSRREVAIVSPYAGTTRD 255
Query: 403 VIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
VIE LD+ GYPV ++DTAG+R T D +E EG
Sbjct: 256 VIEVQLDLDGYPVTVIDTAGIR-ETDDPVEQEG 287
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TIFALSSG ++V+RVSG L ++A P PR AS R + D + +
Sbjct: 6 QTIFALSSGRAPSAIAVVRVSGSQAGLVLTTLAG----SQPAPRQASRRLLRDGAGQPI- 60
Query: 88 DEGLCLWFP 96
D+ + LWFP
Sbjct: 61 DDAVVLWFP 69
>gi|299471091|emb|CBN78950.1| TrmE, organellal GTPase involved in tRNA modification [Ectocarpus
siliculosus]
Length = 790
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 140/418 (33%), Positives = 196/418 (46%), Gaps = 94/418 (22%)
Query: 27 KNTIFALSSGH-GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
++TIFAL++G+ G GV+V+R+SGP + L+++ A+L ++ +
Sbjct: 195 EDTIFALATGNAGPAGVAVVRISGPLSAQVLQALTSA----------ANLSSVTAAEASA 244
Query: 86 VLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSE 145
D G+ G R P +P R A +R + DP +
Sbjct: 245 GGDAGVAASAAPAVVNGGGAGRRLPP-----------FP-----AARRAVVRRLYDPATG 288
Query: 146 VVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAIL------GALTKLPGLRPAEPGE 199
+LDE L LW P P SFTGED E HGS AVIN +L GA + + +R AE GE
Sbjct: 289 DLLDEALVLWMPGPRSFTGEDTVELHTHGSRAVINGVLDALAGMGAASGMRRVRLAERGE 348
Query: 200 FSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASV 259
F++RA+ N ++DLT E L DLI A+T QR++AL KQ+ R +
Sbjct: 349 FTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQAL-------KQMGGALRDM-------- 393
Query: 260 EAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEA 319
Y ++ QL G CLA EA
Sbjct: 394 --YEEWRH-----------------QLKG------------------------CLAHAEA 410
Query: 320 YIDFSEDE--IIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVG 377
IDF +DE + D + +V L I++H+ + G +RSG++ IVG PN G
Sbjct: 411 VIDFGDDEEDVGGDAAFAAMMPRVRGLAAEIDRHLRDGGR-GEIVRSGVRVAIVGPPNAG 469
Query: 378 KSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
KSSL+N L + +IV+ + GTTRDV+E +DI G PV L DTAGL T D IE EG
Sbjct: 470 KSSLLNLLAARPAAIVSPVAGTTRDVVEVQMDIAGLPVTLSDTAGLPKATDDEIEREG 527
>gi|254995465|ref|ZP_05277655.1| tRNA modification GTPase TrmE [Anaplasma marginale str.
Mississippi]
Length = 411
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 113/312 (36%), Positives = 172/312 (55%), Gaps = 65/312 (20%)
Query: 130 KPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL 189
+ R A+ + + D + + D+ + L+FP P SFTGED E QVHGS+AVI + L +
Sbjct: 11 RSRVATCKTLYDKKRQPI-DQAVVLYFPGPGSFTGEDVVELQVHGSLAVIRLLFEELQTV 69
Query: 190 PGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWR 249
R AEPGEFS RAF N K+DLT+ E + DL+ +ETE Q L+Q +++
Sbjct: 70 --FRIAEPGEFSLRAFLNGKIDLTRAEGIADLVNSETEAQ-----------LRQAFAQSS 116
Query: 250 QLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK 309
+ + + RS +V +
Sbjct: 117 GFL--------------------ERLYEEWRSSLVDI----------------------- 133
Query: 310 SVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSV 369
L+ +EAYIDF +D + IL +V +V +LH S+E+H++ ++ G R+R G++
Sbjct: 134 ----LSDLEAYIDFPDD--VSPQILRSVHDRVKELHNSLERHLDDGHR-GERLRHGMRVA 186
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
I+G+PNVGKS+L N L ++ ++IV+ PGTTRDV+E H+DIGGYP I++DTAG+R +T D
Sbjct: 187 ILGKPNVGKSTLFNHLARRDMAIVSEYPGTTRDVLEAHVDIGGYPFIVVDTAGIREST-D 245
Query: 430 IIETEGNLLEKN 441
+E EG + K+
Sbjct: 246 FVEREGIMRAKS 257
>gi|217978725|ref|YP_002362872.1| tRNA modification GTPase TrmE [Methylocella silvestris BL2]
gi|217504101|gb|ACK51510.1| tRNA modification GTPase TrmE [Methylocella silvestris BL2]
Length = 448
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 111/332 (33%), Positives = 167/332 (50%), Gaps = 63/332 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ V+++R++GP + +K++A ++ PR A+L DP + +D+GL ++F
Sbjct: 25 GRAAVAILRLTGPASGAIVKAVAG----RLPPPRVATLATFRDPATGEAIDQGLVIFFQG 80
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P S+TGED EF +HG AV+ ++ A+ G R AE GEFS+RA N KLDL Q E +
Sbjct: 81 PRSYTGEDSAEFHIHGGRAVVAGLIAAIGSFEGARAAEAGEFSRRALMNGKLDLGQIEGI 140
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
GDL+ AET QR++AL Q G L + W
Sbjct: 141 GDLVAAETASQRRQALRQTAGMLGRRAGGW------------------------------ 170
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R+ +++ I I+ S++ V + +A V
Sbjct: 171 -RAALIEASARIAADIDFSDEGDVAAAPALDIAPIIAPV--------------------- 208
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ +L G E H + + G RIR G+ VI G PN GKS+L+N L ++ ++IV+ G
Sbjct: 209 --LAELRG--ELH---AARAGERIREGLTIVIAGPPNAGKSTLLNALARRDVAIVSKHAG 261
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+E LD+GGY +L+DTAGLR TT +
Sbjct: 262 TTRDVLEVELDLGGYAAVLIDTAGLRETTDPV 293
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 47/72 (65%), Gaps = 6/72 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFA++SG G+ V+++R++GP + +K++A ++P PR A+L DP + +
Sbjct: 15 DTIFAVASGAGRAAVAILRLTGPASGAIVKAVAG----RLPPPRVATLATFRDPATGEAI 70
Query: 88 DEGLCLWF--PR 97
D+GL ++F PR
Sbjct: 71 DQGLVIFFQGPR 82
>gi|302306610|ref|NP_983009.3| ABR063Cp [Ashbya gossypii ATCC 10895]
gi|299788599|gb|AAS50833.3| ABR063Cp [Ashbya gossypii ATCC 10895]
gi|374106212|gb|AEY95122.1| FABR063Cp [Ashbya gossypii FDAG1]
Length = 493
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 131/355 (36%), Positives = 176/355 (49%), Gaps = 72/355 (20%)
Query: 92 CLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVS---EVVL 148
L P K ++V+RVSG T L ++ PR ASLRN+ P S +V L
Sbjct: 23 ALSTPMGQKSAIAVVRVSG--THARLVYEKLTDSKRPPTPRRASLRNLYSPQSAPEKVFL 80
Query: 149 DEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG------LRPAEPGEFSK 202
D L L+F +P +FTGED E VHG AV+ +L A+ L +R AE GEFS+
Sbjct: 81 DSALTLFFEQPGTFTGEDILELHVHGGKAVVAGVLDAIGALHDESAGVQIRYAEAGEFSR 140
Query: 203 RAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAY 262
RAF N + DLT+ E +G+LI AETE QR+ A+ +G + L++ WRQ I+
Sbjct: 141 RAFQNGRFDLTEIEGIGELIDAETETQRRSAISSFRGQNRLLFAGWRQQIV--------- 191
Query: 263 IDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYID 322
DNI A V A ID
Sbjct: 192 ----------DNI---------------------------------------AQVAAIID 202
Query: 323 FSEDEIIED--NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSS 380
F +D I+D IL VR V L + +E + + ++SGI+ ++G PN GKSS
Sbjct: 203 FGDDTEIQDIDAILEGVRCSVKALRREVADFVERVTRSTI-LQSGIRLSVLGAPNAGKSS 261
Query: 381 LMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
L+N + + SIV+SIPGTTRD I+ LDI GY VIL DTAG+R ++D IE G
Sbjct: 262 LVNCITKDDTSIVSSIPGTTRDAIDVPLDINGYKVILTDTAGVRAHSTDPIELIG 316
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 29 TIFALSSGHG-KCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS---K 84
TI+ALS+ G K ++V+RVSG T L ++ P PR ASLRN+ P S K
Sbjct: 20 TIYALSTPMGQKSAIAVVRVSG--THARLVYEKLTDSKRPPTPRRASLRNLYSPQSAPEK 77
Query: 85 VVLDEGLCLWFPRHG 99
V LD L L+F + G
Sbjct: 78 VFLDSALTLFFEQPG 92
>gi|378581723|ref|ZP_09830367.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Pantoea
stewartii subsp. stewartii DC283]
gi|377815637|gb|EHT98748.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Pantoea
stewartii subsp. stewartii DC283]
Length = 454
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSGP + + K+ KPRYA + D V LD+G+ LWFP
Sbjct: 15 GRGGVGILRVSGPQAAEVARQVLG----KLPKPRYADYLSFNDSDGSV-LDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRIVALPGLRIAQPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + A++ ++G ++ + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSAVNSLQGAFSVRVNQLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + + +I D L+ VR
Sbjct: 187 ---------GKIEGQL-------------------------------NAVIRD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++RVSGP + + K+PKPRYA + D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRVSGPQAAEVARQVLG----KLPKPRYADYLSFNDS-DGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVALPGLRIAQPGEFSERAFLN 118
>gi|320581325|gb|EFW95546.1| hypothetical protein HPODL_2880 [Ogataea parapolymorpha DL-1]
Length = 479
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 123/341 (36%), Positives = 177/341 (51%), Gaps = 65/341 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
+ ++V+R++GP +++ +++ ++ KPR A+L + P ++V+LDE + L+F
Sbjct: 28 ARSAIAVVRITGPSSVSIYRALTA---RQQPKPRIATLAKLYHPKTKVILDEAIVLYFKG 84
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKL--PG--LRPAEPGEFSKRAFFNNKLDLTQ 214
PNS+TGED E +HG AVI I+ +L L P +RPAEPG+FSK+AF N K+DLTQ
Sbjct: 85 PNSYTGEDMLELHLHGGTAVIKCIMESLELLHTPANPIRPAEPGDFSKKAFQNGKMDLTQ 144
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
E + LI AETE QR +L MKG K+L+ WR+ IL + A + IDF E+ IE
Sbjct: 145 AEGINSLIHAETERQRLLSLTSMKGETKELFHHWREQILNTYALITTLIDFGEEHDIE-- 202
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
++ QL R S IK++ V Y++
Sbjct: 203 -------EIGQLFE--------------RAESDIKTL--ETEVRGYLE------------ 227
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
RSQ + G K + G PN GKSSL+N + + +IV+
Sbjct: 228 RVQRSQTLM--------------------DGFKITLSGPPNAGKSSLLNIIANEDRAIVS 267
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I GTTRD IE LDI GY V++ DTAG+R + IE EG
Sbjct: 268 EIEGTTRDSIEVPLDINGYKVVIGDTAGIRNAENQ-IEQEG 307
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 50/77 (64%), Gaps = 4/77 (5%)
Query: 19 RRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNI 78
R S +A+ T++ALS+ + ++V+R++GP +++ +++ ++ PKPR A+L +
Sbjct: 10 RHFSSVALP-TVYALSTYPARSAIAVVRITGPSSVSIYRALTA---RQQPKPRIATLAKL 65
Query: 79 VDPVSKVVLDEGLCLWF 95
P +KV+LDE + L+F
Sbjct: 66 YHPKTKVILDEAIVLYF 82
>gi|149036122|gb|EDL90788.1| rCG38694, isoform CRA_a [Rattus norvegicus]
Length = 280
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 99/215 (46%), Positives = 135/215 (62%), Gaps = 3/215 (1%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+C ++VIR SGP + AL+S+ ++ R A LR + P S LD L LWFP
Sbjct: 43 QGRCAIAVIRTSGPASGLALRSLTAL--REPPPARSACLRLLRHPCSGEPLDRSLVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC E VHG AV++ +L AL +PGLRPA+ GEF++RAF + KL LT+ E
Sbjct: 101 GPQSFTGEDCMELHVHGGPAVVSGVLQALGSVPGLRPAKAGEFTRRAFAHGKLSLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L QL W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELSQLCQGWAKTLTKALAHVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
V V L ++ H+ + + G R+RSG V+
Sbjct: 221 QVDRDVRALEVALSSHLRDARR-GQRLRSGANVVV 254
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 13 AVIFFSRRCS----HLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVP 68
A + RCS L +TIFALSSG G+C ++VIR SGP + AL+S+ ++ P
Sbjct: 15 APLRLCARCSTGAESLVPGSTIFALSSGQGRCAIAVIRTSGPASGLALRSLTAL--REPP 72
Query: 69 KPRYASLRNIVDPVSKVVLDEGLCLWFP 96
R A LR + P S LD L LWFP
Sbjct: 73 PARSACLRLLRHPCSGEPLDRSLVLWFP 100
>gi|197106988|ref|YP_002132365.1| tRNA modification GTPase TrmE [Phenylobacterium zucineum HLK1]
gi|254811489|sp|B4RD04.1|MNME_PHEZH RecName: Full=tRNA modification GTPase MnmE
gi|196480408|gb|ACG79936.1| thiophene and furan oxidation protein ThdF [Phenylobacterium
zucineum HLK1]
Length = 445
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 173/337 (51%), Gaps = 67/337 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ V+V+RVSGP T A++++A + +PR AS+R + D +D+ L LWFP
Sbjct: 13 GRAAVAVVRVSGPRTQTAVRTLAG----DLPEPRRASVRRLFD-ADGGEIDQALVLWFPG 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P S+TGED EF VHG AV A++ AL L GLR AEPGEF++RAF N KLDL Q E +
Sbjct: 68 PGSYTGEDAAEFHVHGGTAVTGALVEALAGL-GLRLAEPGEFTRRAFENGKLDLAQAEGV 126
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI +ETE QR
Sbjct: 127 ADLIDSETEGQR------------------------------------------------ 138
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R + QL G + ++ R R + + L EA +DF ++E+ D + R
Sbjct: 139 -RQALEQLGGRL-------SQVQARWREALTEALAL--FEAAVDFPDEEVPAD-VAARAR 187
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L IE + + G R+R G + +VG PN GKS+L+N L ++ +IVT+ PG
Sbjct: 188 PVLETLAAEIEAAAADAAR-GERVREGFRIALVGAPNAGKSTLLNALAGREAAIVTATPG 246
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE + + GY V++ DTAGLR T+D IE EG
Sbjct: 247 TTRDVIEVPMVLAGYKVLMADTAGLR-DTADEIEAEG 282
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 112/248 (45%), Gaps = 67/248 (27%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ +TIFA ++ G+ V+V+RVSGP T A++++A +P+PR AS+R + D
Sbjct: 1 MSDTIFAPATAPGRAAVAVVRVSGPRTQTAVRTLAG----DLPEPRRASVRRLFD-ADGG 55
Query: 86 VLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSE 145
+D+ L LWFP GP Y + ++ + + E
Sbjct: 56 EIDQALVLWFP-------------GP---------GSYTGEDAAEFHVHGGTAVTGALVE 93
Query: 146 VVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAF 205
+ GL L +P FT +RAF
Sbjct: 94 ALA--GLGLRLAEPGEFT--------------------------------------RRAF 113
Query: 206 FNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDF 265
N KLDL Q E + DLI +ETE QR++AL Q+ G L Q+ + WR+ + E+LA EA +DF
Sbjct: 114 ENGKLDLAQAEGVADLIDSETEGQRRQALEQLGGRLSQVQARWREALTEALALFEAAVDF 173
Query: 266 SEDEIIED 273
++E+ D
Sbjct: 174 PDEEVPAD 181
>gi|315122032|ref|YP_004062521.1| tRNA modification GTPase TrmE [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495434|gb|ADR52033.1| tRNA modification GTPase TrmE [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 440
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 128/334 (38%), Positives = 174/334 (52%), Gaps = 64/334 (19%)
Query: 102 GVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNS 161
+SVIR+SG + + +K PR ASLR +LD+GL + FP P S
Sbjct: 19 AISVIRLSGSSCFQVCEFIC---KKKNPLPRVASLR-FFYGFDGRILDKGLLILFPSPKS 74
Query: 162 FTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDL 221
FTGEDC EF VHG I+V++ IL L K+P LR A PGEFS+RAF N K+DL + E+L DL
Sbjct: 75 FTGEDCAEFHVHGGISVVDGILEELAKMPNLRRANPGEFSRRAFENGKIDLLEAESLADL 134
Query: 222 IQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRS 281
I +ETE+QR+ + M+G +L + + I N L VRS
Sbjct: 135 ISSETEMQRRLS---MEGMSGKLSNLYNGWI---------------------NKLTYVRS 170
Query: 282 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQV 341
+EA +DFS++E ++ + + +
Sbjct: 171 ----------------------------------FIEADLDFSDEEDVQKFSSKEIWNDI 196
Query: 342 VQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTR 401
+ L I HI K G IR+G K VI+G N GKSSL+N L ++ ++IVT +PGTTR
Sbjct: 197 LLLKDEISSHIS-QGKLGEIIRNGYKIVILGNSNAGKSSLLNALAKRDVAIVTDVPGTTR 255
Query: 402 DVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
DVI LD+GGY V + DTAG+R T S I+E EG
Sbjct: 256 DVITIDLDLGGYLVKISDTAGIRETNS-IVEKEG 288
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 55/123 (44%), Gaps = 23/123 (18%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
K TIFALSSG +SVIR+SG + + +K P PR ASLR + +
Sbjct: 5 KKTIFALSSGILPSAISVIRLSGSSCFQVCEFIC---KKKNPLPRVASLRFFYGFDGR-I 60
Query: 87 LDEGLCLWFPR------------HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYA 134
LD+GL + FP H G+SV+ L+ +A P+ + + P
Sbjct: 61 LDKGLLILFPSPKSFTGEDCAEFHVHGGISVVD-------GILEELAKMPNLRRANPGEF 113
Query: 135 SLR 137
S R
Sbjct: 114 SRR 116
>gi|83594953|ref|YP_428705.1| tRNA modification GTPase TrmE [Rhodospirillum rubrum ATCC 11170]
gi|386351718|ref|YP_006049966.1| tRNA modification GTPase TrmE [Rhodospirillum rubrum F11]
gi|123525454|sp|Q2RN77.1|MNME_RHORT RecName: Full=tRNA modification GTPase MnmE
gi|83577867|gb|ABC24418.1| tRNA modification GTPase trmE [Rhodospirillum rubrum ATCC 11170]
gi|346720154|gb|AEO50169.1| tRNA modification GTPase TrmE [Rhodospirillum rubrum F11]
Length = 455
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 173/346 (50%), Gaps = 69/346 (19%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMAC-YPDQKVSKPRYASLRNIVDPVSEV-------VLD 149
G+ GV+++R+SGP AL +A P+ + + + VLD
Sbjct: 13 RGRAGVAIVRLSGPRAATALTLLAGRLPEARRATRAALRSPPSGPGPTGPGPEEGGEVLD 72
Query: 150 EGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNK 209
+ L LWFP P SFTGED E +HG AV+ A+LGAL LPGLRPAE GEFS+RAF N +
Sbjct: 73 DALVLWFPAPASFTGEDVAELHIHGGRAVLAAVLGALGDLPGLRPAEAGEFSRRAFLNGR 132
Query: 210 LDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDE 269
LDLT EAL DL+ AET+ QR++AL Q G L +LY WR+ + LA +EA +DF DE
Sbjct: 133 LDLTAAEALADLVDAETQAQRRQALRQADGALVRLYEGWRKTGIGLLAHLEAVLDFP-DE 191
Query: 270 IIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEII 329
+ + VR + L ++ H++ ++ G R+R G++ + A
Sbjct: 192 DLPPEVETAVRGGIGALADALAGHLDDRHR-GERLRDGLQVAVVGAP------------- 237
Query: 330 EDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389
N +S +V N+ R + I S I G
Sbjct: 238 -----NVGKSSLV-------------NRL-ARREAAIVSDIAG----------------- 261
Query: 390 ISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD++E LD+GGYP+++ DTAGLR TSD IE EG
Sbjct: 262 ---------TTRDIVEVALDLGGYPLVVADTAGLR-ETSDGIEAEG 297
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 16/81 (19%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPK------------PRYASL 75
+TIFA ++ G+ GV+++R+SGP AL +A ++P+ P
Sbjct: 4 DTIFAPATARGRAGVAIVRLSGPRAATALTLLAG----RLPEARRATRAALRSPPSGPGP 59
Query: 76 RNIVDPVSKVVLDEGLCLWFP 96
VLD+ L LWFP
Sbjct: 60 TGPGPEEGGEVLDDALVLWFP 80
>gi|326484082|gb|EGE08092.1| tRNA modification GTPase [Trichophyton equinum CBS 127.97]
Length = 594
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 130/377 (34%), Positives = 189/377 (50%), Gaps = 84/377 (22%)
Query: 68 PKPRYASLRNIVDPVSKVVLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQK 127
P+ R+AS P + L G+ +++IR+SGPD + K++ PD+K
Sbjct: 31 PQRRWASFFQDEKPTTIYALSTA-------PGRAAIAIIRISGPDCIPIYKALC--PDRK 81
Query: 128 VSKPRYASLRNIVDP----VSEVVLDEG-LCLWFPKPNSFTGEDCCEFQVHGSIAVINAI 182
+ KPR+A+LR I +P ++ LD G L FP PN+ TGED E VHGS AVI +I
Sbjct: 82 LPKPRFAALRTIYEPGKPLSADNALDSGALVFHFPAPNTVTGEDVLELHVHGSPAVIKSI 141
Query: 183 LGALTKLPG--------LRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKAL 234
L A+ K G +R AEPGEF++RAF N++LDL Q EALG+ + A+TE QR+ A+
Sbjct: 142 LSAIPKCAGPGDAPSASIRYAEPGEFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAI 201
Query: 235 HQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHI 294
L Y +W R Q++ G +E
Sbjct: 202 RGTNDALSTRYEQW-------------------------------RKQLLYARGELE--- 227
Query: 295 ELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIE---DNILNTVRSQVVQLHGSIEKH 351
A IDFSED+ + D+ +++V QV L I H
Sbjct: 228 ------------------------ALIDFSEDQHFDESVDDFISSVTGQVDSLLHQINLH 263
Query: 352 IELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG 411
I+ ++K G +RSGIK ++G PN GKSSL+N + + +IV+S GTTRD+++ +D+G
Sbjct: 264 IKNASK-GELLRSGIKVALLGAPNAGKSSLLNQIVGRDAAIVSSEEGTTRDIVDVGVDLG 322
Query: 412 GYPVILLDTAGLRTTTS 428
G+ D AGLR+ S
Sbjct: 323 GWLCKFGDMAGLRSKLS 339
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 150/293 (51%), Gaps = 70/293 (23%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TI+ALS+ G+ +++IR+SGPD + K++ PD+K+PKPR+A+LR I +P +
Sbjct: 45 TTIYALSTAPGRAAIAIIRISGPDCIPIYKALC--PDRKLPKPRFAALRTIYEPGKPLSA 102
Query: 88 DEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVV 147
D NAL S A
Sbjct: 103 D--------------------------NALDSGA-------------------------- 110
Query: 148 LDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG--------LRPAEPGE 199
L FP PN+ TGED E VHGS AVI +IL A+ K G +R AEPGE
Sbjct: 111 ----LVFHFPAPNTVTGEDVLELHVHGSPAVIKSILSAIPKCAGPGDAPSASIRYAEPGE 166
Query: 200 FSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASV 259
F++RAF N++LDL Q EALG+ + A+TE QR+ A+ L Y +WR+ +L + +
Sbjct: 167 FTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDALSTRYEQWRKQLLYARGEL 226
Query: 260 EAYIDFSEDEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK 309
EA IDFSED+ + D+ +++V QV L I HI+ ++K G +RSGIK
Sbjct: 227 EALIDFSEDQHFDESVDDFISSVTGQVDSLLHQINLHIKNASK-GELLRSGIK 278
>gi|444726657|gb|ELW67181.1| tRNA modification GTPase GTPBP3, mitochondrial [Tupaia chinensis]
Length = 478
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 128/338 (37%), Positives = 169/338 (50%), Gaps = 75/338 (22%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CG++VIR SGP + +AL S+ D + R ASLR + DP S LD L LWFP
Sbjct: 43 QGRCGIAVIRTSGPASSHALWSLTAPRD--LPPARKASLRLLSDPRSREPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF + KL LT+ E
Sbjct: 101 GPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLSLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR+ + +LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIHAETEAQRRPFFPVAS-------------LRVALAHVEAYIDFGEDDNLEEGVLE 207
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
S+V L ++ H+ + + G R+RSG V+ N
Sbjct: 208 QADSEVRALEVALGAHLRDARR-GQRLRSGAHVVVT------------------GPPNAG 248
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K S++ EP
Sbjct: 249 KSSLVNL---------LSQKP--------VSIVSPEP----------------------- 268
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 269 GTTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 305
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TIFALSSG G+CG++VIR SGP + +AL S+ D +P R ASLR + DP S+ L
Sbjct: 34 TTIFALSSGQGRCGIAVIRTSGPASSHALWSLTAPRD--LPPARKASLRLLSDPRSREPL 91
Query: 88 DEGLCLWFP 96
D L LWFP
Sbjct: 92 DRALVLWFP 100
>gi|326476482|gb|EGE00492.1| mitochondrial GTPase [Trichophyton tonsurans CBS 112818]
Length = 594
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 130/377 (34%), Positives = 189/377 (50%), Gaps = 84/377 (22%)
Query: 68 PKPRYASLRNIVDPVSKVVLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQK 127
P+ R+AS P + L G+ +++IR+SGPD + K++ PD+K
Sbjct: 31 PQRRWASFFQDEKPTTIYALSTA-------PGRAAIAIIRISGPDCIPIYKALC--PDRK 81
Query: 128 VSKPRYASLRNIVDP----VSEVVLDEG-LCLWFPKPNSFTGEDCCEFQVHGSIAVINAI 182
+ KPR+A+LR I +P ++ LD G L FP PN+ TGED E VHGS AVI +I
Sbjct: 82 LPKPRFAALRTIYEPGKPLSADNALDSGALVFHFPAPNTVTGEDVLELHVHGSPAVIKSI 141
Query: 183 LGALTKLPG--------LRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKAL 234
L A+ K G +R AEPGEF++RAF N++LDL Q EALG+ + A+TE QR+ A+
Sbjct: 142 LSAIPKCAGPGDAPSASIRYAEPGEFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAI 201
Query: 235 HQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHI 294
L Y +W R Q++ G +E
Sbjct: 202 RGTNDALSTRYEQW-------------------------------RKQLLYARGELE--- 227
Query: 295 ELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIE---DNILNTVRSQVVQLHGSIEKH 351
A IDFSED+ + D+ +++V QV L I H
Sbjct: 228 ------------------------ALIDFSEDQHFDESVDDFISSVTGQVDSLLHQINLH 263
Query: 352 IELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG 411
I+ ++K G +RSGIK ++G PN GKSSL+N + + +IV+S GTTRD+++ +D+G
Sbjct: 264 IKNASK-GELLRSGIKVALLGAPNAGKSSLLNQIVGRDAAIVSSEEGTTRDIVDVGVDLG 322
Query: 412 GYPVILLDTAGLRTTTS 428
G+ D AGLR+ S
Sbjct: 323 GWLCKFGDMAGLRSKLS 339
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 150/293 (51%), Gaps = 70/293 (23%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TI+ALS+ G+ +++IR+SGPD + K++ PD+K+PKPR+A+LR I +P +
Sbjct: 45 TTIYALSTAPGRAAIAIIRISGPDCIPIYKALC--PDRKLPKPRFAALRTIYEPGKPLSA 102
Query: 88 DEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVV 147
D NAL S A
Sbjct: 103 D--------------------------NALDSGA-------------------------- 110
Query: 148 LDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG--------LRPAEPGE 199
L FP PN+ TGED E VHGS AVI +IL A+ K G +R AEPGE
Sbjct: 111 ----LVFHFPAPNTVTGEDVLELHVHGSPAVIKSILSAIPKCAGPGDAPSASIRYAEPGE 166
Query: 200 FSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASV 259
F++RAF N++LDL Q EALG+ + A+TE QR+ A+ L Y +WR+ +L + +
Sbjct: 167 FTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDALSTRYEQWRKQLLYARGEL 226
Query: 260 EAYIDFSEDEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK 309
EA IDFSED+ + D+ +++V QV L I HI+ ++K G +RSGIK
Sbjct: 227 EALIDFSEDQHFDESVDDFISSVTGQVDSLLHQINLHIKNASK-GELLRSGIK 278
>gi|255713564|ref|XP_002553064.1| KLTH0D08074p [Lachancea thermotolerans]
gi|238934444|emb|CAR22626.1| KLTH0D08074p [Lachancea thermotolerans CBS 6340]
Length = 497
Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 175/346 (50%), Gaps = 71/346 (20%)
Query: 100 KCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVS--EVVLDEGLCLWFP 157
+ ++V+RV+G + + V PR SLRN+ + +LD L L+F
Sbjct: 34 RSAIAVVRVTGSHCKHIYYQLTGAQSPPV--PRRCSLRNLYHAAGAKKNLLDSSLVLFFE 91
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKL----PGL--RPAEPGEFSKRAFFNNKLD 211
P SFTGED E +HG AVI ++LGA+ L GL R A+PGEFS+RAF N ++D
Sbjct: 92 NPKSFTGEDMLELHLHGGRAVIKSVLGAIQSLGDQKKGLDIRYAQPGEFSQRAFQNGRMD 151
Query: 212 LTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEII 271
LTQ E + DLI AETE QR+ AL +G K L+ WR I+ +A + A IDF ED I
Sbjct: 152 LTQAEGVADLIDAETETQRRSALQSFRGQNKALFDGWRSQIVSGIAQLTAIIDFGEDAEI 211
Query: 272 EDN--ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEII 329
ED IL++VR ++ L +K I+L
Sbjct: 212 EDTQAILDSVRRNMMNL----DKEIKLF-------------------------------- 235
Query: 330 EDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389
+L RS ++Q +G+K ++G PN GKSSL+N +
Sbjct: 236 ---VLKIRRSSILQ--------------------NGVKVALLGSPNAGKSSLLNCITNDD 272
Query: 390 ISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
SIV+ PGTTRD I+ +D+ GY V+L DTAG+R+ + D IE +G
Sbjct: 273 TSIVSDTPGTTRDAIDVPIDVDGYKVVLCDTAGIRSESEDQIEIQG 318
>gi|149248662|ref|XP_001528718.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448672|gb|EDK43060.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 497
Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 128/348 (36%), Positives = 180/348 (51%), Gaps = 73/348 (20%)
Query: 99 GKCGVSVIRVSGPDT---LNALKSMACYPDQKVSKPRYASLRNIVDP-VSEVVLDEGLCL 154
K ++V+R+SGP + N L P K R AS+R + P VS +LDE L L
Sbjct: 30 AKSAIAVVRISGPQSSYIYNKLTKTETPP-----KNRIASVRKLYSPTVSSKLLDESLTL 84
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG------LRPAEPGEFSKRAFFNN 208
+F KP ++TG D E +HG IA+I A+L A++ L +R AEPGEFSK+AF N
Sbjct: 85 FFAKPRTYTGLDLLELHLHGGIAIIKAVLEAISALHDPDNGVIIRQAEPGEFSKQAFANG 144
Query: 209 KLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSED 268
K DLT E + ++I AETELQR +L M G K ++++WRQ +LE++A++ IDF ED
Sbjct: 145 KYDLTALEGISEMINAETELQRLASLASMSGQTKDIFNKWRQDLLENVANLTTLIDFGED 204
Query: 269 EIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI 328
+E+ + + SV I E EI
Sbjct: 205 HDLEE------------------------------------TALLFDSVSEKIKVMESEI 228
Query: 329 IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQK 388
E L+ +S V L GI +VG PN GKSS++N L +
Sbjct: 229 GE--YLHRTKSSEVLL-------------------KGINLTLVGPPNAGKSSILNTLSNR 267
Query: 389 QISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR-TTTSDIIETEG 435
+ +IV++I GTTRDV+E L+IGG+ V+L DTAG+R + +D IE EG
Sbjct: 268 EAAIVSNIAGTTRDVLELPLEIGGFKVVLGDTAGIRLLSEADEIEQEG 315
>gi|355755597|gb|EHH59344.1| hypothetical protein EGM_09429 [Macaca fascicularis]
Length = 444
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/208 (48%), Positives = 135/208 (64%), Gaps = 9/208 (4%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CG++VIR SGP + +AL+ + D + R+ASLR + DP S LD L LWFP
Sbjct: 43 QGRCGIAVIRTSGPSSGHALRILTAARD--LPPARHASLRLLSDPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E
Sbjct: 101 GPRSFTGEDCVEFHVHGGPAVVSGVLQALGDVPGLRPAEAGEFTRRAFANGKLNLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILE-----SLASVEAYIDFSEDEIIE 272
L DLI AETE QR++AL Q+ G L L W + + + +LA VEAYIDFSED+ +E
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKASSPFALAHVEAYIDFSEDDNLE 220
Query: 273 DNILNTVR--SQVVQLHGSIEKHIELSN 298
+ +L + S V G++E ++L+
Sbjct: 221 EGVLEQRKPVSIVSPEPGTLETPVDLAG 248
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 51/82 (62%), Gaps = 5/82 (6%)
Query: 18 SRRCSHLAIKN---TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYAS 74
+RR S A TIFALSSG G+CG++VIR SGP + +AL+ + D +P R+AS
Sbjct: 21 TRRSSGAAAPGSGATIFALSSGQGRCGIAVIRTSGPSSGHALRILTAARD--LPPARHAS 78
Query: 75 LRNIVDPVSKVVLDEGLCLWFP 96
LR + DP S LD L LWFP
Sbjct: 79 LRLLSDPRSGEPLDRALVLWFP 100
>gi|288956852|ref|YP_003447193.1| tRNA modification GTPase [Azospirillum sp. B510]
gi|288909160|dbj|BAI70649.1| tRNA modification GTPase [Azospirillum sp. B510]
Length = 443
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 121/328 (36%), Positives = 167/328 (50%), Gaps = 67/328 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV+V+R+SGP+ +AL ++ P + PR A L + DP LD+ L L F
Sbjct: 14 GRSGVAVVRISGPEAGSALAALTGRP---LPLPRRAVLATLRDPRDGDALDDALVLRFTA 70
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E +HG AV+ ++ AL LPGLR AEPGEF++RAF N KLDL TEA
Sbjct: 71 PASFTGEDVVELHLHGGRAVVTGVVEALATLPGLRLAEPGEFTRRAFENGKLDL--TEA- 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
EA D + E
Sbjct: 128 -----------------------------------------EAVADLIDAETTAQR---- 142
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI--CLASVEAYIDFSEDEIIEDNILNT 336
R + Q+ G++ R+ G + + LA +EA IDF+E+++ +
Sbjct: 143 -RQALRQMEGALG-----------RLYDGWRERLTRALAHIEADIDFAEEDL-PGGVAEA 189
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
VR + L G I H++ + G R+R G+ IVG PN GKSSL+N L ++ +IV++
Sbjct: 190 VRPVLAGLAGEIAAHLDDGGR-GERLREGLHIAIVGAPNAGKSSLLNALARRDAAIVSAR 248
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLR 424
GTTRD+IE HLD+GGYPV+L DTAGLR
Sbjct: 249 AGTTRDIIEVHLDLGGYPVVLADTAGLR 276
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TI+AL++ G+ GV+V+R+SGP+ +AL ++ P +P PR A L + DP L
Sbjct: 4 TTIYALATAPGRSGVAVVRISGPEAGSALAALTGRP---LPLPRRAVLATLRDPRDGDAL 60
Query: 88 DEGLCLWF 95
D+ L L F
Sbjct: 61 DDALVLRF 68
>gi|294656970|ref|XP_002770353.1| DEHA2D18546p [Debaryomyces hansenii CBS767]
gi|199431868|emb|CAR65707.1| DEHA2D18546p [Debaryomyces hansenii CBS767]
Length = 516
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 121/348 (34%), Positives = 183/348 (52%), Gaps = 75/348 (21%)
Query: 99 GKCGVSVIRVSGPDT---LNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLW 155
+ + VIRVSG + N L + P K+ AS+R + +++LDE L L+
Sbjct: 50 ARSAIGVIRVSGSQSQYIYNQLTKTSKSPKLKI-----ASVRKLYSQ-EDILLDEALTLY 103
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLP------GLRPAEPGEFSKRAFFNNK 209
F P ++TGED E +HG A+I ++L A+ KL +R AE GEFS+RAF N +
Sbjct: 104 FKSPKTYTGEDILELHLHGGTAIIQSVLNAIKKLHEPNKGINIRYAENGEFSRRAFINGR 163
Query: 210 LDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDE 269
DLT+ E + ++I AETE QR AL + G+ K+ +++WR+ I++++A + IDF ED
Sbjct: 164 FDLTEIEGIREMIDAETESQRVAALSSLTGDTKKTFAKWREEIVKNVALLTTVIDFGEDH 223
Query: 270 IIEDNILNTVRSQVVQLHGSIEKHIE-LSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI 328
IE +V QL ++E++++ L+ + +R + S + +
Sbjct: 224 DIE---------EVAQLFDTVEQNMDTLTGEINTFLRKVLSSEVLM-------------- 260
Query: 329 IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQK 388
GIK +++G PN GKSSL+N+L K
Sbjct: 261 -----------------------------------KGIKLILLGPPNAGKSSLLNYLANK 285
Query: 389 QISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT-SDIIETEG 435
+ +IV+ I GTTRDVI+ LDI GY VI+ DTAG+RTTT +D IE EG
Sbjct: 286 EAAIVSDIAGTTRDVIDVPLDINGYKVIVGDTAGIRTTTNADKIELEG 333
>gi|320040661|gb|EFW22594.1| mitochondrial GTPase [Coccidioides posadasii str. Silveira]
Length = 481
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 126/354 (35%), Positives = 179/354 (50%), Gaps = 79/354 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPV----SEVVLDEG-LC 153
G+ ++++RVSGP + K + P + KPRYA+LR + DP S VLD G L
Sbjct: 69 GRAAIAIVRVSGPACIQVYKGLC--PGSPLPKPRYATLRTLCDPTQSPSSNAVLDSGALV 126
Query: 154 LWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL------PGL----RPAEPGEFSKR 203
L+FP P + TGED E +HGS AVI A+L A+ K GL R AEPGEF++R
Sbjct: 127 LYFPAPKTVTGEDVLELHIHGSPAVIKAVLNAIPKCLENKIETGLESCIRYAEPGEFTRR 186
Query: 204 AFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYI 263
AF N++LDL Q EALG+ + A+TE QR+ A+ L Y W
Sbjct: 187 AFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTSDTLSARYENW--------------- 231
Query: 264 DFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDF 323
R Q++ G +E A IDF
Sbjct: 232 ----------------RQQLLYARGELE---------------------------ALIDF 248
Query: 324 SEDEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSS 380
SED+ + D+ + +V QV +L I+ HIE ++K G +RSGIK ++G PN GKSS
Sbjct: 249 SEDQHFDESVDDFMISVTGQVRKLLNQIDVHIENASK-GELLRSGIKIALLGAPNAGKSS 307
Query: 381 LMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETE 434
L+N + ++ +IV+S GTTRD+++ +D+GG+ D AGLR+ +I E
Sbjct: 308 LLNRIVGREAAIVSSEEGTTRDIVDVGVDLGGWLCKFGDMAGLRSAPPKLIGEE 361
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 143/289 (49%), Gaps = 62/289 (21%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPV----SK 84
TI+ALS+ G+ ++++RVSGP + K + P +PKPRYA+LR + DP S
Sbjct: 60 TIYALSTAPGRAAIAIVRVSGPACIQVYKGLC--PGSPLPKPRYATLRTLCDPTQSPSSN 117
Query: 85 VVLDEG-LCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPV 143
VLD G L L+FP + V+G D L + + V K ++ N +
Sbjct: 118 AVLDSGALVLYFP-------APKTVTGEDVLE----LHIHGSPAVIK----AVLNAIPKC 162
Query: 144 SEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKR 203
E ++ GL E C + AEPGEF++R
Sbjct: 163 LENKIETGL------------ESCIRY------------------------AEPGEFTRR 186
Query: 204 AFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYI 263
AF N++LDL Q EALG+ + A+TE QR+ A+ L Y WRQ +L + +EA I
Sbjct: 187 AFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTSDTLSARYENWRQQLLYARGELEALI 246
Query: 264 DFSEDEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK 309
DFSED+ + D+ + +V QV +L I+ HIE ++K G +RSGIK
Sbjct: 247 DFSEDQHFDESVDDFMISVTGQVRKLLNQIDVHIENASK-GELLRSGIK 294
>gi|393763506|ref|ZP_10352126.1| tRNA modification GTPase TrmE [Alishewanella agri BL06]
gi|392605574|gb|EIW88465.1| tRNA modification GTPase TrmE [Alishewanella agri BL06]
Length = 453
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 172/332 (51%), Gaps = 66/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IR+SGPD K++A +++ KPRYA ++ VLD+G+ L+FP
Sbjct: 15 GRAGVGIIRISGPDC----KTVAAAILKRLPKPRYAEYLPFF--ATDQVLDQGIALYFPG 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + + P +R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 69 PNSFTGEDVLELQGHGGPVLLDMLLRQVLQTPNVRIARPGEFSERAFLNDKLDLAQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + A+ ++G + + + ++ VEA IDF ++EI
Sbjct: 129 ADLIDASSEQAARSAMQSLQGEFSKRIHQLVEKVIHLRMYVEAAIDFPDEEI-------- 180
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
L+ + D +E II+D L VR
Sbjct: 181 ---------------------------------DFLSDGKVAADLAE--IIDD--LAQVR 203
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
Q Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 204 KQATQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTEIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T +
Sbjct: 249 TTRDVLREHIHIDGMPLHIIDTAGLRDTEDQV 280
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 11/119 (9%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A+++ G+ GV +IR+SGPD K++A +++PKPRYA + VL
Sbjct: 5 DTIAAVATAPGRAGVGIIRISGPDC----KTVAAAILKRLPKPRYAEYLPFF--ATDQVL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLNA-LKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ L+FP + G V+ + GP L+ L+ + P+ ++++P S R ++
Sbjct: 59 DQGIALYFPGPNSFTGEDVLELQGHGGPVLLDMLLRQVLQTPNVRIARPGEFSERAFLN 117
>gi|375110092|ref|ZP_09756328.1| tRNA modification GTPase TrmE [Alishewanella jeotgali KCTC 22429]
gi|374569841|gb|EHR40988.1| tRNA modification GTPase TrmE [Alishewanella jeotgali KCTC 22429]
Length = 453
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 172/332 (51%), Gaps = 66/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IR+SGPD K++A +++ KPRYA ++ VLD+G+ L+FP
Sbjct: 15 GRAGVGIIRISGPDC----KTVAAAILKRLPKPRYAEYLPFF--ATDQVLDQGIALYFPG 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + + P +R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 69 PNSFTGEDVLELQGHGGPVLLDMLLRQVLQTPNVRIARPGEFSERAFLNDKLDLAQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + A+ ++G + + + ++ VEA IDF ++EI
Sbjct: 129 ADLIDASSEQAARSAMQSLQGEFSKRIHQLVEKVIHLRMYVEAAIDFPDEEI-------- 180
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
L+ + D +E II+D L VR
Sbjct: 181 ---------------------------------DFLSDGKVAADLAE--IIDD--LAQVR 203
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
Q Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 204 KQATQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTEIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T +
Sbjct: 249 TTRDVLREHIHIDGMPLHIIDTAGLRDTEDQV 280
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 11/119 (9%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A+++ G+ GV +IR+SGPD K++A +++PKPRYA + VL
Sbjct: 5 DTIAAVATAPGRAGVGIIRISGPDC----KTVAAAILKRLPKPRYAEYLPFF--ATDQVL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLNA-LKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ L+FP + G V+ + GP L+ L+ + P+ ++++P S R ++
Sbjct: 59 DQGIALYFPGPNSFTGEDVLELQGHGGPVLLDMLLRQVLQTPNVRIARPGEFSERAFLN 117
>gi|398801804|ref|ZP_10561041.1| tRNA modification GTPase TrmE [Pantoea sp. GM01]
gi|398091240|gb|EJL81689.1| tRNA modification GTPase TrmE [Pantoea sp. GM01]
Length = 454
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +++ K+ KPRYA D V VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISGAKAADVAQAVLG----KLPKPRYADYLPFSD-VDGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRIVALPGLRIAQPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + A++ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSAVNSLQGAFSLRINALVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + + +I D LN VR
Sbjct: 187 ---------GKIEAQLNV-------------------------------VIGD--LNGVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 12/168 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG + +++ K+PKPRYA D V VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGAKAADVAQAVLG----KLPKPRYADYLPFSD-VDGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVDP 142
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVALPGLRIAQPGEFSERAFLND 119
Query: 143 VSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAV-INAILGALTKL 189
++ E + + + G+ ++ INA++ ALT L
Sbjct: 120 KLDLAQAEAIADLIDASSEQAARSAVN-SLQGAFSLRINALVEALTHL 166
>gi|387891250|ref|YP_006321548.1| tRNA modification GTPase TrmE [Escherichia blattae DSM 4481]
gi|414595076|ref|ZP_11444707.1| tRNA modification GTPase MnmE [Escherichia blattae NBRC 105725]
gi|386926083|gb|AFJ49037.1| tRNA modification GTPase TrmE [Escherichia blattae DSM 4481]
gi|403193996|dbj|GAB82359.1| tRNA modification GTPase MnmE [Escherichia blattae NBRC 105725]
Length = 454
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 171/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + +++ K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRVSGRQASDVARAVLG----KLPKPRYADYLPFRD-ADGSTLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + A++ ++G +E + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSAVNSLQGAFSGRVNELVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE +G+ +VI L+TVR
Sbjct: 186 --------DGKIE--------------AGLNAVIA-------------------SLDTVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L + +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++RVSG + +++ K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRVSGRQASDVARAVLG----KLPKPRYADYLPFRD-ADGSTL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 118
>gi|303322326|ref|XP_003071156.1| GTPase family protein [Coccidioides posadasii C735 delta SOWgp]
gi|240110855|gb|EER29011.1| GTPase family protein [Coccidioides posadasii C735 delta SOWgp]
Length = 628
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 126/354 (35%), Positives = 179/354 (50%), Gaps = 79/354 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPV----SEVVLDEG-LC 153
G+ ++++RVSGP + K + P + KPRYA+LR + DP S VLD G L
Sbjct: 69 GRAAIAIVRVSGPACIQVYKGLC--PGSPLPKPRYATLRTLCDPTQSPSSNAVLDSGALV 126
Query: 154 LWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL------PGL----RPAEPGEFSKR 203
L+FP P + TGED E +HGS AVI A+L A+ K GL R AEPGEF++R
Sbjct: 127 LYFPAPKTVTGEDVLELHIHGSPAVIKAVLNAIPKCLENKIETGLESCIRYAEPGEFTRR 186
Query: 204 AFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYI 263
AF N++LDL Q EALG+ + A+TE QR+ A+ L Y W
Sbjct: 187 AFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTSDTLSARYENW--------------- 231
Query: 264 DFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDF 323
R Q++ G +E A IDF
Sbjct: 232 ----------------RQQLLYARGELE---------------------------ALIDF 248
Query: 324 SEDEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSS 380
SED+ + D+ + +V QV +L I+ HIE ++K G +RSGIK ++G PN GKSS
Sbjct: 249 SEDQHFDESVDDFMISVTGQVRKLLNQIDVHIENASK-GELLRSGIKIALLGAPNAGKSS 307
Query: 381 LMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETE 434
L+N + ++ +IV+S GTTRD+++ +D+GG+ D AGLR+ +I E
Sbjct: 308 LLNRIVGREAAIVSSEEGTTRDIVDVGVDLGGWLCKFGDMAGLRSAPPKLIGEE 361
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 143/289 (49%), Gaps = 62/289 (21%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPV----SK 84
TI+ALS+ G+ ++++RVSGP + K + P +PKPRYA+LR + DP S
Sbjct: 60 TIYALSTAPGRAAIAIVRVSGPACIQVYKGLC--PGSPLPKPRYATLRTLCDPTQSPSSN 117
Query: 85 VVLDEG-LCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPV 143
VLD G L L+FP + V+G D L + + V K ++ N +
Sbjct: 118 AVLDSGALVLYFP-------APKTVTGEDVLE----LHIHGSPAVIK----AVLNAIPKC 162
Query: 144 SEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKR 203
E ++ GL E C + AEPGEF++R
Sbjct: 163 LENKIETGL------------ESCIRY------------------------AEPGEFTRR 186
Query: 204 AFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYI 263
AF N++LDL Q EALG+ + A+TE QR+ A+ L Y WRQ +L + +EA I
Sbjct: 187 AFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTSDTLSARYENWRQQLLYARGELEALI 246
Query: 264 DFSEDEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK 309
DFSED+ + D+ + +V QV +L I+ HIE ++K G +RSGIK
Sbjct: 247 DFSEDQHFDESVDDFMISVTGQVRKLLNQIDVHIENASK-GELLRSGIK 294
>gi|119196533|ref|XP_001248870.1| hypothetical protein CIMG_02641 [Coccidioides immitis RS]
Length = 628
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 126/354 (35%), Positives = 179/354 (50%), Gaps = 79/354 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPV----SEVVLDEG-LC 153
G+ ++++RVSGP + K + P + KPRYA+LR + DP S VLD G L
Sbjct: 69 GRAAIAIVRVSGPACVQVYKGLC--PGSPLPKPRYATLRTLCDPTQSPSSNAVLDSGALV 126
Query: 154 LWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL------PGL----RPAEPGEFSKR 203
L+FP P + TGED E +HGS AVI A+L A+ K GL R AEPGEF++R
Sbjct: 127 LYFPAPKTVTGEDVLELHIHGSPAVIKAVLNAIPKCLENKIETGLESCIRYAEPGEFTRR 186
Query: 204 AFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYI 263
AF N++LDL Q EALG+ + A+TE QR+ A+ L Y W
Sbjct: 187 AFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTSDTLSARYENW--------------- 231
Query: 264 DFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDF 323
R Q++ G +E A IDF
Sbjct: 232 ----------------RQQLLYARGELE---------------------------ALIDF 248
Query: 324 SEDEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSS 380
SED+ + D+ + +V QV +L I+ HIE ++K G +RSGIK ++G PN GKSS
Sbjct: 249 SEDQHFDESVDDFMISVTGQVRKLLNQIDVHIENASK-GELLRSGIKIALLGAPNAGKSS 307
Query: 381 LMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETE 434
L+N + ++ +IV+S GTTRD+++ +D+GG+ D AGLR+ +I E
Sbjct: 308 LLNRIVGREAAIVSSEEGTTRDIVDVGVDLGGWLCKFGDMAGLRSAPPKLIGEE 361
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 143/289 (49%), Gaps = 62/289 (21%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPV----SK 84
TI+ALS+ G+ ++++RVSGP + K + P +PKPRYA+LR + DP S
Sbjct: 60 TIYALSTAPGRAAIAIVRVSGPACVQVYKGLC--PGSPLPKPRYATLRTLCDPTQSPSSN 117
Query: 85 VVLDEG-LCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPV 143
VLD G L L+FP + V+G D L + + V K ++ N +
Sbjct: 118 AVLDSGALVLYFP-------APKTVTGEDVLE----LHIHGSPAVIK----AVLNAIPKC 162
Query: 144 SEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKR 203
E ++ GL E C + AEPGEF++R
Sbjct: 163 LENKIETGL------------ESCIRY------------------------AEPGEFTRR 186
Query: 204 AFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYI 263
AF N++LDL Q EALG+ + A+TE QR+ A+ L Y WRQ +L + +EA I
Sbjct: 187 AFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTSDTLSARYENWRQQLLYARGELEALI 246
Query: 264 DFSEDEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK 309
DFSED+ + D+ + +V QV +L I+ HIE ++K G +RSGIK
Sbjct: 247 DFSEDQHFDESVDDFMISVTGQVRKLLNQIDVHIENASK-GELLRSGIK 294
>gi|392861926|gb|EAS37471.2| small GTP-binding protein [Coccidioides immitis RS]
Length = 619
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 126/354 (35%), Positives = 179/354 (50%), Gaps = 79/354 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPV----SEVVLDEG-LC 153
G+ ++++RVSGP + K + P + KPRYA+LR + DP S VLD G L
Sbjct: 69 GRAAIAIVRVSGPACVQVYKGLC--PGSPLPKPRYATLRTLCDPTQSPSSNAVLDSGALV 126
Query: 154 LWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL------PGL----RPAEPGEFSKR 203
L+FP P + TGED E +HGS AVI A+L A+ K GL R AEPGEF++R
Sbjct: 127 LYFPAPKTVTGEDVLELHIHGSPAVIKAVLNAIPKCLENKIETGLESCIRYAEPGEFTRR 186
Query: 204 AFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYI 263
AF N++LDL Q EALG+ + A+TE QR+ A+ L Y W
Sbjct: 187 AFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTSDTLSARYENW--------------- 231
Query: 264 DFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDF 323
R Q++ G +E A IDF
Sbjct: 232 ----------------RQQLLYARGELE---------------------------ALIDF 248
Query: 324 SEDEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSS 380
SED+ + D+ + +V QV +L I+ HIE ++K G +RSGIK ++G PN GKSS
Sbjct: 249 SEDQHFDESVDDFMISVTGQVRKLLNQIDVHIENASK-GELLRSGIKIALLGAPNAGKSS 307
Query: 381 LMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETE 434
L+N + ++ +IV+S GTTRD+++ +D+GG+ D AGLR+ +I E
Sbjct: 308 LLNRIVGREAAIVSSEEGTTRDIVDVGVDLGGWLCKFGDMAGLRSAPPKLIGEE 361
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 143/289 (49%), Gaps = 62/289 (21%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPV----SK 84
TI+ALS+ G+ ++++RVSGP + K + P +PKPRYA+LR + DP S
Sbjct: 60 TIYALSTAPGRAAIAIVRVSGPACVQVYKGLC--PGSPLPKPRYATLRTLCDPTQSPSSN 117
Query: 85 VVLDEG-LCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPV 143
VLD G L L+FP + V+G D L + + V K ++ N +
Sbjct: 118 AVLDSGALVLYFP-------APKTVTGEDVLE----LHIHGSPAVIK----AVLNAIPKC 162
Query: 144 SEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKR 203
E ++ GL E C + AEPGEF++R
Sbjct: 163 LENKIETGL------------ESCIRY------------------------AEPGEFTRR 186
Query: 204 AFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYI 263
AF N++LDL Q EALG+ + A+TE QR+ A+ L Y WRQ +L + +EA I
Sbjct: 187 AFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTSDTLSARYENWRQQLLYARGELEALI 246
Query: 264 DFSEDEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK 309
DFSED+ + D+ + +V QV +L I+ HIE ++K G +RSGIK
Sbjct: 247 DFSEDQHFDESVDDFMISVTGQVRKLLNQIDVHIENASK-GELLRSGIK 294
>gi|391344623|ref|XP_003746595.1| PREDICTED: tRNA modification GTPase MnmE-like [Metaseiulus
occidentalis]
Length = 471
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 126/342 (36%), Positives = 179/342 (52%), Gaps = 75/342 (21%)
Query: 100 KCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKP 159
K V+V RVSGP+ A + M+ + + + R A +R + PV+ ++D G+ LWF P
Sbjct: 42 KSAVAVFRVSGPE---AARVMSLIGNIESPEHRRAYVRRLRHPVTSKIIDSGVMLWFKGP 98
Query: 160 NSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALG 219
+SFTGED CE Q HGSIAVI + AL + GLR AEPGEF+KRAF N K
Sbjct: 99 SSFTGEDVCELQCHGSIAVIKTLSSALASIDGLRMAEPGEFAKRAFHNRK---------- 148
Query: 220 DLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTV 279
+D S+ E + D I
Sbjct: 149 -------------------------------------------LDLSDAESLADLIDAET 165
Query: 280 RSQVVQ-LHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIE-----DNI 333
SQ+ Q + GS +LS C + S IK +A+ EAYIDFSED+ I N+
Sbjct: 166 ESQLDQAIRGS-----QLSGVCN-QWMSQIKE--AMANFEAYIDFSEDQDIPAEEVVKNV 217
Query: 334 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIV 393
+T+R+ ++++ +++ S G IR+G + I G PNVGKS+LMN L Q++ SIV
Sbjct: 218 RSTLRNTLLEIRLALQ-----SAPRGHAIRTGFRVAITGRPNVGKSTLMNILSQQETSIV 272
Query: 394 TSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
+ GTTRD+++ LD+GG P++L DTAG+R+ T D +E EG
Sbjct: 273 SPSAGTTRDLVKTTLDLGGLPIVLCDTAGIRSDTDDAVELEG 314
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 24/148 (16%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
++TIFALS+ + K V+V RVSGP+ A + M+ + + P+ R A +R + PV+
Sbjct: 29 FRSTIFALSTAYVKSAVAVFRVSGPE---AARVMSLIGNIESPEHRRAYVRRLRHPVTSK 85
Query: 86 VLDEGLCLWFPR--------------HGKCGVSVIRVSGPDTLNALK-------SMACYP 124
++D G+ LWF HG V S +++ L+ + +
Sbjct: 86 IIDSGVMLWFKGPSSFTGEDVCELQCHGSIAVIKTLSSALASIDGLRMAEPGEFAKRAFH 145
Query: 125 DQKVSKPRYASLRNIVDPVSEVVLDEGL 152
++K+ SL +++D +E LD+ +
Sbjct: 146 NRKLDLSDAESLADLIDAETESQLDQAI 173
>gi|118591441|ref|ZP_01548839.1| tRNA modification GTPase [Stappia aggregata IAM 12614]
gi|118436113|gb|EAV42756.1| tRNA modification GTPase [Stappia aggregata IAM 12614]
Length = 449
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 121/338 (35%), Positives = 175/338 (51%), Gaps = 72/338 (21%)
Query: 102 GVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNS 161
GV+V+RVSGP T ++++A +V +PR L + P + VLDE L L+F P S
Sbjct: 16 GVAVLRVSGPKTRGIVEALAG----RVPEPRKTMLAKLRHPETGDVLDEALVLYFEGPAS 71
Query: 162 FTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDL 221
FTGED EFQ HG AV++ +L L+ P RPAE GEF++RAF +
Sbjct: 72 FTGEDVAEFQCHGGRAVVSGLLSVLSTFPQCRPAEAGEFTRRAFDRGR------------ 119
Query: 222 IQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRS 281
+D +E E + D I S
Sbjct: 120 -----------------------------------------MDLTEVEGLADLIAAETES 138
Query: 282 Q----VVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
Q V Q+ G++ K + K + +R A +EA DF+++E + ++ + V
Sbjct: 139 QRKQAVRQMGGALGKLYDDWRKRLIHMR---------AMIEADFDFADEEDVPGSVADEV 189
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
S+ QLH I +H+E S + G R+RSG++ V++G PN GKSSL+N + ++++IVT
Sbjct: 190 WSEARQLHAEIAEHLEKS-RSGERLRSGLQVVLMGAPNAGKSSLLNAIAGREVAIVTEEA 248
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE HLD+ GYPV L+DTAGLR T ++E EG
Sbjct: 249 GTTRDVIEVHLDLSGYPVTLVDTAGLRQTEG-VVEKEG 285
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ +TIFALSSG GV+V+RVSGP T ++++A +VP+PR L + P +
Sbjct: 1 MADTIFALSSGAVPSGVAVLRVSGPKTRGIVEALAG----RVPEPRKTMLAKLRHPETGD 56
Query: 86 VLDEGLCLWF 95
VLDE L L+F
Sbjct: 57 VLDEALVLYF 66
>gi|298293756|ref|YP_003695695.1| tRNA modification GTPase TrmE [Starkeya novella DSM 506]
gi|296930267|gb|ADH91076.1| tRNA modification GTPase TrmE [Starkeya novella DSM 506]
Length = 458
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 124/333 (37%), Positives = 167/333 (50%), Gaps = 65/333 (19%)
Query: 103 VSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSF 162
V+VIR+SGP AL ++A ++ +PR A L + DP S VLDEGL LWFP P S
Sbjct: 28 VAVIRISGPAAGEALVALA----DRLPEPRRAMLAKLRDPSSGEVLDEGLALWFPGPRSA 83
Query: 163 TGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLI 222
TGED E Q+HG AV+ A+LGAL LPGLRPAE GEF++RAF N +L DL
Sbjct: 84 TGEDMAELQIHGGRAVVAAVLGALFALPGLRPAERGEFTRRAFLNGRL---------DLT 134
Query: 223 QAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQ 282
QAE LA ++I R
Sbjct: 135 QAE-----------------------------GLA-----------DLIAAETEGQRRLA 154
Query: 283 VVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVV 342
G + + +E + +R +A +EA IDFS++E + R +V
Sbjct: 155 FAHAFGHLGQRVEEWRRRLIR---------AMALIEAGIDFSDEEDVPAEARVMARPEVE 205
Query: 343 QLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRD 402
L G ++ L+++ G +R G I G PN GKSSL+N L ++I+IV+ PGTTRD
Sbjct: 206 ALLGELDAA--LADRRGAMVREGALIAIAGLPNAGKSSLINALAAREIAIVSDEPGTTRD 263
Query: 403 VIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
V+E LD+ G+ V L+DTAGLR +E EG
Sbjct: 264 VLEVALDLSGHKVTLVDTAGLREAEGK-VEAEG 295
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 47/72 (65%), Gaps = 5/72 (6%)
Query: 25 AIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSK 84
A ++TI A+SSG G V+VIR+SGP AL ++A ++P+PR A L + DP S
Sbjct: 12 AGRDTIAAVSSGTGGA-VAVIRISGPAAGEALVALA----DRLPEPRRAMLAKLRDPSSG 66
Query: 85 VVLDEGLCLWFP 96
VLDEGL LWFP
Sbjct: 67 EVLDEGLALWFP 78
>gi|312115383|ref|YP_004012979.1| tRNA modification GTPase TrmE [Rhodomicrobium vannielii ATCC 17100]
gi|311220512|gb|ADP71880.1| tRNA modification GTPase TrmE [Rhodomicrobium vannielii ATCC 17100]
Length = 460
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 172/337 (51%), Gaps = 64/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G++VIR+SG + L ++ C + ++ PR +S R + P S +LDE + LW P
Sbjct: 11 GRAGIAVIRISGRASRKTLYAL-C--NGRLPAPRVSSFRRLRHPTSREMLDEAMVLWLPG 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FTGED E VHG AV+ A++ AL + GLR AEPGEF++RAF N KLDLT+ E L
Sbjct: 68 PANFTGEDMAELYVHGGRAVVTAVMNALADV-GLRLAEPGEFTRRAFGNGKLDLTEAEGL 126
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A+TE+QR++AL Q G ++ Y +WR+ +L+++A VEA +DFS++ I D
Sbjct: 127 ADLINADTEIQRRQALAQHSGAMRARYEKWRRTLLKAMAYVEASLDFSDEADIADGAFKE 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+ L +E+ + + G +R GI I E + + ++LN +
Sbjct: 187 AVPEARLLAAELERALA-DGRRGEILREGISVAIV----------GEPNVGKSSLLNALA 235
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ +++ EP G
Sbjct: 236 GREA-------------------------AIVYDEP-----------------------G 247
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE LD+ GYP +L DTAG+R S +E EG
Sbjct: 248 TTRDVIEVSLDLDGYPFVLRDTAGIREAASP-VEQEG 283
>gi|158426332|ref|YP_001527624.1| tRNA modification GTPase TrmE [Azorhizobium caulinodans ORS 571]
gi|205829055|sp|A8I264.1|MNME_AZOC5 RecName: Full=tRNA modification GTPase MnmE
gi|158333221|dbj|BAF90706.1| small GTP-binding protein [Azorhizobium caulinodans ORS 571]
Length = 435
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 121/336 (36%), Positives = 171/336 (50%), Gaps = 66/336 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMA-CYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKP 159
GV+V+R SGP A ++A P +V+ RY +LR +P + +LD GL L+FP P
Sbjct: 18 SGVAVVRASGPRAREAGLALAGLVPPPRVA--RYVALR---EPGTGDLLDRGLILFFPGP 72
Query: 160 NSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALG 219
S TGED E +HG AV+ A+L L KLPG RPA GEF++RA N K+DL + E L
Sbjct: 73 RSATGEDTLELHLHGGPAVVTAVLRTLVKLPGFRPAAAGEFTRRAHANGKMDLAEVEGLA 132
Query: 220 DLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTV 279
DLI AE+E QR
Sbjct: 133 DLIVAESEAQR------------------------------------------------- 143
Query: 280 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRS 339
R + Q G++ + + G R R + LA VEA IDFS++ + D++ R+
Sbjct: 144 RQALAQSSGALSRAV-----AGWRERL----IRALALVEATIDFSDEGDVPDDLTGPARA 194
Query: 340 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGT 399
+ L + + +++ G R+R G I G PN GKS+L+N L ++ +IV+ +PGT
Sbjct: 195 EAAALCTELTTALADADR-GERVRDGFIIAIAGPPNAGKSTLLNRLAGREAAIVSPVPGT 253
Query: 400 TRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TRDV+E HL + G V L+DTAGLR T D++E EG
Sbjct: 254 TRDVLEVHLHLAGQAVTLVDTAGLR-ETDDLVEAEG 288
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFALSSG GV+V+R SGP A ++A VP PR A + +P + +L
Sbjct: 6 DTIFALSSGRVPSGVAVVRASGPRAREAGLALAGL----VPPPRVARYVALREPGTGDLL 61
Query: 88 DEGLCLWFP 96
D GL L+FP
Sbjct: 62 DRGLILFFP 70
>gi|290998015|ref|XP_002681576.1| mitochondrial tRNA modification GTPase [Naegleria gruberi]
gi|284095201|gb|EFC48832.1| mitochondrial tRNA modification GTPase [Naegleria gruberi]
Length = 609
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 127/341 (37%), Positives = 182/341 (53%), Gaps = 74/341 (21%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVS--KPRYASLR---NIVDPVSEVVLDEGLCLW 155
C VSVIRVSG +N + M +K+ K Y SL NI P+ +V+L L+
Sbjct: 123 CAVSVIRVSGAKAMNVVTKMTKLNPEKIESRKAYYCSLHDPNNINIPIDKVLL-----LY 177
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGAL-TKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
F PNSF+GED E HGS AV++ ++ AL +++ G RPA+PGEF+KRAF N K+DLT+
Sbjct: 178 FKGPNSFSGEDIIEIHCHGSKAVVSQLMKALGSEIVGYRPADPGEFTKRAFLNRKMDLTE 237
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
E L DL+ A+TE QR +A LKQ+ E +
Sbjct: 238 VEGLSDLLHAQTEHQRIQA-------LKQINGELSHI----------------------- 267
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
+ N R LH C+A V A+IDF +D +E++++
Sbjct: 268 VTNWKREM---LH-------------------------CVAHVTAFIDFGDDNGLEESVV 299
Query: 335 NTVR--SQVVQLHGSIEKHIELS-NKCGVRIR--SGIKSVIVGEPNVGKSSLMNFLCQKQ 389
R V +L +E ++E+S N+ G R+R +GI+ ++G PN GKSSL+N L +K
Sbjct: 300 YRERIMPSVKKLASELEYYLEISKNRLGERLREGNGIRCALLGAPNAGKSSLLNILAEKD 359
Query: 390 ISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I+IV+ GTTRDV+E L++ G+PV + DTAGLR +DI
Sbjct: 360 IAIVSDQAGTTRDVVEVQLNLKGWPVTVADTAGLRDQKNDI 400
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 137/291 (47%), Gaps = 78/291 (26%)
Query: 28 NTIFALSSGH-GKCGVSVIRVSGPDTLNALKSMACYPDQKVP--KPRYASLR---NIVDP 81
+TI+A++SG C VSVIRVSG +N + M +K+ K Y SL NI P
Sbjct: 110 DTIYAMASGFTSSCAVSVIRVSGAKAMNVVTKMTKLNPEKIESRKAYYCSLHDPNNINIP 169
Query: 82 VSKVVLDEGLCLWFPRHGKCGVSVIRVSGPDTLNA--LKSMACYPDQKVSKPRYASLRNI 139
+ KV+L L+F GP++ + + + C+ + V
Sbjct: 170 IDKVLL-----LYFK-------------GPNSFSGEDIIEIHCHGSKAV----------- 200
Query: 140 VDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGE 199
VS+++ A+ + I+G PG E
Sbjct: 201 ---VSQLMK----------------------------ALGSEIVGYRPADPG-------E 222
Query: 200 FSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASV 259
F+KRAF N K+DLT+ E L DL+ A+TE QR +AL Q+ G L + + W++ +L +A V
Sbjct: 223 FTKRAFLNRKMDLTEVEGLSDLLHAQTEHQRIQALKQINGELSHIVTNWKREMLHCVAHV 282
Query: 260 EAYIDFSEDEIIEDNILNTVR--SQVVQLHGSIEKHIELS-NKCGVRIRSG 307
A+IDF +D +E++++ R V +L +E ++E+S N+ G R+R G
Sbjct: 283 TAFIDFGDDNGLEESVVYRERIMPSVKKLASELEYYLEISKNRLGERLREG 333
>gi|440638836|gb|ELR08755.1| hypothetical protein GMDG_03434 [Geomyces destructans 20631-21]
Length = 583
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 176/344 (51%), Gaps = 73/344 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSE-----VVLD-EGL 152
G+ G+++IRVSG + + +++ C P + KPRYA+LR + +P + VLD + L
Sbjct: 82 GRAGIAIIRVSGTGSSDVYRAL-C-PSRATPKPRYATLRTLYEPNTTNSSKPSVLDSDAL 139
Query: 153 CLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALT---KLPGLRPAEPGEFSKRAFFNNK 209
L FP P + TGE+ E +HG A + A+L A++ +R AEPGEF++RAF NN+
Sbjct: 140 VLHFPSPKTVTGEEMLELHIHGGSATVKAVLSAISHCKSTSTIRYAEPGEFTRRAFQNNR 199
Query: 210 LDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDE 269
LDL Q EAL D + AETE QR+ A+ G L + Y W
Sbjct: 200 LDLAQVEALSDTLSAETEQQRRAAVRGNSGTLGRTYEGW--------------------- 238
Query: 270 IIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEII 329
R Q+++ G +E A IDFSED
Sbjct: 239 ----------RQQLLEARGELE---------------------------ALIDFSEDHDF 261
Query: 330 ED---NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLC 386
D ++L V + V + SI+ H E S + G+ +R GI+ ++G PN GKSSL+N +
Sbjct: 262 ADSDPDLLKNVGAAVENIRASIKAHDEGSRRGGM-LRKGIRISMLGPPNAGKSSLLNRIV 320
Query: 387 QKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
++ SIV++ GTTRD++E LDI GY DTAGLR+ +S I
Sbjct: 321 GREASIVSTEAGTTRDIVEVGLDIEGYLCTFADTAGLRSPSSGI 364
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 25/101 (24%)
Query: 19 RRCSHLAIK-----------------NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMAC 61
RRC H I+ +TI+A+S+ G+ G+++IRVSG + + +++ C
Sbjct: 46 RRCFHSTIQGQQNRESVGRGIVSFFNDTIYAVSTAPGRAGIAIIRVSGTGSSDVYRAL-C 104
Query: 62 YPDQKVPKPRYASLRNIVDPVSK-----VVLD-EGLCLWFP 96
P + PKPRYA+LR + +P + VLD + L L FP
Sbjct: 105 -PSRATPKPRYATLRTLYEPNTTNSSKPSVLDSDALVLHFP 144
>gi|331007811|ref|ZP_08330916.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [gamma
proteobacterium IMCC1989]
gi|330418378|gb|EGG92939.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [gamma
proteobacterium IMCC1989]
Length = 471
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 123/339 (36%), Positives = 184/339 (54%), Gaps = 70/339 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IR+SG L + ++ Q PRYA + +DP ++ LD+G+ L+FP
Sbjct: 27 GRGGVGIIRISGAKALAIGEKIS----QHRLTPRYAHYGDFIDPDTQETLDQGISLFFPN 82
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E HG V++ +L +T+ G A+PGEFS+RAF N+K+DLTQ EA+
Sbjct: 83 PHSFTGEDVVELHGHGGPIVLDQLLRVITR-SGATLAKPGEFSERAFLNDKMDLTQAEAI 141
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G FSE
Sbjct: 142 ADLIDANSEQAMRNALNSLQGA------------------------FSE----------- 166
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI--IEDNILNT 336
Q+H +E+ +L RI VEA IDF E+EI ++D
Sbjct: 167 ------QIHTLVEQLTQL------RIY-----------VEAAIDFPEEEIDFLQDQ---H 200
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+ SQ+ +H + K + K GV +R G+K VI G+PN GKSSL+N L ++ +IVT+I
Sbjct: 201 IHSQLHDIHRQLNK-VFTQAKQGVLVREGMKVVIAGKPNAGKSSLLNALAGREAAIVTNI 259
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+ +H+ + G P+ ++DTAGLR +++D++E G
Sbjct: 260 AGTTRDVLREHIHLDGMPLHIIDTAGLR-SSNDVVEQIG 297
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 8/130 (6%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A+++ G+ GV +IR+SG L + ++ Q PRYA + +DP ++ L
Sbjct: 17 DTIAAIATAPGRGGVGIIRISGAKALAIGEKIS----QHRLTPRYAHYGDFIDPDTQETL 72
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPV 143
D+G+ L+FP H G V+ + GP L+ L + ++KP S R ++
Sbjct: 73 DQGISLFFPNPHSFTGEDVVELHGHGGPIVLDQLLRVITRSGATLAKPGEFSERAFLNDK 132
Query: 144 SEVVLDEGLC 153
++ E +
Sbjct: 133 MDLTQAEAIA 142
>gi|300719145|ref|YP_003743948.1| tRNA modification GTPase [Erwinia billingiae Eb661]
gi|299064981|emb|CAX62101.1| tRNA modification GTPase [Erwinia billingiae Eb661]
Length = 454
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 121/349 (34%), Positives = 178/349 (51%), Gaps = 69/349 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D + LD+G+ LWFP
Sbjct: 15 GRGGVGILRISGSKAAEVAQALLG----KLPKPRYADYLPFRDTDGKA-LDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRIVAMPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSLRVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE +E ++I D L+ VR
Sbjct: 187 ---------GKIEAQLE-------------------------------QVIAD--LDGVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI----IETEGNLLEKNNQ 443
TTRDV+ +H+ I G P+ ++DTAGLR + ++ IE N +E+ ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADR 298
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 10/118 (8%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TI A ++ G+ GV ++R+SG +++ K+PKPRYA D K LD
Sbjct: 6 TIVAQATPPGRGGVGILRISGSKAAEVAQALLG----KLPKPRYADYLPFRDTDGKA-LD 60
Query: 89 EGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 61 QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVAMPGLRIARPGEFSERAFLN 118
>gi|320539849|ref|ZP_08039508.1| GTP-binding protein with a role in modification of tRNA [Serratia
symbiotica str. Tucson]
gi|320030035|gb|EFW12055.1| GTP-binding protein with a role in modification of tRNA [Serratia
symbiotica str. Tucson]
Length = 454
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 121/349 (34%), Positives = 181/349 (51%), Gaps = 69/349 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++R+SG K +A K+ KPRYA D V+ + LD+G+ LWFP
Sbjct: 15 GRGGIGILRISGSKA----KEVALALLGKLPKPRYADFLPFRD-VAGITLDQGIALWFPA 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRVLALPGVRIARPGEFSERAFINDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + A++ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSAMNSLQGAFSTRIYQLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +G+ + L++VR
Sbjct: 186 --------DGKIEAQL-----------NGVMAA----------------------LDSVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ Q GS+ +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 GEARQ--GSL-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI----IETEGNLLEKNNQ 443
TTRDV+ +H+ I G P+ ++DTAGLR + ++ IE N +E+ ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADR 298
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
++ +TI A ++ G+ G+ ++R+SG K +A K+PKPRYA D V+
Sbjct: 1 MSTTDTIVAQATPPGRGGIGILRISGSKA----KEVALALLGKLPKPRYADFLPFRD-VA 55
Query: 84 KVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRN 138
+ LD+G+ LWFP + G V+ + GP L+ LK + P ++++P S R
Sbjct: 56 GITLDQGIALWFPAPNSFTGEDVLELQGHGGPVILDLLLKRVLALPGVRIARPGEFSERA 115
Query: 139 IVD 141
++
Sbjct: 116 FIN 118
>gi|295691564|ref|YP_003595257.1| tRNA modification GTPase TrmE [Caulobacter segnis ATCC 21756]
gi|295433467|gb|ADG12639.1| tRNA modification GTPase TrmE [Caulobacter segnis ATCC 21756]
Length = 446
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 131/328 (39%), Positives = 172/328 (52%), Gaps = 68/328 (20%)
Query: 108 VSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDC 167
+SGP TL ++++A + PR A+LR + V LDE L L F P S+TGED
Sbjct: 22 ISGPATLRTVEALAG----RAPAPRMAALRKLRH--DGVELDEALVLRFEGPASYTGEDS 75
Query: 168 CEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETE 227
EF VHG AV+ A+L AL+ L LR AEPGEF++RAF N KLDL Q E + DLI AETE
Sbjct: 76 AEFHVHGGRAVVEALLSALSGLG-LRLAEPGEFTRRAFENGKLDLAQAEGVADLIDAETE 134
Query: 228 LQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLH 287
QR++AL Q+ G L Q Y WR L+++SLA +EA +DF ++++ E+
Sbjct: 135 AQRRQALGQVGGALSQRYDRWRDLLVQSLAMLEAAVDFPDEDLPEE-------------- 180
Query: 288 GSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGS 347
R R G++ V+ A D S + D
Sbjct: 181 ------------VAERARPGLR-VLAEELDAALADVSRGRRVRD---------------- 211
Query: 348 IEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKH 407
G RI +VG PN GKS+L+N L ++ +IVT PGTTRDVIE
Sbjct: 212 -----------GYRI------ALVGAPNAGKSTLLNGLVERDAAIVTDTPGTTRDVIEVP 254
Query: 408 LDIGGYPVILLDTAGLRTTTSDIIETEG 435
L +GGY V++ DTAGLR T D IE EG
Sbjct: 255 LVLGGYRVLIADTAGLR-ETEDAIEAEG 281
>gi|357386341|ref|YP_004901065.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pelagibacterium
halotolerans B2]
gi|351594978|gb|AEQ53315.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pelagibacterium
halotolerans B2]
Length = 435
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 128/343 (37%), Positives = 179/343 (52%), Gaps = 64/343 (18%)
Query: 102 GVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNS 161
G +VIR+SGP A++ + C ++ KPR +L+ + P + LD+GL FP P+S
Sbjct: 18 GGAVIRLSGPTAFEAVERI-C---GQLPKPRALALKTLKHPQTGEALDQGLVAVFPGPHS 73
Query: 162 FTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDL 221
FTGEDC EFQVHGS A + AIL ALT + A G+F++RAF N KLDLT E LGDL
Sbjct: 74 FTGEDCAEFQVHGSPAGVKAILSALTTHCDVALAGAGDFTRRAFENGKLDLTAVEGLGDL 133
Query: 222 IQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRS 281
+ AETE QR++AL +++G L + WR L+L + A +EA +DFS+ ED++ + +
Sbjct: 134 LAAETESQRRQALSRLEGGLADQIAVWRSLLLHARAEIEARLDFSD----EDDVPFELPA 189
Query: 282 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQV 341
V +L G L++ A D R ++
Sbjct: 190 HFVA---------DLQTLAG-----------ALSAARATYD---------------RGRI 214
Query: 342 VQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTR 401
V + G RI V+ G PN GKSSL+N L ++IVT+ GTTR
Sbjct: 215 V--------------REGFRI------VLAGAPNAGKSSLLNRLAGSDVAIVTAEAGTTR 254
Query: 402 DVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKNNQQ 444
D + +D+GG V L DTAGLR T S + E EG + + Q
Sbjct: 255 DTKDVAIDLGGQYVTLTDTAGLRDTIS-LAEGEGIVRARKAMQ 296
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TI ALS+G G +VIR+SGP A++ + C ++PKPR +L+ + P + L
Sbjct: 5 KTIAALSTGSLPSGGAVIRLSGPTAFEAVERI-C---GQLPKPRALALKTLKHPQTGEAL 60
Query: 88 DEGLCLWFP 96
D+GL FP
Sbjct: 61 DQGLVAVFP 69
>gi|407772660|ref|ZP_11119962.1| tRNA modification GTPase TrmE [Thalassospira profundimaris WP0211]
gi|407284613|gb|EKF10129.1| tRNA modification GTPase TrmE [Thalassospira profundimaris WP0211]
Length = 457
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 124/337 (36%), Positives = 174/337 (51%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV+VIR+SGP ++ L A + KPR+A I DP S LD+ + ++F
Sbjct: 16 GRAGVAVIRLSGPRSVAVL--CALLGRDTMPKPRHAIYAPIRDPKSHERLDDAVAIYFQG 73
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E VHG AVI +L L++ GLR A+PGE+++RAF N K+DLT
Sbjct: 74 PASFTGEDVVELHVHGGRAVIEGVLDCLSRQDGLRVADPGEYTRRAFENGKMDLT----- 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
S E D +I+
Sbjct: 129 ---------------------------------------SAEGIAD-----LIDAETAAQ 144
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R V Q+ G + E G R R + LA +EA IDF DE + D I+ V
Sbjct: 145 RRQAVRQMAGELGTLYE-----GWRARL----MKALAHIEADIDFP-DEDLPDGIVPVVH 194
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ +++H+ N+ G R+R G + VI+G PN GKSSL+N L Q+ +IV+ I G
Sbjct: 195 GDLRAVNDEVKRHLA-DNRRGERLREGFQIVILGAPNAGKSSLLNRLAQRDAAIVSEIAG 253
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLD+GG+PV ++DTAGLR + D+IE+EG
Sbjct: 254 TTRDMIEVHLDLGGFPVTMVDTAGLR-ESGDVIESEG 289
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 143/292 (48%), Gaps = 65/292 (22%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
+A + TIFALSSG G+ GV+VIR+SGP ++ L A +PKPR+A I DP S
Sbjct: 2 IASRETIFALSSGAGRAGVAVIRLSGPRSVAVL--CALLGRDTMPKPRHAIYAPIRDPKS 59
Query: 84 KVVLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPV 143
LD+ + ++F GP A + + V + R ++
Sbjct: 60 HERLDDAVAIYF-------------QGP---------ASFTGEDVVELHVHGGRAVI--- 94
Query: 144 SEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKR 203
E VLD CL ++ GLR A+PGE+++R
Sbjct: 95 -EGVLD---CL--------------------------------SRQDGLRVADPGEYTRR 118
Query: 204 AFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYI 263
AF N K+DLT E + DLI AET QR++A+ QM G L LY WR ++++LA +EA I
Sbjct: 119 AFENGKMDLTSAEGIADLIDAETAAQRRQAVRQMAGELGTLYEGWRARLMKALAHIEADI 178
Query: 264 DFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA 315
DF DE + D I+ V + ++ +++H+ N+ G R+R G + VI A
Sbjct: 179 DFP-DEDLPDGIVPVVHGDLRAVNDEVKRHLA-DNRRGERLREGFQIVILGA 228
>gi|393245968|gb|EJD53477.1| tRNA modification GTPase TrmE [Auricularia delicata TFB-10046 SS5]
Length = 466
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 124/341 (36%), Positives = 173/341 (50%), Gaps = 64/341 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSM----ACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCL 154
GK GV+V R+SGPD L A +++ + P+ + KP +VDP ++ LD+GL +
Sbjct: 24 GKAGVAVYRISGPDALTAYRALVRPTSRAPETQPPKPWKLHRCTVVDPDNDSALDDGLAV 83
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
+F P S+TG D E +H A+ A+LGAL ++PG RPA PGEF++ A N K+
Sbjct: 84 FFAGPRSYTGLDTLELHLHSGRALCAAVLGALARVPGCRPALPGEFTRAALSNGKM---- 139
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
DL QAE L+ L E +
Sbjct: 140 -----DLTQAE--------------GLRDLLDA------------------------ETD 156
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
V V G K +E IR+GI + LA VEA IDF E E IE+
Sbjct: 157 AQRRVARAVAG--GKTRKTME-------DIRAGI--IGALARVEALIDFGEGEDIEEGTW 205
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
+ + L G I++H++ + G +R+GI+ I G PN GKSSL NF Q+ ++VT
Sbjct: 206 DDAVRRARTLRGIIQQHLD-DGRRGEILRAGIRVAIFGPPNAGKSSLFNFFAQRDAALVT 264
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
+PGTTRDV+E +D+ G PVIL+DTAGLR TT D++E G
Sbjct: 265 PLPGTTRDVLELSIDLAGMPVILVDTAGLR-TTEDVVEKMG 304
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 139/300 (46%), Gaps = 69/300 (23%)
Query: 17 FSRRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSM----ACYPDQKVPKPRY 72
FS H + T FAL+S GK GV+V R+SGPD L A +++ + P+ + PKP
Sbjct: 6 FSTATRH---RQTFFALASPPGKAGVAVYRISGPDALTAYRALVRPTSRAPETQPPKPWK 62
Query: 73 ASLRNIVDPVSKVVLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPR 132
+VDP + LD+GL ++F +GP + L ++
Sbjct: 63 LHRCTVVDPDNDSALDDGLAVFF-------------AGPRSYTGLDTL------------ 97
Query: 133 YASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGL 192
E +H A+ A+LGAL ++PG
Sbjct: 98 ------------------------------------ELHLHSGRALCAAVLGALARVPGC 121
Query: 193 RPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLI 252
RPA PGEF++ A N K+DLTQ E L DL+ AET+ QR+ A G ++ + R I
Sbjct: 122 RPALPGEFTRAALSNGKMDLTQAEGLRDLLDAETDAQRRVARAVAGGKTRKTMEDIRAGI 181
Query: 253 LESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
+ +LA VEA IDF E E IE+ + + L G I++H++ + G +R+GI+ I
Sbjct: 182 IGALARVEALIDFGEGEDIEEGTWDDAVRRARTLRGIIQQHLD-DGRRGEILRAGIRVAI 240
>gi|302510559|ref|XP_003017231.1| hypothetical protein ARB_04108 [Arthroderma benhamiae CBS 112371]
gi|291180802|gb|EFE36586.1| hypothetical protein ARB_04108 [Arthroderma benhamiae CBS 112371]
Length = 578
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 178/346 (51%), Gaps = 77/346 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEV----VLDEG-LC 153
G+ +++IR+SGPD + ++ P++K+ KPR+A+LR I +P V LD G L
Sbjct: 39 GRAAIAIIRISGPDCIPIYNALC--PNRKLPKPRFAALRTIYEPGKPVSADNALDSGALV 96
Query: 154 LWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTK--LPG------LRPAEPGEFSKRAF 205
FP PN+ TGED E VHG AVI +IL A+ K PG +R AEPGEF++RAF
Sbjct: 97 FHFPAPNTVTGEDVLELHVHGGPAVIKSILSAIPKCATPGDAPSASIRYAEPGEFTRRAF 156
Query: 206 FNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDF 265
N++LDL Q EALG+ + A+TE QR+ A+ L Y +W
Sbjct: 157 LNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDTLSTRYEQW----------------- 199
Query: 266 SEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSE 325
R Q++ G +E A IDFSE
Sbjct: 200 --------------RKQLLYARGELE---------------------------ALIDFSE 218
Query: 326 DEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLM 382
D+ + D+ +++V QV L I HIE ++K G +RSGIK ++G PN GKSSL+
Sbjct: 219 DQHFDESVDDFISSVTGQVDSLLHQINLHIENASK-GELLRSGIKVALLGAPNAGKSSLL 277
Query: 383 NFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428
N + + +IV+S GTTRD+++ +D+GG+ D AGLR+ S
Sbjct: 278 NQIVGRDAAIVSSEEGTTRDIVDVGIDLGGWLCKFGDMAGLRSKLS 323
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 106/292 (36%), Positives = 149/292 (51%), Gaps = 70/292 (23%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TI+ALS+ G+ +++IR+SGPD + ++ P++K+PKPR+A+LR I +P V D
Sbjct: 30 TIYALSTAPGRAAIAIIRISGPDCIPIYNALC--PNRKLPKPRFAALRTIYEPGKPVSAD 87
Query: 89 EGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVL 148
NAL S A
Sbjct: 88 --------------------------NALDSGA--------------------------- 94
Query: 149 DEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTK--LPG------LRPAEPGEF 200
L FP PN+ TGED E VHG AVI +IL A+ K PG +R AEPGEF
Sbjct: 95 ---LVFHFPAPNTVTGEDVLELHVHGGPAVIKSILSAIPKCATPGDAPSASIRYAEPGEF 151
Query: 201 SKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVE 260
++RAF N++LDL Q EALG+ + A+TE QR+ A+ L Y +WR+ +L + +E
Sbjct: 152 TRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDTLSTRYEQWRKQLLYARGELE 211
Query: 261 AYIDFSEDEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK 309
A IDFSED+ + D+ +++V QV L I HIE ++K G +RSGIK
Sbjct: 212 ALIDFSEDQHFDESVDDFISSVTGQVDSLLHQINLHIENASK-GELLRSGIK 262
>gi|407778220|ref|ZP_11125485.1| tRNA modification GTPase TrmE [Nitratireductor pacificus pht-3B]
gi|407299901|gb|EKF19028.1| tRNA modification GTPase TrmE [Nitratireductor pacificus pht-3B]
Length = 439
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 123/330 (37%), Positives = 166/330 (50%), Gaps = 64/330 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV++IR+SGP +AL +MA +V R A L +I +LD GL L+FP P+
Sbjct: 17 AGVAIIRLSGPGVTDALAAMAG----EVPPARRARLTDIRRE-DGALLDRGLILFFPAPH 71
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDC E +HG AV+ A+L L P R AE GEF++RAF N KLDLT EAL D
Sbjct: 72 SFTGEDCGELHLHGGRAVVQAVLDLLGHRPDFRAAEAGEFTRRAFLNGKLDLTGAEALAD 131
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI AETE Q + AL VR
Sbjct: 132 LIAAETEAQHRFALAS----------------------------------------GDVR 151
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
Q QL+ + + +R R A +EA +DF+++E + ++ +
Sbjct: 152 HQ--QLYAGWRRTL-------IRAR---------AMIEAELDFADEEDVPGSVSGMAWRE 193
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
+ L + KH + + IR G + VI+G PN GKSSL+N + ++ I+IVT PGTT
Sbjct: 194 IEDLCSQMAKHADGYRDAEI-IRDGFRVVILGAPNAGKSSLLNAMARRDIAIVTDEPGTT 252
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
RDV+E LDIGG VI+ DTAG+R I
Sbjct: 253 RDVLEAVLDIGGAKVIVTDTAGIRANPGRI 282
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
+ ++ TIFALSSG GV++IR+SGP +AL +MA +VP R A L +I
Sbjct: 1 MQMRETIFALSSGGLPAGVAIIRLSGPGVTDALAAMAG----EVPPARRARLTDIRRE-D 55
Query: 84 KVVLDEGLCLWFP 96
+LD GL L+FP
Sbjct: 56 GALLDRGLILFFP 68
>gi|440228555|ref|YP_007335646.1| tRNA modification GTPase TrmE [Rhizobium tropici CIAT 899]
gi|440040066|gb|AGB73100.1| tRNA modification GTPase TrmE [Rhizobium tropici CIAT 899]
Length = 462
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 124/335 (37%), Positives = 176/335 (52%), Gaps = 65/335 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+V+R+SG +A +S+A V PR A+L+ I + +++D L L FP P
Sbjct: 41 AGVAVVRISGNRAFHAAESLAG----AVPMPRQAALKTI-RTRNGLIIDRALVLTFPGPA 95
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDC E VHG AV+NA+L L+ R AE GEFS+RA N K+DL + E L D
Sbjct: 96 SFTGEDCVEIHVHGGKAVVNALLDELSSFENFRLAEHGEFSRRALENGKMDLVEVEGLAD 155
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI AETE+Q R+L +E A
Sbjct: 156 LISAETEMQ-------------------RRLAMEHAA----------------------- 173
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
G + +L N+ R+ A +EA +DF++++ + ++ + V +
Sbjct: 174 -------GGLS---DLYNRWADRLTR------ARALIEAELDFADEDDVPGSVSDMVWAD 217
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
+ QLH + H+ ++ G IR G+K VI G PN GKSSLMN L +++++IVT I GTT
Sbjct: 218 MKQLHRELSDHLAGAD-LGEIIRDGLKVVIAGPPNAGKSSLMNALAKREVAIVTDIAGTT 276
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
RDV+ L+I GY V L DTAGLR T++I+E EG
Sbjct: 277 RDVLHVDLNIEGYAVKLYDTAGLR-ETNEIVEREG 310
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
LA TI+ALSSG GV+V+R+SG +A +S+A VP PR A+L+ I +
Sbjct: 25 LATGETIYALSSGGLPAGVAVVRISGNRAFHAAESLAG----AVPMPRQAALKTI-RTRN 79
Query: 84 KVVLDEGLCLWFP 96
+++D L L FP
Sbjct: 80 GLIIDRALVLTFP 92
>gi|190171236|gb|ACE63688.1| ThdF [Enterobacter radicincitans]
Length = 439
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +++ K+ KPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISGVKARDVAQAVLG----KLPKPRYADYLPFQD-ADGSALDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 178
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 179 ---------GKIEAQL-------------------------------NDVIAD--LDAVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 273
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++R+SG + +++ K+PKPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISGVKARDVAQAVLG----KLPKPRYADYLPFQD-ADGSALDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 110
>gi|152972614|ref|YP_001337760.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|365141182|ref|ZP_09347037.1| tRNA modification GTPase mnmE [Klebsiella sp. 4_1_44FAA]
gi|386037252|ref|YP_005957165.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae KCTC 2242]
gi|424833081|ref|ZP_18257809.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|425093998|ref|ZP_18497082.1| tRNA modification GTPase mnmE [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|166200482|sp|A6TG09.1|MNME_KLEP7 RecName: Full=tRNA modification GTPase MnmE
gi|150957463|gb|ABR79493.1| tRNA modification GTPase [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|339764380|gb|AEK00601.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae KCTC 2242]
gi|363653027|gb|EHL92020.1| tRNA modification GTPase mnmE [Klebsiella sp. 4_1_44FAA]
gi|405610494|gb|EKB83298.1| tRNA modification GTPase mnmE [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|414710530|emb|CCN32234.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
Length = 454
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +++ K+ KPRYA D V LD+G+ LWFP
Sbjct: 15 GRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFND-VDGTPLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E++ D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NEVMAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDANDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG + +++ K+PKPRYA D V L
Sbjct: 5 DTIVAQATPPGRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFND-VDGTPL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 118
>gi|424931082|ref|ZP_18349454.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|425083883|ref|ZP_18486980.1| tRNA modification GTPase mnmE [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|428931902|ref|ZP_19005490.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae JHCK1]
gi|449049131|ref|ZP_21731380.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae hvKP1]
gi|405598375|gb|EKB71604.1| tRNA modification GTPase mnmE [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|407805269|gb|EKF76520.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|426307599|gb|EKV69677.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae JHCK1]
gi|448876881|gb|EMB11858.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae hvKP1]
Length = 454
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +++ K+ KPRYA D V LD+G+ LWFP
Sbjct: 15 GRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFND-VDGTPLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E++ D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NEVMAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDANDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG + +++ K+PKPRYA D V L
Sbjct: 5 DTIVAQATPPGRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFND-VDGTPL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 118
>gi|238897217|ref|YP_002921965.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|330005209|ref|ZP_08305168.1| tRNA modification GTPase TrmE [Klebsiella sp. MS 92-3]
gi|419974156|ref|ZP_14489577.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419979443|ref|ZP_14494734.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419986261|ref|ZP_14501395.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419991939|ref|ZP_14506900.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419996964|ref|ZP_14511763.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420004150|ref|ZP_14518790.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420009885|ref|ZP_14524364.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420015081|ref|ZP_14529384.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420021406|ref|ZP_14535586.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420026940|ref|ZP_14540938.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420032738|ref|ZP_14546550.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420039440|ref|ZP_14553074.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420044445|ref|ZP_14557925.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420050371|ref|ZP_14563671.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420055759|ref|ZP_14568923.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420062045|ref|ZP_14575025.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420066347|ref|ZP_14579148.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420071395|ref|ZP_14584041.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420076697|ref|ZP_14589167.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420085375|ref|ZP_14597602.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|428939000|ref|ZP_19012118.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae VA360]
gi|238549547|dbj|BAH65898.1| tRNA modification GTPase [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|328536341|gb|EGF62703.1| tRNA modification GTPase TrmE [Klebsiella sp. MS 92-3]
gi|397346738|gb|EJJ39851.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397348587|gb|EJJ41686.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397348945|gb|EJJ42042.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397362325|gb|EJJ54976.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397363828|gb|EJJ56464.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397366966|gb|EJJ59580.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397377129|gb|EJJ69370.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397380027|gb|EJJ72213.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397386789|gb|EJJ78852.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397394326|gb|EJJ86057.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397396778|gb|EJJ88464.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397403130|gb|EJJ94715.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397411340|gb|EJK02599.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397411879|gb|EJK03124.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397421379|gb|EJK12399.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397429155|gb|EJK19875.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397430109|gb|EJK20810.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397440367|gb|EJK30776.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397447027|gb|EJK37231.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397449253|gb|EJK39396.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|426304757|gb|EKV66894.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae VA360]
Length = 454
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +++ K+ KPRYA D V LD+G+ LWFP
Sbjct: 15 GRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFND-VDGTPLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E++ D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NEVMAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDANDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG + +++ K+PKPRYA D V L
Sbjct: 5 DTIVAQATPPGRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFND-VDGTPL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 118
>gi|425074171|ref|ZP_18477274.1| tRNA modification GTPase mnmE [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425084807|ref|ZP_18487900.1| tRNA modification GTPase mnmE [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405595636|gb|EKB69006.1| tRNA modification GTPase mnmE [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405608222|gb|EKB81173.1| tRNA modification GTPase mnmE [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
Length = 454
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +++ K+ KPRYA D V LD+G+ LWFP
Sbjct: 15 GRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFND-VDGTPLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E++ D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NEVMAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDANDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG + +++ K+PKPRYA D V L
Sbjct: 5 DTIVAQATPPGRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFND-VDGTPL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 118
>gi|262040470|ref|ZP_06013713.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259042223|gb|EEW43251.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 454
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +++ K+ KPRYA D V LD+G+ LWFP
Sbjct: 15 GRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFND-VDGTPLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+ + QLH E++ D L+ VR
Sbjct: 187 GKIE-AQLH---------------------------------------EVMAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDANDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG + +++ K+PKPRYA D V L
Sbjct: 5 DTIVAQATPPGRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFND-VDGTPL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 118
>gi|190171246|gb|ACE63693.1| ThdF [Escherichia hermannii]
Length = 438
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/332 (34%), Positives = 173/332 (52%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +++ K+ KPRYA D V LD+G+ LWFP
Sbjct: 6 GRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFRD-VDNTALDQGIALWFPG 60
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PG+R A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 61 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLNDKLDLAQAEAI 120
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G ++ + + VEA IDF ++EI + L+
Sbjct: 121 ADLIDASSEQAARSALNSLQGAFSTRVNQLVEALTHLRIYVEAAIDFPDEEI---DFLSD 177
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + ++++ D L+ VR
Sbjct: 178 ---------GKIEAQL-------------------------------NDVMAD--LDAVR 195
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 196 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 240
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 241 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 272
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++R+SG + +++ K+PKPRYA D V LD+G+ LWFP
Sbjct: 6 GRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFRD-VDNTALDQGIALWFPG 60
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P +++KP S R ++
Sbjct: 61 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLN 109
>gi|419959156|ref|ZP_14475213.1| tRNA modification GTPase TrmE [Enterobacter cloacae subsp. cloacae
GS1]
gi|388606125|gb|EIM35338.1| tRNA modification GTPase TrmE [Enterobacter cloacae subsp. cloacae
GS1]
Length = 454
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKD-ADGTPLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + ++++ D LN VR
Sbjct: 187 ---------GKIEAQL-------------------------------NQVMND--LNAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 281
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKD-ADGTPL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P +++KP S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLN 118
>gi|50308583|ref|XP_454294.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643429|emb|CAG99381.1| KLLA0E07657p [Kluyveromyces lactis]
Length = 501
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/354 (34%), Positives = 183/354 (51%), Gaps = 78/354 (22%)
Query: 92 CLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEG 151
L P + +++IR+SG + LK ++ +K + R +R++ DP + ++DE
Sbjct: 41 ALSTPSNQHSAIAIIRISGTHSKYILKKLSP---KKPLRQRKPMIRSLYDPKASTLIDEA 97
Query: 152 LCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAE-------PGEFSKRA 204
L L+FP+P +FTGED E +HG A+I A AL + GLR +E PGEFS+RA
Sbjct: 98 LVLYFPQPRTFTGEDLVELHLHGGKAIIKA---ALNSIQGLRDSERDIRMAMPGEFSRRA 154
Query: 205 FFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLK-QLYSEWRQLILESLASVEAYI 263
F N K+DL + E++ ++I ++TELQR ALH GN ++ EWRQ
Sbjct: 155 FQNGKMDLLKLESINNMIHSDTELQRLSALH---GNQTVDIFHEWRQ------------- 198
Query: 264 DFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDF 323
EIIE +A + A IDF
Sbjct: 199 -----EIIEQ----------------------------------------IAKLTAIIDF 213
Query: 324 SEDEIIED--NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSL 381
ED ED +I+N +++QL+ + + + ++ V + GIK ++GEPN GKSSL
Sbjct: 214 GEDIETEDIDSIVNGANDKLLQLYKKVTRFMVKLDRMAV-LNDGIKLTLLGEPNSGKSSL 272
Query: 382 MNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
+N + Q ++IV+ IPGTTRD I+ +DI G+ IL DTAG+R TSD IE +G
Sbjct: 273 VNEISQDDVAIVSDIPGTTRDSIDVMMDINGFKCILTDTAGIRQGTSDSIEIKG 326
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 133/285 (46%), Gaps = 68/285 (23%)
Query: 29 TIFALSS-GHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
T++ALS+ + +++IR+SG + LK ++ +K + R +R++ DP + ++
Sbjct: 38 TVYALSTPSNQHSAIAIIRISGTHSKYILKKLSP---KKPLRQRKPMIRSLYDPKASTLI 94
Query: 88 DEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVV 147
DE L L+FP +PR + ++V E+
Sbjct: 95 DEALVLYFP---------------------------------QPRTFTGEDLV----ELH 117
Query: 148 LDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFN 207
L G + NS G E + + +PG EFS+RAF N
Sbjct: 118 LHGGKAIIKAALNSIQGLRDSERDIRMA-------------MPG-------EFSRRAFQN 157
Query: 208 NKLDLTQTEALGDLIQAETELQRQKALHQMKGNLK-QLYSEWRQLILESLASVEAYIDFS 266
K+DL + E++ ++I ++TELQR ALH GN ++ EWRQ I+E +A + A IDF
Sbjct: 158 GKMDLLKLESINNMIHSDTELQRLSALH---GNQTVDIFHEWRQEIIEQIAKLTAIIDFG 214
Query: 267 EDEIIE--DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK 309
ED E D+I+N +++QL+ + + + ++ V + GIK
Sbjct: 215 EDIETEDIDSIVNGANDKLLQLYKKVTRFMVKLDRMAV-LNDGIK 258
>gi|383936079|ref|ZP_09989509.1| tRNA modification GTPase mnmE [Rheinheimera nanhaiensis E407-8]
gi|383702835|dbj|GAB59600.1| tRNA modification GTPase mnmE [Rheinheimera nanhaiensis E407-8]
Length = 458
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 120/335 (35%), Positives = 168/335 (50%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IR+SGP T K++A ++ KPRYA D S+ VLD+G+ L+FP
Sbjct: 15 GRAGVGIIRISGPHT----KAVAQAILHRIPKPRYAEYLPFFDS-SKQVLDQGIALYFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LP +R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVLLDMLLKQVLALPNVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E
Sbjct: 130 ADLIDASSE-------------------------------------------------QA 140
Query: 279 VRSQVVQLHGSIEKHI-ELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI--IEDNILN 335
RS + L G +HI EL K + +R VEA IDF ++EI + D +
Sbjct: 141 ARSAMQSLQGEFSRHIHELVEKV-IHLR---------MYVEAAIDFPDEEIDFLSDGKVA 190
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
++++ H++ G +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 191 ADLAEIIDYLA----HVKKQATQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 246
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR T +
Sbjct: 247 IAGTTRDVLREHIHIDGMPLHIIDTAGLREATDQV 281
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI AL++ G+ GV +IR+SGP T K++A ++PKPRYA D SK VL
Sbjct: 5 DTIAALATAPGRAGVGIIRISGPHT----KAVAQAILHRIPKPRYAEYLPFFDS-SKQVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLNA-LKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ L+FP + G V+ + GP L+ LK + P+ ++++P S R ++
Sbjct: 60 DQGIALYFPGPNSFTGEDVLELQGHGGPVLLDMLLKQVLALPNVRIARPGEFSERAFLN 118
>gi|190171244|gb|ACE63692.1| ThdF [Escherichia hermannii]
Length = 438
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/332 (34%), Positives = 173/332 (52%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +++ K+ KPRYA D V LD+G+ LWFP
Sbjct: 6 GRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFRD-VDNTALDQGIALWFPG 60
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PG+R A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 61 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLNDKLDLAQAEAI 120
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G ++ + + VEA IDF ++EI + L+
Sbjct: 121 ADLIDASSEQAARSALNSLQGAFSTRVNQLVEALTHLRIYVEAAIDFPDEEI---DFLSD 177
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + ++++ D L+ VR
Sbjct: 178 ---------GKIEAQL-------------------------------NDVMAD--LDAVR 195
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 196 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 240
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 241 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 272
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++R+SG + +++ K+PKPRYA D V LD+G+ LWFP
Sbjct: 6 GRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFRD-VDNTALDQGIALWFPG 60
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P +++KP S R ++
Sbjct: 61 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLN 109
>gi|317050193|ref|YP_004117841.1| tRNA modification GTPase TrmE [Pantoea sp. At-9b]
gi|316951810|gb|ADU71285.1| tRNA modification GTPase TrmE [Pantoea sp. At-9b]
Length = 454
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +++ K+ KPRYA D V LD+G+ LWFP
Sbjct: 15 GRGGVGILRISGAKAADIARAVLG----KLPKPRYADYLPFADSDGSV-LDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRIVALPGVRIAQPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + A++ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSAVNSLQGAFSVRINALVEALTYLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + + +I D LN VR
Sbjct: 186 --------DGKIEAQL-------------------------------NAVIGD--LNAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDANDEV 281
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 80/168 (47%), Gaps = 12/168 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG + +++ K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGAKAADIARAVLG----KLPKPRYADYLPFADS-DGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVDP 142
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVALPGVRIAQPGEFSERAFLND 119
Query: 143 VSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAV-INAILGALTKL 189
++ E + + + G+ +V INA++ ALT L
Sbjct: 120 KLDLAQAEAIADLIDASSEQAARSAVN-SLQGAFSVRINALVEALTYL 166
>gi|377577810|ref|ZP_09806791.1| tRNA modification GTPase MnmE [Escherichia hermannii NBRC 105704]
gi|377541048|dbj|GAB51956.1| tRNA modification GTPase MnmE [Escherichia hermannii NBRC 105704]
Length = 454
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/332 (34%), Positives = 173/332 (52%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +++ K+ KPRYA D V LD+G+ LWFP
Sbjct: 15 GRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFRD-VDNTALDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PG+R A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G ++ + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSTRVNQLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + ++++ D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVMAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG + +++ K+PKPRYA D V L
Sbjct: 5 DTIVAQATPPGRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFRD-VDNTAL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P +++KP S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLN 118
>gi|190171194|gb|ACE63667.1| ThdF [Enterobacter cowanii]
Length = 439
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +++ K+ KPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLAFQD-ADGSALDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 178
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + + +I D L+ VR
Sbjct: 179 ---------GKIEAQL-------------------------------NNVISD--LDAVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 273
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++R+SG + +++ K+PKPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLAFQD-ADGSALDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P +++KP S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLN 110
>gi|258569587|ref|XP_002543597.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237903867|gb|EEP78268.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 571
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 126/364 (34%), Positives = 181/364 (49%), Gaps = 89/364 (24%)
Query: 91 LCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDP----VSEV 146
+C P G+ ++++R+SGP K ++ D + KPRYASLR + +P +
Sbjct: 13 ICRRTP--GRAAIAIVRISGPACPQIYKGLSF--DSSLPKPRYASLRTLYEPGKPPSTNT 68
Query: 147 VLDEG-LCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL----------PGLRPA 195
VLD G L L+FP P + TGED E +HGS AVI A+L A+ K P +R A
Sbjct: 69 VLDSGALVLYFPAPKTVTGEDVLELHIHGSPAVIKAVLNAIPKCAGNGSEAGSQPSIRYA 128
Query: 196 EPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILES 255
EPGEF++RAF NN+LDL Q EALG+ + A+TE QR+ A+ L Y +W
Sbjct: 129 EPGEFTRRAFLNNRLDLPQIEALGNTLAADTEQQRRLAVRGTSDTLSARYEDW------- 181
Query: 256 LASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA 315
R Q++ G +E
Sbjct: 182 ------------------------RQQLLYARGELE------------------------ 193
Query: 316 SVEAYIDFSEDEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVG 372
A IDFSED+ + D+ + ++ QV +L I HIE ++K G +RSGIK ++G
Sbjct: 194 ---ALIDFSEDQHFDESVDDFMLSITKQVRKLLNQINVHIENASK-GELLRSGIKVALLG 249
Query: 373 EPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIE 432
PN GKSSL+N + ++ +IV+S GTTRD+++ +D LD AGLR+T S +I
Sbjct: 250 APNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVD--------LDMAGLRSTPSKVIG 301
Query: 433 TEGN 436
N
Sbjct: 302 ETDN 305
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 114/292 (39%), Gaps = 86/292 (29%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVD----PVSKVVLDEG-LC 92
G+ ++++R+SGP K ++ D +PKPRYASLR + + P + VLD G L
Sbjct: 19 GRAAIAIVRISGPACPQIYKGLSF--DSSLPKPRYASLRTLYEPGKPPSTNTVLDSGALV 76
Query: 93 LWFPR------------HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIV 140
L+FP H +VI+ LNA+ A + S+P
Sbjct: 77 LYFPAPKTVTGEDVLELHIHGSPAVIKA----VLNAIPKCAGNGSEAGSQP--------- 123
Query: 141 DPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEF 200
+ + +P FT A L LP + A
Sbjct: 124 ------------SIRYAEPGEFTRR---------------AFLNNRLDLPQIE-ALGNTL 155
Query: 201 SKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVE 260
+ +L + T D + A E RQ+ L+ +G L+ L
Sbjct: 156 AADTEQQRRLAVRGT---SDTLSARYEDWRQQLLY-ARGELEAL---------------- 195
Query: 261 AYIDFSEDEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK 309
IDFSED+ + D+ + ++ QV +L I HIE ++K G +RSGIK
Sbjct: 196 --IDFSEDQHFDESVDDFMLSITKQVRKLLNQINVHIENASK-GELLRSGIK 244
>gi|397163091|ref|ZP_10486556.1| tRNA modification GTPase TrmE [Enterobacter radicincitans DSM
16656]
gi|396095238|gb|EJI92783.1| tRNA modification GTPase TrmE [Enterobacter radicincitans DSM
16656]
Length = 454
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +++ K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISGVKARDVAQAVLG----KLPKPRYADYLPFQD-ADGSALDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG + +++ K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRISGVKARDVAQAVLG----KLPKPRYADYLPFQD-ADGSAL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 118
>gi|418945720|ref|ZP_13498465.1| tRNA modification GTPase TrmE, partial [Escherichia coli O157:H43
str. T22]
gi|375318964|gb|EHS65265.1| tRNA modification GTPase TrmE, partial [Escherichia coli O157:H43
str. T22]
Length = 400
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|410074417|ref|XP_003954791.1| hypothetical protein KAFR_0A02180 [Kazachstania africana CBS 2517]
gi|372461373|emb|CCF55656.1| hypothetical protein KAFR_0A02180 [Kazachstania africana CBS 2517]
Length = 511
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 128/361 (35%), Positives = 178/361 (49%), Gaps = 82/361 (22%)
Query: 92 CLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSK------PRYASLRNIVDPV-- 143
L P K +SVIR+SG S A Y K+++ PR A LR + P
Sbjct: 33 ALSTPTGHKSAISVIRISG--------SHAKYIYHKLTRCSADPIPREAVLRKLYHPFEI 84
Query: 144 ---SEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLP------GLRP 194
++LD L L+F P SFTGED E VHG A+++++L A+ L +R
Sbjct: 85 INNKPLLLDSSLILFFQSPKSFTGEDILELHVHGGRAIVSSVLNAINLLHDRSSNFNIRY 144
Query: 195 AEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILE 254
A+PGEFSKRAF N+K DLT+ EA+ DLI A+TE QR+ L + G+ K L+ EWR L++
Sbjct: 145 AQPGEFSKRAFHNSKFDLTEVEAINDLINADTEAQRRSILSSLNGDNKLLFREWRSLLIT 204
Query: 255 SLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICL 314
+A + A IDF +D N + + + G K + L NK
Sbjct: 205 CMAQLTAIIDFGDD--------NDLSTSHDIIKGVSNKILGLKNKV-------------- 242
Query: 315 ASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEP 374
IDF +++ +ILN GIK V +G P
Sbjct: 243 ------IDFI-NKVERADILN----------------------------DGIKIVFMGSP 267
Query: 375 NVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETE 434
NVGKSSL+N + SIV+ IPGTTRD + ++IGG +I+ DTAG+R ++D IE
Sbjct: 268 NVGKSSLLNMVTNDDTSIVSDIPGTTRDSVSTLINIGGQKIIMTDTAGIRKESNDKIELL 327
Query: 435 G 435
G
Sbjct: 328 G 328
>gi|422380742|ref|ZP_16460916.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 57-2]
gi|324008034|gb|EGB77253.1| tRNA modification GTPase TrmE [Escherichia coli MS 57-2]
Length = 481
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 42 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 96
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 97 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 156
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 157 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 212
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 213 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 231
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 232 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 276
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 277 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 308
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 32 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVL 86
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 87 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 145
>gi|114571503|ref|YP_758183.1| tRNA modification GTPase TrmE [Maricaulis maris MCS10]
gi|122314956|sp|Q0AKE8.1|MNME_MARMM RecName: Full=tRNA modification GTPase MnmE
gi|114341965|gb|ABI67245.1| tRNA modification GTPase trmE [Maricaulis maris MCS10]
Length = 438
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 124/341 (36%), Positives = 169/341 (49%), Gaps = 73/341 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV+VIR+SG L ++A P +PR A+LR + D V +D GL LWFP
Sbjct: 13 GRSGVAVIRLSGGGAGGMLDALAGLP---RPQPRMATLRALRDSGGSV-MDRGLVLWFPG 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED EF VHG AVI+A+L AL + G PAE GEF++RAF N K
Sbjct: 69 PGSFTGEDSAEFHVHGGPAVIDAVLSALDE-AGAHPAEAGEFTRRAFENEK--------- 118
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
ID +E E + D I
Sbjct: 119 --------------------------------------------IDLTEAEGLADLIDAE 134
Query: 279 VRSQVVQLHGSIEKHIELSNKCGV--RIRSGIKS--VICLASVEAYIDFSEDEIIEDNIL 334
Q VQ LS G R+ G + + +AS+E IDF ++ + D +
Sbjct: 135 TEGQRVQ---------ALSQMSGSLRRLYDGWRDALITAMASIEGEIDFPDEADVPDALS 185
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
+ + +L GS+ +H++ + G RIR G V++G PN GKSSL+N L ++ +IVT
Sbjct: 186 HAAYEPLSELIGSMFEHLD-DGRRGERIRIGFSIVLIGAPNAGKSSLLNCLARRDAAIVT 244
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IPGTTRD++E L +GG+PV++ DTAGLR D IE EG
Sbjct: 245 DIPGTTRDIVEVQLTLGGFPVVISDTAGLREAV-DAIEAEG 284
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ T++AL++ G+ GV+VIR+SG L ++A P P+PR A+LR + D
Sbjct: 1 MNTTVYALATPAGRSGVAVIRLSGGGAGGMLDALAGLP---RPQPRMATLRALRDS-GGS 56
Query: 86 VLDEGLCLWFPRHG 99
V+D GL LWFP G
Sbjct: 57 VMDRGLVLWFPGPG 70
>gi|190171322|gb|ACE63731.1| ThdF [Cronobacter sakazakii]
gi|190171326|gb|ACE63733.1| ThdF [Cronobacter sakazakii]
Length = 439
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG N +++ K+ K RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARNVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLSD 178
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 179 ---------GKIEAQL-------------------------------NEVIGD--LDAVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 273
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++RVSG N +++ K+PK RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARNVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 110
>gi|222530701|ref|YP_002574583.1| tRNA modification GTPase TrmE [Caldicellulosiruptor bescii DSM
6725]
gi|222457548|gb|ACM61810.1| tRNA modification GTPase TrmE [Caldicellulosiruptor bescii DSM
6725]
Length = 455
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 133/343 (38%), Positives = 181/343 (52%), Gaps = 73/343 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSK---PRYASLRNIVDPVSEVVLDEGLCLW 155
G G+ ++R+SG + + + + K K RYA+L ++ D + +DE + +
Sbjct: 14 GTGGIGIVRISGKNAFDIAQKLIRSRKYKTVKDIPTRYAALVDVYD--GDEFVDEAILIK 71
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
F PNS+TGED E Q HG + V+ IL A K G R A PGEF+KRAF N ++DL+Q
Sbjct: 72 FKSPNSYTGEDVVEIQSHGGMVVLKRILEAAIK-SGARHAMPGEFTKRAFLNGRIDLSQA 130
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
EA+ D+I ++T L +Q A KQL Q I E I +
Sbjct: 131 EAVIDIINSKTRLLQQNAA-------KQLKGMLSQRIEE----------------ISQLL 167
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSE---DEIIEDN 332
LN V AS+EA IDFSE DE+ +D
Sbjct: 168 LNMV-----------------------------------ASIEASIDFSEHEVDEVSKDE 192
Query: 333 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
IL T+ + + + IEK I+ S + G I+SGI +VIVG PNVGKSSL+N L +++ +I
Sbjct: 193 ILFTIDAALAK----IEKLIK-SYETGKAIKSGIYTVIVGRPNVGKSSLLNRLLKEEKAI 247
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
VT IPGTTRDVIE+ LDI G P+IL DTAG+R T DI+E G
Sbjct: 248 VTDIPGTTRDVIEEVLDIEGVPIILADTAGVR-KTEDIVEKIG 289
>gi|419765299|ref|ZP_14291537.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|397741807|gb|EJK89027.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
Length = 454
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 121/336 (36%), Positives = 175/336 (52%), Gaps = 73/336 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +++ K+ KPRYA D V LD+G+ LWFP
Sbjct: 15 GRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFND-VDGTPLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLAS----VEAYIDFSEDEIIEDN 274
DLI A +E + AL+ ++G ++S ++E+L VEA IDF ++EI +
Sbjct: 130 ADLIDASSEQAARSALNSLQG----VFSARVNHLVEALTHLRIYVEAAIDFPDEEI---D 182
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
L+ G IE + +E++ D L
Sbjct: 183 FLSD---------GKIEAQL-------------------------------NEVMAD--L 200
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
+ VR++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 201 DAVRAEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVT 245
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR ++
Sbjct: 246 DIAGTTRDVLREHIHIDGMPLHIIDTAGLRDANDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG + +++ K+PKPRYA D V L
Sbjct: 5 DTIVAQATPPGRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFND-VDGTPL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 118
>gi|71277760|ref|YP_271687.1| tRNA modification GTPase TrmE [Colwellia psychrerythraea 34H]
gi|123630481|sp|Q47U36.1|MNME_COLP3 RecName: Full=tRNA modification GTPase MnmE
gi|71143500|gb|AAZ23973.1| tRNA modification GTPase TrmE [Colwellia psychrerythraea 34H]
Length = 471
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 125/338 (36%), Positives = 179/338 (52%), Gaps = 64/338 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKS-MACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ GV +IRVSGP+ N ++ + P+ V K Y + VLD+G+ L+F
Sbjct: 18 GRGGVGIIRVSGPEAKNVAQAILGKLPE--VRKAEYLPFLDCTSTDKTQVLDQGIALYFK 75
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
PNSFTGED EFQ HG +++ +L + P + A+PGEFS++AF N+KLDLTQ EA
Sbjct: 76 APNSFTGEDVIEFQGHGGPVILDMLLKVILAQPKVIMAKPGEFSEQAFLNDKLDLTQAEA 135
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DLI + +E + ALH ++G+ +L +E + I+ VEA IDF E+EI
Sbjct: 136 IADLINSSSEQAARSALHSLQGDFSKLVNEMVESIIHLRMYVEAAIDFPEEEI------- 188
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
L++K +I + +K++I +ED V
Sbjct: 189 ----------------DFLADK---KIVTDLKAIISR--------------VED-----V 210
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
R Q Q GSI IR G++ VI G PN GKSSL+N L KQ +IVT I
Sbjct: 211 RKQAQQ--GSI-------------IREGMRVVIAGRPNAGKSSLLNALSGKQTAIVTDIA 255
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+ + + I G P+ ++DTAGLR + D++E G
Sbjct: 256 GTTRDVLAEQIHIDGMPLHIIDTAGLR-DSDDVVEKIG 292
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 12/102 (11%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS---KVVLDEGLCLW 94
G+ GV +IRVSGP+ N +++ K+P+ R A +D S VLD+G+ L+
Sbjct: 18 GRGGVGIIRVSGPEAKNVAQAILG----KLPEVRKAEYLPFLDCTSTDKTQVLDQGIALY 73
Query: 95 FPR-HGKCGVSVIRV---SGPDTLNA-LKSMACYPDQKVSKP 131
F + G VI GP L+ LK + P ++KP
Sbjct: 74 FKAPNSFTGEDVIEFQGHGGPVILDMLLKVILAQPKVIMAKP 115
>gi|422371345|ref|ZP_16451726.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 16-3]
gi|315296896|gb|EFU56184.1| tRNA modification GTPase TrmE [Escherichia coli MS 16-3]
Length = 475
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 36 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 90
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 91 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 150
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 151 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 206
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 207 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 225
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 226 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 270
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 271 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 302
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 26 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVL 80
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 81 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 139
>gi|190171188|gb|ACE63664.1| ThdF [Enterobacter cancerogenus]
Length = 439
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 173/332 (52%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKDS-DGTPLDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 178
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+++D L+ VR
Sbjct: 179 ---------GKIEAQL-------------------------------NEVMKD--LDAVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 273
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++R+SG L A + +A K+PKPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKDS-DGTPLDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P +++KP S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLN 110
>gi|190171332|gb|ACE63736.1| ThdF [Cronobacter sakazakii]
Length = 439
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + +++ K+ K RYA D + LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ANGTALDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLSD 178
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 179 ---------GKIEAQL-------------------------------NEVIGD--LDAVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 273
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++RVSG + +++ K+PK RYA D + LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ANGTALDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 110
>gi|419393961|ref|ZP_13934757.1| tRNA modification GTPase TrmE [Escherichia coli DEC15A]
gi|419399111|ref|ZP_13939871.1| tRNA modification GTPase TrmE [Escherichia coli DEC15B]
gi|419404356|ref|ZP_13945073.1| tRNA modification GTPase TrmE [Escherichia coli DEC15C]
gi|419409520|ref|ZP_13950202.1| tRNA modification GTPase TrmE [Escherichia coli DEC15D]
gi|419415077|ref|ZP_13955709.1| tRNA modification GTPase TrmE [Escherichia coli DEC15E]
gi|378233618|gb|EHX93704.1| tRNA modification GTPase TrmE [Escherichia coli DEC15A]
gi|378240192|gb|EHY00167.1| tRNA modification GTPase TrmE [Escherichia coli DEC15B]
gi|378243173|gb|EHY03120.1| tRNA modification GTPase TrmE [Escherichia coli DEC15C]
gi|378251489|gb|EHY11387.1| tRNA modification GTPase TrmE [Escherichia coli DEC15D]
gi|378256110|gb|EHY15963.1| tRNA modification GTPase TrmE [Escherichia coli DEC15E]
Length = 454
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|416284411|ref|ZP_11647257.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Shigella boydii ATCC
9905]
gi|320180048|gb|EFW54990.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Shigella boydii ATCC
9905]
Length = 454
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|300925531|ref|ZP_07141405.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 182-1]
gi|300418356|gb|EFK01667.1| tRNA modification GTPase TrmE [Escherichia coli MS 182-1]
Length = 478
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 39 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 93
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 94 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 153
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 154 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 210
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 211 ---------GKIEAQL-------------------------------NDVIAD--LDAVR 228
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 229 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 273
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 274 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 305
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 73/141 (51%), Gaps = 11/141 (7%)
Query: 6 KKAAKEKAVIFFSRRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQ 65
++A K +A S R + ++ +TI A ++ G+ GV ++R+SG L A + +A
Sbjct: 8 RRADKHRASATQSNR-NIMSDNDTIVAQATPPGRGGVGILRISG---LKA-REVAETVLG 62
Query: 66 KVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSM 120
K+PKPRYA D VLD+G+ LWFP + G V+ + GP L+ LK +
Sbjct: 63 KLPKPRYADYLPFKD-ADGSVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRI 121
Query: 121 ACYPDQKVSKPRYASLRNIVD 141
P ++++P S R ++
Sbjct: 122 LTIPGLRIARPGEFSERAFLN 142
>gi|218702556|ref|YP_002410185.1| tRNA modification GTPase TrmE [Escherichia coli IAI39]
gi|254811479|sp|B7NR09.1|MNME_ECO7I RecName: Full=tRNA modification GTPase MnmE
gi|218372542|emb|CAR20417.1| GTPase [Escherichia coli IAI39]
Length = 454
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|170681108|ref|YP_001746036.1| tRNA modification GTPase TrmE [Escherichia coli SMS-3-5]
gi|170767097|ref|ZP_02901550.1| tRNA modification GTPase TrmE [Escherichia albertii TW07627]
gi|194431305|ref|ZP_03063598.1| tRNA modification GTPase TrmE [Shigella dysenteriae 1012]
gi|218551237|ref|YP_002385029.1| tRNA modification GTPase TrmE [Escherichia fergusonii ATCC 35469]
gi|218691995|ref|YP_002400207.1| tRNA modification GTPase TrmE [Escherichia coli ED1a]
gi|222158416|ref|YP_002558555.1| tRNA modification GTPase trmE [Escherichia coli LF82]
gi|300824308|ref|ZP_07104424.1| tRNA modification GTPase TrmE [Escherichia coli MS 119-7]
gi|300903017|ref|ZP_07120959.1| tRNA modification GTPase TrmE [Escherichia coli MS 84-1]
gi|301305947|ref|ZP_07212029.1| tRNA modification GTPase TrmE [Escherichia coli MS 124-1]
gi|331649534|ref|ZP_08350620.1| tRNA modification GTPase TrmE [Escherichia coli M605]
gi|331665357|ref|ZP_08366258.1| tRNA modification GTPase TrmE [Escherichia coli TA143]
gi|331679805|ref|ZP_08380475.1| tRNA modification GTPase TrmE [Escherichia coli H591]
gi|366159304|ref|ZP_09459166.1| tRNA modification GTPase TrmE [Escherichia sp. TW09308]
gi|386621391|ref|YP_006140971.1| GTPase/tRNA-U34 5-formylation enzyme TrmE [Escherichia coli NA114]
gi|386626608|ref|YP_006146336.1| GTPase [Escherichia coli O7:K1 str. CE10]
gi|387609490|ref|YP_006098346.1| tRNA modification GTPase [Escherichia coli 042]
gi|387619013|ref|YP_006122035.1| tRNA modification GTPase TrmE [Escherichia coli O83:H1 str. NRG
857C]
gi|387831604|ref|YP_003351541.1| GTP-binding protein [Escherichia coli SE15]
gi|415864804|ref|ZP_11537776.1| tRNA modification GTPase TrmE [Escherichia coli MS 85-1]
gi|416338077|ref|ZP_11674311.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
WV_060327]
gi|416900238|ref|ZP_11929549.1| tRNA modification GTPase TrmE [Escherichia coli STEC_7v]
gi|417116749|ref|ZP_11967610.1| tRNA modification GTPase TrmE [Escherichia coli 1.2741]
gi|417664349|ref|ZP_12313928.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
AA86]
gi|417675411|ref|ZP_12324833.1| tRNA modification GTPase TrmE [Shigella dysenteriae 155-74]
gi|417692094|ref|ZP_12341299.1| tRNA modification GTPase TrmE [Shigella boydii 5216-82]
gi|418040392|ref|ZP_12678636.1| tRNA modification GTPase TrmE [Escherichia coli W26]
gi|419702554|ref|ZP_14230147.1| tRNA modification GTPase TrmE [Escherichia coli SCI-07]
gi|419867135|ref|ZP_14389473.1| tRNA modification GTPase TrmE [Escherichia coli O103:H25 str.
CVM9340]
gi|420345670|ref|ZP_14847099.1| tRNA modification GTPase TrmE [Shigella boydii 965-58]
gi|422778294|ref|ZP_16831944.1| tRNA modification GTPase TrmE [Escherichia coli H120]
gi|422801674|ref|ZP_16850170.1| tRNA modification GTPase TrmE [Escherichia coli M863]
gi|422807759|ref|ZP_16856188.1| tRNA modification GTPase TrmE [Escherichia fergusonii B253]
gi|422961856|ref|ZP_16972592.1| tRNA modification GTPase mnmE [Escherichia coli H494]
gi|427806907|ref|ZP_18973974.1| GTP-binding protein in thiophene and furan oxidation [Escherichia
coli chi7122]
gi|427811494|ref|ZP_18978559.1| GTP-binding protein in thiophene and furan oxidation [Escherichia
coli]
gi|432374329|ref|ZP_19617360.1| tRNA modification GTPase mnmE [Escherichia coli KTE11]
gi|432394389|ref|ZP_19637207.1| tRNA modification GTPase mnmE [Escherichia coli KTE21]
gi|432399666|ref|ZP_19642439.1| tRNA modification GTPase mnmE [Escherichia coli KTE25]
gi|432424123|ref|ZP_19666660.1| tRNA modification GTPase mnmE [Escherichia coli KTE178]
gi|432502274|ref|ZP_19744024.1| tRNA modification GTPase mnmE [Escherichia coli KTE216]
gi|432545557|ref|ZP_19782380.1| tRNA modification GTPase mnmE [Escherichia coli KTE236]
gi|432551036|ref|ZP_19787785.1| tRNA modification GTPase mnmE [Escherichia coli KTE237]
gi|432560985|ref|ZP_19797638.1| tRNA modification GTPase mnmE [Escherichia coli KTE49]
gi|432624093|ref|ZP_19860105.1| tRNA modification GTPase mnmE [Escherichia coli KTE76]
gi|432682364|ref|ZP_19917720.1| tRNA modification GTPase mnmE [Escherichia coli KTE143]
gi|432696584|ref|ZP_19931775.1| tRNA modification GTPase mnmE [Escherichia coli KTE162]
gi|432708114|ref|ZP_19943188.1| tRNA modification GTPase mnmE [Escherichia coli KTE6]
gi|432725184|ref|ZP_19960097.1| tRNA modification GTPase mnmE [Escherichia coli KTE17]
gi|432729792|ref|ZP_19964665.1| tRNA modification GTPase mnmE [Escherichia coli KTE18]
gi|432734474|ref|ZP_19969296.1| tRNA modification GTPase mnmE [Escherichia coli KTE45]
gi|432743481|ref|ZP_19978195.1| tRNA modification GTPase mnmE [Escherichia coli KTE23]
gi|432761559|ref|ZP_19996047.1| tRNA modification GTPase mnmE [Escherichia coli KTE46]
gi|432768094|ref|ZP_20002483.1| tRNA modification GTPase mnmE [Escherichia coli KTE50]
gi|432817512|ref|ZP_20051263.1| tRNA modification GTPase mnmE [Escherichia coli KTE115]
gi|432855729|ref|ZP_20083420.1| tRNA modification GTPase mnmE [Escherichia coli KTE144]
gi|432866477|ref|ZP_20088938.1| tRNA modification GTPase mnmE [Escherichia coli KTE146]
gi|432871476|ref|ZP_20091646.1| tRNA modification GTPase mnmE [Escherichia coli KTE147]
gi|432891276|ref|ZP_20104034.1| tRNA modification GTPase mnmE [Escherichia coli KTE165]
gi|432901278|ref|ZP_20111390.1| tRNA modification GTPase mnmE [Escherichia coli KTE192]
gi|432922973|ref|ZP_20125696.1| tRNA modification GTPase mnmE [Escherichia coli KTE173]
gi|432929582|ref|ZP_20130632.1| tRNA modification GTPase mnmE [Escherichia coli KTE175]
gi|432964494|ref|ZP_20153595.1| tRNA modification GTPase mnmE [Escherichia coli KTE202]
gi|432983226|ref|ZP_20171993.1| tRNA modification GTPase mnmE [Escherichia coli KTE211]
gi|432992865|ref|ZP_20181503.1| tRNA modification GTPase mnmE [Escherichia coli KTE217]
gi|433030662|ref|ZP_20218508.1| tRNA modification GTPase mnmE [Escherichia coli KTE109]
gi|433065187|ref|ZP_20252089.1| tRNA modification GTPase mnmE [Escherichia coli KTE125]
gi|433098548|ref|ZP_20284714.1| tRNA modification GTPase mnmE [Escherichia coli KTE139]
gi|433107977|ref|ZP_20293936.1| tRNA modification GTPase mnmE [Escherichia coli KTE148]
gi|433112993|ref|ZP_20298841.1| tRNA modification GTPase mnmE [Escherichia coli KTE150]
gi|443619785|ref|YP_007383641.1| tRNA modification GTPase TrmE [Escherichia coli APEC O78]
gi|450225594|ref|ZP_21897435.1| tRNA modification GTPase TrmE [Escherichia coli O08]
gi|205829138|sp|B1LL33.1|MNME_ECOSM RecName: Full=tRNA modification GTPase MnmE
gi|254811480|sp|B7N211.1|MNME_ECO81 RecName: Full=tRNA modification GTPase MnmE
gi|254811485|sp|B7LK49.1|MNME_ESCF3 RecName: Full=tRNA modification GTPase MnmE
gi|170124535|gb|EDS93466.1| tRNA modification GTPase TrmE [Escherichia albertii TW07627]
gi|170518826|gb|ACB17004.1| tRNA modification GTPase TrmE [Escherichia coli SMS-3-5]
gi|194420760|gb|EDX36836.1| tRNA modification GTPase TrmE [Shigella dysenteriae 1012]
gi|218358779|emb|CAQ91437.1| GTPase [Escherichia fergusonii ATCC 35469]
gi|218429559|emb|CAR10382.1| GTPase [Escherichia coli ED1a]
gi|222035421|emb|CAP78166.1| tRNA modification GTPase trmE [Escherichia coli LF82]
gi|281180761|dbj|BAI57091.1| GTP-binding protein [Escherichia coli SE15]
gi|284923790|emb|CBG36888.1| probable tRNA modification GTPase [Escherichia coli 042]
gi|300404923|gb|EFJ88461.1| tRNA modification GTPase TrmE [Escherichia coli MS 84-1]
gi|300523195|gb|EFK44264.1| tRNA modification GTPase TrmE [Escherichia coli MS 119-7]
gi|300838798|gb|EFK66558.1| tRNA modification GTPase TrmE [Escherichia coli MS 124-1]
gi|312948274|gb|ADR29101.1| tRNA modification GTPase TrmE [Escherichia coli O83:H1 str. NRG
857C]
gi|315254605|gb|EFU34573.1| tRNA modification GTPase TrmE [Escherichia coli MS 85-1]
gi|320193747|gb|EFW68380.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
WV_060327]
gi|323944179|gb|EGB40259.1| tRNA modification GTPase TrmE [Escherichia coli H120]
gi|323965768|gb|EGB61219.1| tRNA modification GTPase TrmE [Escherichia coli M863]
gi|324111604|gb|EGC05585.1| tRNA modification GTPase TrmE [Escherichia fergusonii B253]
gi|327250849|gb|EGE62551.1| tRNA modification GTPase TrmE [Escherichia coli STEC_7v]
gi|330908023|gb|EGH36542.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
AA86]
gi|331042032|gb|EGI14176.1| tRNA modification GTPase TrmE [Escherichia coli M605]
gi|331057867|gb|EGI29853.1| tRNA modification GTPase TrmE [Escherichia coli TA143]
gi|331072977|gb|EGI44302.1| tRNA modification GTPase TrmE [Escherichia coli H591]
gi|332083996|gb|EGI89203.1| tRNA modification GTPase TrmE [Shigella dysenteriae 155-74]
gi|332084896|gb|EGI90079.1| tRNA modification GTPase TrmE [Shigella boydii 5216-82]
gi|333971892|gb|AEG38697.1| GTPase/tRNA-U34 5-formylation enzyme TrmE [Escherichia coli NA114]
gi|349740344|gb|AEQ15050.1| GTPase [Escherichia coli O7:K1 str. CE10]
gi|371592598|gb|EHN81495.1| tRNA modification GTPase mnmE [Escherichia coli H494]
gi|380346382|gb|EIA34677.1| tRNA modification GTPase TrmE [Escherichia coli SCI-07]
gi|383476717|gb|EID68652.1| tRNA modification GTPase TrmE [Escherichia coli W26]
gi|386139293|gb|EIG80448.1| tRNA modification GTPase TrmE [Escherichia coli 1.2741]
gi|388333336|gb|EIK99972.1| tRNA modification GTPase TrmE [Escherichia coli O103:H25 str.
CVM9340]
gi|391275722|gb|EIQ34505.1| tRNA modification GTPase TrmE [Shigella boydii 965-58]
gi|412965089|emb|CCK49019.1| GTP-binding protein in thiophene and furan oxidation [Escherichia
coli chi7122]
gi|412971673|emb|CCJ46336.1| GTP-binding protein in thiophene and furan oxidation [Escherichia
coli]
gi|430893751|gb|ELC16075.1| tRNA modification GTPase mnmE [Escherichia coli KTE11]
gi|430912828|gb|ELC34000.1| tRNA modification GTPase mnmE [Escherichia coli KTE25]
gi|430914102|gb|ELC35210.1| tRNA modification GTPase mnmE [Escherichia coli KTE21]
gi|430941751|gb|ELC61893.1| tRNA modification GTPase mnmE [Escherichia coli KTE178]
gi|431025942|gb|ELD39028.1| tRNA modification GTPase mnmE [Escherichia coli KTE216]
gi|431070694|gb|ELD78993.1| tRNA modification GTPase mnmE [Escherichia coli KTE236]
gi|431076148|gb|ELD83658.1| tRNA modification GTPase mnmE [Escherichia coli KTE237]
gi|431088480|gb|ELD94358.1| tRNA modification GTPase mnmE [Escherichia coli KTE49]
gi|431155624|gb|ELE56370.1| tRNA modification GTPase mnmE [Escherichia coli KTE76]
gi|431217338|gb|ELF14917.1| tRNA modification GTPase mnmE [Escherichia coli KTE143]
gi|431231228|gb|ELF26996.1| tRNA modification GTPase mnmE [Escherichia coli KTE162]
gi|431254558|gb|ELF47826.1| tRNA modification GTPase mnmE [Escherichia coli KTE6]
gi|431262403|gb|ELF54393.1| tRNA modification GTPase mnmE [Escherichia coli KTE17]
gi|431270933|gb|ELF62076.1| tRNA modification GTPase mnmE [Escherichia coli KTE18]
gi|431271087|gb|ELF62229.1| tRNA modification GTPase mnmE [Escherichia coli KTE45]
gi|431281638|gb|ELF72541.1| tRNA modification GTPase mnmE [Escherichia coli KTE23]
gi|431305495|gb|ELF93818.1| tRNA modification GTPase mnmE [Escherichia coli KTE46]
gi|431321358|gb|ELG08959.1| tRNA modification GTPase mnmE [Escherichia coli KTE50]
gi|431360116|gb|ELG46729.1| tRNA modification GTPase mnmE [Escherichia coli KTE115]
gi|431397014|gb|ELG80475.1| tRNA modification GTPase mnmE [Escherichia coli KTE144]
gi|431401020|gb|ELG84374.1| tRNA modification GTPase mnmE [Escherichia coli KTE146]
gi|431407811|gb|ELG91016.1| tRNA modification GTPase mnmE [Escherichia coli KTE147]
gi|431422319|gb|ELH04512.1| tRNA modification GTPase mnmE [Escherichia coli KTE192]
gi|431430391|gb|ELH12223.1| tRNA modification GTPase mnmE [Escherichia coli KTE165]
gi|431434893|gb|ELH16507.1| tRNA modification GTPase mnmE [Escherichia coli KTE173]
gi|431440990|gb|ELH22318.1| tRNA modification GTPase mnmE [Escherichia coli KTE175]
gi|431467529|gb|ELH47537.1| tRNA modification GTPase mnmE [Escherichia coli KTE202]
gi|431488084|gb|ELH67721.1| tRNA modification GTPase mnmE [Escherichia coli KTE211]
gi|431490620|gb|ELH70230.1| tRNA modification GTPase mnmE [Escherichia coli KTE217]
gi|431540294|gb|ELI15921.1| tRNA modification GTPase mnmE [Escherichia coli KTE109]
gi|431577906|gb|ELI50524.1| tRNA modification GTPase mnmE [Escherichia coli KTE125]
gi|431612154|gb|ELI81405.1| tRNA modification GTPase mnmE [Escherichia coli KTE139]
gi|431623875|gb|ELI92501.1| tRNA modification GTPase mnmE [Escherichia coli KTE148]
gi|431624754|gb|ELI93351.1| tRNA modification GTPase mnmE [Escherichia coli KTE150]
gi|443424293|gb|AGC89197.1| tRNA modification GTPase TrmE [Escherichia coli APEC O78]
gi|449313778|gb|EMD03969.1| tRNA modification GTPase TrmE [Escherichia coli O08]
Length = 454
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|301324999|ref|ZP_07218552.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 78-1]
gi|300848114|gb|EFK75874.1| tRNA modification GTPase TrmE [Escherichia coli MS 78-1]
Length = 479
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 40 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 94
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 95 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 154
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 155 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 211
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 212 ---------GKIEAQL-------------------------------NDVIAD--LDAVR 229
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 230 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 274
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 275 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 306
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 73/141 (51%), Gaps = 11/141 (7%)
Query: 6 KKAAKEKAVIFFSRRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQ 65
++A K +A S R + ++ +TI A ++ G+ GV ++R+SG L A + +A
Sbjct: 9 RRADKHRASATQSNR-NIMSDNDTIVAQATPPGRGGVGILRISG---LKA-REVAETVLG 63
Query: 66 KVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSM 120
K+PKPRYA D VLD+G+ LWFP + G V+ + GP L+ LK +
Sbjct: 64 KLPKPRYADYLPFKD-ADGSVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRI 122
Query: 121 ACYPDQKVSKPRYASLRNIVD 141
P ++++P S R ++
Sbjct: 123 LTIPGLRIARPGEFSERAFLN 143
>gi|156936085|ref|YP_001440001.1| tRNA modification GTPase TrmE [Cronobacter sakazakii ATCC BAA-894]
gi|166200478|sp|A7MN03.1|MNME_ENTS8 RecName: Full=tRNA modification GTPase MnmE
gi|156534339|gb|ABU79165.1| hypothetical protein ESA_03979 [Cronobacter sakazakii ATCC BAA-894]
Length = 454
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG N +++ K+ K RYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRVSGQQARNVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NEVIGD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++RVSG N +++ K+PK RYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRVSGQQARNVAQAVLG----KLPKARYADYLPFKD-ADGTAL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118
>gi|215489046|ref|YP_002331477.1| tRNA modification GTPase TrmE [Escherichia coli O127:H6 str.
E2348/69]
gi|312967884|ref|ZP_07782096.1| tRNA modification GTPase TrmE [Escherichia coli 2362-75]
gi|417758141|ref|ZP_12406202.1| tRNA modification GTPase TrmE [Escherichia coli DEC2B]
gi|418999163|ref|ZP_13546740.1| tRNA modification GTPase TrmE [Escherichia coli DEC1A]
gi|419004522|ref|ZP_13552030.1| tRNA modification GTPase TrmE [Escherichia coli DEC1B]
gi|419010204|ref|ZP_13557612.1| tRNA modification GTPase TrmE [Escherichia coli DEC1C]
gi|419015905|ref|ZP_13563239.1| tRNA modification GTPase TrmE [Escherichia coli DEC1D]
gi|419020830|ref|ZP_13568127.1| tRNA modification GTPase TrmE [Escherichia coli DEC1E]
gi|419026283|ref|ZP_13573496.1| tRNA modification GTPase TrmE [Escherichia coli DEC2A]
gi|419031429|ref|ZP_13578569.1| tRNA modification GTPase TrmE [Escherichia coli DEC2C]
gi|419037059|ref|ZP_13584130.1| tRNA modification GTPase TrmE [Escherichia coli DEC2D]
gi|419042131|ref|ZP_13589146.1| tRNA modification GTPase TrmE [Escherichia coli DEC2E]
gi|254811475|sp|B7UMH3.1|MNME_ECO27 RecName: Full=tRNA modification GTPase MnmE
gi|215267118|emb|CAS11565.1| GTPase [Escherichia coli O127:H6 str. E2348/69]
gi|312287445|gb|EFR15353.1| tRNA modification GTPase TrmE [Escherichia coli 2362-75]
gi|377839142|gb|EHU04241.1| tRNA modification GTPase TrmE [Escherichia coli DEC1C]
gi|377839211|gb|EHU04309.1| tRNA modification GTPase TrmE [Escherichia coli DEC1A]
gi|377841930|gb|EHU06986.1| tRNA modification GTPase TrmE [Escherichia coli DEC1B]
gi|377853024|gb|EHU17931.1| tRNA modification GTPase TrmE [Escherichia coli DEC1D]
gi|377856791|gb|EHU21650.1| tRNA modification GTPase TrmE [Escherichia coli DEC1E]
gi|377858349|gb|EHU23189.1| tRNA modification GTPase TrmE [Escherichia coli DEC2A]
gi|377870449|gb|EHU35133.1| tRNA modification GTPase TrmE [Escherichia coli DEC2B]
gi|377872280|gb|EHU36927.1| tRNA modification GTPase TrmE [Escherichia coli DEC2C]
gi|377874730|gb|EHU39356.1| tRNA modification GTPase TrmE [Escherichia coli DEC2D]
gi|377886143|gb|EHU50628.1| tRNA modification GTPase TrmE [Escherichia coli DEC2E]
Length = 454
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|114322028|ref|YP_743711.1| tRNA modification GTPase TrmE [Alkalilimnicola ehrlichii MLHE-1]
gi|122310594|sp|Q0A4L6.1|MNME_ALHEH RecName: Full=tRNA modification GTPase MnmE
gi|114228422|gb|ABI58221.1| tRNA modification GTPase trmE [Alkalilimnicola ehrlichii MLHE-1]
Length = 444
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 125/347 (36%), Positives = 169/347 (48%), Gaps = 71/347 (20%)
Query: 91 LCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDE 150
+C G+ GV+VIRVSGP A+ ++A ++ +PR A L D + LDE
Sbjct: 6 ICALATPPGRGGVAVIRVSGP----AVPAIARALAGRLPEPRRAVLARFCDAGGDT-LDE 60
Query: 151 GLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKL 210
GL L+FP P SFTGED E Q HG V++ +L L L G PA PGEFS+RAF N ++
Sbjct: 61 GLMLYFPAPRSFTGEDVLELQGHGGEVVVDRLLRRLHAL-GAHPARPGEFSERAFLNGRM 119
Query: 211 DLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEI 270
DLTQ EA+ DLI A++E Q AL ++G E + VEA IDFS++EI
Sbjct: 120 DLTQAEAIADLIAADSEASAQAALRSLEGAFGDAVRELVARVTRLRVQVEAAIDFSDEEI 179
Query: 271 IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIE 330
DF DE +
Sbjct: 180 ---------------------------------------------------DFLADEAVA 188
Query: 331 DNILNTVRSQVVQLHGSIEKHIELSNKCGVR--IRSGIKSVIVGEPNVGKSSLMNFLCQK 388
Q+ I++ L +K G +R G++ V+ G PN GKSSL+N L +
Sbjct: 189 G-----------QIGALIDQLQALRDKAGQGRVLRDGMQVVLAGPPNAGKSSLLNALTED 237
Query: 389 QISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
+IVT +PGTTRD++ +HL I G P+ ++DTAGLR D IE EG
Sbjct: 238 DSAIVTEVPGTTRDLLREHLHIDGMPLHVIDTAGLR-DDPDRIEAEG 283
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
+ TI AL++ G+ GV+VIRVSGP A+ ++A ++P+PR A L D
Sbjct: 3 RTTICALATPPGRGGVAVIRVSGP----AVPAIARALAGRLPEPRRAVLARFCD-AGGDT 57
Query: 87 LDEGLCLWFP 96
LDEGL L+FP
Sbjct: 58 LDEGLMLYFP 67
>gi|74314021|ref|YP_312440.1| tRNA modification GTPase TrmE [Shigella sonnei Ss046]
gi|414578400|ref|ZP_11435567.1| tRNA modification GTPase TrmE [Shigella sonnei 3233-85]
gi|415810950|ref|ZP_11503300.1| tRNA modification GTPase TrmE [Escherichia coli LT-68]
gi|417125691|ref|ZP_11973652.1| tRNA modification GTPase TrmE [Escherichia coli 97.0246]
gi|418269181|ref|ZP_12887715.1| tRNA modification GTPase TrmE [Shigella sonnei str. Moseley]
gi|420360870|ref|ZP_14861820.1| tRNA modification GTPase TrmE [Shigella sonnei 3226-85]
gi|420365469|ref|ZP_14866333.1| tRNA modification GTPase TrmE [Shigella sonnei 4822-66]
gi|123615900|sp|Q3YWA7.1|MNME_SHISS RecName: Full=tRNA modification GTPase MnmE
gi|73857498|gb|AAZ90205.1| GTP-binding protein in thiophene and furan oxidation [Shigella
sonnei Ss046]
gi|323173325|gb|EFZ58954.1| tRNA modification GTPase TrmE [Escherichia coli LT-68]
gi|386145690|gb|EIG92147.1| tRNA modification GTPase TrmE [Escherichia coli 97.0246]
gi|391278260|gb|EIQ36976.1| tRNA modification GTPase TrmE [Shigella sonnei 3226-85]
gi|391281381|gb|EIQ40031.1| tRNA modification GTPase TrmE [Shigella sonnei 3233-85]
gi|391292008|gb|EIQ50363.1| tRNA modification GTPase TrmE [Shigella sonnei 4822-66]
gi|397896042|gb|EJL12466.1| tRNA modification GTPase TrmE [Shigella sonnei str. Moseley]
Length = 454
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|424818491|ref|ZP_18243642.1| tRNA modification GTPase TrmE [Escherichia fergusonii ECD227]
gi|325499511|gb|EGC97370.1| tRNA modification GTPase TrmE [Escherichia fergusonii ECD227]
Length = 454
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D V LD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKDADGRV-LDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D +V L
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKDADGRV-L 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|261341633|ref|ZP_05969491.1| hypothetical protein ENTCAN_08099 [Enterobacter cancerogenus ATCC
35316]
gi|288315988|gb|EFC54926.1| tRNA modification GTPase TrmE [Enterobacter cancerogenus ATCC
35316]
Length = 454
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 173/332 (52%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKDS-DGTPLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+++D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NEVMKD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 281
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKDS-DGTPL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P +++KP S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLN 118
>gi|424801823|ref|ZP_18227365.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
sakazakii 696]
gi|423237544|emb|CCK09235.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
sakazakii 696]
Length = 454
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + +++ K+ K RYA D + LD+G+ LWFP
Sbjct: 15 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ANGTALDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NEVIGD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++RVSG + +++ K+PK RYA D + L
Sbjct: 5 DTIVAQATPPGRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ANGTAL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 118
>gi|422831157|ref|ZP_16879306.1| tRNA modification GTPase mnmE [Escherichia coli B093]
gi|371602570|gb|EHN91263.1| tRNA modification GTPase mnmE [Escherichia coli B093]
Length = 454
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQTARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 10/167 (5%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVDP 142
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLND 119
Query: 143 VSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL 189
++ E + + T A +N ++ ALT L
Sbjct: 120 KLDLAQAEAIADLIDASSEQTARSALNSLQGAFSARVNHLVEALTHL 166
>gi|344303358|gb|EGW33632.1| hypothetical protein SPAPADRAFT_71440 [Spathaspora passalidarum
NRRL Y-27907]
Length = 492
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/348 (33%), Positives = 176/348 (50%), Gaps = 71/348 (20%)
Query: 97 RHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWF 156
+ GK ++V+RVSGP + + P K + ASLR + + +LDE L L+
Sbjct: 29 KFGKSAIAVVRVSGPQSAYIYNKLTHSPHP--PKNKTASLRRLYSS-DKALLDEALTLYL 85
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG------LRPAEPGEFSKRAFFNNKL 210
P P ++TG+D E +HG IA+I ++L A+ +L +R AE GEFSK+ F N +
Sbjct: 86 PSPRTYTGQDILELHLHGGIAIIRSVLDAIKQLHDPHNGIYIRQAERGEFSKQGFLNGRF 145
Query: 211 DLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEI 270
DLT+ E + D+I AETE QR L + G K +++WR+ IL+++A + IDF ED
Sbjct: 146 DLTELEGISDMIDAETESQRVATLASITGKTKNEFAKWREDILKNIAMLTTLIDFGEDHD 205
Query: 271 IEDN--ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI 328
IE+ + + V + ++Q+ I ++
Sbjct: 206 IEETNQLFDDVEADIIQVEQEINEY----------------------------------- 230
Query: 329 IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQK 388
LN VRS + L GI+ ++G PN GKSS++N L K
Sbjct: 231 -----LNKVRSSSILLR-------------------GIQLALLGPPNAGKSSILNILANK 266
Query: 389 QISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT-TTSDIIETEG 435
+ +IV+ I GTTRDV++ L+IGGY V+L DTAG+R +D IE EG
Sbjct: 267 EAAIVSEIAGTTRDVLDIPLEIGGYKVVLGDTAGIRALNAADKIEQEG 314
>gi|290477349|ref|YP_003470270.1| GTPase involved in tRNA modification and in thiophene and furan
oxidation [Xenorhabdus bovienii SS-2004]
gi|289176703|emb|CBJ83512.1| GTPase involved in tRNA modification and in thiophene and furan
oxidation [Xenorhabdus bovienii SS-2004]
Length = 454
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 168/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SGP + + K+ KPRYA D V VLD+G+ L+FP
Sbjct: 15 GRGGVGILRISGPKAAEVAEVVLG----KLPKPRYADYLPFRD-VDGTVLDQGIALYFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + + +R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTISAVRIANPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + A++ ++G + + + VEA IDF ++EI
Sbjct: 130 ADLIDASSEQAARSAMNSLQGTFSHQVHQMVEALTNLRIYVEAAIDFPDEEI-------- 181
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+ +EA +D E+IE+ L+ VR
Sbjct: 182 -------------------------------DFLSDGKIEARLD----EVIEE--LDHVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
SQ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 SQARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SGP + + K+PKPRYA D V VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGPKAAEVAEVVLG----KLPKPRYADYLPFRD-VDGTVL 59
Query: 88 DEGLCLWFP 96
D+G+ L+FP
Sbjct: 60 DQGIALYFP 68
>gi|333985787|ref|YP_004514997.1| tRNA modification GTPase mnmE [Methylomonas methanica MC09]
gi|333809828|gb|AEG02498.1| tRNA modification GTPase mnmE [Methylomonas methanica MC09]
Length = 446
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 125/340 (36%), Positives = 179/340 (52%), Gaps = 73/340 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G GV +IR+SGP L+ + + +K KPRYA D + ++D GL L+FP
Sbjct: 16 GNGGVGIIRISGPAALDICRHIT----RKTPKPRYALFSRFYD-ADDSIIDSGLALYFPG 70
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E Q HG V++ +L + L G RPA PGEFS+RAF NNK+DLTQ EA+
Sbjct: 71 PASFTGEDTLELQGHGGSVVLDMLLRRVLSL-GTRPANPGEFSQRAFLNNKIDLTQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEW-RQLILESLASVEAYIDFSEDEIIEDNILN 277
DLI + TE + A H M+G ++SE +LI DE+IE
Sbjct: 130 ADLITSGTEQAVRSAQHSMQG----VFSEQINELI---------------DELIE----- 165
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI--IEDNILN 335
+R+ +EA IDF ++EI + D +
Sbjct: 166 ------------------------LRVY-----------IEAAIDFVDEEIDFLSDGM-- 188
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
V +++ QLHG ++K I + + G + GI V+ G+PN GKSSL+N L + +IVT
Sbjct: 189 -VANKIEQLHGKLQK-IHATAQQGRLLHDGISVVLAGKPNAGKSSLLNALAGHEAAIVTD 246
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I GTTRDV+ + + I G P+ ++DTAGL + +++E EG
Sbjct: 247 IAGTTRDVLRERIQIDGMPLHIIDTAGLH-DSDNVVEQEG 285
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
++ +TI A+++ G GV +IR+SGP L+ + + +K PKPRYA D
Sbjct: 2 VSTSDTIAAIATPPGNGGVGIIRISGPAALDICRHIT----RKTPKPRYALFSRFYD-AD 56
Query: 84 KVVLDEGLCLWFP 96
++D GL L+FP
Sbjct: 57 DSIIDSGLALYFP 69
>gi|422783688|ref|ZP_16836471.1| tRNA modification GTPase TrmE [Escherichia coli TW10509]
gi|323975226|gb|EGB70330.1| tRNA modification GTPase TrmE [Escherichia coli TW10509]
Length = 454
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|432367192|ref|ZP_19610306.1| tRNA modification GTPase mnmE [Escherichia coli KTE10]
gi|430891007|gb|ELC13555.1| tRNA modification GTPase mnmE [Escherichia coli KTE10]
Length = 454
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISGVKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGVKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|420338515|ref|ZP_14840069.1| tRNA modification GTPase TrmE [Shigella flexneri K-315]
gi|391257830|gb|EIQ16938.1| tRNA modification GTPase TrmE [Shigella flexneri K-315]
Length = 454
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 171/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISGFKSREVAETVLG----KLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG + +++ K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGFKSREVAETVLG----KLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|294638333|ref|ZP_06716586.1| tRNA modification GTPase TrmE [Edwardsiella tarda ATCC 23685]
gi|451966292|ref|ZP_21919546.1| tRNA modification GTPase MnmE [Edwardsiella tarda NBRC 105688]
gi|291088586|gb|EFE21147.1| tRNA modification GTPase TrmE [Edwardsiella tarda ATCC 23685]
gi|451315071|dbj|GAC64908.1| tRNA modification GTPase MnmE [Edwardsiella tarda NBRC 105688]
Length = 455
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 118/336 (35%), Positives = 170/336 (50%), Gaps = 73/336 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSGP +++ K+ KPRYA D +LD+G+ L+FP
Sbjct: 16 GRGGVGILRVSGPQAQAVAQALLG----KLPKPRYADYLPFRDQ-DGTLLDQGIALYFPG 70
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +LPGLR A PGEFS+RAF N+K+DL Q EA+
Sbjct: 71 PNSFTGEDVLELQGHGGPVILDLLLKRILQLPGLRIARPGEFSERAFLNDKMDLAQAEAI 130
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLAS----VEAYIDFSEDEIIEDN 274
DLI A +E + A++ ++G ++S ++ESL VEA IDF ++EI
Sbjct: 131 ADLIDASSEQAARSAVNSLQG----VFSARVNQLVESLTHLRIYVEAAIDFPDEEI---- 182
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
DF D IE L
Sbjct: 183 -----------------------------------------------DFLSDGKIEAQ-L 194
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
N V ++ + + G +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 195 NAVMHELAD--------VRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVT 246
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 247 DIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 282
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++RVSGP +++ K+PKPRYA D +L
Sbjct: 6 DTIVAQATAPGRGGVGILRVSGPQAQAVAQALLG----KLPKPRYADYLPFRDQ-DGTLL 60
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ L+FP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 61 DQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILQLPGLRIARPGEFSERAFLN 119
>gi|319404912|emb|CBI78513.1| tRNA modification GTPase [Bartonella rochalimae ATCC BAA-1498]
Length = 435
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 119/330 (36%), Positives = 168/330 (50%), Gaps = 66/330 (20%)
Query: 102 GVSVIRVSGPDTLNALKSM-ACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+++R+SGP +K++ C P ++ + R+ LD L ++FP P+
Sbjct: 15 GVAIVRLSGPRVKYIVKTLCGCLPKARLMHYGNLTARD------GSFLDSALTVFFPAPH 68
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDC EF +HGS AV+N L LT R AE GEFS+RAF KLDL Q E+L D
Sbjct: 69 SFTGEDCAEFHLHGSKAVVNRFLDELTTFEECRLAEAGEFSRRAFIEGKLDLIQAESLAD 128
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LIQAETE QR+ A+ G L +LY +WR +IL T R
Sbjct: 129 LIQAETESQRRLAVMGTSGTLTKLYRDWR------------------------HILITAR 164
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
A +EA +DFS++ I +++ + V
Sbjct: 165 ----------------------------------ALIEAELDFSDENDIPNSVSDKVWKD 190
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
+ +L+ S+ +HI + + +R GIK VIVG PN GKSS++N L + ++IV+ GTT
Sbjct: 191 IKKLYHSLCEHISAGERASI-LRDGIKIVIVGAPNSGKSSILNRLSGRSVAIVSEEEGTT 249
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
RD +E L + G V+ DTAGLR T + I
Sbjct: 250 RDALEVRLVLSGLLVLFTDTAGLRKTENTI 279
>gi|383180729|ref|YP_005458734.1| tRNA modification GTPase TrmE [Shigella sonnei 53G]
gi|415851543|ref|ZP_11528206.1| tRNA modification GTPase TrmE [Shigella sonnei 53G]
gi|323164682|gb|EFZ50477.1| tRNA modification GTPase TrmE [Shigella sonnei 53G]
Length = 454
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGGVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGGVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|300940893|ref|ZP_07155419.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 21-1]
gi|300454323|gb|EFK17816.1| tRNA modification GTPase TrmE [Escherichia coli MS 21-1]
Length = 478
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 39 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 93
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 94 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 153
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 154 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 210
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 211 ---------GKIEAQL-------------------------------NDVIAD--LDAVR 228
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 229 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 273
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 274 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 305
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 29 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVL 83
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 84 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 142
>gi|319407872|emb|CBI81525.1| tRNA modification GTPase [Bartonella sp. 1-1C]
Length = 435
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 119/330 (36%), Positives = 168/330 (50%), Gaps = 66/330 (20%)
Query: 102 GVSVIRVSGPDTLNALKSM-ACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+++R+SGP +K++ C P ++ + R+ LD L ++FP P+
Sbjct: 15 GVAIVRLSGPRVKYIVKTLCGCLPKARLMHYGNLTARD------GSFLDSALTVFFPAPH 68
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDC EF +HGS AV+N L LT R AE GEFS+RAF KLDL Q E+L D
Sbjct: 69 SFTGEDCAEFHLHGSRAVVNRFLDELTTFEECRLAEAGEFSRRAFIEGKLDLIQAESLAD 128
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LIQAETE QR+ A+ G L +LY +WR +IL T R
Sbjct: 129 LIQAETESQRRLAVMGTSGTLTKLYRDWR------------------------HILITAR 164
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
A +EA +DFS++ I +++ + V
Sbjct: 165 ----------------------------------ALIEAELDFSDENDIPNSVSDKVWKD 190
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
+ +L+ S+ +HI + + +R GIK VIVG PN GKSS++N L + ++IV+ GTT
Sbjct: 191 IKKLYHSLCEHISAGERASI-LRDGIKIVIVGAPNSGKSSILNRLSGRSVAIVSEEEGTT 249
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
RD +E L + G V+ DTAGLR T + I
Sbjct: 250 RDALEVRLVLSGLLVLFTDTAGLRKTENTI 279
>gi|15833895|ref|NP_312668.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. Sakai]
gi|168748574|ref|ZP_02773596.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4113]
gi|168753599|ref|ZP_02778606.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4401]
gi|168759896|ref|ZP_02784903.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4501]
gi|168766197|ref|ZP_02791204.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4486]
gi|168772255|ref|ZP_02797262.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4196]
gi|168779932|ref|ZP_02804939.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4076]
gi|168786540|ref|ZP_02811547.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC869]
gi|168798745|ref|ZP_02823752.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC508]
gi|195936329|ref|ZP_03081711.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4024]
gi|208808040|ref|ZP_03250377.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4206]
gi|208814185|ref|ZP_03255514.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4045]
gi|208820072|ref|ZP_03260392.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4042]
gi|209395938|ref|YP_002273234.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4115]
gi|217324903|ref|ZP_03440987.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
TW14588]
gi|254795709|ref|YP_003080546.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
TW14359]
gi|261225860|ref|ZP_05940141.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Escherichia
coli O157:H7 str. FRIK2000]
gi|261258905|ref|ZP_05951438.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Escherichia
coli O157:H7 str. FRIK966]
gi|291285125|ref|YP_003501943.1| tRNA modification GTPase trmE [Escherichia coli O55:H7 str. CB9615]
gi|387509166|ref|YP_006161422.1| tRNA modification GTPase TrmE [Escherichia coli O55:H7 str.
RM12579]
gi|387884937|ref|YP_006315239.1| tRNA modification GTPase TrmE [Escherichia coli Xuzhou21]
gi|416315584|ref|ZP_11659397.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
O157:H7 str. 1044]
gi|416319838|ref|ZP_11662390.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
O157:H7 str. EC1212]
gi|416328599|ref|ZP_11668268.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
O157:H7 str. 1125]
gi|416778596|ref|ZP_11875993.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. G5101]
gi|416789859|ref|ZP_11880836.1| tRNA modification GTPase TrmE [Escherichia coli O157:H- str.
493-89]
gi|416801743|ref|ZP_11885775.1| tRNA modification GTPase TrmE [Escherichia coli O157:H- str. H
2687]
gi|416812596|ref|ZP_11890695.1| tRNA modification GTPase TrmE [Escherichia coli O55:H7 str.
3256-97]
gi|416823020|ref|ZP_11895317.1| tRNA modification GTPase TrmE [Escherichia coli O55:H7 str. USDA
5905]
gi|416833369|ref|ZP_11900307.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
LSU-61]
gi|419047885|ref|ZP_13594814.1| tRNA modification GTPase TrmE [Escherichia coli DEC3A]
gi|419053582|ref|ZP_13600448.1| tRNA modification GTPase TrmE [Escherichia coli DEC3B]
gi|419059541|ref|ZP_13606341.1| tRNA modification GTPase TrmE [Escherichia coli DEC3C]
gi|419065091|ref|ZP_13611801.1| tRNA modification GTPase TrmE [Escherichia coli DEC3D]
gi|419072046|ref|ZP_13617646.1| tRNA modification GTPase TrmE [Escherichia coli DEC3E]
gi|419077881|ref|ZP_13623379.1| tRNA modification GTPase TrmE [Escherichia coli DEC3F]
gi|419083025|ref|ZP_13628467.1| tRNA modification GTPase TrmE [Escherichia coli DEC4A]
gi|419088894|ref|ZP_13634245.1| tRNA modification GTPase TrmE [Escherichia coli DEC4B]
gi|419094832|ref|ZP_13640107.1| tRNA modification GTPase TrmE [Escherichia coli DEC4C]
gi|419100658|ref|ZP_13645844.1| tRNA modification GTPase TrmE [Escherichia coli DEC4D]
gi|419106425|ref|ZP_13651546.1| tRNA modification GTPase TrmE [Escherichia coli DEC4E]
gi|419111808|ref|ZP_13656859.1| tRNA modification GTPase TrmE [Escherichia coli DEC4F]
gi|419117272|ref|ZP_13662280.1| tRNA modification GTPase TrmE [Escherichia coli DEC5A]
gi|419123086|ref|ZP_13668025.1| tRNA modification GTPase TrmE [Escherichia coli DEC5B]
gi|419128389|ref|ZP_13673259.1| tRNA modification GTPase TrmE [Escherichia coli DEC5C]
gi|419133928|ref|ZP_13678752.1| tRNA modification GTPase TrmE [Escherichia coli DEC5D]
gi|419139071|ref|ZP_13683861.1| tRNA modification GTPase TrmE [Escherichia coli DEC5E]
gi|420272137|ref|ZP_14774485.1| tRNA modification GTPase TrmE [Escherichia coli PA22]
gi|420277839|ref|ZP_14780118.1| tRNA modification GTPase TrmE [Escherichia coli PA40]
gi|420283085|ref|ZP_14785317.1| tRNA modification GTPase TrmE [Escherichia coli TW06591]
gi|420289304|ref|ZP_14791485.1| tRNA modification GTPase TrmE [Escherichia coli TW10246]
gi|420294980|ref|ZP_14797087.1| tRNA modification GTPase TrmE [Escherichia coli TW11039]
gi|420300810|ref|ZP_14802853.1| tRNA modification GTPase TrmE [Escherichia coli TW09109]
gi|420306687|ref|ZP_14808673.1| tRNA modification GTPase TrmE [Escherichia coli TW10119]
gi|420312061|ref|ZP_14813987.1| tRNA modification GTPase TrmE [Escherichia coli EC1738]
gi|420317798|ref|ZP_14819667.1| tRNA modification GTPase TrmE [Escherichia coli EC1734]
gi|421820504|ref|ZP_16255988.1| tRNA modification GTPase TrmE [Escherichia coli 10.0821]
gi|421827312|ref|ZP_16262658.1| tRNA modification GTPase TrmE [Escherichia coli FRIK920]
gi|421833339|ref|ZP_16268617.1| tRNA modification GTPase TrmE [Escherichia coli PA7]
gi|423727871|ref|ZP_17701692.1| tRNA modification GTPase TrmE [Escherichia coli PA31]
gi|424080029|ref|ZP_17816976.1| tRNA modification GTPase TrmE [Escherichia coli FDA505]
gi|424086429|ref|ZP_17822905.1| tRNA modification GTPase TrmE [Escherichia coli FDA517]
gi|424092844|ref|ZP_17828756.1| tRNA modification GTPase TrmE [Escherichia coli FRIK1996]
gi|424099524|ref|ZP_17834772.1| tRNA modification GTPase TrmE [Escherichia coli FRIK1985]
gi|424105721|ref|ZP_17840443.1| tRNA modification GTPase TrmE [Escherichia coli FRIK1990]
gi|424112362|ref|ZP_17846578.1| tRNA modification GTPase TrmE [Escherichia coli 93-001]
gi|424118300|ref|ZP_17852123.1| tRNA modification GTPase TrmE [Escherichia coli PA3]
gi|424124496|ref|ZP_17857784.1| tRNA modification GTPase TrmE [Escherichia coli PA5]
gi|424130659|ref|ZP_17863551.1| tRNA modification GTPase TrmE [Escherichia coli PA9]
gi|424136973|ref|ZP_17869400.1| tRNA modification GTPase TrmE [Escherichia coli PA10]
gi|424143527|ref|ZP_17875371.1| tRNA modification GTPase TrmE [Escherichia coli PA14]
gi|424149909|ref|ZP_17881270.1| tRNA modification GTPase TrmE [Escherichia coli PA15]
gi|424163622|ref|ZP_17886683.1| tRNA modification GTPase TrmE [Escherichia coli PA24]
gi|424256729|ref|ZP_17892229.1| tRNA modification GTPase TrmE [Escherichia coli PA25]
gi|424335702|ref|ZP_17898163.1| tRNA modification GTPase TrmE [Escherichia coli PA28]
gi|424452219|ref|ZP_17903860.1| tRNA modification GTPase TrmE [Escherichia coli PA32]
gi|424458395|ref|ZP_17909484.1| tRNA modification GTPase TrmE [Escherichia coli PA33]
gi|424464927|ref|ZP_17915244.1| tRNA modification GTPase TrmE [Escherichia coli PA39]
gi|424471155|ref|ZP_17920946.1| tRNA modification GTPase TrmE [Escherichia coli PA41]
gi|424477660|ref|ZP_17926961.1| tRNA modification GTPase TrmE [Escherichia coli PA42]
gi|424483440|ref|ZP_17932407.1| tRNA modification GTPase TrmE [Escherichia coli TW07945]
gi|424489629|ref|ZP_17938157.1| tRNA modification GTPase TrmE [Escherichia coli TW09098]
gi|424496325|ref|ZP_17943855.1| tRNA modification GTPase TrmE [Escherichia coli TW09195]
gi|424502948|ref|ZP_17949822.1| tRNA modification GTPase TrmE [Escherichia coli EC4203]
gi|424509219|ref|ZP_17955578.1| tRNA modification GTPase TrmE [Escherichia coli EC4196]
gi|424516617|ref|ZP_17961197.1| tRNA modification GTPase TrmE [Escherichia coli TW14313]
gi|424522754|ref|ZP_17966849.1| tRNA modification GTPase TrmE [Escherichia coli TW14301]
gi|424528628|ref|ZP_17972328.1| tRNA modification GTPase TrmE [Escherichia coli EC4421]
gi|424534774|ref|ZP_17978108.1| tRNA modification GTPase TrmE [Escherichia coli EC4422]
gi|424540831|ref|ZP_17983760.1| tRNA modification GTPase TrmE [Escherichia coli EC4013]
gi|424547000|ref|ZP_17989327.1| tRNA modification GTPase TrmE [Escherichia coli EC4402]
gi|424553202|ref|ZP_17995019.1| tRNA modification GTPase TrmE [Escherichia coli EC4439]
gi|424559401|ref|ZP_18000786.1| tRNA modification GTPase TrmE [Escherichia coli EC4436]
gi|424565727|ref|ZP_18006717.1| tRNA modification GTPase TrmE [Escherichia coli EC4437]
gi|424571849|ref|ZP_18012375.1| tRNA modification GTPase TrmE [Escherichia coli EC4448]
gi|424578008|ref|ZP_18018033.1| tRNA modification GTPase TrmE [Escherichia coli EC1845]
gi|424583840|ref|ZP_18023472.1| tRNA modification GTPase TrmE [Escherichia coli EC1863]
gi|425100479|ref|ZP_18503200.1| tRNA modification GTPase TrmE [Escherichia coli 3.4870]
gi|425106586|ref|ZP_18508888.1| tRNA modification GTPase TrmE [Escherichia coli 5.2239]
gi|425112589|ref|ZP_18514496.1| tRNA modification GTPase TrmE [Escherichia coli 6.0172]
gi|425128517|ref|ZP_18529672.1| tRNA modification GTPase TrmE [Escherichia coli 8.0586]
gi|425134287|ref|ZP_18535124.1| tRNA modification GTPase TrmE [Escherichia coli 8.2524]
gi|425140882|ref|ZP_18541249.1| tRNA modification GTPase TrmE [Escherichia coli 10.0833]
gi|425146552|ref|ZP_18546530.1| tRNA modification GTPase TrmE [Escherichia coli 10.0869]
gi|425152668|ref|ZP_18552269.1| tRNA modification GTPase TrmE [Escherichia coli 88.0221]
gi|425158568|ref|ZP_18557817.1| tRNA modification GTPase TrmE [Escherichia coli PA34]
gi|425164885|ref|ZP_18563759.1| tRNA modification GTPase TrmE [Escherichia coli FDA506]
gi|425170634|ref|ZP_18569094.1| tRNA modification GTPase TrmE [Escherichia coli FDA507]
gi|425176679|ref|ZP_18574785.1| tRNA modification GTPase TrmE [Escherichia coli FDA504]
gi|425182741|ref|ZP_18580423.1| tRNA modification GTPase TrmE [Escherichia coli FRIK1999]
gi|425195769|ref|ZP_18592525.1| tRNA modification GTPase TrmE [Escherichia coli NE1487]
gi|425202241|ref|ZP_18598437.1| tRNA modification GTPase TrmE [Escherichia coli NE037]
gi|425208622|ref|ZP_18604406.1| tRNA modification GTPase TrmE [Escherichia coli FRIK2001]
gi|425214379|ref|ZP_18609768.1| tRNA modification GTPase TrmE [Escherichia coli PA4]
gi|425220507|ref|ZP_18615456.1| tRNA modification GTPase TrmE [Escherichia coli PA23]
gi|425227149|ref|ZP_18621603.1| tRNA modification GTPase TrmE [Escherichia coli PA49]
gi|425233309|ref|ZP_18627335.1| tRNA modification GTPase TrmE [Escherichia coli PA45]
gi|425239231|ref|ZP_18632938.1| tRNA modification GTPase TrmE [Escherichia coli TT12B]
gi|425245465|ref|ZP_18638759.1| tRNA modification GTPase TrmE [Escherichia coli MA6]
gi|425251658|ref|ZP_18644588.1| tRNA modification GTPase TrmE [Escherichia coli 5905]
gi|425257450|ref|ZP_18649938.1| tRNA modification GTPase TrmE [Escherichia coli CB7326]
gi|425263715|ref|ZP_18655694.1| tRNA modification GTPase TrmE [Escherichia coli EC96038]
gi|425269704|ref|ZP_18661318.1| tRNA modification GTPase TrmE [Escherichia coli 5412]
gi|425297173|ref|ZP_18687296.1| tRNA modification GTPase TrmE [Escherichia coli PA38]
gi|425313870|ref|ZP_18703028.1| tRNA modification GTPase TrmE [Escherichia coli EC1735]
gi|425319852|ref|ZP_18708620.1| tRNA modification GTPase TrmE [Escherichia coli EC1736]
gi|425325979|ref|ZP_18714302.1| tRNA modification GTPase TrmE [Escherichia coli EC1737]
gi|425332297|ref|ZP_18720107.1| tRNA modification GTPase TrmE [Escherichia coli EC1846]
gi|425338478|ref|ZP_18725809.1| tRNA modification GTPase TrmE [Escherichia coli EC1847]
gi|425344780|ref|ZP_18731656.1| tRNA modification GTPase TrmE [Escherichia coli EC1848]
gi|425350618|ref|ZP_18737066.1| tRNA modification GTPase TrmE [Escherichia coli EC1849]
gi|425356891|ref|ZP_18742940.1| tRNA modification GTPase TrmE [Escherichia coli EC1850]
gi|425362845|ref|ZP_18748478.1| tRNA modification GTPase TrmE [Escherichia coli EC1856]
gi|425369102|ref|ZP_18754175.1| tRNA modification GTPase TrmE [Escherichia coli EC1862]
gi|425375410|ref|ZP_18760035.1| tRNA modification GTPase TrmE [Escherichia coli EC1864]
gi|425388297|ref|ZP_18771841.1| tRNA modification GTPase TrmE [Escherichia coli EC1866]
gi|425394991|ref|ZP_18778085.1| tRNA modification GTPase TrmE [Escherichia coli EC1868]
gi|425401082|ref|ZP_18783773.1| tRNA modification GTPase TrmE [Escherichia coli EC1869]
gi|425407178|ref|ZP_18789384.1| tRNA modification GTPase TrmE [Escherichia coli EC1870]
gi|425413537|ref|ZP_18795284.1| tRNA modification GTPase TrmE [Escherichia coli NE098]
gi|425419850|ref|ZP_18801107.1| tRNA modification GTPase TrmE [Escherichia coli FRIK523]
gi|425431150|ref|ZP_18811744.1| tRNA modification GTPase TrmE [Escherichia coli 0.1304]
gi|428949556|ref|ZP_19021814.1| tRNA modification GTPase TrmE [Escherichia coli 88.1467]
gi|428955628|ref|ZP_19027405.1| tRNA modification GTPase TrmE [Escherichia coli 88.1042]
gi|428961647|ref|ZP_19032913.1| tRNA modification GTPase TrmE [Escherichia coli 89.0511]
gi|428968249|ref|ZP_19038941.1| tRNA modification GTPase TrmE [Escherichia coli 90.0091]
gi|428974005|ref|ZP_19044302.1| tRNA modification GTPase TrmE [Escherichia coli 90.0039]
gi|428980390|ref|ZP_19050187.1| tRNA modification GTPase TrmE [Escherichia coli 90.2281]
gi|428986214|ref|ZP_19055589.1| tRNA modification GTPase TrmE [Escherichia coli 93.0055]
gi|428992342|ref|ZP_19061316.1| tRNA modification GTPase TrmE [Escherichia coli 93.0056]
gi|428998237|ref|ZP_19066816.1| tRNA modification GTPase TrmE [Escherichia coli 94.0618]
gi|429004619|ref|ZP_19072669.1| tRNA modification GTPase TrmE [Escherichia coli 95.0183]
gi|429010633|ref|ZP_19078031.1| tRNA modification GTPase TrmE [Escherichia coli 95.1288]
gi|429017128|ref|ZP_19083991.1| tRNA modification GTPase TrmE [Escherichia coli 95.0943]
gi|429022904|ref|ZP_19089407.1| tRNA modification GTPase TrmE [Escherichia coli 96.0428]
gi|429029038|ref|ZP_19095005.1| tRNA modification GTPase TrmE [Escherichia coli 96.0427]
gi|429035194|ref|ZP_19100703.1| tRNA modification GTPase TrmE [Escherichia coli 96.0939]
gi|429041294|ref|ZP_19106371.1| tRNA modification GTPase TrmE [Escherichia coli 96.0932]
gi|429047164|ref|ZP_19111862.1| tRNA modification GTPase TrmE [Escherichia coli 96.0107]
gi|429052481|ref|ZP_19117039.1| tRNA modification GTPase TrmE [Escherichia coli 97.0003]
gi|429058033|ref|ZP_19122284.1| tRNA modification GTPase TrmE [Escherichia coli 97.1742]
gi|429063545|ref|ZP_19127513.1| tRNA modification GTPase TrmE [Escherichia coli 97.0007]
gi|429069748|ref|ZP_19133178.1| tRNA modification GTPase TrmE [Escherichia coli 99.0672]
gi|429075538|ref|ZP_19138782.1| tRNA modification GTPase TrmE [Escherichia coli 99.0678]
gi|429080735|ref|ZP_19143862.1| tRNA modification GTPase TrmE [Escherichia coli 99.0713]
gi|429828955|ref|ZP_19359941.1| tRNA modification GTPase TrmE [Escherichia coli 96.0109]
gi|429835407|ref|ZP_19365654.1| tRNA modification GTPase TrmE [Escherichia coli 97.0010]
gi|444927447|ref|ZP_21246704.1| tRNA modification GTPase TrmE [Escherichia coli 09BKT078844]
gi|444933055|ref|ZP_21252059.1| tRNA modification GTPase TrmE [Escherichia coli 99.0814]
gi|444938527|ref|ZP_21257255.1| tRNA modification GTPase TrmE [Escherichia coli 99.0815]
gi|444944126|ref|ZP_21262606.1| tRNA modification GTPase TrmE [Escherichia coli 99.0816]
gi|444949546|ref|ZP_21267834.1| tRNA modification GTPase TrmE [Escherichia coli 99.0839]
gi|444955260|ref|ZP_21273321.1| tRNA modification GTPase TrmE [Escherichia coli 99.0848]
gi|444960637|ref|ZP_21278453.1| tRNA modification GTPase TrmE [Escherichia coli 99.1753]
gi|444965856|ref|ZP_21283414.1| tRNA modification GTPase TrmE [Escherichia coli 99.1775]
gi|444971883|ref|ZP_21289218.1| tRNA modification GTPase TrmE [Escherichia coli 99.1793]
gi|444977184|ref|ZP_21294256.1| tRNA modification GTPase TrmE [Escherichia coli 99.1805]
gi|444982527|ref|ZP_21299424.1| tRNA modification GTPase TrmE [Escherichia coli ATCC 700728]
gi|444987936|ref|ZP_21304704.1| tRNA modification GTPase TrmE [Escherichia coli PA11]
gi|444993247|ref|ZP_21309879.1| tRNA modification GTPase TrmE [Escherichia coli PA19]
gi|444998491|ref|ZP_21314981.1| tRNA modification GTPase TrmE [Escherichia coli PA13]
gi|445004039|ref|ZP_21320419.1| tRNA modification GTPase TrmE [Escherichia coli PA2]
gi|445009403|ref|ZP_21325629.1| tRNA modification GTPase TrmE [Escherichia coli PA47]
gi|445014533|ref|ZP_21330629.1| tRNA modification GTPase TrmE [Escherichia coli PA48]
gi|445020456|ref|ZP_21336412.1| tRNA modification GTPase TrmE [Escherichia coli PA8]
gi|445025816|ref|ZP_21341630.1| tRNA modification GTPase TrmE [Escherichia coli 7.1982]
gi|445031272|ref|ZP_21346929.1| tRNA modification GTPase TrmE [Escherichia coli 99.1781]
gi|445036695|ref|ZP_21352213.1| tRNA modification GTPase TrmE [Escherichia coli 99.1762]
gi|445042369|ref|ZP_21357732.1| tRNA modification GTPase TrmE [Escherichia coli PA35]
gi|445047582|ref|ZP_21362820.1| tRNA modification GTPase TrmE [Escherichia coli 3.4880]
gi|445053144|ref|ZP_21368155.1| tRNA modification GTPase TrmE [Escherichia coli 95.0083]
gi|445061186|ref|ZP_21373694.1| tRNA modification GTPase TrmE [Escherichia coli 99.0670]
gi|452967329|ref|ZP_21965556.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4009]
gi|21363001|sp|Q8XB41.1|MNME_ECO57 RecName: Full=tRNA modification GTPase MnmE
gi|254811478|sp|B5YXB0.1|MNME_ECO5E RecName: Full=tRNA modification GTPase MnmE
gi|13364116|dbj|BAB38064.1| GTP-binding protein in thiophene and furan oxidation [Escherichia
coli O157:H7 str. Sakai]
gi|187771576|gb|EDU35420.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4196]
gi|188016998|gb|EDU55120.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4113]
gi|189002302|gb|EDU71288.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4076]
gi|189359120|gb|EDU77539.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4401]
gi|189364418|gb|EDU82837.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4486]
gi|189369584|gb|EDU88000.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4501]
gi|189373460|gb|EDU91876.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC869]
gi|189378836|gb|EDU97252.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC508]
gi|208727841|gb|EDZ77442.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4206]
gi|208735462|gb|EDZ84149.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4045]
gi|208740195|gb|EDZ87877.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4042]
gi|209157338|gb|ACI34771.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EC4115]
gi|209754068|gb|ACI75341.1| hypothetical protein ECs4641 [Escherichia coli]
gi|209754070|gb|ACI75342.1| hypothetical protein ECs4641 [Escherichia coli]
gi|209754072|gb|ACI75343.1| hypothetical protein ECs4641 [Escherichia coli]
gi|209754074|gb|ACI75344.1| hypothetical protein ECs4641 [Escherichia coli]
gi|209754076|gb|ACI75345.1| hypothetical protein ECs4641 [Escherichia coli]
gi|217321124|gb|EEC29548.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
TW14588]
gi|254595109|gb|ACT74470.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Escherichia
coli O157:H7 str. TW14359]
gi|290764998|gb|ADD58959.1| tRNA modification GTPase trmE [Escherichia coli O55:H7 str. CB9615]
gi|320191194|gb|EFW65844.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
O157:H7 str. EC1212]
gi|320639432|gb|EFX09047.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. G5101]
gi|320644875|gb|EFX13911.1| tRNA modification GTPase TrmE [Escherichia coli O157:H- str.
493-89]
gi|320650139|gb|EFX18635.1| tRNA modification GTPase TrmE [Escherichia coli O157:H- str. H
2687]
gi|320655487|gb|EFX23422.1| tRNA modification GTPase TrmE [Escherichia coli O55:H7 str. 3256-97
TW 07815]
gi|320661113|gb|EFX28549.1| tRNA modification GTPase TrmE [Escherichia coli O55:H7 str. USDA
5905]
gi|320666239|gb|EFX33245.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
LSU-61]
gi|326337245|gb|EGD61080.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
O157:H7 str. 1044]
gi|326341616|gb|EGD65405.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
O157:H7 str. 1125]
gi|374361160|gb|AEZ42867.1| tRNA modification GTPase TrmE [Escherichia coli O55:H7 str.
RM12579]
gi|377889279|gb|EHU53745.1| tRNA modification GTPase TrmE [Escherichia coli DEC3A]
gi|377889972|gb|EHU54431.1| tRNA modification GTPase TrmE [Escherichia coli DEC3B]
gi|377902763|gb|EHU67066.1| tRNA modification GTPase TrmE [Escherichia coli DEC3C]
gi|377905676|gb|EHU69937.1| tRNA modification GTPase TrmE [Escherichia coli DEC3D]
gi|377907030|gb|EHU71267.1| tRNA modification GTPase TrmE [Escherichia coli DEC3E]
gi|377917478|gb|EHU81539.1| tRNA modification GTPase TrmE [Escherichia coli DEC3F]
gi|377923184|gb|EHU87152.1| tRNA modification GTPase TrmE [Escherichia coli DEC4A]
gi|377927956|gb|EHU91871.1| tRNA modification GTPase TrmE [Escherichia coli DEC4B]
gi|377937468|gb|EHV01245.1| tRNA modification GTPase TrmE [Escherichia coli DEC4D]
gi|377938097|gb|EHV01866.1| tRNA modification GTPase TrmE [Escherichia coli DEC4C]
gi|377944300|gb|EHV08005.1| tRNA modification GTPase TrmE [Escherichia coli DEC4E]
gi|377954831|gb|EHV18390.1| tRNA modification GTPase TrmE [Escherichia coli DEC4F]
gi|377957594|gb|EHV21125.1| tRNA modification GTPase TrmE [Escherichia coli DEC5A]
gi|377961834|gb|EHV25299.1| tRNA modification GTPase TrmE [Escherichia coli DEC5B]
gi|377970017|gb|EHV33389.1| tRNA modification GTPase TrmE [Escherichia coli DEC5C]
gi|377970632|gb|EHV33991.1| tRNA modification GTPase TrmE [Escherichia coli DEC5D]
gi|377981195|gb|EHV44455.1| tRNA modification GTPase TrmE [Escherichia coli DEC5E]
gi|386798395|gb|AFJ31429.1| tRNA modification GTPase TrmE [Escherichia coli Xuzhou21]
gi|390637763|gb|EIN17303.1| tRNA modification GTPase TrmE [Escherichia coli FRIK1996]
gi|390638267|gb|EIN17781.1| tRNA modification GTPase TrmE [Escherichia coli FDA505]
gi|390638943|gb|EIN18432.1| tRNA modification GTPase TrmE [Escherichia coli FDA517]
gi|390656339|gb|EIN34222.1| tRNA modification GTPase TrmE [Escherichia coli FRIK1985]
gi|390656900|gb|EIN34740.1| tRNA modification GTPase TrmE [Escherichia coli 93-001]
gi|390659868|gb|EIN37607.1| tRNA modification GTPase TrmE [Escherichia coli FRIK1990]
gi|390674431|gb|EIN50625.1| tRNA modification GTPase TrmE [Escherichia coli PA3]
gi|390677540|gb|EIN53566.1| tRNA modification GTPase TrmE [Escherichia coli PA5]
gi|390681080|gb|EIN56885.1| tRNA modification GTPase TrmE [Escherichia coli PA9]
gi|390692282|gb|EIN66976.1| tRNA modification GTPase TrmE [Escherichia coli PA10]
gi|390696440|gb|EIN70899.1| tRNA modification GTPase TrmE [Escherichia coli PA14]
gi|390697721|gb|EIN72128.1| tRNA modification GTPase TrmE [Escherichia coli PA15]
gi|390711400|gb|EIN84373.1| tRNA modification GTPase TrmE [Escherichia coli PA22]
gi|390718246|gb|EIN91003.1| tRNA modification GTPase TrmE [Escherichia coli PA24]
gi|390718652|gb|EIN91403.1| tRNA modification GTPase TrmE [Escherichia coli PA25]
gi|390724473|gb|EIN97023.1| tRNA modification GTPase TrmE [Escherichia coli PA28]
gi|390737647|gb|EIO08930.1| tRNA modification GTPase TrmE [Escherichia coli PA31]
gi|390737880|gb|EIO09129.1| tRNA modification GTPase TrmE [Escherichia coli PA32]
gi|390741560|gb|EIO12618.1| tRNA modification GTPase TrmE [Escherichia coli PA33]
gi|390756036|gb|EIO25557.1| tRNA modification GTPase TrmE [Escherichia coli PA40]
gi|390758992|gb|EIO28403.1| tRNA modification GTPase TrmE [Escherichia coli PA39]
gi|390763048|gb|EIO32298.1| tRNA modification GTPase TrmE [Escherichia coli PA41]
gi|390765120|gb|EIO34302.1| tRNA modification GTPase TrmE [Escherichia coli PA42]
gi|390779876|gb|EIO47590.1| tRNA modification GTPase TrmE [Escherichia coli TW06591]
gi|390786182|gb|EIO53705.1| tRNA modification GTPase TrmE [Escherichia coli TW07945]
gi|390787278|gb|EIO54770.1| tRNA modification GTPase TrmE [Escherichia coli TW10246]
gi|390793189|gb|EIO60533.1| tRNA modification GTPase TrmE [Escherichia coli TW11039]
gi|390800370|gb|EIO67462.1| tRNA modification GTPase TrmE [Escherichia coli TW09098]
gi|390805181|gb|EIO72129.1| tRNA modification GTPase TrmE [Escherichia coli TW09109]
gi|390813721|gb|EIO80323.1| tRNA modification GTPase TrmE [Escherichia coli TW10119]
gi|390822520|gb|EIO88635.1| tRNA modification GTPase TrmE [Escherichia coli TW09195]
gi|390822710|gb|EIO88807.1| tRNA modification GTPase TrmE [Escherichia coli EC4203]
gi|390827786|gb|EIO93518.1| tRNA modification GTPase TrmE [Escherichia coli EC4196]
gi|390841204|gb|EIP05173.1| tRNA modification GTPase TrmE [Escherichia coli TW14313]
gi|390843075|gb|EIP06894.1| tRNA modification GTPase TrmE [Escherichia coli TW14301]
gi|390847923|gb|EIP11428.1| tRNA modification GTPase TrmE [Escherichia coli EC4421]
gi|390858428|gb|EIP20820.1| tRNA modification GTPase TrmE [Escherichia coli EC4422]
gi|390862800|gb|EIP24971.1| tRNA modification GTPase TrmE [Escherichia coli EC4013]
gi|390866851|gb|EIP28762.1| tRNA modification GTPase TrmE [Escherichia coli EC4402]
gi|390875262|gb|EIP36325.1| tRNA modification GTPase TrmE [Escherichia coli EC4439]
gi|390880652|gb|EIP41321.1| tRNA modification GTPase TrmE [Escherichia coli EC4436]
gi|390890540|gb|EIP50206.1| tRNA modification GTPase TrmE [Escherichia coli EC4437]
gi|390891992|gb|EIP51600.1| tRNA modification GTPase TrmE [Escherichia coli EC4448]
gi|390898026|gb|EIP57318.1| tRNA modification GTPase TrmE [Escherichia coli EC1738]
gi|390906112|gb|EIP65026.1| tRNA modification GTPase TrmE [Escherichia coli EC1734]
gi|390916075|gb|EIP74563.1| tRNA modification GTPase TrmE [Escherichia coli EC1863]
gi|390916148|gb|EIP74631.1| tRNA modification GTPase TrmE [Escherichia coli EC1845]
gi|408061575|gb|EKG96088.1| tRNA modification GTPase TrmE [Escherichia coli PA7]
gi|408062061|gb|EKG96569.1| tRNA modification GTPase TrmE [Escherichia coli FRIK920]
gi|408065974|gb|EKH00441.1| tRNA modification GTPase TrmE [Escherichia coli PA34]
gi|408075939|gb|EKH10169.1| tRNA modification GTPase TrmE [Escherichia coli FDA506]
gi|408080415|gb|EKH14490.1| tRNA modification GTPase TrmE [Escherichia coli FDA507]
gi|408088552|gb|EKH21913.1| tRNA modification GTPase TrmE [Escherichia coli FDA504]
gi|408094728|gb|EKH27738.1| tRNA modification GTPase TrmE [Escherichia coli FRIK1999]
gi|408105942|gb|EKH38074.1| tRNA modification GTPase TrmE [Escherichia coli NE1487]
gi|408112653|gb|EKH44288.1| tRNA modification GTPase TrmE [Escherichia coli NE037]
gi|408118959|gb|EKH50064.1| tRNA modification GTPase TrmE [Escherichia coli FRIK2001]
gi|408125086|gb|EKH55715.1| tRNA modification GTPase TrmE [Escherichia coli PA4]
gi|408134920|gb|EKH64732.1| tRNA modification GTPase TrmE [Escherichia coli PA23]
gi|408137117|gb|EKH66832.1| tRNA modification GTPase TrmE [Escherichia coli PA49]
gi|408143910|gb|EKH73170.1| tRNA modification GTPase TrmE [Escherichia coli PA45]
gi|408152341|gb|EKH80781.1| tRNA modification GTPase TrmE [Escherichia coli TT12B]
gi|408157350|gb|EKH85504.1| tRNA modification GTPase TrmE [Escherichia coli MA6]
gi|408161444|gb|EKH89400.1| tRNA modification GTPase TrmE [Escherichia coli 5905]
gi|408170560|gb|EKH97740.1| tRNA modification GTPase TrmE [Escherichia coli CB7326]
gi|408177475|gb|EKI04269.1| tRNA modification GTPase TrmE [Escherichia coli EC96038]
gi|408180487|gb|EKI07097.1| tRNA modification GTPase TrmE [Escherichia coli 5412]
gi|408212611|gb|EKI37132.1| tRNA modification GTPase TrmE [Escherichia coli PA38]
gi|408223777|gb|EKI47527.1| tRNA modification GTPase TrmE [Escherichia coli EC1735]
gi|408235285|gb|EKI58251.1| tRNA modification GTPase TrmE [Escherichia coli EC1736]
gi|408238367|gb|EKI61174.1| tRNA modification GTPase TrmE [Escherichia coli EC1737]
gi|408243424|gb|EKI65946.1| tRNA modification GTPase TrmE [Escherichia coli EC1846]
gi|408252259|gb|EKI73937.1| tRNA modification GTPase TrmE [Escherichia coli EC1847]
gi|408256341|gb|EKI77724.1| tRNA modification GTPase TrmE [Escherichia coli EC1848]
gi|408262997|gb|EKI83892.1| tRNA modification GTPase TrmE [Escherichia coli EC1849]
gi|408271229|gb|EKI91366.1| tRNA modification GTPase TrmE [Escherichia coli EC1850]
gi|408274368|gb|EKI94382.1| tRNA modification GTPase TrmE [Escherichia coli EC1856]
gi|408282463|gb|EKJ01770.1| tRNA modification GTPase TrmE [Escherichia coli EC1862]
gi|408288702|gb|EKJ07517.1| tRNA modification GTPase TrmE [Escherichia coli EC1864]
gi|408303869|gb|EKJ21317.1| tRNA modification GTPase TrmE [Escherichia coli EC1868]
gi|408304726|gb|EKJ22148.1| tRNA modification GTPase TrmE [Escherichia coli EC1866]
gi|408316195|gb|EKJ32488.1| tRNA modification GTPase TrmE [Escherichia coli EC1869]
gi|408321458|gb|EKJ37489.1| tRNA modification GTPase TrmE [Escherichia coli EC1870]
gi|408323270|gb|EKJ39233.1| tRNA modification GTPase TrmE [Escherichia coli NE098]
gi|408334198|gb|EKJ49097.1| tRNA modification GTPase TrmE [Escherichia coli FRIK523]
gi|408342320|gb|EKJ56749.1| tRNA modification GTPase TrmE [Escherichia coli 0.1304]
gi|408545192|gb|EKK22631.1| tRNA modification GTPase TrmE [Escherichia coli 5.2239]
gi|408545825|gb|EKK23249.1| tRNA modification GTPase TrmE [Escherichia coli 3.4870]
gi|408546400|gb|EKK23815.1| tRNA modification GTPase TrmE [Escherichia coli 6.0172]
gi|408564068|gb|EKK40188.1| tRNA modification GTPase TrmE [Escherichia coli 8.0586]
gi|408575856|gb|EKK51499.1| tRNA modification GTPase TrmE [Escherichia coli 10.0833]
gi|408578829|gb|EKK54335.1| tRNA modification GTPase TrmE [Escherichia coli 8.2524]
gi|408588479|gb|EKK63052.1| tRNA modification GTPase TrmE [Escherichia coli 10.0869]
gi|408593494|gb|EKK67804.1| tRNA modification GTPase TrmE [Escherichia coli 88.0221]
gi|408609438|gb|EKK82819.1| tRNA modification GTPase TrmE [Escherichia coli 10.0821]
gi|427201528|gb|EKV71909.1| tRNA modification GTPase TrmE [Escherichia coli 88.1042]
gi|427201744|gb|EKV72113.1| tRNA modification GTPase TrmE [Escherichia coli 89.0511]
gi|427204923|gb|EKV75185.1| tRNA modification GTPase TrmE [Escherichia coli 88.1467]
gi|427218040|gb|EKV87084.1| tRNA modification GTPase TrmE [Escherichia coli 90.0091]
gi|427221423|gb|EKV90269.1| tRNA modification GTPase TrmE [Escherichia coli 90.2281]
gi|427224482|gb|EKV93190.1| tRNA modification GTPase TrmE [Escherichia coli 90.0039]
gi|427238473|gb|EKW05990.1| tRNA modification GTPase TrmE [Escherichia coli 93.0056]
gi|427238617|gb|EKW06132.1| tRNA modification GTPase TrmE [Escherichia coli 93.0055]
gi|427242965|gb|EKW10360.1| tRNA modification GTPase TrmE [Escherichia coli 94.0618]
gi|427256019|gb|EKW22245.1| tRNA modification GTPase TrmE [Escherichia coli 95.0183]
gi|427257650|gb|EKW23768.1| tRNA modification GTPase TrmE [Escherichia coli 95.0943]
gi|427259133|gb|EKW25206.1| tRNA modification GTPase TrmE [Escherichia coli 95.1288]
gi|427273265|gb|EKW37954.1| tRNA modification GTPase TrmE [Escherichia coli 96.0428]
gi|427275662|gb|EKW40273.1| tRNA modification GTPase TrmE [Escherichia coli 96.0427]
gi|427280695|gb|EKW45047.1| tRNA modification GTPase TrmE [Escherichia coli 96.0939]
gi|427289270|gb|EKW52846.1| tRNA modification GTPase TrmE [Escherichia coli 96.0932]
gi|427296000|gb|EKW59072.1| tRNA modification GTPase TrmE [Escherichia coli 96.0107]
gi|427298112|gb|EKW61134.1| tRNA modification GTPase TrmE [Escherichia coli 97.0003]
gi|427308327|gb|EKW70728.1| tRNA modification GTPase TrmE [Escherichia coli 97.1742]
gi|427311453|gb|EKW73657.1| tRNA modification GTPase TrmE [Escherichia coli 97.0007]
gi|427315931|gb|EKW77906.1| tRNA modification GTPase TrmE [Escherichia coli 99.0672]
gi|427325279|gb|EKW86725.1| tRNA modification GTPase TrmE [Escherichia coli 99.0678]
gi|427326588|gb|EKW87997.1| tRNA modification GTPase TrmE [Escherichia coli 99.0713]
gi|429251018|gb|EKY35651.1| tRNA modification GTPase TrmE [Escherichia coli 96.0109]
gi|429251653|gb|EKY36236.1| tRNA modification GTPase TrmE [Escherichia coli 97.0010]
gi|444535108|gb|ELV15241.1| tRNA modification GTPase TrmE [Escherichia coli 99.0814]
gi|444536677|gb|ELV16680.1| tRNA modification GTPase TrmE [Escherichia coli 09BKT078844]
gi|444545410|gb|ELV24310.1| tRNA modification GTPase TrmE [Escherichia coli 99.0815]
gi|444554731|gb|ELV32271.1| tRNA modification GTPase TrmE [Escherichia coli 99.0816]
gi|444554831|gb|ELV32353.1| tRNA modification GTPase TrmE [Escherichia coli 99.0839]
gi|444559649|gb|ELV36861.1| tRNA modification GTPase TrmE [Escherichia coli 99.0848]
gi|444569139|gb|ELV45765.1| tRNA modification GTPase TrmE [Escherichia coli 99.1753]
gi|444572748|gb|ELV49161.1| tRNA modification GTPase TrmE [Escherichia coli 99.1775]
gi|444576298|gb|ELV52491.1| tRNA modification GTPase TrmE [Escherichia coli 99.1793]
gi|444588435|gb|ELV63813.1| tRNA modification GTPase TrmE [Escherichia coli 99.1805]
gi|444589350|gb|ELV64686.1| tRNA modification GTPase TrmE [Escherichia coli ATCC 700728]
gi|444589722|gb|ELV65050.1| tRNA modification GTPase TrmE [Escherichia coli PA11]
gi|444603608|gb|ELV78309.1| tRNA modification GTPase TrmE [Escherichia coli PA13]
gi|444603793|gb|ELV78488.1| tRNA modification GTPase TrmE [Escherichia coli PA19]
gi|444612666|gb|ELV86951.1| tRNA modification GTPase TrmE [Escherichia coli PA2]
gi|444619729|gb|ELV93759.1| tRNA modification GTPase TrmE [Escherichia coli PA47]
gi|444620713|gb|ELV94710.1| tRNA modification GTPase TrmE [Escherichia coli PA48]
gi|444627181|gb|ELW00959.1| tRNA modification GTPase TrmE [Escherichia coli PA8]
gi|444635486|gb|ELW08913.1| tRNA modification GTPase TrmE [Escherichia coli 7.1982]
gi|444637659|gb|ELW11025.1| tRNA modification GTPase TrmE [Escherichia coli 99.1781]
gi|444642325|gb|ELW15521.1| tRNA modification GTPase TrmE [Escherichia coli 99.1762]
gi|444651910|gb|ELW24695.1| tRNA modification GTPase TrmE [Escherichia coli PA35]
gi|444657172|gb|ELW29665.1| tRNA modification GTPase TrmE [Escherichia coli 3.4880]
gi|444659962|gb|ELW32347.1| tRNA modification GTPase TrmE [Escherichia coli 95.0083]
gi|444667047|gb|ELW39096.1| tRNA modification GTPase TrmE [Escherichia coli 99.0670]
Length = 454
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|422353578|ref|ZP_16434329.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 117-3]
gi|324018442|gb|EGB87661.1| tRNA modification GTPase TrmE [Escherichia coli MS 117-3]
Length = 479
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 40 GRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 94
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 95 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 154
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 155 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 211
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 212 ---------GKIEAQL-------------------------------NDVIAD--LDAVR 229
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 230 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 274
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 275 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 306
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 11/141 (7%)
Query: 6 KKAAKEKAVIFFSRRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQ 65
++A K +A S R + ++ +TI A ++ G+ GV ++R+SG +++
Sbjct: 9 RRADKHRASATQSNR-NIMSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLG---- 63
Query: 66 KVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSM 120
K+PKPRYA D VLD+G+ LWFP + G V+ + GP L+ LK +
Sbjct: 64 KLPKPRYADYLPFKD-ADGSVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRI 122
Query: 121 ACYPDQKVSKPRYASLRNIVD 141
P ++++P S R ++
Sbjct: 123 LTIPGLRIARPGEFSERAFLN 143
>gi|190171254|gb|ACE63697.1| ThdF [Leclercia adecarboxylata]
Length = 439
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 168/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISGQKAREVAEAVLG----KLPKPRYADYLPFKD-TDGTALDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 178
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +V+ N L+ VR
Sbjct: 179 ---------GKIEAQ--------------LNAVM-------------------NDLDAVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 273
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++R+SG +++ K+PKPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISGQKAREVAEAVLG----KLPKPRYADYLPFKD-TDGTALDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 110
>gi|300932339|ref|ZP_07147606.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 187-1]
gi|300459909|gb|EFK23402.1| tRNA modification GTPase TrmE [Escherichia coli MS 187-1]
Length = 474
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 35 GRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 89
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 90 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 149
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 150 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 206
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 207 ---------GKIEAQL-------------------------------NDVIAD--LDAVR 224
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 225 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 269
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 270 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 301
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 11/141 (7%)
Query: 6 KKAAKEKAVIFFSRRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQ 65
++A K +A S R + ++ +TI A ++ G+ GV ++R+SG +++
Sbjct: 4 RRADKHRASATQSNR-NIMSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLG---- 58
Query: 66 KVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSM 120
K+PKPRYA D VLD+G+ LWFP + G V+ + GP L+ LK +
Sbjct: 59 KLPKPRYADYLPFKD-ADGSVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRI 117
Query: 121 ACYPDQKVSKPRYASLRNIVD 141
P ++++P S R ++
Sbjct: 118 LTIPGLRIARPGEFSERAFLN 138
>gi|86359701|ref|YP_471593.1| tRNA modification GTPase TrmE [Rhizobium etli CFN 42]
gi|86283803|gb|ABC92866.1| GTP-binding protein in thiophene and furan oxidation protein
[Rhizobium etli CFN 42]
Length = 458
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 129/335 (38%), Positives = 173/335 (51%), Gaps = 65/335 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GVS++R+SGP T N L +A V R AS R I +E + D GL L+FP P+
Sbjct: 37 SGVSIVRISGPLTRNILIRLAG----SVPADRSASYRTIRTRNNEPI-DNGLVLFFPGPH 91
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGED E Q+HGS AV+ A+ L +PG+R A GEFS+RAF N KLDL + E L D
Sbjct: 92 SFTGEDVAELQIHGSKAVLAALFFELGDIPGVRMANEGEFSRRAFENGKLDLVEVEGLAD 151
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI AETE+Q R+L +E A
Sbjct: 152 LISAETEMQ-------------------RRLAVEQSAG---------------------- 170
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
V ++ S K + +R R A +EA +DF +++ + ++ + V +
Sbjct: 171 -GVSAIYDSWAKRL-------IRAR---------ALIEAELDFPDEDDVPGSVSDMVWTD 213
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
+ +L I H++ S G IR G K VI G PN GKSSL+N L ++ ++IVT I GTT
Sbjct: 214 MKRLRDDIGLHLK-SASAGEIIRDGFKVVIAGAPNAGKSSLLNALARRDVAIVTDIAGTT 272
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
RDV++ LDI GY V L DTAGLR D +E EG
Sbjct: 273 RDVLQVDLDIDGYLVKLYDTAGLR-QADDRVEMEG 306
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ +TI+ALSSG GVS++R+SGP T N L +A VP R AS R I ++
Sbjct: 23 LSDTIYALSSGAPPSGVSIVRISGPLTRNILIRLAG----SVPADRSASYRTIRTRNNEP 78
Query: 86 VLDEGLCLWFP 96
+ D GL L+FP
Sbjct: 79 I-DNGLVLFFP 88
>gi|16131574|ref|NP_418162.1| GTPase [Escherichia coli str. K-12 substr. MG1655]
gi|82546029|ref|YP_409976.1| tRNA modification GTPase TrmE [Shigella boydii Sb227]
gi|170022257|ref|YP_001727211.1| tRNA modification GTPase TrmE [Escherichia coli ATCC 8739]
gi|170083208|ref|YP_001732528.1| tRNA modification GTPase TrmE [Escherichia coli str. K-12 substr.
DH10B]
gi|187732019|ref|YP_001882460.1| tRNA modification GTPase TrmE [Shigella boydii CDC 3083-94]
gi|188493740|ref|ZP_03001010.1| tRNA modification GTPase TrmE [Escherichia coli 53638]
gi|209921183|ref|YP_002295267.1| tRNA modification GTPase TrmE [Escherichia coli SE11]
gi|218556273|ref|YP_002389187.1| tRNA modification GTPase TrmE [Escherichia coli IAI1]
gi|238902797|ref|YP_002928593.1| tRNA modification GTPase TrmE [Escherichia coli BW2952]
gi|293413161|ref|ZP_06655827.1| tRNA modification GTPase TrmE [Escherichia coli B354]
gi|300917463|ref|ZP_07134124.1| tRNA modification GTPase TrmE [Escherichia coli MS 115-1]
gi|301020896|ref|ZP_07184953.1| tRNA modification GTPase TrmE [Escherichia coli MS 69-1]
gi|301644379|ref|ZP_07244380.1| tRNA modification GTPase TrmE [Escherichia coli MS 146-1]
gi|331644431|ref|ZP_08345560.1| tRNA modification GTPase TrmE [Escherichia coli H736]
gi|331675198|ref|ZP_08375951.1| tRNA modification GTPase TrmE [Escherichia coli TA280]
gi|331685431|ref|ZP_08386017.1| tRNA modification GTPase TrmE [Escherichia coli H299]
gi|332282504|ref|ZP_08394917.1| tRNA modification GTPase TrmE [Shigella sp. D9]
gi|386282617|ref|ZP_10060264.1| tRNA modification GTPase mnmE [Escherichia sp. 4_1_40B]
gi|386597747|ref|YP_006094147.1| tRNA modification GTPase TrmE [Escherichia coli DH1]
gi|386616528|ref|YP_006136194.1| tRNA modification GTPase TrmE [Escherichia coli UMNK88]
gi|386706981|ref|YP_006170828.1| tRNA modification GTPase trmE [Escherichia coli P12b]
gi|387614418|ref|YP_006117534.1| tRNA modification GTPase [Escherichia coli ETEC H10407]
gi|387623367|ref|YP_006130995.1| tRNA modification GTPase TrmE [Escherichia coli DH1]
gi|388479534|ref|YP_491728.1| GTPase [Escherichia coli str. K-12 substr. W3110]
gi|404377109|ref|ZP_10982250.1| tRNA modification GTPase mnmE [Escherichia sp. 1_1_43]
gi|415773928|ref|ZP_11486475.1| tRNA modification GTPase TrmE [Escherichia coli 3431]
gi|416269300|ref|ZP_11642414.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Shigella dysenteriae
CDC 74-1112]
gi|416297959|ref|ZP_11651800.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Shigella flexneri
CDC 796-83]
gi|417132742|ref|ZP_11977527.1| tRNA modification GTPase TrmE [Escherichia coli 5.0588]
gi|417142260|ref|ZP_11984835.1| tRNA modification GTPase TrmE [Escherichia coli 97.0259]
gi|417169165|ref|ZP_12001420.1| tRNA modification GTPase TrmE [Escherichia coli 99.0741]
gi|417227766|ref|ZP_12029524.1| tRNA modification GTPase TrmE [Escherichia coli 5.0959]
gi|417264138|ref|ZP_12051532.1| tRNA modification GTPase TrmE [Escherichia coli 2.3916]
gi|417273131|ref|ZP_12060478.1| tRNA modification GTPase TrmE [Escherichia coli 2.4168]
gi|417279166|ref|ZP_12066476.1| tRNA modification GTPase TrmE [Escherichia coli 3.2303]
gi|417293593|ref|ZP_12080872.1| tRNA modification GTPase TrmE [Escherichia coli B41]
gi|417310299|ref|ZP_12097115.1| tRNA modification GTPase mnmE [Escherichia coli PCN033]
gi|417610464|ref|ZP_12260955.1| tRNA modification GTPase TrmE [Escherichia coli STEC_DG131-3]
gi|417615374|ref|ZP_12265823.1| tRNA modification GTPase TrmE [Escherichia coli STEC_EH250]
gi|417620383|ref|ZP_12270784.1| tRNA modification GTPase TrmE [Escherichia coli G58-1]
gi|417631154|ref|ZP_12281388.1| tRNA modification GTPase TrmE [Escherichia coli STEC_MHI813]
gi|417636661|ref|ZP_12286868.1| tRNA modification GTPase TrmE [Escherichia coli STEC_S1191]
gi|417641658|ref|ZP_12291784.1| tRNA modification GTPase TrmE [Escherichia coli TX1999]
gi|417684413|ref|ZP_12333753.1| tRNA modification GTPase TrmE [Shigella boydii 3594-74]
gi|417946188|ref|ZP_12589410.1| tRNA modification GTPase TrmE [Escherichia coli XH140A]
gi|417976495|ref|ZP_12617288.1| tRNA modification GTPase TrmE [Escherichia coli XH001]
gi|418305341|ref|ZP_12917135.1| tRNA modification GTPase TrmE [Escherichia coli UMNF18]
gi|418955882|ref|ZP_13507815.1| tRNA modification GTPase TrmE [Escherichia coli J53]
gi|419144824|ref|ZP_13689551.1| tRNA modification GTPase TrmE [Escherichia coli DEC6A]
gi|419150712|ref|ZP_13695359.1| tRNA modification GTPase TrmE [Escherichia coli DEC6B]
gi|419156227|ref|ZP_13700782.1| tRNA modification GTPase TrmE [Escherichia coli DEC6C]
gi|419161583|ref|ZP_13706074.1| tRNA modification GTPase TrmE [Escherichia coli DEC6D]
gi|419166646|ref|ZP_13711095.1| tRNA modification GTPase TrmE [Escherichia coli DEC6E]
gi|419172667|ref|ZP_13716539.1| tRNA modification GTPase TrmE [Escherichia coli DEC7A]
gi|419177365|ref|ZP_13721173.1| tRNA modification GTPase TrmE [Escherichia coli DEC7B]
gi|419183229|ref|ZP_13726835.1| tRNA modification GTPase TrmE [Escherichia coli DEC7C]
gi|419188810|ref|ZP_13732314.1| tRNA modification GTPase TrmE [Escherichia coli DEC7D]
gi|419194194|ref|ZP_13737631.1| tRNA modification GTPase TrmE [Escherichia coli DEC7E]
gi|419372561|ref|ZP_13913665.1| tRNA modification GTPase TrmE [Escherichia coli DEC14A]
gi|419810787|ref|ZP_14335666.1| tRNA modification GTPase TrmE [Escherichia coli O32:H37 str. P4]
gi|419926354|ref|ZP_14444129.1| tRNA modification GTPase TrmE [Escherichia coli 541-15]
gi|419940070|ref|ZP_14456839.1| tRNA modification GTPase TrmE [Escherichia coli 75]
gi|419949565|ref|ZP_14465806.1| tRNA modification GTPase TrmE [Escherichia coli CUMT8]
gi|420328018|ref|ZP_14829756.1| tRNA modification GTPase TrmE [Shigella flexneri CCH060]
gi|420355378|ref|ZP_14856446.1| tRNA modification GTPase TrmE [Shigella boydii 4444-74]
gi|420388063|ref|ZP_14887395.1| tRNA modification GTPase TrmE [Escherichia coli EPECa12]
gi|421684956|ref|ZP_16124733.1| tRNA modification GTPase TrmE [Shigella flexneri 1485-80]
gi|421777124|ref|ZP_16213723.1| tRNA modification GTPase TrmE [Escherichia coli AD30]
gi|422335098|ref|ZP_16416100.1| tRNA modification GTPase mnmE [Escherichia coli 4_1_47FAA]
gi|422768506|ref|ZP_16822230.1| tRNA modification GTPase TrmE [Escherichia coli E1520]
gi|422818873|ref|ZP_16867085.1| tRNA modification GTPase mnmE [Escherichia coli M919]
gi|422976813|ref|ZP_16977191.1| tRNA modification GTPase mnmE [Escherichia coli TA124]
gi|423703234|ref|ZP_17677666.1| tRNA modification GTPase mnmE [Escherichia coli H730]
gi|425117325|ref|ZP_18519102.1| tRNA modification GTPase TrmE [Escherichia coli 8.0566]
gi|425122055|ref|ZP_18523730.1| tRNA modification GTPase TrmE [Escherichia coli 8.0569]
gi|425275007|ref|ZP_18666387.1| tRNA modification GTPase TrmE [Escherichia coli TW15901]
gi|425285585|ref|ZP_18676598.1| tRNA modification GTPase TrmE [Escherichia coli TW00353]
gi|425290922|ref|ZP_18681732.1| tRNA modification GTPase TrmE [Escherichia coli 3006]
gi|425307521|ref|ZP_18697189.1| tRNA modification GTPase TrmE [Escherichia coli N1]
gi|432419242|ref|ZP_19661833.1| tRNA modification GTPase mnmE [Escherichia coli KTE44]
gi|432487474|ref|ZP_19729380.1| tRNA modification GTPase mnmE [Escherichia coli KTE212]
gi|432536119|ref|ZP_19773074.1| tRNA modification GTPase mnmE [Escherichia coli KTE234]
gi|432577986|ref|ZP_19814432.1| tRNA modification GTPase mnmE [Escherichia coli KTE56]
gi|432604553|ref|ZP_19840780.1| tRNA modification GTPase mnmE [Escherichia coli KTE66]
gi|432619030|ref|ZP_19855127.1| tRNA modification GTPase mnmE [Escherichia coli KTE75]
gi|432629341|ref|ZP_19865306.1| tRNA modification GTPase mnmE [Escherichia coli KTE77]
gi|432638937|ref|ZP_19874800.1| tRNA modification GTPase mnmE [Escherichia coli KTE81]
gi|432662967|ref|ZP_19898595.1| tRNA modification GTPase mnmE [Escherichia coli KTE111]
gi|432672810|ref|ZP_19908328.1| tRNA modification GTPase mnmE [Escherichia coli KTE119]
gi|432687549|ref|ZP_19922837.1| tRNA modification GTPase mnmE [Escherichia coli KTE156]
gi|432689045|ref|ZP_19924311.1| tRNA modification GTPase mnmE [Escherichia coli KTE161]
gi|432706450|ref|ZP_19941544.1| tRNA modification GTPase mnmE [Escherichia coli KTE171]
gi|432739214|ref|ZP_19973942.1| tRNA modification GTPase mnmE [Escherichia coli KTE42]
gi|432878087|ref|ZP_20095536.1| tRNA modification GTPase mnmE [Escherichia coli KTE154]
gi|432957673|ref|ZP_20149079.1| tRNA modification GTPase mnmE [Escherichia coli KTE197]
gi|432965472|ref|ZP_20154395.1| tRNA modification GTPase mnmE [Escherichia coli KTE203]
gi|433050180|ref|ZP_20237503.1| tRNA modification GTPase mnmE [Escherichia coli KTE120]
gi|433132294|ref|ZP_20317715.1| tRNA modification GTPase mnmE [Escherichia coli KTE163]
gi|433136968|ref|ZP_20322291.1| tRNA modification GTPase mnmE [Escherichia coli KTE166]
gi|433175609|ref|ZP_20360112.1| tRNA modification GTPase mnmE [Escherichia coli KTE232]
gi|442595556|ref|ZP_21013402.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|450195416|ref|ZP_21892485.1| tRNA modification GTPase TrmE [Escherichia coli SEPT362]
gi|450252603|ref|ZP_21902189.1| tRNA modification GTPase TrmE [Escherichia coli S17]
gi|2851487|sp|P25522.3|MNME_ECOLI RecName: Full=tRNA modification GTPase MnmE
gi|123558283|sp|Q31UW0.1|MNME_SHIBS RecName: Full=tRNA modification GTPase MnmE
gi|189036202|sp|B1IX32.1|MNME_ECOLC RecName: Full=tRNA modification GTPase MnmE
gi|205829137|sp|B1X9T5.1|MNME_ECODH RecName: Full=tRNA modification GTPase MnmE
gi|254811481|sp|B7M559.1|MNME_ECO8A RecName: Full=tRNA modification GTPase MnmE
gi|254811483|sp|B6I3T9.1|MNME_ECOSE RecName: Full=tRNA modification GTPase MnmE
gi|254811497|sp|B2TUS2.1|MNME_SHIB3 RecName: Full=tRNA modification GTPase MnmE
gi|259495841|sp|C4ZYY4.1|MNME_ECOBW RecName: Full=tRNA modification GTPase MnmE
gi|2367268|gb|AAC76729.1| GTPase required for 5-methylaminomethyl-2-thiouridine modification
at tRNA U34 [Escherichia coli str. K-12 substr. MG1655]
gi|81247440|gb|ABB68148.1| ThdF [Shigella boydii Sb227]
gi|85676337|dbj|BAE77587.1| GTPase [Escherichia coli str. K12 substr. W3110]
gi|169757185|gb|ACA79884.1| tRNA modification GTPase TrmE [Escherichia coli ATCC 8739]
gi|169891043|gb|ACB04750.1| GTPase [Escherichia coli str. K-12 substr. DH10B]
gi|187429011|gb|ACD08285.1| tRNA modification GTPase TrmE [Shigella boydii CDC 3083-94]
gi|188488939|gb|EDU64042.1| tRNA modification GTPase TrmE [Escherichia coli 53638]
gi|209914442|dbj|BAG79516.1| GTP-binding protein [Escherichia coli SE11]
gi|218363042|emb|CAR00681.1| GTPase [Escherichia coli IAI1]
gi|226838890|gb|EEH70917.1| tRNA modification GTPase mnmE [Escherichia sp. 1_1_43]
gi|238861389|gb|ACR63387.1| GTPase [Escherichia coli BW2952]
gi|260451436|gb|ACX41858.1| tRNA modification GTPase TrmE [Escherichia coli DH1]
gi|291468294|gb|EFF10789.1| tRNA modification GTPase TrmE [Escherichia coli B354]
gi|300398391|gb|EFJ81929.1| tRNA modification GTPase TrmE [Escherichia coli MS 69-1]
gi|300415307|gb|EFJ98617.1| tRNA modification GTPase TrmE [Escherichia coli MS 115-1]
gi|301077320|gb|EFK92126.1| tRNA modification GTPase TrmE [Escherichia coli MS 146-1]
gi|309704154|emb|CBJ03501.1| probable tRNA modification GTPase [Escherichia coli ETEC H10407]
gi|315138291|dbj|BAJ45450.1| tRNA modification GTPase TrmE [Escherichia coli DH1]
gi|315618588|gb|EFU99174.1| tRNA modification GTPase TrmE [Escherichia coli 3431]
gi|320174820|gb|EFW49943.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Shigella dysenteriae
CDC 74-1112]
gi|320185529|gb|EFW60295.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Shigella flexneri
CDC 796-83]
gi|323934942|gb|EGB31320.1| tRNA modification GTPase TrmE [Escherichia coli E1520]
gi|331036725|gb|EGI08951.1| tRNA modification GTPase TrmE [Escherichia coli H736]
gi|331067643|gb|EGI39045.1| tRNA modification GTPase TrmE [Escherichia coli TA280]
gi|331077802|gb|EGI49014.1| tRNA modification GTPase TrmE [Escherichia coli H299]
gi|332089435|gb|EGI94539.1| tRNA modification GTPase TrmE [Shigella boydii 3594-74]
gi|332104856|gb|EGJ08202.1| tRNA modification GTPase TrmE [Shigella sp. D9]
gi|332345697|gb|AEE59031.1| tRNA modification GTPase TrmE [Escherichia coli UMNK88]
gi|338768147|gb|EGP22951.1| tRNA modification GTPase mnmE [Escherichia coli PCN033]
gi|339417439|gb|AEJ59111.1| tRNA modification GTPase TrmE [Escherichia coli UMNF18]
gi|342362073|gb|EGU26198.1| tRNA modification GTPase TrmE [Escherichia coli XH140A]
gi|344193918|gb|EGV47995.1| tRNA modification GTPase TrmE [Escherichia coli XH001]
gi|345353640|gb|EGW85871.1| tRNA modification GTPase TrmE [Escherichia coli STEC_DG131-3]
gi|345357899|gb|EGW90088.1| tRNA modification GTPase TrmE [Escherichia coli STEC_EH250]
gi|345369600|gb|EGX01582.1| tRNA modification GTPase TrmE [Escherichia coli G58-1]
gi|345370433|gb|EGX02411.1| tRNA modification GTPase TrmE [Escherichia coli STEC_MHI813]
gi|345384927|gb|EGX14779.1| tRNA modification GTPase TrmE [Escherichia coli STEC_S1191]
gi|345390622|gb|EGX20420.1| tRNA modification GTPase TrmE [Escherichia coli TX1999]
gi|359333851|dbj|BAL40298.1| GTPase [Escherichia coli str. K-12 substr. MDS42]
gi|371593863|gb|EHN82738.1| tRNA modification GTPase mnmE [Escherichia coli TA124]
gi|373243886|gb|EHP63382.1| tRNA modification GTPase mnmE [Escherichia coli 4_1_47FAA]
gi|377988993|gb|EHV52163.1| tRNA modification GTPase TrmE [Escherichia coli DEC6B]
gi|377989254|gb|EHV52422.1| tRNA modification GTPase TrmE [Escherichia coli DEC6A]
gi|377993296|gb|EHV56434.1| tRNA modification GTPase TrmE [Escherichia coli DEC6C]
gi|378004091|gb|EHV67122.1| tRNA modification GTPase TrmE [Escherichia coli DEC6D]
gi|378006870|gb|EHV69843.1| tRNA modification GTPase TrmE [Escherichia coli DEC6E]
gi|378011377|gb|EHV74321.1| tRNA modification GTPase TrmE [Escherichia coli DEC7A]
gi|378021124|gb|EHV83846.1| tRNA modification GTPase TrmE [Escherichia coli DEC7C]
gi|378024830|gb|EHV87483.1| tRNA modification GTPase TrmE [Escherichia coli DEC7D]
gi|378029407|gb|EHV92019.1| tRNA modification GTPase TrmE [Escherichia coli DEC7B]
gi|378034615|gb|EHV97180.1| tRNA modification GTPase TrmE [Escherichia coli DEC7E]
gi|378212026|gb|EHX72353.1| tRNA modification GTPase TrmE [Escherichia coli DEC14A]
gi|383105149|gb|AFG42658.1| tRNA modification GTPase trmE [Escherichia coli P12b]
gi|384381273|gb|EIE39132.1| tRNA modification GTPase TrmE [Escherichia coli J53]
gi|385156422|gb|EIF18419.1| tRNA modification GTPase TrmE [Escherichia coli O32:H37 str. P4]
gi|385537676|gb|EIF84546.1| tRNA modification GTPase mnmE [Escherichia coli M919]
gi|385708597|gb|EIG45606.1| tRNA modification GTPase mnmE [Escherichia coli H730]
gi|386120240|gb|EIG68870.1| tRNA modification GTPase mnmE [Escherichia sp. 4_1_40B]
gi|386150596|gb|EIH01885.1| tRNA modification GTPase TrmE [Escherichia coli 5.0588]
gi|386155284|gb|EIH11639.1| tRNA modification GTPase TrmE [Escherichia coli 97.0259]
gi|386170305|gb|EIH42365.1| tRNA modification GTPase TrmE [Escherichia coli 99.0741]
gi|386207101|gb|EII11606.1| tRNA modification GTPase TrmE [Escherichia coli 5.0959]
gi|386221847|gb|EII44276.1| tRNA modification GTPase TrmE [Escherichia coli 2.3916]
gi|386234308|gb|EII66286.1| tRNA modification GTPase TrmE [Escherichia coli 2.4168]
gi|386237943|gb|EII74883.1| tRNA modification GTPase TrmE [Escherichia coli 3.2303]
gi|386251781|gb|EIJ01473.1| tRNA modification GTPase TrmE [Escherichia coli B41]
gi|388382954|gb|EIL44767.1| tRNA modification GTPase TrmE [Escherichia coli 541-15]
gi|388404832|gb|EIL65279.1| tRNA modification GTPase TrmE [Escherichia coli 75]
gi|388418895|gb|EIL78668.1| tRNA modification GTPase TrmE [Escherichia coli CUMT8]
gi|391245683|gb|EIQ04950.1| tRNA modification GTPase TrmE [Shigella flexneri CCH060]
gi|391272682|gb|EIQ31524.1| tRNA modification GTPase TrmE [Shigella boydii 4444-74]
gi|391301735|gb|EIQ59617.1| tRNA modification GTPase TrmE [Escherichia coli EPECa12]
gi|404334922|gb|EJZ61397.1| tRNA modification GTPase TrmE [Shigella flexneri 1485-80]
gi|408189750|gb|EKI15449.1| tRNA modification GTPase TrmE [Escherichia coli TW15901]
gi|408197990|gb|EKI23236.1| tRNA modification GTPase TrmE [Escherichia coli TW00353]
gi|408209161|gb|EKI33769.1| tRNA modification GTPase TrmE [Escherichia coli 3006]
gi|408225241|gb|EKI48928.1| tRNA modification GTPase TrmE [Escherichia coli N1]
gi|408457810|gb|EKJ81602.1| tRNA modification GTPase TrmE [Escherichia coli AD30]
gi|408563705|gb|EKK39836.1| tRNA modification GTPase TrmE [Escherichia coli 8.0566]
gi|408564800|gb|EKK40901.1| tRNA modification GTPase TrmE [Escherichia coli 8.0569]
gi|430936298|gb|ELC56581.1| tRNA modification GTPase mnmE [Escherichia coli KTE44]
gi|431013306|gb|ELD27039.1| tRNA modification GTPase mnmE [Escherichia coli KTE212]
gi|431057492|gb|ELD66935.1| tRNA modification GTPase mnmE [Escherichia coli KTE234]
gi|431111953|gb|ELE15843.1| tRNA modification GTPase mnmE [Escherichia coli KTE56]
gi|431137020|gb|ELE38874.1| tRNA modification GTPase mnmE [Escherichia coli KTE66]
gi|431150545|gb|ELE51595.1| tRNA modification GTPase mnmE [Escherichia coli KTE75]
gi|431160277|gb|ELE60792.1| tRNA modification GTPase mnmE [Escherichia coli KTE77]
gi|431168413|gb|ELE68659.1| tRNA modification GTPase mnmE [Escherichia coli KTE81]
gi|431196664|gb|ELE95577.1| tRNA modification GTPase mnmE [Escherichia coli KTE111]
gi|431207511|gb|ELF05767.1| tRNA modification GTPase mnmE [Escherichia coli KTE119]
gi|431219200|gb|ELF16618.1| tRNA modification GTPase mnmE [Escherichia coli KTE156]
gi|431234515|gb|ELF29914.1| tRNA modification GTPase mnmE [Escherichia coli KTE161]
gi|431240640|gb|ELF35091.1| tRNA modification GTPase mnmE [Escherichia coli KTE171]
gi|431279314|gb|ELF70282.1| tRNA modification GTPase mnmE [Escherichia coli KTE42]
gi|431417327|gb|ELG99790.1| tRNA modification GTPase mnmE [Escherichia coli KTE154]
gi|431463551|gb|ELH43741.1| tRNA modification GTPase mnmE [Escherichia coli KTE197]
gi|431476964|gb|ELH56751.1| tRNA modification GTPase mnmE [Escherichia coli KTE203]
gi|431562027|gb|ELI35363.1| tRNA modification GTPase mnmE [Escherichia coli KTE120]
gi|431642649|gb|ELJ10371.1| tRNA modification GTPase mnmE [Escherichia coli KTE163]
gi|431653165|gb|ELJ20277.1| tRNA modification GTPase mnmE [Escherichia coli KTE166]
gi|431687749|gb|ELJ53291.1| tRNA modification GTPase mnmE [Escherichia coli KTE232]
gi|441604405|emb|CCP98536.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|449314678|gb|EMD04841.1| tRNA modification GTPase TrmE [Escherichia coli S17]
gi|449316409|gb|EMD06525.1| tRNA modification GTPase TrmE [Escherichia coli SEPT362]
Length = 454
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|157163187|ref|YP_001460505.1| tRNA modification GTPase TrmE [Escherichia coli HS]
gi|194435686|ref|ZP_03067789.1| tRNA modification GTPase TrmE [Escherichia coli 101-1]
gi|218697429|ref|YP_002405096.1| tRNA modification GTPase TrmE [Escherichia coli 55989]
gi|251786973|ref|YP_003001277.1| GTP-binding protein with a role in modification of tRNA, subunit of
complex involved in modification of tRNA [Escherichia
coli BL21(DE3)]
gi|253775659|ref|YP_003038490.1| tRNA modification GTPase TrmE [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254163658|ref|YP_003046766.1| tRNA modification GTPase TrmE [Escherichia coli B str. REL606]
gi|254290408|ref|YP_003056156.1| tRNA modification GTPase [Escherichia coli BL21(DE3)]
gi|297520056|ref|ZP_06938442.1| tRNA modification GTPase TrmE [Escherichia coli OP50]
gi|307313225|ref|ZP_07592850.1| tRNA modification GTPase TrmE [Escherichia coli W]
gi|309795744|ref|ZP_07690159.1| tRNA modification GTPase TrmE [Escherichia coli MS 145-7]
gi|312972002|ref|ZP_07786176.1| tRNA modification GTPase TrmE [Escherichia coli 1827-70]
gi|331655368|ref|ZP_08356367.1| tRNA modification GTPase TrmE [Escherichia coli M718]
gi|331670551|ref|ZP_08371390.1| tRNA modification GTPase TrmE [Escherichia coli TA271]
gi|378715365|ref|YP_005280258.1| tRNA modification GTPase TrmE [Escherichia coli KO11FL]
gi|386611095|ref|YP_006126581.1| GTPase [Escherichia coli W]
gi|386699215|ref|YP_006163052.1| tRNA modification GTPase MnmE [Escherichia coli KO11FL]
gi|386711623|ref|YP_006175344.1| tRNA modification GTPase MnmE [Escherichia coli W]
gi|407466716|ref|YP_006786842.1| tRNA modification GTPase TrmE [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407484557|ref|YP_006781707.1| tRNA modification GTPase TrmE [Escherichia coli O104:H4 str.
2011C-3493]
gi|410485105|ref|YP_006772651.1| tRNA modification GTPase TrmE [Escherichia coli O104:H4 str.
2009EL-2050]
gi|416342015|ref|ZP_11676381.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
EC4100B]
gi|417223421|ref|ZP_12026861.1| tRNA modification GTPase TrmE [Escherichia coli 96.154]
gi|417245978|ref|ZP_12039474.1| tRNA modification GTPase TrmE [Escherichia coli 9.0111]
gi|417270005|ref|ZP_12057365.1| tRNA modification GTPase TrmE [Escherichia coli 3.3884]
gi|417604617|ref|ZP_12255179.1| tRNA modification GTPase TrmE [Escherichia coli STEC_94C]
gi|417807390|ref|ZP_12454320.1| tRNA modification GTPase TrmE [Escherichia coli O104:H4 str.
LB226692]
gi|417835132|ref|ZP_12481572.1| tRNA modification GTPase TrmE [Escherichia coli O104:H4 str.
01-09591]
gi|417866333|ref|ZP_12511375.1| hypothetical protein C22711_3263 [Escherichia coli O104:H4 str.
C227-11]
gi|419280543|ref|ZP_13822780.1| tRNA modification GTPase TrmE [Escherichia coli DEC10E]
gi|419347490|ref|ZP_13888857.1| tRNA modification GTPase TrmE [Escherichia coli DEC13A]
gi|419351952|ref|ZP_13893279.1| tRNA modification GTPase TrmE [Escherichia coli DEC13B]
gi|419357422|ref|ZP_13898668.1| tRNA modification GTPase TrmE [Escherichia coli DEC13C]
gi|419362397|ref|ZP_13903603.1| tRNA modification GTPase TrmE [Escherichia coli DEC13D]
gi|419367403|ref|ZP_13908552.1| tRNA modification GTPase TrmE [Escherichia coli DEC13E]
gi|419377835|ref|ZP_13918850.1| tRNA modification GTPase TrmE [Escherichia coli DEC14B]
gi|419383228|ref|ZP_13924169.1| tRNA modification GTPase TrmE [Escherichia coli DEC14C]
gi|419388473|ref|ZP_13929338.1| tRNA modification GTPase TrmE [Escherichia coli DEC14D]
gi|419804165|ref|ZP_14329327.1| tRNA modification GTPase TrmE [Escherichia coli AI27]
gi|422773650|ref|ZP_16827333.1| tRNA modification GTPase TrmE [Escherichia coli E482]
gi|422788575|ref|ZP_16841311.1| tRNA modification GTPase TrmE [Escherichia coli H489]
gi|422792318|ref|ZP_16845019.1| tRNA modification GTPase TrmE [Escherichia coli TA007]
gi|422989978|ref|ZP_16980750.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
C227-11]
gi|422996876|ref|ZP_16987638.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
C236-11]
gi|423001969|ref|ZP_16992722.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
09-7901]
gi|423005625|ref|ZP_16996370.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
04-8351]
gi|423012187|ref|ZP_17002919.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-3677]
gi|423021413|ref|ZP_17012120.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4404]
gi|423026575|ref|ZP_17017270.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4522]
gi|423032403|ref|ZP_17023089.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4623]
gi|423035276|ref|ZP_17025954.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423040398|ref|ZP_17031067.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423047083|ref|ZP_17037742.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423055622|ref|ZP_17044428.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423057625|ref|ZP_17046424.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4632 C5]
gi|423708021|ref|ZP_17682401.1| tRNA modification GTPase mnmE [Escherichia coli B799]
gi|425424722|ref|ZP_18805870.1| tRNA modification GTPase TrmE [Escherichia coli 0.1288]
gi|429721458|ref|ZP_19256373.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429773351|ref|ZP_19305366.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-02030]
gi|429778716|ref|ZP_19310682.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-02033-1]
gi|429782551|ref|ZP_19314476.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-02092]
gi|429787944|ref|ZP_19319831.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-02093]
gi|429793763|ref|ZP_19325605.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-02281]
gi|429800343|ref|ZP_19332132.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-02318]
gi|429803955|ref|ZP_19335712.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-02913]
gi|429808603|ref|ZP_19340319.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-03439]
gi|429814302|ref|ZP_19345973.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-04080]
gi|429819505|ref|ZP_19351135.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-03943]
gi|429905825|ref|ZP_19371801.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429909958|ref|ZP_19375920.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429915858|ref|ZP_19381804.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429920906|ref|ZP_19386833.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429926714|ref|ZP_19392625.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429930646|ref|ZP_19396545.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429937188|ref|ZP_19403073.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429942866|ref|ZP_19408738.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429945545|ref|ZP_19411405.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429953108|ref|ZP_19418953.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429956455|ref|ZP_19422285.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432378943|ref|ZP_19621924.1| tRNA modification GTPase mnmE [Escherichia coli KTE12]
gi|432528569|ref|ZP_19765640.1| tRNA modification GTPase mnmE [Escherichia coli KTE233]
gi|432767142|ref|ZP_20001555.1| tRNA modification GTPase mnmE [Escherichia coli KTE48]
gi|432811458|ref|ZP_20045314.1| tRNA modification GTPase mnmE [Escherichia coli KTE101]
gi|432836705|ref|ZP_20070234.1| tRNA modification GTPase mnmE [Escherichia coli KTE136]
gi|442596189|ref|ZP_21014009.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|166991108|sp|A8A6G8.1|MNME_ECOHS RecName: Full=tRNA modification GTPase MnmE
gi|254811477|sp|B7L851.1|MNME_ECO55 RecName: Full=tRNA modification GTPase MnmE
gi|157068867|gb|ABV08122.1| tRNA modification GTPase TrmE [Escherichia coli HS]
gi|194425229|gb|EDX41213.1| tRNA modification GTPase TrmE [Escherichia coli 101-1]
gi|218354161|emb|CAV00765.1| GTPase [Escherichia coli 55989]
gi|242379246|emb|CAQ34051.1| GTP-binding protein with a role in modification of tRNA, subunit of
complex involved in modification of tRNA [Escherichia
coli BL21(DE3)]
gi|253326703|gb|ACT31305.1| tRNA modification GTPase TrmE [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253975559|gb|ACT41230.1| tRNA modification GTPase [Escherichia coli B str. REL606]
gi|253979715|gb|ACT45385.1| tRNA modification GTPase [Escherichia coli BL21(DE3)]
gi|306906908|gb|EFN37417.1| tRNA modification GTPase TrmE [Escherichia coli W]
gi|308120623|gb|EFO57885.1| tRNA modification GTPase TrmE [Escherichia coli MS 145-7]
gi|310334379|gb|EFQ00584.1| tRNA modification GTPase TrmE [Escherichia coli 1827-70]
gi|315063012|gb|ADT77339.1| GTPase [Escherichia coli W]
gi|320201266|gb|EFW75847.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
EC4100B]
gi|323380926|gb|ADX53194.1| tRNA modification GTPase TrmE [Escherichia coli KO11FL]
gi|323939230|gb|EGB35443.1| tRNA modification GTPase TrmE [Escherichia coli E482]
gi|323959772|gb|EGB55422.1| tRNA modification GTPase TrmE [Escherichia coli H489]
gi|323971184|gb|EGB66430.1| tRNA modification GTPase TrmE [Escherichia coli TA007]
gi|331047383|gb|EGI19461.1| tRNA modification GTPase TrmE [Escherichia coli M718]
gi|331062613|gb|EGI34533.1| tRNA modification GTPase TrmE [Escherichia coli TA271]
gi|340732361|gb|EGR61499.1| tRNA modification GTPase TrmE [Escherichia coli O104:H4 str.
01-09591]
gi|340738118|gb|EGR72369.1| tRNA modification GTPase TrmE [Escherichia coli O104:H4 str.
LB226692]
gi|341919622|gb|EGT69233.1| hypothetical protein C22711_3263 [Escherichia coli O104:H4 str.
C227-11]
gi|345347137|gb|EGW79451.1| tRNA modification GTPase TrmE [Escherichia coli STEC_94C]
gi|354857493|gb|EHF17947.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
C236-11]
gi|354861045|gb|EHF21485.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
C227-11]
gi|354863511|gb|EHF23944.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
04-8351]
gi|354871548|gb|EHF31946.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
09-7901]
gi|354876302|gb|EHF36663.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-3677]
gi|354885429|gb|EHF45727.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4404]
gi|354889247|gb|EHF49499.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4522]
gi|354892590|gb|EHF52798.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4623]
gi|354904667|gb|EHF64757.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354908455|gb|EHF68510.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354910356|gb|EHF70383.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354912445|gb|EHF72445.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4632 C4]
gi|354920616|gb|EHF80549.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-4632 C5]
gi|378123645|gb|EHW85062.1| tRNA modification GTPase TrmE [Escherichia coli DEC10E]
gi|378182634|gb|EHX43284.1| tRNA modification GTPase TrmE [Escherichia coli DEC13A]
gi|378195852|gb|EHX56343.1| tRNA modification GTPase TrmE [Escherichia coli DEC13B]
gi|378196130|gb|EHX56620.1| tRNA modification GTPase TrmE [Escherichia coli DEC13C]
gi|378198969|gb|EHX59438.1| tRNA modification GTPase TrmE [Escherichia coli DEC13D]
gi|378210060|gb|EHX70427.1| tRNA modification GTPase TrmE [Escherichia coli DEC13E]
gi|378214932|gb|EHX75233.1| tRNA modification GTPase TrmE [Escherichia coli DEC14B]
gi|378224132|gb|EHX84337.1| tRNA modification GTPase TrmE [Escherichia coli DEC14C]
gi|378228114|gb|EHX88280.1| tRNA modification GTPase TrmE [Escherichia coli DEC14D]
gi|383390742|gb|AFH15700.1| tRNA modification GTPase MnmE [Escherichia coli KO11FL]
gi|383407315|gb|AFH13558.1| tRNA modification GTPase MnmE [Escherichia coli W]
gi|384472837|gb|EIE56886.1| tRNA modification GTPase TrmE [Escherichia coli AI27]
gi|385708934|gb|EIG45936.1| tRNA modification GTPase mnmE [Escherichia coli B799]
gi|386203223|gb|EII02214.1| tRNA modification GTPase TrmE [Escherichia coli 96.154]
gi|386210163|gb|EII20644.1| tRNA modification GTPase TrmE [Escherichia coli 9.0111]
gi|386228810|gb|EII56166.1| tRNA modification GTPase TrmE [Escherichia coli 3.3884]
gi|406780267|gb|AFS59691.1| tRNA modification GTPase TrmE [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407056854|gb|AFS76905.1| tRNA modification GTPase TrmE [Escherichia coli O104:H4 str.
2011C-3493]
gi|407062751|gb|AFS83798.1| tRNA modification GTPase TrmE [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408340847|gb|EKJ55327.1| tRNA modification GTPase TrmE [Escherichia coli 0.1288]
gi|429355876|gb|EKY92560.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-02030]
gi|429356230|gb|EKY92910.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-02033-1]
gi|429357922|gb|EKY94593.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-02092]
gi|429371290|gb|EKZ07848.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-02093]
gi|429373293|gb|EKZ09840.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-02281]
gi|429376045|gb|EKZ12576.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-02318]
gi|429387620|gb|EKZ24059.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-02913]
gi|429390383|gb|EKZ26797.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-03439]
gi|429390834|gb|EKZ27242.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-03943]
gi|429401240|gb|EKZ37548.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
11-04080]
gi|429402471|gb|EKZ38762.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429404803|gb|EKZ41073.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429413699|gb|EKZ49884.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429415738|gb|EKZ51897.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429424064|gb|EKZ60170.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429427595|gb|EKZ63676.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429432549|gb|EKZ68588.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429439846|gb|EKZ75827.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429444013|gb|EKZ79960.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429448501|gb|EKZ84414.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429454250|gb|EKZ90113.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429458629|gb|EKZ94452.1| tRNA modification GTPase mnmE [Escherichia coli O104:H4 str.
Ec11-9941]
gi|430895893|gb|ELC18146.1| tRNA modification GTPase mnmE [Escherichia coli KTE12]
gi|431060003|gb|ELD69345.1| tRNA modification GTPase mnmE [Escherichia coli KTE233]
gi|431307142|gb|ELF95443.1| tRNA modification GTPase mnmE [Escherichia coli KTE48]
gi|431359914|gb|ELG46539.1| tRNA modification GTPase mnmE [Escherichia coli KTE101]
gi|431381727|gb|ELG66079.1| tRNA modification GTPase mnmE [Escherichia coli KTE136]
gi|441655441|emb|CCP99922.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
Length = 454
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|34499858|ref|NP_904073.1| tRNA modification GTPase TrmE [Chromobacterium violaceum ATCC
12472]
gi|46577367|sp|Q7NPT9.1|MNME_CHRVO RecName: Full=tRNA modification GTPase MnmE
gi|34105708|gb|AAQ62062.1| thiophene and furan oxidation protein ThdF [Chromobacterium
violaceum ATCC 12472]
Length = 450
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 127/348 (36%), Positives = 174/348 (50%), Gaps = 72/348 (20%)
Query: 91 LCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDE 150
+C G+ GV VIRVSG D L ++++ K KPRYA+ + D + LD
Sbjct: 10 ICAVATAPGRGGVGVIRVSGKDLLPFAQAISG---GKTPKPRYATYTDFFDAHGQA-LDN 65
Query: 151 GLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKL 210
GL L+FP PNSFTGED E Q HG V+ +L +L G R AEPGEF+KRAF N+KL
Sbjct: 66 GLLLFFPGPNSFTGEDVIELQGHGGPVVLKMLLARCVEL-GARLAEPGEFTKRAFLNDKL 124
Query: 211 DLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEI 270
DL Q E++ DLI A +E + AL +KG +
Sbjct: 125 DLAQAESVADLIDASSETAARSALKSLKGAFSR--------------------------- 157
Query: 271 IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI-- 328
++HG +++ I L VEA +DF E+EI
Sbjct: 158 --------------EVHGLVDELINLR-----------------MLVEATLDFPEEEIDF 186
Query: 329 -IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQ 387
+ + + +R QL G ++ + K G +R G+ V+VG+PNVGKSSLMN L
Sbjct: 187 LKQADAIGRLRRLRAQLVG-----VQATAKQGAILREGMHVVLVGQPNVGKSSLMNALAG 241
Query: 388 KQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I+IVT I GTTRD + + + I G PV ++DTAGLR T D++E G
Sbjct: 242 DDIAIVTDIAGTTRDTVREEIVIDGVPVHIIDTAGLR-DTDDVVEKIG 288
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TI A+++ G+ GV VIRVSG D L ++++ K PKPRYA+ + D + LD
Sbjct: 9 TICAVATAPGRGGVGVIRVSGKDLLPFAQAISG---GKTPKPRYATYTDFFDAHGQ-ALD 64
Query: 89 EGLCLWFPR-HGKCGVSVIRVSG 110
GL L+FP + G VI + G
Sbjct: 65 NGLLLFFPGPNSFTGEDVIELQG 87
>gi|205422319|sp|Q2K2S0.2|MNME_RHIEC RecName: Full=tRNA modification GTPase MnmE
Length = 437
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 129/335 (38%), Positives = 173/335 (51%), Gaps = 65/335 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GVS++R+SGP T N L +A V R AS R I +E + D GL L+FP P+
Sbjct: 16 SGVSIVRISGPLTRNILIRLAG----SVPADRSASYRTIRTRNNEPI-DNGLVLFFPGPH 70
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGED E Q+HGS AV+ A+ L +PG+R A GEFS+RAF N KLDL + E L D
Sbjct: 71 SFTGEDVAELQIHGSKAVLAALFFELGDIPGVRMANEGEFSRRAFENGKLDLVEVEGLAD 130
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI AETE+Q R+L +E A
Sbjct: 131 LISAETEMQ-------------------RRLAVEQSAG---------------------- 149
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
V ++ S K + +R R A +EA +DF +++ + ++ + V +
Sbjct: 150 -GVSAIYDSWAKRL-------IRAR---------ALIEAELDFPDEDDVPGSVSDMVWTD 192
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
+ +L I H++ S G IR G K VI G PN GKSSL+N L ++ ++IVT I GTT
Sbjct: 193 MKRLRDDIGLHLK-SASAGEIIRDGFKVVIAGAPNAGKSSLLNALARRDVAIVTDIAGTT 251
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
RDV++ LDI GY V L DTAGLR D +E EG
Sbjct: 252 RDVLQVDLDIDGYLVKLYDTAGLR-QADDRVEMEG 285
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ +TI+ALSSG GVS++R+SGP T N L +A VP R AS R I ++
Sbjct: 2 LSDTIYALSSGAPPSGVSIVRISGPLTRNILIRLAG----SVPADRSASYRTIRTRNNEP 57
Query: 86 VLDEGLCLWFP 96
+ D GL L+FP
Sbjct: 58 I-DNGLVLFFP 67
>gi|161170269|gb|ABX59239.1| predicted GTPase [uncultured marine bacterium EB000_55B11]
gi|297183798|gb|ADI19921.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
Length = 432
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 175/336 (52%), Gaps = 73/336 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYAS----LRNIVDPVSEVVLDEGLCL 154
G+ GVSVIR+SG +++ ++ +K+ + +S LR I D + V+DE L L
Sbjct: 13 GRAGVSVIRISGDNSITSV--------EKILRKNLSSNNKCLRKIYDS-NNSVIDEVLIL 63
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
F K SFTG++ E HGSIAV++ IL L+ L R AEPGEF+++A N LDL Q
Sbjct: 64 TFKKSASFTGDETVEIHCHGSIAVVSHILRTLSSLENFRIAEPGEFTRKALENGNLDLIQ 123
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
E L DLI++ETE QR+ A+ M G L + WR+ ++ +++ +EA IDF++++I D
Sbjct: 124 VEGLADLIESETEAQRRLAVRSMDGALSKKVQIWRKDLIRAVSLIEATIDFADEDIPTD- 182
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
V +V ++L NK + I+S
Sbjct: 183 ----VTPEV----------LDLINKTQIEIKS---------------------------- 200
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
++ GS RIR G + IVG PN+GKS+L+N L + +I +
Sbjct: 201 --------EIDGSFAAE---------RIREGFEVAIVGPPNIGKSTLLNALAGRDAAITS 243
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
+ GTTRDVIE +DI G+ V LLDTAGLR TT +
Sbjct: 244 DVAGTTRDVIEVKMDINGFAVTLLDTAGLRETTDKV 279
Score = 41.2 bits (95), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 13/76 (17%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYAS----LRNIVDP 81
+ + IFAL+S G+ GVSVIR+SG +++ ++ +K+ + +S LR I D
Sbjct: 1 MNDIIFALTSAKGRAGVSVIRISGDNSITSV--------EKILRKNLSSNNKCLRKIYDS 52
Query: 82 VSKVVLDEGLCLWFPR 97
+ V+DE L L F +
Sbjct: 53 -NNSVIDEVLILTFKK 67
>gi|260771040|ref|ZP_05879968.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio furnissii CIP
102972]
gi|375129463|ref|YP_004991559.1| tRNA modification GTPase trmE [Vibrio furnissii NCTC 11218]
gi|260613929|gb|EEX39120.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio furnissii CIP
102972]
gi|315178633|gb|ADT85547.1| tRNA modification GTPase trmE [Vibrio furnissii NCTC 11218]
Length = 453
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP +A + KPRYA S V LD+G+ L+FP
Sbjct: 14 GRGGVGIIRVSGPKA----TEVALAVTGRTLKPRYAEYLPF-KTESGVELDQGIALFFPN 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ ++ + +PG+RPA PGEFS+RAF N+K+DLTQ EA+
Sbjct: 69 PHSFTGEDVLELQGHGGPVVMDMLIKRILMIPGVRPARPGEFSERAFLNDKMDLTQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G + + ++ VEA IDF E+EI D + +
Sbjct: 129 ADLIDASSEEAAKSALKSLQGQFSKRIHTLVESLIHLRIYVEAAIDFPEEEI--DFLADG 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
++ ++++I DN LN VR
Sbjct: 187 ------------------------KVSGDLQAII------------------DN-LNAVR 203
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ Q G +R G+K VI G PN GKSSL+N L K+ +IVT I G
Sbjct: 204 QEANQ---------------GAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTDIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 249 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 280
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP +A + KPRYA S V L
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPKA----TEVALAVTGRTLKPRYAEYLPF-KTESGVEL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLNAL-KSMACYPDQKVSKPRYASLRNIVD 141
D+G+ L+FP H G V+ + GP ++ L K + P + ++P S R ++
Sbjct: 59 DQGIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILMIPGVRPARPGEFSERAFLN 117
>gi|398390978|ref|XP_003848949.1| hypothetical protein MYCGRDRAFT_48437 [Zymoseptoria tritici IPO323]
gi|339468825|gb|EGP83925.1| hypothetical protein MYCGRDRAFT_48437 [Zymoseptoria tritici IPO323]
Length = 656
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 117/336 (34%), Positives = 177/336 (52%), Gaps = 68/336 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVS----EVVLD-EGLC 153
G+ +++IR SGP L+ A P++ + +PR+A +R + DP + +LD L
Sbjct: 114 GRSAIAIIRTSGP--LSTHIYHALCPNKPLPQPRHAVVRTLYDPSQSQSRDTILDPSALV 171
Query: 154 LWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLP-----GLRPAEPGEFSKRAFFNN 208
L+FP PN+FTGED E VHG AV+ A+L A++++P +R A+PGEF+ RAF N+
Sbjct: 172 LYFPAPNTFTGEDILEMHVHGGPAVVKAVLSAISRIPIHPSGRIRYAQPGEFTLRAFHNS 231
Query: 209 KLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSED 268
+L LTQ EAL D + AETE QR+ ++ L LY WRQL+L + +EA IDFSED
Sbjct: 232 RLTLTQIEALSDTLAAETEQQRRLSIRGSTSTLPALYETWRQLLLSARGELEALIDFSED 291
Query: 269 EIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI 328
+ +++ V+L SI ++ +I L V
Sbjct: 292 QHFDES--------TVELCASISAQ--------------VRHLILLLKV----------- 318
Query: 329 IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQK 388
+I N V+ ++ +R+GI +G PN GKSSL+N + +
Sbjct: 319 ---HIQNAVKGEL--------------------LRNGISVAFLGVPNAGKSSLLNCIVGR 355
Query: 389 QISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424
+ +IV GTTRDV++ +D+GG+ V DTAG+R
Sbjct: 356 EAAIVAEEAGTTRDVVDVSVDLGGWLVRFGDTAGVR 391
>gi|283787594|ref|YP_003367459.1| tRNA modification GTPase [Citrobacter rodentium ICC168]
gi|282951048|emb|CBG90726.1| probable tRNA modification GTPase [Citrobacter rodentium ICC168]
Length = 454
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 171/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ +PRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAEAVLGKLPRPRYADYLPFKD-ADGAALDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NEVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 281
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+P+PRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAEAVLGKLPRPRYADYLPFKD-ADGAAL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118
>gi|300947531|ref|ZP_07161709.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 116-1]
gi|300452880|gb|EFK16500.1| tRNA modification GTPase TrmE [Escherichia coli MS 116-1]
Length = 460
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 21 GRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 75
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 76 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 136 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 191
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 192 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 210
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 211 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 255
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 256 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 287
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D VL
Sbjct: 11 DTIVAQATPPGRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVL 65
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 66 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 124
>gi|429084015|ref|ZP_19147034.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
condimenti 1330]
gi|426546993|emb|CCJ73075.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
condimenti 1330]
Length = 454
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 171/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + ++ K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRVSGQQARDVAHAVLG----KLPKPRYADYLPFKD-ADGTALDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NDVIGD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q GS+ +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ--GSL-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++RVSG + ++ K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRVSGQQARDVAHAVLG----KLPKPRYADYLPFKD-ADGTAL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118
>gi|417599147|ref|ZP_12249771.1| tRNA modification GTPase TrmE [Escherichia coli 3030-1]
gi|345348643|gb|EGW80936.1| tRNA modification GTPase TrmE [Escherichia coli 3030-1]
Length = 454
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVETLTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|300956287|ref|ZP_07168590.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 175-1]
gi|300316885|gb|EFJ66669.1| tRNA modification GTPase TrmE [Escherichia coli MS 175-1]
Length = 462
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 23 GRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 78 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 137
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 138 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 193
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 194 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 212
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 213 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 257
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 258 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 289
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D VL
Sbjct: 13 DTIVAQATPPGRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVL 67
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 68 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 126
>gi|114769773|ref|ZP_01447383.1| tRNA modification GTPase [Rhodobacterales bacterium HTCC2255]
gi|114549478|gb|EAU52360.1| tRNA modification GTPase [alpha proteobacterium HTCC2255]
Length = 432
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 175/336 (52%), Gaps = 73/336 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYAS----LRNIVDPVSEVVLDEGLCL 154
G+ GVSVIR+SG +++ ++ +K+ + +S LR I D + V+DE L L
Sbjct: 13 GRAGVSVIRISGDNSITSV--------EKILRKNLSSNNKCLRKIYDS-NNSVIDEVLIL 63
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
F K SFTG++ E HGSIAV++ IL L+ L R AEPGEF+++A N LDL Q
Sbjct: 64 TFKKSASFTGDETVEIHCHGSIAVVSHILRTLSSLENFRIAEPGEFTRKALENGNLDLIQ 123
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
E L DLI++ETE QR+ A+ M G L + WR+ ++ +++ +EA IDF++++I D
Sbjct: 124 VEGLADLIESETEAQRRLAVRSMDGALSKKVQIWRKDLIRAVSLIEATIDFADEDIPTD- 182
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
V +V ++L NK + I+S
Sbjct: 183 ----VTPEV----------LDLINKTQIEIKS---------------------------- 200
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
++ GS RIR G + IVG PN+GKS+L+N L + +I +
Sbjct: 201 --------EIDGSFAAE---------RIREGFEVAIVGPPNIGKSTLLNALAGRDAAITS 243
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
+ GTTRDVIE +DI G+ V LLDTAGLR TT +
Sbjct: 244 DVAGTTRDVIEVKMDINGFAVTLLDTAGLRETTDKV 279
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 13/76 (17%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYAS----LRNIVDP 81
+ + IFAL+S G+ GVSVIR+SG +++ ++ +K+ + +S LR I D
Sbjct: 1 MNDIIFALASAKGRAGVSVIRISGDNSITSV--------EKILRKNLSSNNKCLRKIYDS 52
Query: 82 VSKVVLDEGLCLWFPR 97
+ V+DE L L F +
Sbjct: 53 -NNSVIDEVLILTFKK 67
>gi|422375951|ref|ZP_16456209.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 60-1]
gi|324012741|gb|EGB81960.1| tRNA modification GTPase TrmE [Escherichia coli MS 60-1]
Length = 481
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 171/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 42 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 96
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 97 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 156
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 157 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 212
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + + +I D L+ VR
Sbjct: 213 --------DGKIEAQL-------------------------------NNVIAD--LDAVR 231
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 232 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 276
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 277 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 308
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 32 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVL 86
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 87 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 145
>gi|301047527|ref|ZP_07194602.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 185-1]
gi|422364426|ref|ZP_16444944.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 153-1]
gi|300300576|gb|EFJ56961.1| tRNA modification GTPase TrmE [Escherichia coli MS 185-1]
gi|315292850|gb|EFU52202.1| tRNA modification GTPase TrmE [Escherichia coli MS 153-1]
Length = 477
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 171/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 38 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 92
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 93 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 152
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 153 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 209
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + + +I D L+ VR
Sbjct: 210 ---------GKIEAQL-------------------------------NNVIAD--LDAVR 227
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 228 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 272
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 273 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 304
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 28 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVL 82
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 83 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 141
>gi|432491547|ref|ZP_19733406.1| tRNA modification GTPase mnmE [Escherichia coli KTE213]
gi|432720872|ref|ZP_19955829.1| tRNA modification GTPase mnmE [Escherichia coli KTE9]
gi|432794982|ref|ZP_20029054.1| tRNA modification GTPase mnmE [Escherichia coli KTE78]
gi|432796493|ref|ZP_20030527.1| tRNA modification GTPase mnmE [Escherichia coli KTE79]
gi|432841572|ref|ZP_20075027.1| tRNA modification GTPase mnmE [Escherichia coli KTE140]
gi|433205466|ref|ZP_20389209.1| tRNA modification GTPase mnmE [Escherichia coli KTE95]
gi|431017257|gb|ELD30769.1| tRNA modification GTPase mnmE [Escherichia coli KTE213]
gi|431258492|gb|ELF51256.1| tRNA modification GTPase mnmE [Escherichia coli KTE9]
gi|431335572|gb|ELG22703.1| tRNA modification GTPase mnmE [Escherichia coli KTE78]
gi|431348031|gb|ELG34904.1| tRNA modification GTPase mnmE [Escherichia coli KTE79]
gi|431385805|gb|ELG69791.1| tRNA modification GTPase mnmE [Escherichia coli KTE140]
gi|431715927|gb|ELJ80070.1| tRNA modification GTPase mnmE [Escherichia coli KTE95]
Length = 454
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|301028501|ref|ZP_07191740.1| tRNA modification GTPase TrmE [Escherichia coli MS 196-1]
gi|299878448|gb|EFI86659.1| tRNA modification GTPase TrmE [Escherichia coli MS 196-1]
Length = 454
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPMILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPMILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|82779236|ref|YP_405585.1| tRNA modification GTPase TrmE [Shigella dysenteriae Sd197]
gi|293417178|ref|ZP_06659805.1| tRNA modification GTPase TrmE [Escherichia coli B185]
gi|309784244|ref|ZP_07678883.1| tRNA modification GTPase TrmE [Shigella dysenteriae 1617]
gi|422836033|ref|ZP_16884083.1| tRNA modification GTPase mnmE [Escherichia coli E101]
gi|432451979|ref|ZP_19694233.1| tRNA modification GTPase mnmE [Escherichia coli KTE193]
gi|432950441|ref|ZP_20144713.1| tRNA modification GTPase mnmE [Escherichia coli KTE196]
gi|433035640|ref|ZP_20223328.1| tRNA modification GTPase mnmE [Escherichia coli KTE112]
gi|433045252|ref|ZP_20232725.1| tRNA modification GTPase mnmE [Escherichia coli KTE117]
gi|123561062|sp|Q329B1.1|MNME_SHIDS RecName: Full=tRNA modification GTPase MnmE
gi|81243384|gb|ABB64094.1| GTP-binding protein [Shigella dysenteriae Sd197]
gi|291431209|gb|EFF04202.1| tRNA modification GTPase TrmE [Escherichia coli B185]
gi|308927751|gb|EFP73219.1| tRNA modification GTPase TrmE [Shigella dysenteriae 1617]
gi|371610173|gb|EHN98704.1| tRNA modification GTPase mnmE [Escherichia coli E101]
gi|430977129|gb|ELC93980.1| tRNA modification GTPase mnmE [Escherichia coli KTE193]
gi|431452506|gb|ELH32950.1| tRNA modification GTPase mnmE [Escherichia coli KTE196]
gi|431546116|gb|ELI20758.1| tRNA modification GTPase mnmE [Escherichia coli KTE112]
gi|431552454|gb|ELI26414.1| tRNA modification GTPase mnmE [Escherichia coli KTE117]
Length = 454
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|320589254|gb|EFX01716.1| mitochondrial GTPase [Grosmannia clavigera kw1407]
Length = 591
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 125/349 (35%), Positives = 182/349 (52%), Gaps = 70/349 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDP-VSEVVLD-EGLCLWF 156
GK G++VIRVSGP L +++ C P KPRYA++R + P S+ VLD + + L+F
Sbjct: 74 GKAGIAVIRVSGPACLQVRRAL-C-PTAAQLKPRYAAVRTLYRPQASDDVLDTDAVVLYF 131
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGAL--TKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
P P + TGED E VHG A + A+L A+ T +R AEPGEF++RAFF++++DL +
Sbjct: 132 PGPKTVTGEDVLELHVHGGAATVRAVLSAIPATSQTAIRYAEPGEFTRRAFFHDRVDLAE 191
Query: 215 TEALGDLIQAETELQRQKALHQMKG-NLKQLYSEWRQLILESLASVEAYIDFSEDEIIED 273
EALG + AETE QR+ A+ G L Y WR+ +L + A +EA IDF+ED+ ++
Sbjct: 192 VEALGAALDAETEQQRRAAVRGSGGRQLGATYDGWRRELLAARAEIEALIDFAEDQHFDE 251
Query: 274 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNI 333
+ + L G + H +R+ +++ LA+ EA D
Sbjct: 252 SPTD--------LLGGVSGH----------VRTLLRA---LATHEAAAD----------- 279
Query: 334 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIV 393
GS+ + G+RI +VG N GKSS+MN + + SIV
Sbjct: 280 -----------RGSLLRQ-------GIRI------ALVGPANAGKSSMMNLVAGRAASIV 315
Query: 394 TSIPGTTRDVIEKHLDIGGYPVILLDTAGLR-------TTTSDIIETEG 435
+ GTTRDV++ LD+ GY DTAG R T+ + IE EG
Sbjct: 316 SPEAGTTRDVVQASLDLRGYLCTFADTAGFRNIRDVRDTSAASTIEAEG 364
>gi|327295863|ref|XP_003232626.1| mitochondrial GTPase [Trichophyton rubrum CBS 118892]
gi|326464937|gb|EGD90390.1| mitochondrial GTPase [Trichophyton rubrum CBS 118892]
Length = 594
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 180/346 (52%), Gaps = 77/346 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEV----VLDEG-LC 153
G+ +++IR+SGP + K++ C P++K+ KPR+A+LR I +P V VLD G L
Sbjct: 55 GRAAIAIIRISGPYCIPIYKAL-C-PNRKLPKPRFAALRTIYEPGKPVSADNVLDSGALV 112
Query: 154 LWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG--------LRPAEPGEFSKRAF 205
FP PN+ TGED E VHG AVI +ILGA++K +R AEPGEF++RAF
Sbjct: 113 FHFPAPNTVTGEDVLELHVHGGPAVIKSILGAISKCASPVDAPSASIRYAEPGEFTRRAF 172
Query: 206 FNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDF 265
N++LDL Q EALG+ + A+TE QR+ A+ L Y +W
Sbjct: 173 LNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDILSTRYEQW----------------- 215
Query: 266 SEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSE 325
R Q++ G +E A IDFSE
Sbjct: 216 --------------RKQLLYARGELE---------------------------ALIDFSE 234
Query: 326 DEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLM 382
D+ + D+ +++V QV L I HI+ ++K G +RSGIK ++G PN GKSSL+
Sbjct: 235 DQHFDESVDDFISSVTGQVDSLLHQINLHIKNASK-GELLRSGIKVALLGAPNAGKSSLL 293
Query: 383 NFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428
N + + +IV+S GTTRD+++ +D+GG+ D AGLR+ S
Sbjct: 294 NQIVGRDAAIVSSEAGTTRDIVDVGIDLGGWLCKFGDMAGLRSKLS 339
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 136/290 (46%), Gaps = 64/290 (22%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV-- 85
TI+ALS+ G+ +++IR+SGP + K++ C P++K+PKPR+A+LR I +P V
Sbjct: 45 TTIYALSTAPGRAAIAIIRISGPYCIPIYKAL-C-PNRKLPKPRFAALRTIYEPGKPVSA 102
Query: 86 --VLDEG-LCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDP 142
VLD G L FP V+G D L + + V K ++ P
Sbjct: 103 DNVLDSGALVFHFPAPNT-------VTGEDVLE----LHVHGGPAVIKSILGAISKCASP 151
Query: 143 VSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSK 202
V + + +P FT +
Sbjct: 152 VDA----PSASIRYAEPGEFT--------------------------------------R 169
Query: 203 RAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAY 262
RAF N++LDL Q EALG+ + A+TE QR+ A+ L Y +WR+ +L + +EA
Sbjct: 170 RAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDILSTRYEQWRKQLLYARGELEAL 229
Query: 263 IDFSEDEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK 309
IDFSED+ + D+ +++V QV L I HI+ ++K G +RSGIK
Sbjct: 230 IDFSEDQHFDESVDDFISSVTGQVDSLLHQINLHIKNASK-GELLRSGIK 278
>gi|227354815|ref|ZP_03839232.1| tRNA modification GTPase [Proteus mirabilis ATCC 29906]
gi|425070466|ref|ZP_18473579.1| tRNA modification GTPase mnmE [Proteus mirabilis WGLW6]
gi|425070780|ref|ZP_18473886.1| tRNA modification GTPase mnmE [Proteus mirabilis WGLW4]
gi|227165133|gb|EEI49964.1| tRNA modification GTPase [Proteus mirabilis ATCC 29906]
gi|404594763|gb|EKA95319.1| tRNA modification GTPase mnmE [Proteus mirabilis WGLW6]
gi|404599605|gb|EKB00058.1| tRNA modification GTPase mnmE [Proteus mirabilis WGLW4]
Length = 454
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 119/335 (35%), Positives = 167/335 (49%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYAS---LRNIVDPVSEVVLDEGLCLW 155
G+ GV ++RVSGP +++ KV KPRYA RN VLD+G+ L+
Sbjct: 15 GRGGVGILRVSGPKAAVVAQTILG----KVPKPRYADYLPFRN----EDNSVLDQGIALF 66
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
FP PNSFTGED E Q HG +++ +L + ++PG+R A+PGEFS+RAF N+KLDL Q
Sbjct: 67 FPNPNSFTGEDVLELQGHGGPIILDLLLKRILQIPGIRIAKPGEFSERAFLNDKLDLAQA 126
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
EA+ DLI A +E
Sbjct: 127 EAIADLIDASSE------------------------------------------------ 138
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILN 335
RS + L G+ HI + +R +++ I E IDF D +IE LN
Sbjct: 139 -QAARSAINSLQGAFSSHINEMVESLTNLRIYVEAAIDFPDEE--IDFLSDGVIEGK-LN 194
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
TV SQ+ + + G +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 195 TVISQL--------DDVRAQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 246
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 247 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYAS---LRNIVDPVSK 84
+TI A ++ G+ GV ++RVSGP +++ KVPKPRYA RN
Sbjct: 5 DTIVAQATPPGRGGVGILRVSGPKAAVVAQTILG----KVPKPRYADYLPFRN----EDN 56
Query: 85 VVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNI 139
VLD+G+ L+FP + G V+ + GP L+ LK + P +++KP S R
Sbjct: 57 SVLDQGIALFFPNPNSFTGEDVLELQGHGGPIILDLLLKRILQIPGIRIAKPGEFSERAF 116
Query: 140 VD 141
++
Sbjct: 117 LN 118
>gi|190171252|gb|ACE63696.1| ThdF [Leclercia adecarboxylata ATCC 23216]
Length = 439
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 168/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISGQKAREVAEAVLG----KLPKPRYADYLPFKD-TDGTALDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 178
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + + ++ D L+ VR
Sbjct: 179 ---------GKIEAQL-------------------------------NAVMSD--LDAVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 273
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++R+SG +++ K+PKPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISGQKAREVAEAVLG----KLPKPRYADYLPFKD-TDGTALDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 110
>gi|26250447|ref|NP_756487.1| tRNA modification GTPase TrmE [Escherichia coli CFT073]
gi|91213231|ref|YP_543217.1| tRNA modification GTPase TrmE [Escherichia coli UTI89]
gi|110644049|ref|YP_671779.1| tRNA modification GTPase TrmE [Escherichia coli 536]
gi|117625981|ref|YP_859304.1| tRNA modification GTPase TrmE [Escherichia coli APEC O1]
gi|191170442|ref|ZP_03031995.1| tRNA modification GTPase TrmE [Escherichia coli F11]
gi|218560782|ref|YP_002393695.1| tRNA modification GTPase TrmE [Escherichia coli S88]
gi|227883929|ref|ZP_04001734.1| tRNA modification GTPase TrmE [Escherichia coli 83972]
gi|237703508|ref|ZP_04533989.1| tRNA modification GTPase mnmE [Escherichia sp. 3_2_53FAA]
gi|306815940|ref|ZP_07450078.1| tRNA modification GTPase TrmE [Escherichia coli NC101]
gi|331660050|ref|ZP_08360988.1| tRNA modification GTPase TrmE [Escherichia coli TA206]
gi|386601744|ref|YP_006103250.1| tRNA modification GTPase TrmE [Escherichia coli IHE3034]
gi|386606299|ref|YP_006112599.1| tRNA modification GTPase TrmE [Escherichia coli UM146]
gi|386631651|ref|YP_006151371.1| tRNA modification GTPase TrmE [Escherichia coli str. 'clone D i2']
gi|386636571|ref|YP_006156290.1| tRNA modification GTPase TrmE [Escherichia coli str. 'clone D i14']
gi|386641355|ref|YP_006108153.1| tRNA modification GTPase TrmE [Escherichia coli ABU 83972]
gi|417087604|ref|ZP_11954532.1| tRNA modification GTPase TrmE [Escherichia coli cloneA_i1]
gi|419911483|ref|ZP_14429965.1| tRNA modification GTPase TrmE [Escherichia coli KD1]
gi|419943751|ref|ZP_14460264.1| tRNA modification GTPase TrmE [Escherichia coli HM605]
gi|422751566|ref|ZP_16805475.1| tRNA modification GTPase TrmE [Escherichia coli H252]
gi|422756593|ref|ZP_16810415.1| tRNA modification GTPase TrmE [Escherichia coli H263]
gi|422841754|ref|ZP_16889723.1| tRNA modification GTPase mnmE [Escherichia coli H397]
gi|432360173|ref|ZP_19603385.1| tRNA modification GTPase mnmE [Escherichia coli KTE4]
gi|432364973|ref|ZP_19608127.1| tRNA modification GTPase mnmE [Escherichia coli KTE5]
gi|432383616|ref|ZP_19626541.1| tRNA modification GTPase mnmE [Escherichia coli KTE15]
gi|432389524|ref|ZP_19632403.1| tRNA modification GTPase mnmE [Escherichia coli KTE16]
gi|432408789|ref|ZP_19651491.1| tRNA modification GTPase mnmE [Escherichia coli KTE28]
gi|432413984|ref|ZP_19656637.1| tRNA modification GTPase mnmE [Escherichia coli KTE39]
gi|432433944|ref|ZP_19676367.1| tRNA modification GTPase mnmE [Escherichia coli KTE187]
gi|432438676|ref|ZP_19681053.1| tRNA modification GTPase mnmE [Escherichia coli KTE188]
gi|432443251|ref|ZP_19685584.1| tRNA modification GTPase mnmE [Escherichia coli KTE189]
gi|432448396|ref|ZP_19690691.1| tRNA modification GTPase mnmE [Escherichia coli KTE191]
gi|432458862|ref|ZP_19701036.1| tRNA modification GTPase mnmE [Escherichia coli KTE201]
gi|432473072|ref|ZP_19715108.1| tRNA modification GTPase mnmE [Escherichia coli KTE206]
gi|432497856|ref|ZP_19739647.1| tRNA modification GTPase mnmE [Escherichia coli KTE214]
gi|432506612|ref|ZP_19748330.1| tRNA modification GTPase mnmE [Escherichia coli KTE220]
gi|432516108|ref|ZP_19753323.1| tRNA modification GTPase mnmE [Escherichia coli KTE224]
gi|432526193|ref|ZP_19763305.1| tRNA modification GTPase mnmE [Escherichia coli KTE230]
gi|432555800|ref|ZP_19792517.1| tRNA modification GTPase mnmE [Escherichia coli KTE47]
gi|432570994|ref|ZP_19807499.1| tRNA modification GTPase mnmE [Escherichia coli KTE53]
gi|432575961|ref|ZP_19812430.1| tRNA modification GTPase mnmE [Escherichia coli KTE55]
gi|432590172|ref|ZP_19826523.1| tRNA modification GTPase mnmE [Escherichia coli KTE58]
gi|432594933|ref|ZP_19831244.1| tRNA modification GTPase mnmE [Escherichia coli KTE60]
gi|432599976|ref|ZP_19836245.1| tRNA modification GTPase mnmE [Escherichia coli KTE62]
gi|432605158|ref|ZP_19841367.1| tRNA modification GTPase mnmE [Escherichia coli KTE67]
gi|432613722|ref|ZP_19849879.1| tRNA modification GTPase mnmE [Escherichia coli KTE72]
gi|432648390|ref|ZP_19884175.1| tRNA modification GTPase mnmE [Escherichia coli KTE86]
gi|432653375|ref|ZP_19889111.1| tRNA modification GTPase mnmE [Escherichia coli KTE87]
gi|432657955|ref|ZP_19893651.1| tRNA modification GTPase mnmE [Escherichia coli KTE93]
gi|432701234|ref|ZP_19936378.1| tRNA modification GTPase mnmE [Escherichia coli KTE169]
gi|432715579|ref|ZP_19950603.1| tRNA modification GTPase mnmE [Escherichia coli KTE8]
gi|432747694|ref|ZP_19982355.1| tRNA modification GTPase mnmE [Escherichia coli KTE43]
gi|432756676|ref|ZP_19991219.1| tRNA modification GTPase mnmE [Escherichia coli KTE22]
gi|432780753|ref|ZP_20014972.1| tRNA modification GTPase mnmE [Escherichia coli KTE59]
gi|432785706|ref|ZP_20019882.1| tRNA modification GTPase mnmE [Escherichia coli KTE63]
gi|432789745|ref|ZP_20023871.1| tRNA modification GTPase mnmE [Escherichia coli KTE65]
gi|432803954|ref|ZP_20037904.1| tRNA modification GTPase mnmE [Escherichia coli KTE84]
gi|432823181|ref|ZP_20056868.1| tRNA modification GTPase mnmE [Escherichia coli KTE118]
gi|432824641|ref|ZP_20058304.1| tRNA modification GTPase mnmE [Escherichia coli KTE123]
gi|432846849|ref|ZP_20079452.1| tRNA modification GTPase mnmE [Escherichia coli KTE141]
gi|432907489|ref|ZP_20115926.1| tRNA modification GTPase mnmE [Escherichia coli KTE194]
gi|432940526|ref|ZP_20138440.1| tRNA modification GTPase mnmE [Escherichia coli KTE183]
gi|432973992|ref|ZP_20162835.1| tRNA modification GTPase mnmE [Escherichia coli KTE207]
gi|432975944|ref|ZP_20164776.1| tRNA modification GTPase mnmE [Escherichia coli KTE209]
gi|432987565|ref|ZP_20176276.1| tRNA modification GTPase mnmE [Escherichia coli KTE215]
gi|432997503|ref|ZP_20186083.1| tRNA modification GTPase mnmE [Escherichia coli KTE218]
gi|433002099|ref|ZP_20190616.1| tRNA modification GTPase mnmE [Escherichia coli KTE223]
gi|433002619|ref|ZP_20191128.1| tRNA modification GTPase mnmE [Escherichia coli KTE227]
gi|433009921|ref|ZP_20198332.1| tRNA modification GTPase mnmE [Escherichia coli KTE229]
gi|433016039|ref|ZP_20204366.1| tRNA modification GTPase mnmE [Escherichia coli KTE104]
gi|433025629|ref|ZP_20213596.1| tRNA modification GTPase mnmE [Escherichia coli KTE106]
gi|433040735|ref|ZP_20228321.1| tRNA modification GTPase mnmE [Escherichia coli KTE113]
gi|433060244|ref|ZP_20247275.1| tRNA modification GTPase mnmE [Escherichia coli KTE124]
gi|433079919|ref|ZP_20266435.1| tRNA modification GTPase mnmE [Escherichia coli KTE131]
gi|433084646|ref|ZP_20271091.1| tRNA modification GTPase mnmE [Escherichia coli KTE133]
gi|433089447|ref|ZP_20275805.1| tRNA modification GTPase mnmE [Escherichia coli KTE137]
gi|433103317|ref|ZP_20289386.1| tRNA modification GTPase mnmE [Escherichia coli KTE145]
gi|433117651|ref|ZP_20303430.1| tRNA modification GTPase mnmE [Escherichia coli KTE153]
gi|433127353|ref|ZP_20312894.1| tRNA modification GTPase mnmE [Escherichia coli KTE160]
gi|433141427|ref|ZP_20326664.1| tRNA modification GTPase mnmE [Escherichia coli KTE167]
gi|433146356|ref|ZP_20331486.1| tRNA modification GTPase mnmE [Escherichia coli KTE168]
gi|433151379|ref|ZP_20336375.1| tRNA modification GTPase mnmE [Escherichia coli KTE174]
gi|433155908|ref|ZP_20340834.1| tRNA modification GTPase mnmE [Escherichia coli KTE176]
gi|433165737|ref|ZP_20350462.1| tRNA modification GTPase mnmE [Escherichia coli KTE179]
gi|433170732|ref|ZP_20355348.1| tRNA modification GTPase mnmE [Escherichia coli KTE180]
gi|433190525|ref|ZP_20374611.1| tRNA modification GTPase mnmE [Escherichia coli KTE88]
gi|433200485|ref|ZP_20384366.1| tRNA modification GTPase mnmE [Escherichia coli KTE94]
gi|433209869|ref|ZP_20393532.1| tRNA modification GTPase mnmE [Escherichia coli KTE97]
gi|433214748|ref|ZP_20398322.1| tRNA modification GTPase mnmE [Escherichia coli KTE99]
gi|433321672|ref|ZP_20399230.1| tRNA modification GTPase TrmE [Escherichia coli J96]
gi|442605758|ref|ZP_21020574.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
Nissle 1917]
gi|32171844|sp|Q8FBV3.1|MNME_ECOL6 RecName: Full=tRNA modification GTPase MnmE
gi|122421834|sp|Q1R4M8.1|MNME_ECOUT RecName: Full=tRNA modification GTPase MnmE
gi|123048671|sp|Q0TB01.1|MNME_ECOL5 RecName: Full=tRNA modification GTPase MnmE
gi|166200477|sp|A1AHP0.1|MNME_ECOK1 RecName: Full=tRNA modification GTPase MnmE
gi|254811476|sp|B7MGC8.1|MNME_ECO45 RecName: Full=tRNA modification GTPase MnmE
gi|26110877|gb|AAN83061.1|AE016769_176 Probable tRNA modification GTPase trmE [Escherichia coli CFT073]
gi|91074805|gb|ABE09686.1| probable tRNA modification GTPase TrmE [Escherichia coli UTI89]
gi|110345641|gb|ABG71878.1| probable tRNA modification GTPase TrmE [Escherichia coli 536]
gi|115515105|gb|ABJ03180.1| tRNA modification GTPase [Escherichia coli APEC O1]
gi|190909250|gb|EDV68836.1| tRNA modification GTPase TrmE [Escherichia coli F11]
gi|218367551|emb|CAR05336.1| GTPase [Escherichia coli S88]
gi|226902772|gb|EEH89031.1| tRNA modification GTPase mnmE [Escherichia sp. 3_2_53FAA]
gi|227839207|gb|EEJ49673.1| tRNA modification GTPase TrmE [Escherichia coli 83972]
gi|294489502|gb|ADE88258.1| tRNA modification GTPase TrmE [Escherichia coli IHE3034]
gi|305850336|gb|EFM50793.1| tRNA modification GTPase TrmE [Escherichia coli NC101]
gi|307555847|gb|ADN48622.1| tRNA modification GTPase TrmE [Escherichia coli ABU 83972]
gi|307628783|gb|ADN73087.1| tRNA modification GTPase TrmE [Escherichia coli UM146]
gi|323949951|gb|EGB45835.1| tRNA modification GTPase TrmE [Escherichia coli H252]
gi|323954998|gb|EGB50776.1| tRNA modification GTPase TrmE [Escherichia coli H263]
gi|331053265|gb|EGI25298.1| tRNA modification GTPase TrmE [Escherichia coli TA206]
gi|355349704|gb|EHF98907.1| tRNA modification GTPase TrmE [Escherichia coli cloneA_i1]
gi|355422550|gb|AER86747.1| tRNA modification GTPase TrmE [Escherichia coli str. 'clone D i2']
gi|355427470|gb|AER91666.1| tRNA modification GTPase TrmE [Escherichia coli str. 'clone D i14']
gi|371604072|gb|EHN92706.1| tRNA modification GTPase mnmE [Escherichia coli H397]
gi|388393679|gb|EIL55035.1| tRNA modification GTPase TrmE [Escherichia coli KD1]
gi|388419948|gb|EIL79653.1| tRNA modification GTPase TrmE [Escherichia coli HM605]
gi|430873307|gb|ELB96882.1| tRNA modification GTPase mnmE [Escherichia coli KTE4]
gi|430883263|gb|ELC06267.1| tRNA modification GTPase mnmE [Escherichia coli KTE5]
gi|430903515|gb|ELC25252.1| tRNA modification GTPase mnmE [Escherichia coli KTE16]
gi|430904001|gb|ELC25737.1| tRNA modification GTPase mnmE [Escherichia coli KTE15]
gi|430926163|gb|ELC46751.1| tRNA modification GTPase mnmE [Escherichia coli KTE28]
gi|430933010|gb|ELC53428.1| tRNA modification GTPase mnmE [Escherichia coli KTE39]
gi|430950214|gb|ELC69602.1| tRNA modification GTPase mnmE [Escherichia coli KTE187]
gi|430959763|gb|ELC78069.1| tRNA modification GTPase mnmE [Escherichia coli KTE188]
gi|430962879|gb|ELC80725.1| tRNA modification GTPase mnmE [Escherichia coli KTE189]
gi|430970781|gb|ELC87826.1| tRNA modification GTPase mnmE [Escherichia coli KTE191]
gi|430979387|gb|ELC96172.1| tRNA modification GTPase mnmE [Escherichia coli KTE201]
gi|430995519|gb|ELD11812.1| tRNA modification GTPase mnmE [Escherichia coli KTE206]
gi|431020864|gb|ELD34199.1| tRNA modification GTPase mnmE [Escherichia coli KTE214]
gi|431035432|gb|ELD46822.1| tRNA modification GTPase mnmE [Escherichia coli KTE220]
gi|431038803|gb|ELD49699.1| tRNA modification GTPase mnmE [Escherichia coli KTE224]
gi|431047538|gb|ELD57536.1| tRNA modification GTPase mnmE [Escherichia coli KTE230]
gi|431080923|gb|ELD87709.1| tRNA modification GTPase mnmE [Escherichia coli KTE47]
gi|431097160|gb|ELE02609.1| tRNA modification GTPase mnmE [Escherichia coli KTE53]
gi|431104734|gb|ELE09107.1| tRNA modification GTPase mnmE [Escherichia coli KTE55]
gi|431117684|gb|ELE20912.1| tRNA modification GTPase mnmE [Escherichia coli KTE58]
gi|431125834|gb|ELE28231.1| tRNA modification GTPase mnmE [Escherichia coli KTE60]
gi|431127851|gb|ELE30145.1| tRNA modification GTPase mnmE [Escherichia coli KTE62]
gi|431144180|gb|ELE45887.1| tRNA modification GTPase mnmE [Escherichia coli KTE67]
gi|431146744|gb|ELE48180.1| tRNA modification GTPase mnmE [Escherichia coli KTE72]
gi|431178363|gb|ELE78276.1| tRNA modification GTPase mnmE [Escherichia coli KTE86]
gi|431186492|gb|ELE86032.1| tRNA modification GTPase mnmE [Escherichia coli KTE87]
gi|431188066|gb|ELE87565.1| tRNA modification GTPase mnmE [Escherichia coli KTE93]
gi|431240345|gb|ELF34807.1| tRNA modification GTPase mnmE [Escherichia coli KTE169]
gi|431251835|gb|ELF45841.1| tRNA modification GTPase mnmE [Escherichia coli KTE8]
gi|431289594|gb|ELF80335.1| tRNA modification GTPase mnmE [Escherichia coli KTE43]
gi|431299564|gb|ELF89135.1| tRNA modification GTPase mnmE [Escherichia coli KTE22]
gi|431324594|gb|ELG12046.1| tRNA modification GTPase mnmE [Escherichia coli KTE59]
gi|431326028|gb|ELG13391.1| tRNA modification GTPase mnmE [Escherichia coli KTE63]
gi|431334914|gb|ELG22058.1| tRNA modification GTPase mnmE [Escherichia coli KTE65]
gi|431345434|gb|ELG32355.1| tRNA modification GTPase mnmE [Escherichia coli KTE84]
gi|431365390|gb|ELG51904.1| tRNA modification GTPase mnmE [Escherichia coli KTE118]
gi|431377583|gb|ELG62709.1| tRNA modification GTPase mnmE [Escherichia coli KTE123]
gi|431392382|gb|ELG75981.1| tRNA modification GTPase mnmE [Escherichia coli KTE141]
gi|431427322|gb|ELH09363.1| tRNA modification GTPase mnmE [Escherichia coli KTE194]
gi|431460420|gb|ELH40709.1| tRNA modification GTPase mnmE [Escherichia coli KTE183]
gi|431479339|gb|ELH59082.1| tRNA modification GTPase mnmE [Escherichia coli KTE207]
gi|431485610|gb|ELH65269.1| tRNA modification GTPase mnmE [Escherichia coli KTE209]
gi|431494323|gb|ELH73912.1| tRNA modification GTPase mnmE [Escherichia coli KTE215]
gi|431502195|gb|ELH81087.1| tRNA modification GTPase mnmE [Escherichia coli KTE218]
gi|431504371|gb|ELH82997.1| tRNA modification GTPase mnmE [Escherichia coli KTE223]
gi|431521303|gb|ELH98551.1| tRNA modification GTPase mnmE [Escherichia coli KTE229]
gi|431521915|gb|ELH99151.1| tRNA modification GTPase mnmE [Escherichia coli KTE227]
gi|431526341|gb|ELI03097.1| tRNA modification GTPase mnmE [Escherichia coli KTE104]
gi|431530721|gb|ELI07399.1| tRNA modification GTPase mnmE [Escherichia coli KTE106]
gi|431548062|gb|ELI22350.1| tRNA modification GTPase mnmE [Escherichia coli KTE113]
gi|431565849|gb|ELI38924.1| tRNA modification GTPase mnmE [Escherichia coli KTE124]
gi|431593966|gb|ELI64257.1| tRNA modification GTPase mnmE [Escherichia coli KTE131]
gi|431598050|gb|ELI67951.1| tRNA modification GTPase mnmE [Escherichia coli KTE133]
gi|431600735|gb|ELI70402.1| tRNA modification GTPase mnmE [Escherichia coli KTE137]
gi|431616080|gb|ELI85148.1| tRNA modification GTPase mnmE [Escherichia coli KTE145]
gi|431630611|gb|ELI98940.1| tRNA modification GTPase mnmE [Escherichia coli KTE153]
gi|431640229|gb|ELJ07990.1| tRNA modification GTPase mnmE [Escherichia coli KTE160]
gi|431655850|gb|ELJ22880.1| tRNA modification GTPase mnmE [Escherichia coli KTE167]
gi|431657541|gb|ELJ24505.1| tRNA modification GTPase mnmE [Escherichia coli KTE168]
gi|431667170|gb|ELJ33762.1| tRNA modification GTPase mnmE [Escherichia coli KTE174]
gi|431670059|gb|ELJ36418.1| tRNA modification GTPase mnmE [Escherichia coli KTE176]
gi|431683633|gb|ELJ49262.1| tRNA modification GTPase mnmE [Escherichia coli KTE179]
gi|431684057|gb|ELJ49678.1| tRNA modification GTPase mnmE [Escherichia coli KTE180]
gi|431702165|gb|ELJ66966.1| tRNA modification GTPase mnmE [Escherichia coli KTE88]
gi|431717017|gb|ELJ81120.1| tRNA modification GTPase mnmE [Escherichia coli KTE94]
gi|431728149|gb|ELJ91870.1| tRNA modification GTPase mnmE [Escherichia coli KTE97]
gi|431731423|gb|ELJ94924.1| tRNA modification GTPase mnmE [Escherichia coli KTE99]
gi|432349475|gb|ELL43902.1| tRNA modification GTPase TrmE [Escherichia coli J96]
gi|441713440|emb|CCQ06551.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli
Nissle 1917]
Length = 454
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 171/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + + +I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NNVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|304405894|ref|ZP_07387552.1| tRNA modification GTPase TrmE [Paenibacillus curdlanolyticus YK9]
gi|304345137|gb|EFM10973.1| tRNA modification GTPase TrmE [Paenibacillus curdlanolyticus YK9]
Length = 461
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 124/348 (35%), Positives = 183/348 (52%), Gaps = 70/348 (20%)
Query: 99 GKCGVSVIRVSGPD----TLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCL 154
G+ +++IRVSGPD T + +S + + Y +IVDP++ ++E L
Sbjct: 16 GEGSIAIIRVSGPDAIERTADVFRSKEDFRSAESHTVHYG---HIVDPLTNQRVEEVLVT 72
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
P SFTGED E HG + +L + K PG+R AEPGEF+KRAF N ++DLTQ
Sbjct: 73 VMRGPRSFTGEDVVEIGTHGGVIAAKNVLQLVLKQPGIRVAEPGEFTKRAFLNGRIDLTQ 132
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
EA+ DLI+++++ Q A+ Q +G+L + ++ RQ I+E +A VE ID+ E ++ E
Sbjct: 133 AEAVMDLIRSKSDRAFQVAMKQSEGSLSKRIADLRQTIIEVIAHVEVNIDYPEHDVEE-- 190
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
+ S ++ H CGV + G+K ++ AS
Sbjct: 191 ----LTSAFIREH------------CGVAL-EGVKRLLKTAS------------------ 215
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
G I +R GI + IVG PNVGKSSL+N L Q +IVT
Sbjct: 216 ----------EGKI-------------LREGIVTAIVGRPNVGKSSLLNALTQSNKAIVT 252
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKNN 442
IPGTTRDVIE+ + + G P+ LLDTAG+R T+D++E G +E++N
Sbjct: 253 DIPGTTRDVIEEFVTVNGIPLRLLDTAGIR-ETADVVERIG--VERSN 297
>gi|15804300|ref|NP_290339.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str.
EDL933]
gi|12518545|gb|AAG58903.1|AE005601_9 GTP-binding protein in thiophene and furan oxidation [Escherichia
coli O157:H7 str. EDL933]
Length = 454
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGEB E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEBVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEBVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|300983699|ref|ZP_07176709.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 200-1]
gi|422360685|ref|ZP_16441314.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 110-3]
gi|300306872|gb|EFJ61392.1| tRNA modification GTPase TrmE [Escherichia coli MS 200-1]
gi|315285497|gb|EFU44942.1| tRNA modification GTPase TrmE [Escherichia coli MS 110-3]
Length = 475
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 171/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 36 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 90
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 91 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 150
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 151 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 207
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + + +I D L+ VR
Sbjct: 208 ---------GKIEAQL-------------------------------NNVIAD--LDAVR 225
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 226 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 270
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 271 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 302
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 26 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVL 80
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 81 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 139
>gi|417285878|ref|ZP_12073169.1| tRNA modification GTPase TrmE [Escherichia coli TW07793]
gi|425302613|ref|ZP_18692492.1| tRNA modification GTPase TrmE [Escherichia coli 07798]
gi|386251119|gb|EII97286.1| tRNA modification GTPase TrmE [Escherichia coli TW07793]
gi|408210611|gb|EKI35173.1| tRNA modification GTPase TrmE [Escherichia coli 07798]
Length = 454
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 171/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + + +I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NNVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|432566098|ref|ZP_19802654.1| tRNA modification GTPase mnmE [Escherichia coli KTE51]
gi|431089666|gb|ELD95472.1| tRNA modification GTPase mnmE [Escherichia coli KTE51]
Length = 454
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|197286945|ref|YP_002152817.1| tRNA modification GTPase TrmE [Proteus mirabilis HI4320]
gi|254811490|sp|B4F0U0.1|MNME_PROMH RecName: Full=tRNA modification GTPase MnmE
gi|194684432|emb|CAR46143.1| probable tRNA modification GTPase [Proteus mirabilis HI4320]
Length = 454
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 119/335 (35%), Positives = 167/335 (49%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYAS---LRNIVDPVSEVVLDEGLCLW 155
G+ GV ++RVSGP +++ KV KPRYA RN VLD+G+ L+
Sbjct: 15 GRGGVGILRVSGPKAAVVAQTILG----KVPKPRYADYLPFRN----EDNSVLDQGIALF 66
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
FP PNSFTGED E Q HG +++ +L + ++PG+R A+PGEFS+RAF N+KLDL Q
Sbjct: 67 FPNPNSFTGEDVLELQGHGGPIILDLLLKRILQIPGIRIAKPGEFSERAFLNDKLDLAQA 126
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
EA+ DLI A +E
Sbjct: 127 EAIADLIDASSE------------------------------------------------ 138
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILN 335
RS + L G+ HI + +R +++ I E IDF D +IE LN
Sbjct: 139 -QAARSAINSLQGAFSSHINEMVESLTNLRIYVEAAIDFPDEE--IDFLSDGVIEGK-LN 194
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
TV SQ+ + + G +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 195 TVISQL--------DDVRTQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 246
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 247 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYAS---LRNIVDPVSK 84
+TI A ++ G+ GV ++RVSGP +++ KVPKPRYA RN
Sbjct: 5 DTIVAQATPPGRGGVGILRVSGPKAAVVAQTILG----KVPKPRYADYLPFRN----EDN 56
Query: 85 VVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNI 139
VLD+G+ L+FP + G V+ + GP L+ LK + P +++KP S R
Sbjct: 57 SVLDQGIALFFPNPNSFTGEDVLELQGHGGPIILDLLLKRILQIPGIRIAKPGEFSERAF 116
Query: 140 VD 141
++
Sbjct: 117 LN 118
>gi|340001314|ref|YP_004732198.1| thiophene and furan oxidation protein [Salmonella bongori NCTC
12419]
gi|339514676|emb|CCC32446.1| thiophene and furan oxidation protein [Salmonella bongori NCTC
12419]
Length = 454
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 171/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG LNA K +A K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LNA-KEVAQAVLGKLPKPRYADYLPFND-ADGTTLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG +++ +L + +PG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PHSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSSRVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + + +I D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NSVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRVASDEV 281
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG LNA K +A K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LNA-KEVAQAVLGKLPKPRYADYLPFND-ADGTTL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP H G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIARPGEFSERAFLN 118
>gi|300984421|ref|ZP_07176985.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 45-1]
gi|300408377|gb|EFJ91915.1| tRNA modification GTPase TrmE [Escherichia coli MS 45-1]
Length = 479
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 171/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 40 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 94
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 95 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 154
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 155 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 210
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + + +I D L+ VR
Sbjct: 211 --------DGKIEAQL-------------------------------NNVIAD--LDAVR 229
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 230 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 274
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 275 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 306
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 30 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVL 84
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 85 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 143
>gi|415838512|ref|ZP_11520483.1| tRNA modification GTPase TrmE [Escherichia coli RN587/1]
gi|417281136|ref|ZP_12068436.1| tRNA modification GTPase TrmE [Escherichia coli 3003]
gi|425280167|ref|ZP_18671380.1| tRNA modification GTPase TrmE [Escherichia coli ARS4.2123]
gi|323189559|gb|EFZ74839.1| tRNA modification GTPase TrmE [Escherichia coli RN587/1]
gi|386245465|gb|EII87195.1| tRNA modification GTPase TrmE [Escherichia coli 3003]
gi|408197526|gb|EKI22785.1| tRNA modification GTPase TrmE [Escherichia coli ARS4.2123]
Length = 454
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 171/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + + +I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NNVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|170106165|ref|XP_001884294.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164640640|gb|EDR04904.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 527
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 130/347 (37%), Positives = 180/347 (51%), Gaps = 76/347 (21%)
Query: 99 GKCGVSVIRVSGPDTLNAL----------KSMACYPDQKVSKPRYASLRNIVDPVSEVVL 148
GK GV+VIRVSGP+ L+ K++A Y + P +V P ++ +L
Sbjct: 78 GKAGVAVIRVSGPEALDVWRRVIQPTCKRKALADY----IPTPWKMERCRVVHPETQEML 133
Query: 149 DEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNN 208
D+GL ++F P+SFT ED E +H A++ ++LG+L LP RPAEPGEF++RAF
Sbjct: 134 DDGLAVYFRAPHSFTTEDVVELHIHSGRAIVASVLGSLALLPSCRPAEPGEFTRRAFLGG 193
Query: 209 KLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSED 268
+LD L Q++G LK L ID D
Sbjct: 194 RLD----------------------LTQVEG-LKDL------------------IDAETD 212
Query: 269 EIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI 328
R +Q G E EL R GI + CLA +EA IDF E E
Sbjct: 213 ---------AQRRIALQAAGVGEIFDEL--------RKGI--INCLAQIEALIDFGEGED 253
Query: 329 IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQK 388
IE+ + + R Q L +++ ++ ++ G +RSG++ I G PN GKSSL+NFL +
Sbjct: 254 IEEGVYDEARIQGKVLLDTMKLYLN-DHRRGELMRSGLRLAIFGPPNAGKSSLLNFLGKL 312
Query: 389 QISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
Q +IVTSIPGTTRD++E LDIGG PVI+ DTAGLR T D++E+ G
Sbjct: 313 QAAIVTSIPGTTRDILELSLDIGGLPVIVADTAGLR-HTEDVVESIG 358
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 14/81 (17%)
Query: 25 AIKNTIFALSSGHGKCGVSVIRVSGPDTLNAL----------KSMACYPDQKVPKPRYAS 74
A + TI+ALS+ GK GV+VIRVSGP+ L+ K++A Y +P P
Sbjct: 65 AQRRTIYALSTPPGKAGVAVIRVSGPEALDVWRRVIQPTCKRKALADY----IPTPWKME 120
Query: 75 LRNIVDPVSKVVLDEGLCLWF 95
+V P ++ +LD+GL ++F
Sbjct: 121 RCRVVHPETQEMLDDGLAVYF 141
>gi|190171304|gb|ACE63722.1| ThdF [Cronobacter sakazakii]
Length = 439
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + +++ K+ K RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLSD 178
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 179 ---------GKIEAQL-------------------------------NEVIGD--LDAVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 273
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++RVSG + +++ K+PK RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 110
>gi|190171268|gb|ACE63704.1| ThdF [Cronobacter genomosp. 1]
Length = 439
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + +++ K+ K RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLSD 178
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 179 ---------GKIEAQL-------------------------------NEVIGD--LDAVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 273
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++RVSG + +++ K+PK RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 110
>gi|421814758|ref|ZP_16250458.1| tRNA modification GTPase TrmE [Escherichia coli 8.0416]
gi|408599117|gb|EKK73041.1| tRNA modification GTPase TrmE [Escherichia coli 8.0416]
Length = 454
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISG----FIAREVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG + +A K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISG----FIAREVAETVLGKLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|190171258|gb|ACE63699.1| ThdF [Cronobacter dublinensis]
Length = 439
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + +++ K+ K RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLS- 177
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 178 --------DGKIEAQL-------------------------------NEVIGD--LDAVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 273
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++RVSG + +++ K+PK RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 110
>gi|365847371|ref|ZP_09387860.1| tRNA modification GTPase TrmE [Yokenella regensburgei ATCC 43003]
gi|364572625|gb|EHM50165.1| tRNA modification GTPase TrmE [Yokenella regensburgei ATCC 43003]
Length = 454
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 171/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKD-TDGTPLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSSRVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + + +I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NTVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 281
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKD-TDGTPL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P +++KP S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLN 118
>gi|190171260|gb|ACE63700.1| ThdF [Cronobacter dublinensis]
Length = 439
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + +++ K+ K RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLS- 177
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 178 --------DGKIEAQL-------------------------------NEVIGD--LDAVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 273
Score = 45.1 bits (105), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++RVSG + +++ K+PK RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 110
>gi|190171286|gb|ACE63713.1| ThdF [Cronobacter muytjensii]
gi|190171288|gb|ACE63714.1| ThdF [Cronobacter muytjensii]
gi|190171292|gb|ACE63716.1| ThdF [Cronobacter muytjensii]
gi|190171294|gb|ACE63717.1| ThdF [Cronobacter muytjensii]
Length = 439
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + +++ K+ K RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLS- 177
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 178 --------DGKIEAQL-------------------------------NEVIGD--LDAVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 273
Score = 45.1 bits (105), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++RVSG + +++ K+PK RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 110
>gi|432468037|ref|ZP_19710114.1| tRNA modification GTPase mnmE [Escherichia coli KTE205]
gi|432585247|ref|ZP_19821638.1| tRNA modification GTPase mnmE [Escherichia coli KTE57]
gi|433074982|ref|ZP_20261619.1| tRNA modification GTPase mnmE [Escherichia coli KTE129]
gi|433122336|ref|ZP_20307991.1| tRNA modification GTPase mnmE [Escherichia coli KTE157]
gi|433185444|ref|ZP_20369678.1| tRNA modification GTPase mnmE [Escherichia coli KTE85]
gi|430990979|gb|ELD07399.1| tRNA modification GTPase mnmE [Escherichia coli KTE205]
gi|431115147|gb|ELE18674.1| tRNA modification GTPase mnmE [Escherichia coli KTE57]
gi|431583497|gb|ELI55502.1| tRNA modification GTPase mnmE [Escherichia coli KTE129]
gi|431638854|gb|ELJ06732.1| tRNA modification GTPase mnmE [Escherichia coli KTE157]
gi|431702414|gb|ELJ67214.1| tRNA modification GTPase mnmE [Escherichia coli KTE85]
Length = 454
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + + +I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NNVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|190171290|gb|ACE63715.1| ThdF [Cronobacter muytjensii]
Length = 439
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + +++ K+ K RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLSD 178
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 179 ---------GKIEAQL-------------------------------NEVIGD--LDAVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 273
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++RVSG + +++ K+PK RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 110
>gi|430811966|emb|CCJ30615.1| unnamed protein product [Pneumocystis jirovecii]
Length = 460
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 123/339 (36%), Positives = 176/339 (51%), Gaps = 63/339 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK ++VIR+SGP++ ++++ P +K+ K RY SLR I P + +LD L F
Sbjct: 33 GKSAIAVIRISGPESFRVVEALC--PSRKLPKSRYLSLREIKHPKTGELLDRACLLLFDG 90
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLP-GLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGED E VHG A+I +IL A+ + AEPGEFS+R+F N KLDLTQ E
Sbjct: 91 PCSFTGEDMAELHVHGGAAIIRSILDAIANSHCDVEYAEPGEFSRRSFENGKLDLTQAEG 150
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ D+I AETE QR+ A+ Q+ G+LK++Y W++ +++ +EA IDF ED+ I D+I
Sbjct: 151 IYDMINAETEEQRKLAIRQIDGSLKRIYERWKEELVDYRCHLEAIIDFGEDDDINDDIYF 210
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+ +V ++ H+++S CG +R GIK I F + ++LN +
Sbjct: 211 QIYKKVEGFVVRLQDHLKMS-VCGELLRHGIKVSI----------FGLPNAGKSSLLNVI 259
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
RS S++ EP
Sbjct: 260 TR-----------------------RSA--SIVSSEP----------------------- 271
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTS-DIIETEG 435
GTTRDVI+ +DIGG+PVI DTAGLR + D IE EG
Sbjct: 272 GTTRDVIDVIVDIGGFPVIFSDTAGLRQGNNIDFIEKEG 310
>gi|392981405|ref|YP_006479993.1| tRNA modification GTPase TrmE [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392327338|gb|AFM62291.1| tRNA modification GTPase TrmE [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 454
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKD-TDGTPLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + ++++ D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NDVMAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 281
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKD-TDGTPL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P +++KP S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLN 118
>gi|190171272|gb|ACE63706.1| ThdF [Cronobacter malonaticus]
gi|190171274|gb|ACE63707.1| ThdF [Cronobacter malonaticus]
gi|190171278|gb|ACE63709.1| ThdF [Cronobacter malonaticus]
gi|190171280|gb|ACE63710.1| ThdF [Cronobacter malonaticus]
gi|190171282|gb|ACE63711.1| ThdF [Cronobacter malonaticus]
gi|190171284|gb|ACE63712.1| ThdF [Cronobacter malonaticus]
Length = 439
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + +++ K+ K RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLSD 178
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 179 ---------GKIEAQL-------------------------------NEVIGD--LDAVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 273
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++RVSG + +++ K+PK RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 110
>gi|190171266|gb|ACE63703.1| ThdF [Cronobacter dublinensis]
Length = 439
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + +++ K+ K RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLS- 177
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 178 --------DGKIEAQL-------------------------------NEVIGD--LDAVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 273
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++RVSG + +++ K+PK RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 110
>gi|345301592|ref|YP_004830950.1| tRNA modification GTPase mnmE [Enterobacter asburiae LF7a]
gi|345095529|gb|AEN67165.1| tRNA modification GTPase mnmE [Enterobacter asburiae LF7a]
Length = 454
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 173/332 (52%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKD-ADGTALDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + + ++ D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NNVMAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q GS+ +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ--GSL-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKD-ADGTAL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P +++KP S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLN 118
>gi|336247905|ref|YP_004591615.1| tRNA modification GTPase TrmE [Enterobacter aerogenes KCTC 2190]
gi|334733961|gb|AEG96336.1| tRNA modification GTPase TrmE [Enterobacter aerogenes KCTC 2190]
Length = 454
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +++ K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFKD-ADGTPLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIANPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 281
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG + +++ K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFKD-ADGTPL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P +++ P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIANPGEFSERAFLN 118
>gi|190171314|gb|ACE63727.1| ThdF [Cronobacter sakazakii]
Length = 439
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + +++ K+ K RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLSD 178
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 179 ---------GKIEAQL-------------------------------NEVIGD--LDAVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 273
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++RVSG + +++ K+PK RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 110
>gi|190171312|gb|ACE63726.1| ThdF [Cronobacter sakazakii]
Length = 439
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + +++ K+ K RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLSD 178
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 179 ---------GKIEAQL-------------------------------NEVIGD--LDAVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 273
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++RVSG + +++ K+PK RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 110
>gi|190171180|gb|ACE63660.1| ThdF [Enterobacter aerogenes]
Length = 439
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +++ K+ KPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFKD-ADGTPLDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIANPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 178
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 179 ---------GKIEAQL-------------------------------NDVIAD--LDAVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 273
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++R+SG + +++ K+PKPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFKD-ADGTPLDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P +++ P S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIANPGEFSERAFLN 110
>gi|440289820|ref|YP_007342585.1| tRNA modification GTPase TrmE [Enterobacteriaceae bacterium strain
FGI 57]
gi|440049342|gb|AGB80400.1| tRNA modification GTPase TrmE [Enterobacteriaceae bacterium strain
FGI 57]
Length = 467
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D V LD+G+ LWFP
Sbjct: 28 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKD-VDGTALDQGIALWFPG 82
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 83 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIAKPGEFSERAFLNDKLDLAQAEAI 142
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 143 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 198
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + + ++ D L+ VR
Sbjct: 199 --------DGKIEAQL-------------------------------NNVMTD--LDAVR 217
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 218 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 262
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 263 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 294
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 14/133 (10%)
Query: 15 IFFSRR-CSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYA 73
++++R SH +TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA
Sbjct: 7 LYWTRYIMSH---NDTIIAQATPPGRGGVGILRISG---LKA-REVAEAVLGKLPKPRYA 59
Query: 74 SLRNIVDPVSKVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKV 128
D V LD+G+ LWFP + G V+ + GP L+ LK + P ++
Sbjct: 60 DYLPFKD-VDGTALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRI 118
Query: 129 SKPRYASLRNIVD 141
+KP S R ++
Sbjct: 119 AKPGEFSERAFLN 131
>gi|190171270|gb|ACE63705.1| ThdF [Cronobacter genomosp. 1]
gi|190171276|gb|ACE63708.1| ThdF [Cronobacter malonaticus]
gi|190171298|gb|ACE63719.1| ThdF [Cronobacter sakazakii]
gi|190171300|gb|ACE63720.1| ThdF [Cronobacter sakazakii]
gi|190171302|gb|ACE63721.1| ThdF [Cronobacter sakazakii]
gi|190171306|gb|ACE63723.1| ThdF [Cronobacter sakazakii]
gi|190171308|gb|ACE63724.1| ThdF [Cronobacter sakazakii]
gi|190171310|gb|ACE63725.1| ThdF [Cronobacter sakazakii]
gi|190171320|gb|ACE63730.1| ThdF [Cronobacter sakazakii]
gi|190171324|gb|ACE63732.1| ThdF [Cronobacter sakazakii]
gi|190171330|gb|ACE63735.1| ThdF [Cronobacter sakazakii]
gi|190171336|gb|ACE63738.1| ThdF [Cronobacter sakazakii]
gi|190171338|gb|ACE63739.1| ThdF [Cronobacter sakazakii]
gi|190171340|gb|ACE63740.1| ThdF [Cronobacter sakazakii]
gi|190171342|gb|ACE63741.1| ThdF [Cronobacter sakazakii]
Length = 439
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + +++ K+ K RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLSD 178
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 179 ---------GKIEAQL-------------------------------NEVIGD--LDAVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 273
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++RVSG + +++ K+PK RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 110
>gi|420376853|ref|ZP_14876552.1| tRNA modification GTPase TrmE, partial [Shigella flexneri 1235-66]
gi|391300079|gb|EIQ58006.1| tRNA modification GTPase TrmE, partial [Shigella flexneri 1235-66]
Length = 448
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 9 GRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 63
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 64 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 123
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 124 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 179
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + ++++ D L+ VR
Sbjct: 180 --------DGKIEAQL-------------------------------NDVMAD--LDAVR 198
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 199 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 243
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 244 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 275
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 30 IFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDE 89
I A ++ G+ GV ++R+SG +++ K+PKPRYA D VLD+
Sbjct: 1 IVAQATPPGRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVLDQ 55
Query: 90 GLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 56 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 112
>gi|24114984|ref|NP_709494.1| tRNA modification GTPase TrmE [Shigella flexneri 2a str. 301]
gi|30065014|ref|NP_839185.1| tRNA modification GTPase TrmE [Shigella flexneri 2a str. 2457T]
gi|110807604|ref|YP_691124.1| tRNA modification GTPase TrmE [Shigella flexneri 5 str. 8401]
gi|384545280|ref|YP_005729344.1| tRNA modification GTPase trmE [Shigella flexneri 2002017]
gi|415858301|ref|ZP_11532871.1| tRNA modification GTPase TrmE [Shigella flexneri 2a str. 2457T]
gi|417704559|ref|ZP_12353652.1| tRNA modification GTPase TrmE [Shigella flexneri K-218]
gi|417709811|ref|ZP_12358825.1| tRNA modification GTPase TrmE [Shigella flexneri VA-6]
gi|417714766|ref|ZP_12363716.1| tRNA modification GTPase TrmE [Shigella flexneri K-272]
gi|417719664|ref|ZP_12368544.1| tRNA modification GTPase TrmE [Shigella flexneri K-227]
gi|417725471|ref|ZP_12374254.1| tRNA modification GTPase TrmE [Shigella flexneri K-304]
gi|417730752|ref|ZP_12379434.1| tRNA modification GTPase TrmE [Shigella flexneri K-671]
gi|417735820|ref|ZP_12384456.1| tRNA modification GTPase TrmE [Shigella flexneri 2747-71]
gi|417740661|ref|ZP_12389227.1| tRNA modification GTPase TrmE [Shigella flexneri 4343-70]
gi|417745678|ref|ZP_12394195.1| tRNA modification GTPase TrmE [Shigella flexneri 2930-71]
gi|417830119|ref|ZP_12476657.1| tRNA modification GTPase TrmE [Shigella flexneri J1713]
gi|418259683|ref|ZP_12882410.1| tRNA modification GTPase TrmE [Shigella flexneri 6603-63]
gi|420322768|ref|ZP_14824585.1| tRNA modification GTPase TrmE [Shigella flexneri 2850-71]
gi|420333624|ref|ZP_14835259.1| tRNA modification GTPase TrmE [Shigella flexneri K-1770]
gi|420344177|ref|ZP_14845634.1| tRNA modification GTPase TrmE [Shigella flexneri K-404]
gi|424839979|ref|ZP_18264616.1| tRNA modification GTPase TrmE [Shigella flexneri 5a str. M90T]
gi|46577445|sp|Q83PL3.1|MNME_SHIFL RecName: Full=tRNA modification GTPase MnmE
gi|123146522|sp|Q0SYP6.1|MNME_SHIF8 RecName: Full=tRNA modification GTPase MnmE
gi|24054236|gb|AAN45201.1| GTP-binding protein in thiophene and furan oxidation [Shigella
flexneri 2a str. 301]
gi|30043275|gb|AAP18996.1| GTP-binding protein in thiophene and furan oxidation [Shigella
flexneri 2a str. 2457T]
gi|110617152|gb|ABF05819.1| GTP-binding protein in thiophene and furan oxidation [Shigella
flexneri 5 str. 8401]
gi|281603067|gb|ADA76051.1| tRNA modification GTPase trmE [Shigella flexneri 2002017]
gi|313647714|gb|EFS12162.1| tRNA modification GTPase TrmE [Shigella flexneri 2a str. 2457T]
gi|332750527|gb|EGJ80936.1| tRNA modification GTPase TrmE [Shigella flexneri K-671]
gi|332750698|gb|EGJ81106.1| tRNA modification GTPase TrmE [Shigella flexneri 4343-70]
gi|332751721|gb|EGJ82119.1| tRNA modification GTPase TrmE [Shigella flexneri 2747-71]
gi|332764077|gb|EGJ94314.1| tRNA modification GTPase TrmE [Shigella flexneri 2930-71]
gi|332996037|gb|EGK15664.1| tRNA modification GTPase TrmE [Shigella flexneri VA-6]
gi|332997083|gb|EGK16699.1| tRNA modification GTPase TrmE [Shigella flexneri K-218]
gi|332997872|gb|EGK17480.1| tRNA modification GTPase TrmE [Shigella flexneri K-272]
gi|333013208|gb|EGK32581.1| tRNA modification GTPase TrmE [Shigella flexneri K-304]
gi|333013667|gb|EGK33032.1| tRNA modification GTPase TrmE [Shigella flexneri K-227]
gi|335573350|gb|EGM59707.1| tRNA modification GTPase TrmE [Shigella flexneri J1713]
gi|383469031|gb|EID64052.1| tRNA modification GTPase TrmE [Shigella flexneri 5a str. M90T]
gi|391244327|gb|EIQ03611.1| tRNA modification GTPase TrmE [Shigella flexneri 2850-71]
gi|391244780|gb|EIQ04057.1| tRNA modification GTPase TrmE [Shigella flexneri K-1770]
gi|391261460|gb|EIQ20507.1| tRNA modification GTPase TrmE [Shigella flexneri K-404]
gi|397894195|gb|EJL10644.1| tRNA modification GTPase TrmE [Shigella flexneri 6603-63]
Length = 454
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + ++++ D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVMAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|429094666|ref|ZP_19157192.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
dublinensis 1210]
gi|426740237|emb|CCJ83305.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
dublinensis 1210]
Length = 454
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + +++ K+ K RYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NEVIGD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++RVSG + +++ K+PK RYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTAL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118
>gi|336257917|ref|XP_003343780.1| hypothetical protein SMAC_04438 [Sordaria macrospora k-hell]
Length = 602
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 132/406 (32%), Positives = 192/406 (47%), Gaps = 124/406 (30%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI+ALSSG G+ G++V N+L C P + VPKPRYA++R + +P +
Sbjct: 74 DTIYALSSGSGRAGIAV--------YNSL----C-PTKPVPKPRYAAVRTLTEPTA---- 116
Query: 88 DEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVV 147
P ++VS A+ N++D
Sbjct: 117 ------------------------------------PGKEVSS---AANANVLD------ 131
Query: 148 LDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG-----LRPAEPGEFSK 202
+ L L+FP P + TGED E VHG A + A+L A+ K +R AE GEF+K
Sbjct: 132 -TDALVLYFPGPKTVTGEDILELHVHGGSATVKAVLSAIPKSESTSSGTIRYAEQGEFTK 190
Query: 203 RAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAY 262
RAF NN++DL Q EALGD + AETE QR+ A+ G L + Y WR+ +L + +EA
Sbjct: 191 RAFLNNRIDLAQVEALGDTLSAETEQQRRAAIRGTSGVLGKTYESWREQLLLARGEIEAL 250
Query: 263 IDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYID 322
IDFSED+ +++ +R+ V L I + I+L
Sbjct: 251 IDFSEDQHFDESPTELLRN-VTHLVKGILRSIKLHE------------------------ 285
Query: 323 FSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLM 382
+ + RS+++ + G+RI ++G PNVGKSSLM
Sbjct: 286 -----------MGSQRSELL--------------RNGIRI------ALLGPPNVGKSSLM 314
Query: 383 NFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428
N + ++ SIV+S GTTRD++E LDI GY DTAG+RT +S
Sbjct: 315 NLIVGREASIVSSEAGTTRDIVEASLDIRGYLCSFADTAGIRTRSS 360
>gi|190171334|gb|ACE63737.1| ThdF [Cronobacter sakazakii]
Length = 440
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + +++ K+ K RYA D LD+G+ LWFP
Sbjct: 8 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 62
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 63 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 122
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 123 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLSD 179
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 180 ---------GKIEAQL-------------------------------NEVIGD--LDAVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 198 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 242
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 243 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 274
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++RVSG + +++ K+PK RYA D LD+G+ LWFP
Sbjct: 8 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 62
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 63 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 111
>gi|190171262|gb|ACE63701.1| ThdF [Cronobacter dublinensis]
gi|190171264|gb|ACE63702.1| ThdF [Cronobacter dublinensis]
Length = 439
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + +++ K+ K RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKSRYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLS- 177
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 178 --------DGKIEAQL-------------------------------NEVIGD--LDAVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 273
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++RVSG + +++ K+PK RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKSRYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 110
>gi|429088846|ref|ZP_19151578.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
universalis NCTC 9529]
gi|429107525|ref|ZP_19169394.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
malonaticus 681]
gi|426294248|emb|CCJ95507.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
malonaticus 681]
gi|426508649|emb|CCK16690.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
universalis NCTC 9529]
Length = 454
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + +++ K+ K RYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NEVIGD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++RVSG + +++ K+PK RYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTAL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118
>gi|429098786|ref|ZP_19160892.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
dublinensis 582]
gi|426285126|emb|CCJ87005.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
dublinensis 582]
Length = 454
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + +++ K+ K RYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRVSGQQARDVAQAVLG----KLPKSRYADYLPFKD-ADGTALDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NEVIGD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++RVSG + +++ K+PK RYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRVSGQQARDVAQAVLG----KLPKSRYADYLPFKD-ADGTAL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118
>gi|425189035|ref|ZP_18586292.1| tRNA modification GTPase TrmE [Escherichia coli FRIK1997]
gi|408100956|gb|EKH33430.1| tRNA modification GTPase TrmE [Escherichia coli FRIK1997]
Length = 454
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAT 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|417790221|ref|ZP_12437799.1| tRNA modification GTPase TrmE [Cronobacter sakazakii E899]
gi|429112317|ref|ZP_19174087.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
malonaticus 507]
gi|429117494|ref|ZP_19178412.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
sakazakii 701]
gi|449310178|ref|YP_007442534.1| tRNA modification GTPase TrmE [Cronobacter sakazakii SP291]
gi|333955731|gb|EGL73456.1| tRNA modification GTPase TrmE [Cronobacter sakazakii E899]
gi|426313474|emb|CCK00200.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
malonaticus 507]
gi|426320623|emb|CCK04525.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
sakazakii 701]
gi|449100211|gb|AGE88245.1| tRNA modification GTPase TrmE [Cronobacter sakazakii SP291]
Length = 454
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + +++ K+ K RYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NEVIGD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++RVSG + +++ K+PK RYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTAL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118
>gi|302660640|ref|XP_003021997.1| hypothetical protein TRV_03891 [Trichophyton verrucosum HKI 0517]
gi|291185921|gb|EFE41379.1| hypothetical protein TRV_03891 [Trichophyton verrucosum HKI 0517]
Length = 594
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 123/346 (35%), Positives = 178/346 (51%), Gaps = 77/346 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEV----VLDEG-LC 153
G+ +++IR+SGPD + ++ P++K+ KPR+A+LR I +P V LD G L
Sbjct: 55 GRAAIAIIRISGPDCIPIYNALC--PNRKLPKPRFAALRTIYEPGKPVSADNALDSGALV 112
Query: 154 LWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL--PG------LRPAEPGEFSKRAF 205
FP PN+ TGED E VHG AVI +IL A+ K PG +R AEPGEF++RAF
Sbjct: 113 FHFPAPNTVTGEDVLELHVHGGPAVIKSILSAIPKCASPGDAPSASIRYAEPGEFTRRAF 172
Query: 206 FNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDF 265
N++LDL Q EALG+ + A+TE QR+ A+ L Y +W
Sbjct: 173 LNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDALSTRYEQW----------------- 215
Query: 266 SEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSE 325
R Q++ G +E A IDFSE
Sbjct: 216 --------------RKQLLYARGELE---------------------------ALIDFSE 234
Query: 326 DEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLM 382
D+ + D+ +++V QV L I HI+ ++K G +RSGIK ++G PN GKSSL+
Sbjct: 235 DQHFDESVDDFISSVTGQVDSLLHQINLHIKNASK-GELLRSGIKVALLGAPNAGKSSLL 293
Query: 383 NFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428
N + + +IV+S GTTRD+++ +D+GG+ D AGLR+ S
Sbjct: 294 NQIVGRDAAIVSSEEGTTRDIVDVGIDLGGWLCKFGDMAGLRSKLS 339
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 151/299 (50%), Gaps = 70/299 (23%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TI+ALS+ G+ +++IR+SGPD + ++ P++K+PKPR+A+LR I +P V
Sbjct: 45 TTIYALSTAPGRAAIAIIRISGPDCIPIYNALC--PNRKLPKPRFAALRTIYEPGKPVSA 102
Query: 88 DEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVV 147
D NAL S A
Sbjct: 103 D--------------------------NALDSGA-------------------------- 110
Query: 148 LDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL--PG------LRPAEPGE 199
L FP PN+ TGED E VHG AVI +IL A+ K PG +R AEPGE
Sbjct: 111 ----LVFHFPAPNTVTGEDVLELHVHGGPAVIKSILSAIPKCASPGDAPSASIRYAEPGE 166
Query: 200 FSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASV 259
F++RAF N++LDL Q EALG+ + A+TE QR+ A+ L Y +WR+ +L + +
Sbjct: 167 FTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDALSTRYEQWRKQLLYARGEL 226
Query: 260 EAYIDFSEDEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA 315
EA IDFSED+ + D+ +++V QV L I HI+ ++K G +RSGIK + A
Sbjct: 227 EALIDFSEDQHFDESVDDFISSVTGQVDSLLHQINLHIKNASK-GELLRSGIKVALLGA 284
>gi|423117070|ref|ZP_17104761.1| tRNA modification GTPase mnmE [Klebsiella oxytoca 10-5245]
gi|376376939|gb|EHS89714.1| tRNA modification GTPase mnmE [Klebsiella oxytoca 10-5245]
Length = 454
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 168/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +++ K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFKDSDGSA-LDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSTRVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + + +I D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NAVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDANDEV 281
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG + +++ K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFKDS-DGSAL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 118
>gi|423126518|ref|ZP_17114197.1| tRNA modification GTPase mnmE [Klebsiella oxytoca 10-5250]
gi|376397152|gb|EHT09787.1| tRNA modification GTPase mnmE [Klebsiella oxytoca 10-5250]
Length = 454
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +++ K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFKDSDGSA-LDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSTRVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDANDEV 281
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG + +++ K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFKDS-DGSAL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118
>gi|423105586|ref|ZP_17093288.1| tRNA modification GTPase mnmE [Klebsiella oxytoca 10-5242]
gi|376380464|gb|EHS93210.1| tRNA modification GTPase mnmE [Klebsiella oxytoca 10-5242]
Length = 454
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +++ K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFKDSDGSA-LDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSTRVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDANDEV 281
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG + +++ K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFKDS-DGSAL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118
>gi|444353989|ref|YP_007390133.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Enterobacter
aerogenes EA1509E]
gi|443904819|emb|CCG32593.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Enterobacter
aerogenes EA1509E]
Length = 467
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +++ K+ KPRYA D LD+G+ LWFP
Sbjct: 28 GRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFKD-ADGTPLDQGIALWFPG 82
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 83 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIANPGEFSERAFLNDKLDLAQAEAI 142
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 143 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 199
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 200 ---------GKIEAQL-------------------------------NDVIAD--LDAVR 217
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 218 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 262
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 263 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 294
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG + +++ K+PKPRYA D L
Sbjct: 18 DTIVAQATPPGRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFKD-ADGTPL 72
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P +++ P S R ++
Sbjct: 73 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIANPGEFSERAFLN 131
>gi|190171168|gb|ACE63654.1| ThdF [Citrobacter freundii]
Length = 439
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSTLDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 177
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + + +I D L+ VR
Sbjct: 178 --------DGKIEAQL-------------------------------NNVISD--LDAVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 273
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++R+SG L A + +A K+PKPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSTLDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 110
>gi|329297776|ref|ZP_08255112.1| tRNA modification GTPase TrmE [Plautia stali symbiont]
Length = 454
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 119/336 (35%), Positives = 175/336 (52%), Gaps = 73/336 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISGAKAAEVAQAVLG----KLPKPRYADYLPFND-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LP +R A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRIVALPSVRIAQPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLAS----VEAYIDFSEDEIIEDN 274
DLI A +E + A++ ++G +S + + ++E+L VEA IDF ++EI +
Sbjct: 130 ADLIDASSEQAARSAVNSLQGA----FSLYVKALVEALTHLRIYVEAAIDFPDEEI---D 182
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
L+ G IE + + +I D L
Sbjct: 183 FLS---------DGKIEVQL-------------------------------NAVIGD--L 200
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
N VR++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 201 NGVRAEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVT 245
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 246 DIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGAKAAEVAQAVLG----KLPKPRYADYLPFND-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVALPSVRIAQPGEFSERAFLN 118
>gi|193063795|ref|ZP_03044882.1| tRNA modification GTPase TrmE [Escherichia coli E22]
gi|194428063|ref|ZP_03060607.1| tRNA modification GTPase TrmE [Escherichia coli B171]
gi|260846509|ref|YP_003224287.1| GTPase TrmE [Escherichia coli O103:H2 str. 12009]
gi|293464030|ref|ZP_06664444.1| tRNA modification GTPase TrmE [Escherichia coli B088]
gi|300815046|ref|ZP_07095271.1| tRNA modification GTPase TrmE [Escherichia coli MS 107-1]
gi|415799854|ref|ZP_11499066.1| tRNA modification GTPase TrmE [Escherichia coli E128010]
gi|415831379|ref|ZP_11517096.1| tRNA modification GTPase TrmE [Escherichia coli OK1357]
gi|415873388|ref|ZP_11540643.1| tRNA modification GTPase TrmE [Escherichia coli MS 79-10]
gi|417149361|ref|ZP_11989452.1| tRNA modification GTPase TrmE [Escherichia coli 1.2264]
gi|417157195|ref|ZP_11994819.1| tRNA modification GTPase TrmE [Escherichia coli 96.0497]
gi|417176954|ref|ZP_12006750.1| tRNA modification GTPase TrmE [Escherichia coli 3.2608]
gi|417249357|ref|ZP_12041141.1| tRNA modification GTPase TrmE [Escherichia coli 4.0967]
gi|417583333|ref|ZP_12234132.1| tRNA modification GTPase TrmE [Escherichia coli STEC_B2F1]
gi|417625827|ref|ZP_12276117.1| tRNA modification GTPase TrmE [Escherichia coli STEC_H.1.8]
gi|417669296|ref|ZP_12318833.1| tRNA modification GTPase TrmE [Escherichia coli STEC_O31]
gi|419291930|ref|ZP_13834013.1| tRNA modification GTPase TrmE [Escherichia coli DEC11A]
gi|419297210|ref|ZP_13839245.1| tRNA modification GTPase TrmE [Escherichia coli DEC11B]
gi|419302803|ref|ZP_13844794.1| tRNA modification GTPase TrmE [Escherichia coli DEC11C]
gi|419308745|ref|ZP_13850634.1| tRNA modification GTPase TrmE [Escherichia coli DEC11D]
gi|419313768|ref|ZP_13855626.1| tRNA modification GTPase TrmE [Escherichia coli DEC11E]
gi|419319211|ref|ZP_13861006.1| tRNA modification GTPase TrmE [Escherichia coli DEC12A]
gi|419325456|ref|ZP_13867137.1| tRNA modification GTPase TrmE [Escherichia coli DEC12B]
gi|419331428|ref|ZP_13873020.1| tRNA modification GTPase TrmE [Escherichia coli DEC12C]
gi|419336895|ref|ZP_13878406.1| tRNA modification GTPase TrmE [Escherichia coli DEC12D]
gi|419342299|ref|ZP_13883752.1| tRNA modification GTPase TrmE [Escherichia coli DEC12E]
gi|419872408|ref|ZP_14394445.1| tRNA modification GTPase TrmE [Escherichia coli O103:H2 str.
CVM9450]
gi|420393851|ref|ZP_14893095.1| tRNA modification GTPase TrmE [Escherichia coli EPEC C342-62]
gi|422764107|ref|ZP_16817859.1| tRNA modification GTPase TrmE [Escherichia coli E1167]
gi|432483129|ref|ZP_19725076.1| tRNA modification GTPase mnmE [Escherichia coli KTE210]
gi|432807959|ref|ZP_20041872.1| tRNA modification GTPase mnmE [Escherichia coli KTE91]
gi|432829331|ref|ZP_20062946.1| tRNA modification GTPase mnmE [Escherichia coli KTE135]
gi|432931434|ref|ZP_20131491.1| tRNA modification GTPase mnmE [Escherichia coli KTE184]
gi|433094109|ref|ZP_20280357.1| tRNA modification GTPase mnmE [Escherichia coli KTE138]
gi|433195768|ref|ZP_20379736.1| tRNA modification GTPase mnmE [Escherichia coli KTE90]
gi|192930510|gb|EDV83117.1| tRNA modification GTPase TrmE [Escherichia coli E22]
gi|194413821|gb|EDX30099.1| tRNA modification GTPase TrmE [Escherichia coli B171]
gi|257761656|dbj|BAI33153.1| GTPase TrmE [Escherichia coli O103:H2 str. 12009]
gi|291321662|gb|EFE61098.1| tRNA modification GTPase TrmE [Escherichia coli B088]
gi|300531938|gb|EFK53000.1| tRNA modification GTPase TrmE [Escherichia coli MS 107-1]
gi|323161042|gb|EFZ46961.1| tRNA modification GTPase TrmE [Escherichia coli E128010]
gi|323182501|gb|EFZ67905.1| tRNA modification GTPase TrmE [Escherichia coli OK1357]
gi|324115941|gb|EGC09867.1| tRNA modification GTPase TrmE [Escherichia coli E1167]
gi|342930999|gb|EGU99721.1| tRNA modification GTPase TrmE [Escherichia coli MS 79-10]
gi|345334395|gb|EGW66839.1| tRNA modification GTPase TrmE [Escherichia coli STEC_B2F1]
gi|345373075|gb|EGX05037.1| tRNA modification GTPase TrmE [Escherichia coli STEC_H.1.8]
gi|378125373|gb|EHW86774.1| tRNA modification GTPase TrmE [Escherichia coli DEC11A]
gi|378138537|gb|EHW99791.1| tRNA modification GTPase TrmE [Escherichia coli DEC11B]
gi|378144516|gb|EHX05688.1| tRNA modification GTPase TrmE [Escherichia coli DEC11D]
gi|378146644|gb|EHX07795.1| tRNA modification GTPase TrmE [Escherichia coli DEC11C]
gi|378155687|gb|EHX16746.1| tRNA modification GTPase TrmE [Escherichia coli DEC11E]
gi|378160931|gb|EHX21916.1| tRNA modification GTPase TrmE [Escherichia coli DEC12B]
gi|378165347|gb|EHX26283.1| tRNA modification GTPase TrmE [Escherichia coli DEC12A]
gi|378165699|gb|EHX26630.1| tRNA modification GTPase TrmE [Escherichia coli DEC12C]
gi|378179218|gb|EHX39953.1| tRNA modification GTPase TrmE [Escherichia coli DEC12D]
gi|378183212|gb|EHX43858.1| tRNA modification GTPase TrmE [Escherichia coli DEC12E]
gi|386161582|gb|EIH23385.1| tRNA modification GTPase TrmE [Escherichia coli 1.2264]
gi|386165945|gb|EIH32465.1| tRNA modification GTPase TrmE [Escherichia coli 96.0497]
gi|386179646|gb|EIH57125.1| tRNA modification GTPase TrmE [Escherichia coli 3.2608]
gi|386219678|gb|EII36142.1| tRNA modification GTPase TrmE [Escherichia coli 4.0967]
gi|388334802|gb|EIL01384.1| tRNA modification GTPase TrmE [Escherichia coli O103:H2 str.
CVM9450]
gi|391309930|gb|EIQ67593.1| tRNA modification GTPase TrmE [Escherichia coli EPEC C342-62]
gi|397783126|gb|EJK93987.1| tRNA modification GTPase TrmE [Escherichia coli STEC_O31]
gi|431003434|gb|ELD18917.1| tRNA modification GTPase mnmE [Escherichia coli KTE210]
gi|431352816|gb|ELG39581.1| tRNA modification GTPase mnmE [Escherichia coli KTE91]
gi|431382274|gb|ELG66614.1| tRNA modification GTPase mnmE [Escherichia coli KTE135]
gi|431459582|gb|ELH39875.1| tRNA modification GTPase mnmE [Escherichia coli KTE184]
gi|431606833|gb|ELI76205.1| tRNA modification GTPase mnmE [Escherichia coli KTE138]
gi|431713040|gb|ELJ77299.1| tRNA modification GTPase mnmE [Escherichia coli KTE90]
Length = 454
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 167/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI-------- 181
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+ +EA ++ D I E L+ VR
Sbjct: 182 -------------------------------DFLSDGKIEAQLN---DVIAE---LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|397660750|ref|YP_006501452.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Klebsiella oxytoca
E718]
gi|394348732|gb|AFN34853.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Klebsiella oxytoca
E718]
Length = 454
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +++ K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFKDSDGSA-LDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSTRVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDANDEV 281
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG + +++ K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFKDS-DGSAL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118
>gi|375258119|ref|YP_005017289.1| tRNA modification GTPase TrmE [Klebsiella oxytoca KCTC 1686]
gi|365907597|gb|AEX03050.1| tRNA modification GTPase TrmE [Klebsiella oxytoca KCTC 1686]
Length = 454
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +++ K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFKDSDGSA-LDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSTRVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDANDEV 281
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG + +++ K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFKDS-DGSAL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118
>gi|190171350|gb|ACE63745.1| ThdF [Cronobacter turicensis]
Length = 439
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + +++ K+ K RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PG+R A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLSD 178
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 179 ---------GKIEAQL-------------------------------NEVIGD--LDAVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 273
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++RVSG + +++ K+PK RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P +++KP S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLN 110
>gi|259910299|ref|YP_002650655.1| tRNA modification GTPase TrmE [Erwinia pyrifoliae Ep1/96]
gi|224965921|emb|CAX57454.1| tRNA modification GTPase [Erwinia pyrifoliae Ep1/96]
Length = 454
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 122/336 (36%), Positives = 174/336 (51%), Gaps = 73/336 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRVSG----HKAAGVAQLLLGKLPKPRYADYLPFRD-ADGSTLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLAS----VEAYIDFSEDEIIEDN 274
DLI A +E + A++ ++G ++S ++E+L VEA IDF ++EI +
Sbjct: 130 ADLIDASSEQAARSAVNSLQG----VFSTRVNRLVEALTHLRIYVEAAIDFPDEEI---D 182
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
L+ + + QLH I+ L
Sbjct: 183 FLSDGKIE-AQLHQVIDS-----------------------------------------L 200
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
+ VRS+ Q GS+ +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 201 DAVRSEARQ--GSL-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVT 245
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 246 DIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++RVSG + +A K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRVSG----HKAAGVAQLLLGKLPKPRYADYLPFRD-ADGSTL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P +++ P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLN 118
>gi|190171240|gb|ACE63690.1| ThdF [Enterobacter sp. KM877_04]
Length = 439
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 123/332 (37%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKD-TDGTPLDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILMLPGLRIAKPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 178
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE L SV A +D VR
Sbjct: 179 ---------GKIEAQ--------------------LNSVMADLD-------------AVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q GS+ +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ--GSL-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 273
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++R+SG L A + +A K+PKPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKD-TDGTPLDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P +++KP S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILMLPGLRIAKPGEFSERAFLN 110
>gi|237729028|ref|ZP_04559509.1| tRNA modification GTPase TrmE [Citrobacter sp. 30_2]
gi|226909650|gb|EEH95568.1| tRNA modification GTPase TrmE [Citrobacter sp. 30_2]
Length = 454
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSALDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + + +I D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NSVISD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 281
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSAL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|190171346|gb|ACE63743.1| ThdF [Cronobacter turicensis]
gi|190171348|gb|ACE63744.1| ThdF [Cronobacter turicensis]
Length = 439
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + +++ K+ K RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PG+R A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLSD 178
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 179 ---------GKIEAQL-------------------------------NEVIGD--LDAVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 273
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++RVSG + +++ K+PK RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P +++KP S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLN 110
>gi|260595826|ref|YP_003208397.1| tRNA modification GTPase TrmE [Cronobacter turicensis z3032]
gi|260215003|emb|CBA26661.1| tRNA modification GTPase mnmE [Cronobacter turicensis z3032]
Length = 454
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + +++ K+ K RYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PG+R A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NEVIGD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++RVSG + +++ K+PK RYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTAL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P +++KP S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLN 118
>gi|190171242|gb|ACE63691.1| ThdF [Enterobacter sp. OD1121_04]
Length = 439
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 123/332 (37%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKD-TDGTPLDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 177
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE L SV A +D VR
Sbjct: 178 --------DGKIEAQ--------------------LNSVMADLD-------------AVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q GS+ +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ--GSL-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 273
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++R+SG L A + +A K+PKPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKD-TDGTPLDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P +++KP S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLN 110
>gi|190171352|gb|ACE63746.1| ThdF [Cronobacter turicensis]
Length = 439
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + +++ K+ K RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PG+R A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLSD 178
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 179 ---------GKIEAQL-------------------------------NEVIGD--LDAVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 273
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++RVSG + +++ K+PK RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P +++KP S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLN 110
>gi|421846895|ref|ZP_16280039.1| tRNA modification GTPase TrmE [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|411771770|gb|EKS55430.1| tRNA modification GTPase TrmE [Citrobacter freundii ATCC 8090 =
MTCC 1658]
Length = 454
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSTLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + + +I D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NNVISD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 281
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSTL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|405376999|ref|ZP_11030948.1| tRNA modification GTPase TrmE [Rhizobium sp. CF142]
gi|397326552|gb|EJJ30868.1| tRNA modification GTPase TrmE [Rhizobium sp. CF142]
Length = 440
Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 126/335 (37%), Positives = 172/335 (51%), Gaps = 65/335 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GVSV+RVSGP T L+++ + PR A+ R I + +D GL L+FP P
Sbjct: 18 SGVSVVRVSGPQTCLILEALVG----GIPSPRTAAYRTI-RTRNGFPIDAGLVLFFPGPA 72
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGED EFQVHGS AVI+A+ L G R A GEFS+RAF N KLDL + E L D
Sbjct: 73 SFTGEDSAEFQVHGSKAVISALSRELAMFSGTRLATEGEFSRRAFENGKLDLVEVEGLAD 132
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI AETE+Q R+L LE +
Sbjct: 133 LIAAETEMQ-------------------RRLALEQSSG---------------------- 151
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
+ +L+ S + I S A +EA +DF +++ I ++ + +
Sbjct: 152 -GLSRLYDSWAERITRSR----------------ALIEAELDFPDEDDIPGSVSDQIWIS 194
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
+ +L +E H+ + + G +R G K VI G PN GKSSLMN+ Q+ ++IVT I GTT
Sbjct: 195 LAELRREMEDHLSHA-EMGEIVRDGFKVVIAGAPNAGKSSLMNWFAQRDVAIVTDIAGTT 253
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
RDV+ +++ GY V L DTAGLR T+DI+E EG
Sbjct: 254 RDVLHVDINLNGYLVKLYDTAGLR-DTADIVEQEG 287
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFALSSG GVSV+RVSGP T L+++ +P PR A+ R I + +
Sbjct: 6 DTIFALSSGTPPSGVSVVRVSGPQTCLILEALVG----GIPSPRTAAYRTI-RTRNGFPI 60
Query: 88 DEGLCLWFP 96
D GL L+FP
Sbjct: 61 DAGLVLFFP 69
>gi|395230773|ref|ZP_10409073.1| tRNA modification GTPase mnmE [Citrobacter sp. A1]
gi|424729085|ref|ZP_18157688.1| trna modification gtpase [Citrobacter sp. L17]
gi|394715534|gb|EJF21348.1| tRNA modification GTPase mnmE [Citrobacter sp. A1]
gi|422896193|gb|EKU35976.1| trna modification gtpase [Citrobacter sp. L17]
Length = 454
Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSTLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + + +I D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NSVISD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 281
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSTL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|365102345|ref|ZP_09332646.1| tRNA modification GTPase mnmE [Citrobacter freundii 4_7_47CFAA]
gi|363646073|gb|EHL85321.1| tRNA modification GTPase mnmE [Citrobacter freundii 4_7_47CFAA]
Length = 454
Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSALDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + + +I D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NSVISD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 281
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSAL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|299133195|ref|ZP_07026390.1| tRNA modification GTPase TrmE [Afipia sp. 1NLS2]
gi|298593332|gb|EFI53532.1| tRNA modification GTPase TrmE [Afipia sp. 1NLS2]
Length = 439
Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 119/334 (35%), Positives = 174/334 (52%), Gaps = 67/334 (20%)
Query: 103 VSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSF 162
++++RVSGP L+S+ C ++ +PR A+L + P + + D+ + LWFP P+S
Sbjct: 20 IAIVRVSGPRAAATLESL-C---GRLPRPRTATLTTLTSPETGPI-DQAVALWFPAPHSA 74
Query: 163 TGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLI 222
TGED EFQ+HG AVI A+ AL K+ GLRPAEPGEF++RAF N KL DL
Sbjct: 75 TGEDVAEFQLHGGRAVIAALFAALGKIEGLRPAEPGEFTRRAFENGKL---------DLT 125
Query: 223 QAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQ 282
+AE D++I + R
Sbjct: 126 EAE----------------------------------------GLDDLIHADTDRQRRQA 145
Query: 283 VVQLHGSIEKHIELSNKCGVRIRSGIKSVI-CLASVEAYIDFSEDEIIEDNILNTVRSQV 341
+ L G + G R ++ K +I +A VEA IDFS++ + ++ +V
Sbjct: 146 LRHLQGLL----------GHRAQTWRKQIIEAMALVEAGIDFSDEGDVSAELMAPAMQRV 195
Query: 342 VQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTR 401
L I++ + S + R+R G++ I G PN GKS+L+N L +++ +IV+ GTTR
Sbjct: 196 AALKSEIQEILAASAQS-ERLREGLQVAIAGPPNAGKSTLLNRLARREAAIVSPYAGTTR 254
Query: 402 DVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
DVIE HLD+ GYPV L+DTAGLR T+D +E EG
Sbjct: 255 DVIEVHLDLDGYPVTLIDTAGLR-ETNDPVEQEG 287
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TI+AL+SG ++++RVSGP L+S+ C ++P+PR A+L + P + + D
Sbjct: 7 TIYALASGRPPSAIAIVRVSGPRAAATLESL-C---GRLPRPRTATLTTLTSPETGPI-D 61
Query: 89 EGLCLWFPR-HGKCGVSV 105
+ + LWFP H G V
Sbjct: 62 QAVALWFPAPHSATGEDV 79
>gi|455645341|gb|EMF24401.1| tRNA modification GTPase TrmE [Citrobacter freundii GTC 09479]
Length = 454
Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSTLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + + +I D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NSVISD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 281
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSTL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|224012297|ref|XP_002294801.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|224013676|ref|XP_002296502.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968854|gb|EED87198.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969240|gb|EED87581.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 472
Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 118/315 (37%), Positives = 166/315 (52%), Gaps = 66/315 (20%)
Query: 132 RYASLRNIVDPVSEVV----------------LDEGLCLWFPKPNSFTGEDCCEFQVHGS 175
R ASLR + DP ++ LD L L F PNSFTGED E HGS
Sbjct: 5 RMASLRTLYDPTADAKGTSDDEEEMQQQKRDPLDSALVLTFEGPNSFTGEDIVELHCHGS 64
Query: 176 IAVINAILGALT-----KLP-GLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQ 229
AV++ +L AL+ +P LRPA+PGEF++RA+ + KL L + EAL DLI A+T LQ
Sbjct: 65 RAVVHGVLSALSSLSSRAIPLQLRPADPGEFTQRAYAHGKLGLVEVEALADLIVADTSLQ 124
Query: 230 RQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGS 289
R++AL Q G L +LY WR+ +++ LA EA IDF +DE +
Sbjct: 125 RKQALQQFDGRLSRLYGGWREELIKGLAHAEAVIDFGDDE-------------------A 165
Query: 290 IEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIE 349
++ H E + G+ G S I T+ ++ L ++
Sbjct: 166 LDAHDEFDD--GLNANDGGMS----------------------IWGTIAPRIRSLRQAMN 201
Query: 350 KHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLD 409
+H+ +++ G +R G++ IVG PN GKSSL+N L + +IV+S PGTTRDV+E LD
Sbjct: 202 RHLADASR-GELLRDGLRIAIVGRPNAGKSSLLNLLAGRDAAIVSSSPGTTRDVVEVMLD 260
Query: 410 IGGYPVILLDTAGLR 424
+GG LLDTAG+R
Sbjct: 261 LGGVRCTLLDTAGVR 275
>gi|429102541|ref|ZP_19164515.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
turicensis 564]
gi|426289190|emb|CCJ90628.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
turicensis 564]
Length = 454
Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + +++ K+ K RYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PG+R A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NEVIGD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 104/248 (41%), Gaps = 21/248 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++RVSG + +++ K+PK RYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTAL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVDP 142
D+G+ LWFP + G V+ + GP L+ LK + P +++KP S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLND 119
Query: 143 VSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGL------RPAE 196
++ E + + A +N ++ ALT L P E
Sbjct: 120 KLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDE 179
Query: 197 PGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQ-MKGNLKQLYSEWRQLILES 255
+F + K++ E +GDL E ++ L + MK + + + +L +
Sbjct: 180 EIDF----LSDGKIEAQLNEVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNA 235
Query: 256 LASVEAYI 263
LA EA I
Sbjct: 236 LAGREAAI 243
>gi|190171172|gb|ACE63656.1| ThdF [Citrobacter sp. OD1158_06]
Length = 439
Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKDEDGSA-LDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 177
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + + +I D L+ VR
Sbjct: 178 --------DGKIEAQL-------------------------------NSVISD--LDAVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 273
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++R+SG L A + +A K+PKPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKDE-DGSALDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 110
>gi|365972831|ref|YP_004954392.1| tRNA modification GTPase mnmE [Enterobacter cloacae EcWSU1]
gi|365751744|gb|AEW75971.1| tRNA modification GTPase mnmE [Enterobacter cloacae EcWSU1]
Length = 454
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 123/332 (37%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKD-TDGTPLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE L SV A +D VR
Sbjct: 187 ---------GKIEAQ--------------------LNSVMADLD-------------AVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q GS+ +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ--GSL-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 281
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKD-TDGTPL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P +++KP S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLN 118
>gi|417185433|ref|ZP_12010834.1| tRNA modification GTPase TrmE [Escherichia coli 93.0624]
gi|386182733|gb|EIH65489.1| tRNA modification GTPase TrmE [Escherichia coli 93.0624]
Length = 454
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 167/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVLDQGITLWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI-------- 181
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+ +EA ++ D I E L+ VR
Sbjct: 182 -------------------------------DFLSDGKIEAQLN---DVIAE---LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGITLWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|260753419|ref|YP_003226312.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|258552782|gb|ACV75728.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 434
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 121/337 (35%), Positives = 163/337 (48%), Gaps = 64/337 (18%)
Query: 101 CGVSVIRVSGPDTLNALKSMACY-PDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKP 159
G++VIR+SG +A AC +K+ + R A LRN+ DP S LD+ L LW P P
Sbjct: 14 AGIAVIRISG----SAAADTACLLTRKKIPEARRAVLRNLYDPDSGEQLDQSLLLWLPAP 69
Query: 160 NSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALG 219
+ TGED E VHG AVI+A+L L KLP LRPAE GEF++RAF N + L + E LG
Sbjct: 70 KTVTGEDLLELHVHGGRAVIDAVLKTLEKLPDLRPAEAGEFTRRAFENGVISLHEAEGLG 129
Query: 220 DLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTV 279
DL+ AET QR+ AL G L Q S W+ +L
Sbjct: 130 DLLTAETASQRRAALMMSGGALGQQISAWQDRLL-------------------------- 163
Query: 280 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRS 339
L G IE + + D EDE L ++
Sbjct: 164 -----ALSGQIEASFDFAE-----------------------DIEEDETESRQHLAVMKD 195
Query: 340 QVVQLHGSIEKHIELSNKCGV-RIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ L I +H + N+ + R+R G++ V+ G PN GKS+L+N L + I+I I G
Sbjct: 196 KIAAL---IAEHRQFENRPTMERLRDGLRVVLAGRPNAGKSTLINALTGQDIAITAPIAG 252
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE + G P+ DTAGL + D+IE G
Sbjct: 253 TTRDVIEVSFALKGIPMRFSDTAGLH-ESDDLIEKAG 288
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACY-PDQKVPKPRYASLRNIVDPVSKVV 86
TIFALSSG G++VIR+SG +A AC +K+P+ R A LRN+ DP S
Sbjct: 2 KTIFALSSGRPPAGIAVIRISG----SAAADTACLLTRKKIPEARRAVLRNLYDPDSGEQ 57
Query: 87 LDEGLCLWFP 96
LD+ L LW P
Sbjct: 58 LDQSLLLWLP 67
>gi|397168838|ref|ZP_10492274.1| tRNA modification GTPase TrmE [Alishewanella aestuarii B11]
gi|396089425|gb|EJI86999.1| tRNA modification GTPase TrmE [Alishewanella aestuarii B11]
Length = 465
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IR+SGP T K++A K+ K RYA ++ +LD+G+ L+FP
Sbjct: 26 GRAGVGIIRISGPAT----KAVANAILHKLPKSRYAEYLPFY-AANKQILDQGIALYFPG 80
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + P +R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 81 PNSFTGEDVLELQGHGGPVLLDMLLKQVLAQPNVRIARPGEFSERAFLNDKLDLAQAEAI 140
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + A+ ++G + + + ++ VEA IDF ++EI
Sbjct: 141 ADLIDASSEQAARSAMQSLQGEFSKRIHQLVEKVIHLRMYVEAAIDFPDEEI-------- 192
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
L+ + D +E II+D L VR
Sbjct: 193 ---------------------------------DFLSDGKVAADLAE--IIDD--LAQVR 215
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
Q Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 216 KQATQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTEIAG 260
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T +
Sbjct: 261 TTRDVLREHIHIDGMPLHIIDTAGLRDTEDQV 292
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI AL++ G+ GV +IR+SGP T K++A K+PK RYA +K +L
Sbjct: 16 DTIAALATAPGRAGVGIIRISGPAT----KAVANAILHKLPKSRYAEYLPFY-AANKQIL 70
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLNA-LKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ L+FP + G V+ + GP L+ LK + P+ ++++P S R ++
Sbjct: 71 DQGIALYFPGPNSFTGEDVLELQGHGGPVLLDMLLKQVLAQPNVRIARPGEFSERAFLN 129
>gi|387873321|ref|YP_005804710.1| tRNA modification GTPase trmE [Erwinia pyrifoliae DSM 12163]
gi|283480423|emb|CAY76339.1| tRNA modification GTPase trmE [Erwinia pyrifoliae DSM 12163]
Length = 467
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 121/336 (36%), Positives = 173/336 (51%), Gaps = 73/336 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + + K+ KPRYA D LD+G+ LWFP
Sbjct: 28 GRGGVGILRVSGHKAAGVAQLLLG----KLPKPRYADYLPFRD-ADGSTLDQGIALWFPG 82
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 83 PNSFTGEDVLELQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLNDKLDLAQAEAI 142
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLAS----VEAYIDFSEDEIIEDN 274
DLI A +E + A++ ++G ++S ++E+L VEA IDF ++EI +
Sbjct: 143 ADLIDASSEQAARSAVNSLQG----VFSTRVNRLVEALTHLRIYVEAAIDFPDEEI---D 195
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
L+ + + QLH I+ L
Sbjct: 196 FLSDGKIE-AQLHQVIDS-----------------------------------------L 213
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
+ VRS+ Q GS+ +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 214 DAVRSEARQ--GSL-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVT 258
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 259 DIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 294
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 13 AVIFFSRRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRY 72
A+ F +R ++ +TI A ++ G+ GV ++RVSG + + K+PKPRY
Sbjct: 3 ALFFCIKREFNMNHSDTIVAQATPPGRGGVGILRVSGHKAAGVAQLLLG----KLPKPRY 58
Query: 73 ASLRNIVDPVSKVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQK 127
A D LD+G+ LWFP + G V+ + GP L+ LK + P +
Sbjct: 59 ADYLPFRD-ADGSTLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILSLPGLR 117
Query: 128 VSKPRYASLRNIVD 141
++ P S R ++
Sbjct: 118 IANPGEFSERAFLN 131
>gi|260912765|ref|ZP_05919251.1| tRNA modification GTPase TrmE [Pasteurella dagmatis ATCC 43325]
gi|260633143|gb|EEX51308.1| tRNA modification GTPase TrmE [Pasteurella dagmatis ATCC 43325]
Length = 476
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++RVSGP + ++ K KPR A D + VLD+G+ L+F
Sbjct: 37 GRGGIGILRVSGPKAVEVANTVLG----KCPKPRMADYLPFKD-LDGTVLDQGIALYFKA 91
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L + ++ G+R A PGEFS++AF N+KLDL Q EA+
Sbjct: 92 PNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLDLAQAEAI 151
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G ++ ++ VEA IDF ++EI D + +
Sbjct: 152 ADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEEI--DFLAD- 208
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE H+ ++IIE LN VR
Sbjct: 209 ---------GKIEAHL-------------------------------NDIIEQ--LNKVR 226
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S+ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 227 SEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 271
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T ++
Sbjct: 272 TTRDVLREHIHIDGMPLHIIDTAGLREATDEV 303
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP + ++ K PKPR A D +
Sbjct: 25 MKETIVAQATAPGRGGIGILRVSGPKAVEVANTVLG----KCPKPRMADYLPFKD-LDGT 79
Query: 86 VLDEGLCLWF 95
VLD+G+ L+F
Sbjct: 80 VLDQGIALYF 89
>gi|190171222|gb|ACE63681.1| ThdF [Enterobacter ludwigii]
Length = 439
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKD-TDGTPLDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGMRIAKPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 177
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE L SV A +D VR
Sbjct: 178 --------DGKIEAQ--------------------LNSVMADLD-------------AVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q GS+ +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ--GSL-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 273
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++R+SG L A + +A K+PKPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKD-TDGTPLDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P +++KP S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGMRIAKPGEFSERAFLN 110
>gi|37528711|ref|NP_932056.1| tRNA modification GTPase TrmE [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|46577344|sp|Q7MAX1.1|MNME_PHOLL RecName: Full=tRNA modification GTPase MnmE
gi|36788150|emb|CAE17277.1| tRNA modification GTPase TrmE [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 454
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSGP + + K+ KPRYA D V +LD+G+ ++FP
Sbjct: 15 GRGGVGILRVSGPKAAQVAEVVLG----KLPKPRYADYLPFRD-VDGQILDQGIAIYFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + L G+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLSGVRIANPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + A++ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSAMNSLQGAFSTQVHQMVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + DE+I + L VR
Sbjct: 186 --------DGKIEAKL-------------------------------DEVIVE--LERVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
SQ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 SQARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++RVSGP + + K+PKPRYA D V +L
Sbjct: 5 DTIVAQATPPGRGGVGILRVSGPKAAQVAEVVLG----KLPKPRYADYLPFRD-VDGQIL 59
Query: 88 DEGLCLWFP 96
D+G+ ++FP
Sbjct: 60 DQGIAIYFP 68
>gi|260870437|ref|YP_003236839.1| GTPase TrmE [Escherichia coli O111:H- str. 11128]
gi|415821757|ref|ZP_11510538.1| tRNA modification GTPase TrmE [Escherichia coli OK1180]
gi|417202027|ref|ZP_12018277.1| tRNA modification GTPase TrmE [Escherichia coli 4.0522]
gi|417209887|ref|ZP_12020989.1| tRNA modification GTPase TrmE [Escherichia coli JB1-95]
gi|417594171|ref|ZP_12244857.1| tRNA modification GTPase TrmE [Escherichia coli 2534-86]
gi|419199487|ref|ZP_13742776.1| tRNA modification GTPase TrmE [Escherichia coli DEC8A]
gi|419205760|ref|ZP_13748915.1| tRNA modification GTPase TrmE [Escherichia coli DEC8B]
gi|419223895|ref|ZP_13766805.1| tRNA modification GTPase TrmE [Escherichia coli DEC8E]
gi|419890116|ref|ZP_14410424.1| tRNA modification GTPase TrmE [Escherichia coli O111:H8 str.
CVM9570]
gi|419898294|ref|ZP_14417854.1| tRNA modification GTPase TrmE [Escherichia coli O111:H8 str.
CVM9574]
gi|420091569|ref|ZP_14603314.1| tRNA modification GTPase TrmE [Escherichia coli O111:H8 str.
CVM9602]
gi|420097225|ref|ZP_14608528.1| tRNA modification GTPase TrmE [Escherichia coli O111:H8 str.
CVM9634]
gi|424773434|ref|ZP_18200494.1| tRNA modification GTPase TrmE [Escherichia coli O111:H8 str.
CFSAN001632]
gi|257766793|dbj|BAI38288.1| GTPase TrmE [Escherichia coli O111:H- str. 11128]
gi|323177718|gb|EFZ63302.1| tRNA modification GTPase TrmE [Escherichia coli OK1180]
gi|345331278|gb|EGW63738.1| tRNA modification GTPase TrmE [Escherichia coli 2534-86]
gi|378043555|gb|EHW05990.1| tRNA modification GTPase TrmE [Escherichia coli DEC8A]
gi|378043771|gb|EHW06201.1| tRNA modification GTPase TrmE [Escherichia coli DEC8B]
gi|378061596|gb|EHW23780.1| tRNA modification GTPase TrmE [Escherichia coli DEC8E]
gi|386186914|gb|EIH75737.1| tRNA modification GTPase TrmE [Escherichia coli 4.0522]
gi|386195940|gb|EIH90168.1| tRNA modification GTPase TrmE [Escherichia coli JB1-95]
gi|388353922|gb|EIL18886.1| tRNA modification GTPase TrmE [Escherichia coli O111:H8 str.
CVM9574]
gi|388355679|gb|EIL20502.1| tRNA modification GTPase TrmE [Escherichia coli O111:H8 str.
CVM9570]
gi|394382823|gb|EJE60439.1| tRNA modification GTPase TrmE [Escherichia coli O111:H8 str.
CVM9602]
gi|394384757|gb|EJE62310.1| tRNA modification GTPase TrmE [Escherichia coli O111:H8 str.
CVM9634]
gi|421936203|gb|EKT93870.1| tRNA modification GTPase TrmE [Escherichia coli O111:H8 str.
CFSAN001632]
Length = 454
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D + VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ANGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF +KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLYDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 10/109 (9%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D + VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ANGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKP 131
D+G+ LWFP + G V+ + GP L+ LK + P ++++P
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARP 108
>gi|218707353|ref|YP_002414872.1| tRNA modification GTPase TrmE [Escherichia coli UMN026]
gi|293407346|ref|ZP_06651268.1| tRNA modification GTPase mnmE [Escherichia coli FVEC1412]
gi|298383087|ref|ZP_06992682.1| tRNA modification GTPase mnmE [Escherichia coli FVEC1302]
gi|417588856|ref|ZP_12239618.1| tRNA modification GTPase TrmE [Escherichia coli STEC_C165-02]
gi|419934272|ref|ZP_14451411.1| tRNA modification GTPase TrmE [Escherichia coli 576-1]
gi|432355753|ref|ZP_19599014.1| tRNA modification GTPase mnmE [Escherichia coli KTE2]
gi|432404120|ref|ZP_19646863.1| tRNA modification GTPase mnmE [Escherichia coli KTE26]
gi|432428388|ref|ZP_19670868.1| tRNA modification GTPase mnmE [Escherichia coli KTE181]
gi|432463087|ref|ZP_19705218.1| tRNA modification GTPase mnmE [Escherichia coli KTE204]
gi|432478082|ref|ZP_19720067.1| tRNA modification GTPase mnmE [Escherichia coli KTE208]
gi|432519936|ref|ZP_19757115.1| tRNA modification GTPase mnmE [Escherichia coli KTE228]
gi|432540103|ref|ZP_19776993.1| tRNA modification GTPase mnmE [Escherichia coli KTE235]
gi|432633668|ref|ZP_19869585.1| tRNA modification GTPase mnmE [Escherichia coli KTE80]
gi|432643320|ref|ZP_19879141.1| tRNA modification GTPase mnmE [Escherichia coli KTE83]
gi|432668313|ref|ZP_19903882.1| tRNA modification GTPase mnmE [Escherichia coli KTE116]
gi|432772495|ref|ZP_20006806.1| tRNA modification GTPase mnmE [Escherichia coli KTE54]
gi|432889455|ref|ZP_20102792.1| tRNA modification GTPase mnmE [Escherichia coli KTE158]
gi|432915390|ref|ZP_20120645.1| tRNA modification GTPase mnmE [Escherichia coli KTE190]
gi|433020976|ref|ZP_20209053.1| tRNA modification GTPase mnmE [Escherichia coli KTE105]
gi|433055347|ref|ZP_20242501.1| tRNA modification GTPase mnmE [Escherichia coli KTE122]
gi|433070084|ref|ZP_20256847.1| tRNA modification GTPase mnmE [Escherichia coli KTE128]
gi|433160877|ref|ZP_20345691.1| tRNA modification GTPase mnmE [Escherichia coli KTE177]
gi|433180594|ref|ZP_20364966.1| tRNA modification GTPase mnmE [Escherichia coli KTE82]
gi|254811482|sp|B7NF24.1|MNME_ECOLU RecName: Full=tRNA modification GTPase MnmE
gi|218434450|emb|CAR15378.1| GTPase [Escherichia coli UMN026]
gi|291425637|gb|EFE98673.1| tRNA modification GTPase mnmE [Escherichia coli FVEC1412]
gi|298276923|gb|EFI18441.1| tRNA modification GTPase mnmE [Escherichia coli FVEC1302]
gi|345331855|gb|EGW64314.1| tRNA modification GTPase TrmE [Escherichia coli STEC_C165-02]
gi|388409442|gb|EIL69733.1| tRNA modification GTPase TrmE [Escherichia coli 576-1]
gi|430872169|gb|ELB95784.1| tRNA modification GTPase mnmE [Escherichia coli KTE2]
gi|430922625|gb|ELC43373.1| tRNA modification GTPase mnmE [Escherichia coli KTE26]
gi|430950617|gb|ELC69846.1| tRNA modification GTPase mnmE [Escherichia coli KTE181]
gi|430985472|gb|ELD02072.1| tRNA modification GTPase mnmE [Escherichia coli KTE204]
gi|431001939|gb|ELD17509.1| tRNA modification GTPase mnmE [Escherichia coli KTE208]
gi|431048188|gb|ELD58173.1| tRNA modification GTPase mnmE [Escherichia coli KTE228]
gi|431066594|gb|ELD75218.1| tRNA modification GTPase mnmE [Escherichia coli KTE235]
gi|431167052|gb|ELE67352.1| tRNA modification GTPase mnmE [Escherichia coli KTE80]
gi|431177169|gb|ELE77105.1| tRNA modification GTPase mnmE [Escherichia coli KTE83]
gi|431197358|gb|ELE96210.1| tRNA modification GTPase mnmE [Escherichia coli KTE116]
gi|431323382|gb|ELG10880.1| tRNA modification GTPase mnmE [Escherichia coli KTE54]
gi|431413337|gb|ELG96127.1| tRNA modification GTPase mnmE [Escherichia coli KTE158]
gi|431434992|gb|ELH16605.1| tRNA modification GTPase mnmE [Escherichia coli KTE190]
gi|431526675|gb|ELI03418.1| tRNA modification GTPase mnmE [Escherichia coli KTE105]
gi|431565522|gb|ELI38603.1| tRNA modification GTPase mnmE [Escherichia coli KTE122]
gi|431578441|gb|ELI51044.1| tRNA modification GTPase mnmE [Escherichia coli KTE128]
gi|431673272|gb|ELJ39499.1| tRNA modification GTPase mnmE [Escherichia coli KTE177]
gi|431697693|gb|ELJ62791.1| tRNA modification GTPase mnmE [Escherichia coli KTE82]
Length = 454
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 171/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +P LR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPDLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + PD ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPDLRIARPGEFSERAFLN 118
>gi|190171224|gb|ACE63682.1| ThdF [Enterobacter pulveris]
gi|190171234|gb|ACE63687.1| ThdF [Enterobacter pulveris]
Length = 439
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +++ K+ KPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISGKLARDVAQAVLG----KLPKPRYADYLPFKDS-DNTPLDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLS- 177
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + + +I D L+ VR
Sbjct: 178 --------DGKIEAQL-------------------------------NTVIAD--LDAVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 273
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++R+SG + +++ K+PKPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISGKLARDVAQAVLG----KLPKPRYADYLPFKDS-DNTPLDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 110
>gi|213405481|ref|XP_002173512.1| tRNA modification GTPase mss1 [Schizosaccharomyces japonicus
yFS275]
gi|212001559|gb|EEB07219.1| tRNA modification GTPase mss1 [Schizosaccharomyces japonicus
yFS275]
Length = 501
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 121/349 (34%), Positives = 171/349 (48%), Gaps = 74/349 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK V+VIRVSGP K++ V KPR A+L ++ P ++ +D L L+FP
Sbjct: 39 GKAAVAVIRVSGPQASEVAKTLCG----SVPKPRMATLLRLLHPKTKRQIDRALVLFFPG 94
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGAL--TKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P SFTGED EF HG V+ L A+ T+LP LR AE GEFSK+AF+N K+DL Q E
Sbjct: 95 PASFTGEDTIEFHTHGGSGVVQETLTAIAETRLPALRYAERGEFSKQAFYNGKMDLLQLE 154
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
+L D+I AET Q A + ++ S+WR D I+E
Sbjct: 155 SLADVIDAETAEQVYLANEDIDTQTRKRVSQWR------------------DTILE---- 192
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDN---- 332
C A +E +DFSE+ +E++
Sbjct: 193 ------------------------------------CRALLETLLDFSEEHSVEEDFSRA 216
Query: 333 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
+L+ RS + +H ++ + R G ++V+ G N GKSSL+N L ++Q+++
Sbjct: 217 VLDKTRSLLNDMHS-----FQIRQRTREAFRFGTQAVLFGPTNAGKSSLVNSLARRQVAL 271
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR-TTTSDIIETEGNLLEK 440
V+ PGTTRD ++ L+I GYPV L DTAGLR S +E G L K
Sbjct: 272 VSDEPGTTRDALQVQLNIHGYPVWLSDTAGLRHHNVSSAVEAAGIQLAK 320
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
K+T++ALS+ GK V+VIRVSGP K++ VPKPR A+L ++ P +K
Sbjct: 28 KHTVYALSTAPGKAAVAVIRVSGPQASEVAKTLCG----SVPKPRMATLLRLLHPKTKRQ 83
Query: 87 LDEGLCLWFP 96
+D L L+FP
Sbjct: 84 IDRALVLFFP 93
>gi|300896036|ref|ZP_07114596.1| tRNA modification GTPase TrmE, partial [Escherichia coli MS 198-1]
gi|300360060|gb|EFJ75930.1| tRNA modification GTPase TrmE [Escherichia coli MS 198-1]
Length = 462
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 171/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 23 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +P LR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 78 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPDLRIARPGEFSERAFLNDKLDLAQAEAI 137
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 138 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 193
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 194 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 212
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 213 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 257
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 258 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 289
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 13 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVL 67
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + PD ++++P S R ++
Sbjct: 68 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPDLRIARPGEFSERAFLN 126
>gi|193069233|ref|ZP_03050190.1| tRNA modification GTPase TrmE [Escherichia coli E110019]
gi|260857883|ref|YP_003231774.1| tRNA modification GTPase TrmE [Escherichia coli O26:H11 str. 11368]
gi|415785869|ref|ZP_11493220.1| tRNA modification GTPase TrmE [Escherichia coli EPECa14]
gi|417297259|ref|ZP_12084506.1| tRNA modification GTPase TrmE [Escherichia coli 900105 (10e)]
gi|419212230|ref|ZP_13755293.1| tRNA modification GTPase TrmE [Escherichia coli DEC8C]
gi|419216786|ref|ZP_13759785.1| tRNA modification GTPase TrmE [Escherichia coli DEC8D]
gi|419229380|ref|ZP_13772214.1| tRNA modification GTPase TrmE [Escherichia coli DEC9A]
gi|419234891|ref|ZP_13777655.1| tRNA modification GTPase TrmE [Escherichia coli DEC9B]
gi|419240244|ref|ZP_13782946.1| tRNA modification GTPase TrmE [Escherichia coli DEC9C]
gi|419245807|ref|ZP_13788437.1| tRNA modification GTPase TrmE [Escherichia coli DEC9D]
gi|419251607|ref|ZP_13794171.1| tRNA modification GTPase TrmE [Escherichia coli DEC9E]
gi|419257496|ref|ZP_13799992.1| tRNA modification GTPase TrmE [Escherichia coli DEC10A]
gi|419263622|ref|ZP_13806025.1| tRNA modification GTPase TrmE [Escherichia coli DEC10B]
gi|419269662|ref|ZP_13812002.1| tRNA modification GTPase TrmE [Escherichia coli DEC10C]
gi|419275011|ref|ZP_13817296.1| tRNA modification GTPase TrmE [Escherichia coli DEC10D]
gi|419286723|ref|ZP_13828881.1| tRNA modification GTPase TrmE [Escherichia coli DEC10F]
gi|419874535|ref|ZP_14396460.1| tRNA modification GTPase TrmE [Escherichia coli O111:H11 str.
CVM9534]
gi|419881573|ref|ZP_14402893.1| tRNA modification GTPase TrmE [Escherichia coli O111:H11 str.
CVM9545]
gi|419899343|ref|ZP_14418857.1| tRNA modification GTPase TrmE [Escherichia coli O26:H11 str.
CVM9942]
gi|419910965|ref|ZP_14429470.1| hypothetical protein ECO10026_26253 [Escherichia coli O26:H11 str.
CVM10026]
gi|420099603|ref|ZP_14610826.1| tRNA modification GTPase TrmE [Escherichia coli O111:H11 str.
CVM9455]
gi|420106568|ref|ZP_14616967.1| tRNA modification GTPase TrmE [Escherichia coli O111:H11 str.
CVM9553]
gi|420112528|ref|ZP_14622326.1| tRNA modification GTPase TrmE [Escherichia coli O26:H11 str.
CVM10021]
gi|420124363|ref|ZP_14633222.1| tRNA modification GTPase TrmE [Escherichia coli O26:H11 str.
CVM10030]
gi|420125236|ref|ZP_14634060.1| tRNA modification GTPase TrmE [Escherichia coli O26:H11 str.
CVM10224]
gi|420135530|ref|ZP_14643613.1| tRNA modification GTPase TrmE [Escherichia coli O26:H11 str.
CVM9952]
gi|424752870|ref|ZP_18180838.1| tRNA modification GTPase TrmE [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424758781|ref|ZP_18186457.1| tRNA modification GTPase TrmE [Escherichia coli O111:H11 str.
CFSAN001630]
gi|425382047|ref|ZP_18766030.1| tRNA modification GTPase TrmE [Escherichia coli EC1865]
gi|432676881|ref|ZP_19912323.1| tRNA modification GTPase mnmE [Escherichia coli KTE142]
gi|192957557|gb|EDV88003.1| tRNA modification GTPase TrmE [Escherichia coli E110019]
gi|257756532|dbj|BAI28034.1| GTPase TrmE [Escherichia coli O26:H11 str. 11368]
gi|323155383|gb|EFZ41566.1| tRNA modification GTPase TrmE [Escherichia coli EPECa14]
gi|378049022|gb|EHW11373.1| tRNA modification GTPase TrmE [Escherichia coli DEC8C]
gi|378060977|gb|EHW23165.1| tRNA modification GTPase TrmE [Escherichia coli DEC8D]
gi|378068261|gb|EHW30364.1| tRNA modification GTPase TrmE [Escherichia coli DEC9A]
gi|378073581|gb|EHW35627.1| tRNA modification GTPase TrmE [Escherichia coli DEC9B]
gi|378079319|gb|EHW41296.1| tRNA modification GTPase TrmE [Escherichia coli DEC9C]
gi|378086944|gb|EHW48814.1| tRNA modification GTPase TrmE [Escherichia coli DEC9D]
gi|378089290|gb|EHW51133.1| tRNA modification GTPase TrmE [Escherichia coli DEC9E]
gi|378096277|gb|EHW58048.1| tRNA modification GTPase TrmE [Escherichia coli DEC10A]
gi|378101557|gb|EHW63242.1| tRNA modification GTPase TrmE [Escherichia coli DEC10B]
gi|378106355|gb|EHW67984.1| tRNA modification GTPase TrmE [Escherichia coli DEC10C]
gi|378112623|gb|EHW74197.1| tRNA modification GTPase TrmE [Escherichia coli DEC10D]
gi|378124736|gb|EHW86140.1| tRNA modification GTPase TrmE [Escherichia coli DEC10F]
gi|386260703|gb|EIJ16177.1| tRNA modification GTPase TrmE [Escherichia coli 900105 (10e)]
gi|388350857|gb|EIL16173.1| tRNA modification GTPase TrmE [Escherichia coli O111:H11 str.
CVM9534]
gi|388364960|gb|EIL28774.1| tRNA modification GTPase TrmE [Escherichia coli O111:H11 str.
CVM9545]
gi|388370489|gb|EIL34015.1| hypothetical protein ECO10026_26253 [Escherichia coli O26:H11 str.
CVM10026]
gi|388380067|gb|EIL42692.1| tRNA modification GTPase TrmE [Escherichia coli O26:H11 str.
CVM9942]
gi|394395554|gb|EJE71982.1| tRNA modification GTPase TrmE [Escherichia coli O26:H11 str.
CVM10224]
gi|394414392|gb|EJE88337.1| tRNA modification GTPase TrmE [Escherichia coli O26:H11 str.
CVM10021]
gi|394415156|gb|EJE89046.1| tRNA modification GTPase TrmE [Escherichia coli O26:H11 str.
CVM10030]
gi|394415557|gb|EJE89411.1| tRNA modification GTPase TrmE [Escherichia coli O111:H11 str.
CVM9553]
gi|394419905|gb|EJE93474.1| tRNA modification GTPase TrmE [Escherichia coli O26:H11 str.
CVM9952]
gi|394422784|gb|EJE96101.1| tRNA modification GTPase TrmE [Escherichia coli O111:H11 str.
CVM9455]
gi|408293225|gb|EKJ11679.1| tRNA modification GTPase TrmE [Escherichia coli EC1865]
gi|421936464|gb|EKT94127.1| tRNA modification GTPase TrmE [Escherichia coli O26:H11 str.
CFSAN001629]
gi|421948003|gb|EKU05054.1| tRNA modification GTPase TrmE [Escherichia coli O111:H11 str.
CFSAN001630]
gi|431210177|gb|ELF08240.1| tRNA modification GTPase mnmE [Escherichia coli KTE142]
Length = 454
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 171/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF +KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLYDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 10/118 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIV 140
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R +
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFL 117
>gi|423111067|ref|ZP_17098762.1| tRNA modification GTPase mnmE [Klebsiella oxytoca 10-5243]
gi|376377547|gb|EHS90316.1| tRNA modification GTPase mnmE [Klebsiella oxytoca 10-5243]
Length = 454
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 168/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +++ K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFKDSDGSA-LDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSTRVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + + +I D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NAVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDANDEV 281
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG + +++ K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFKDS-DGSAL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118
>gi|347841525|emb|CCD56097.1| similar to tRNA modification GTPase mss1 [Botryotinia fuckeliana]
Length = 569
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 122/353 (34%), Positives = 185/353 (52%), Gaps = 70/353 (19%)
Query: 87 LDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEV 146
LD+ + G+ G+++IR+SG L+ +S+ C P + + +PRYA++R + +P + +
Sbjct: 64 LDDTIYALSTAPGRAGIAIIRISGSACLDIYQSL-C-PSKSIPRPRYAAVRTLYEPANSI 121
Query: 147 --VLD-EGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGAL---TKLPGLRPAEPGEF 200
+LD + L L+FP PN+ TGED E VHG A + A+L + T +R AEPGEF
Sbjct: 122 PNILDSDALVLYFPAPNTVTGEDVLELHVHGGSATVKAVLSTISQCTSAAKIRYAEPGEF 181
Query: 201 SKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVE 260
++RAF N++LDL Q EAL D + AETE QR+ A+ +GN +L + E
Sbjct: 182 TRRAFQNDRLDLAQVEALSDTLSAETEQQRRAAV---RGNSGKLGRTY-----------E 227
Query: 261 AYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAY 320
A+ R Q++ G +E A
Sbjct: 228 AW-----------------REQLLYARGELE---------------------------AL 243
Query: 321 IDFSEDEIIEDN---ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVG 377
IDFSED+ +++ +L+ V +QV + I H S++ G ++ GI+ ++G PN G
Sbjct: 244 IDFSEDQHFDESPAELLSNVTAQVETMLELIAAHESASHR-GELLKKGIRIALLGPPNAG 302
Query: 378 KSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
KSSL+N + ++ SIV+ GTTRD++E LDI GY DTAGLRT S I
Sbjct: 303 KSSLLNQIVGREASIVSQEAGTTRDIVEVGLDIRGYLCTFADTAGLRTQASQI 355
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 139/290 (47%), Gaps = 67/290 (23%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ +TI+ALS+ G+ G+++IR+SG L+ +S+ C P + +P+PRYA++R + +P + +
Sbjct: 64 LDDTIYALSTAPGRAGIAIIRISGSACLDIYQSL-C-PSKSIPRPRYAAVRTLYEPANSI 121
Query: 86 --VLD-EGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDP 142
+LD + L L+FP V+G D L A+++ ++
Sbjct: 122 PNILDSDALVLYFPAPNT-------VTGEDVLELHVHGGS-----------ATVKAVLST 163
Query: 143 VSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSK 202
+S+ + + +P FT +
Sbjct: 164 ISQCT--SAAKIRYAEPGEFT--------------------------------------R 183
Query: 203 RAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAY 262
RAF N++LDL Q EAL D + AETE QR+ A+ G L + Y WR+ +L + +EA
Sbjct: 184 RAFQNDRLDLAQVEALSDTLSAETEQQRRAAVRGNSGKLGRTYEAWREQLLYARGELEAL 243
Query: 263 IDFSEDEIIEDN---ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK 309
IDFSED+ +++ +L+ V +QV + I H S++ G ++ GI+
Sbjct: 244 IDFSEDQHFDESPAELLSNVTAQVETMLELIAAHESASHR-GELLKKGIR 292
>gi|448239803|ref|YP_007403856.1| GTPase [Serratia marcescens WW4]
gi|445210167|gb|AGE15837.1| GTPase [Serratia marcescens WW4]
Length = 454
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 117/349 (33%), Positives = 176/349 (50%), Gaps = 69/349 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +++ K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISGSKAKDVAQALLG----KLPKPRYADYLPFRDAAG-ATLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LP +R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRVLALPDVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + A++ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSAMNSLQGAFSTRIHQLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + ++++ D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVMAD--LDNVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 GEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI----IETEGNLLEKNNQ 443
TTRDV+ +H+ I G P+ ++DTAGLR + ++ IE N +E+ ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWNEIEQADR 298
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
++ +TI A ++ G+ GV ++R+SG + +++ K+PKPRYA D +
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRISGSKAKDVAQALLG----KLPKPRYADYLPFRD-AA 55
Query: 84 KVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRN 138
LD+G+ LWFP + G V+ + GP L+ LK + PD ++++P S R
Sbjct: 56 GATLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVLALPDVRIARPGEFSERA 115
Query: 139 IVD 141
++
Sbjct: 116 FLN 118
>gi|417842579|ref|ZP_12488661.1| tRNA modification GTPase mnmE [Haemophilus haemolyticus M21127]
gi|341951417|gb|EGT77989.1| tRNA modification GTPase mnmE [Haemophilus haemolyticus M21127]
Length = 452
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 121/332 (36%), Positives = 171/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++RVSGP +++ K KPR A D VLD+G+ L+F
Sbjct: 13 GRGGIGILRVSGPLATEVAQAVLG----KCPKPRMADYLPFKD-ADGTVLDQGIALYFKS 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L + ++ G+R A PGEFS++AF N+KLDL Q EA+
Sbjct: 68 PNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLDLAQAEAI 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G + +E ++ VEA IDF ++EI D + +
Sbjct: 128 ADLIDATSEQAARSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEEI--DFLAD- 184
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE SN CG+ N L+ VR
Sbjct: 185 ---------GKIE-----SNLCGII----------------------------NQLDDVR 202
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S+ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 203 SEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 247
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T ++
Sbjct: 248 TTRDVLREHIHIDGMPLHIIDTAGLRDATDEV 279
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP +++ K PKPR A D
Sbjct: 1 MKETIVAQATAPGRGGIGILRVSGPLATEVAQAVLG----KCPKPRMADYLPFKD-ADGT 55
Query: 86 VLDEGLCLWF 95
VLD+G+ L+F
Sbjct: 56 VLDQGIALYF 65
>gi|284007058|emb|CBA72333.1| probable tRNA modification GTPase [Arsenophonus nasoniae]
Length = 470
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SGP + + + K+ +PRYA D +V LD+G+ L+FP
Sbjct: 31 GRGGVGILRISGPKVIEIARIVLG----KLPQPRYADYLPFYDSNGKV-LDQGIALYFPA 85
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +I+ +L + + +R A PGEFS+RAF N+K+DL Q EA+
Sbjct: 86 PNSFTGEDVLELQGHGGPVIIDLLLKRILVIDEIRIANPGEFSERAFLNDKMDLAQAEAI 145
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A TE + A++ ++G Q E + + VEA IDF ++EI + L+
Sbjct: 146 ADLIDASTEQAARSAVNSLQGVFSQQIYEMVEALTNLRIYVEAAIDFPDEEI---DFLSD 202
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE L V A++D +VR
Sbjct: 203 ---------GKIETK--------------------LNEVIAHLD-------------SVR 220
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
SQ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 221 SQAYQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALSGREAAIVTDIAG 265
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T ++
Sbjct: 266 TTRDVLREHIHIDGMPLHIIDTAGLREATDEV 297
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SGP + + + K+P+PRYA D K VL
Sbjct: 21 DTIIAQATPPGRGGVGILRISGPKVIEIARIVLG----KLPQPRYADYLPFYDSNGK-VL 75
Query: 88 DEGLCLWFP 96
D+G+ L+FP
Sbjct: 76 DQGIALYFP 84
>gi|262277801|ref|ZP_06055594.1| tRNA modification GTPase TrmE [alpha proteobacterium HIMB114]
gi|262224904|gb|EEY75363.1| tRNA modification GTPase TrmE [alpha proteobacterium HIMB114]
Length = 445
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 172/335 (51%), Gaps = 67/335 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G G+++IR+SG +AL+ + PR A L++ D E++ DEG+ +W+P+
Sbjct: 11 GVSGIAIIRISGD---SALQIANQITRTVIDHPRSALLKSFYDQEGELI-DEGILIWYPE 66
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
S+TGE E +HGS AVIN +L L R AEPGEF+K A+ NN+++L + E++
Sbjct: 67 GQSYTGEHLIEIHIHGSKAVINKLLEDLGDRKDCRLAEPGEFTKTAYQNNRINLYEAESI 126
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL+QAETE QR +AL + K + EWR+ IL+ L+ EA IDFSE+++ E + N
Sbjct: 127 ADLLQAETEAQRIQALRLKNSSPK--FLEWRETILDVLSKTEASIDFSEEDLPEGILKNN 184
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
IKS++ + ++ +D + EII D
Sbjct: 185 --------------------------EEKIKSIV--SDIDEMLDETMGEIIRD------- 209
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
G K I+G PN GKSS +N L ++Q +IV+SI G
Sbjct: 210 --------------------------GFKIAIIGPPNAGKSSFLNLLVKRQAAIVSSIKG 243
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIET 433
TTRD+IE I YPVIL DTAG+R + I +T
Sbjct: 244 TTRDIIEVKYHINNYPVILTDTAGIRNAKNKIEKT 278
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 31 FALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEG 90
+ALS+ G G+++IR+SG +AL+ + PR A L++ D +++ DEG
Sbjct: 4 YALSTPPGVSGIAIIRISGD---SALQIANQITRTVIDHPRSALLKSFYDQEGELI-DEG 59
Query: 91 LCLWFP 96
+ +W+P
Sbjct: 60 ILIWYP 65
>gi|157155417|ref|YP_001465191.1| tRNA modification GTPase TrmE [Escherichia coli E24377A]
gi|166991107|sp|A7ZTR2.1|MNME_ECO24 RecName: Full=tRNA modification GTPase MnmE
gi|157077447|gb|ABV17155.1| tRNA modification GTPase TrmE [Escherichia coli E24377A]
Length = 454
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF +KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLYDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 10/118 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIV 140
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R +
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFL 117
>gi|453064443|gb|EMF05408.1| tRNA modification GTPase TrmE [Serratia marcescens VGH107]
Length = 454
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 117/349 (33%), Positives = 176/349 (50%), Gaps = 69/349 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +++ K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISGSKAKDVAQALLG----KLPKPRYADYLPFRDATG-ATLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LP +R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRVLALPDVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + A++ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSAMNSLQGAFSTRIHQLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + ++++ D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVMAD--LDNVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 GEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI----IETEGNLLEKNNQ 443
TTRDV+ +H+ I G P+ ++DTAGLR + ++ IE N +E+ ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWNEIEQADR 298
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
++ +TI A ++ G+ GV ++R+SG + +++ K+PKPRYA D +
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRISGSKAKDVAQALLG----KLPKPRYADYLPFRD-AT 55
Query: 84 KVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRN 138
LD+G+ LWFP + G V+ + GP L+ LK + PD ++++P S R
Sbjct: 56 GATLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVLALPDVRIARPGEFSERA 115
Query: 139 IVD 141
++
Sbjct: 116 FLN 118
>gi|292901145|ref|YP_003540514.1| tRNA modification GTPase [Erwinia amylovora ATCC 49946]
gi|291200993|emb|CBJ48132.1| probable tRNA modification GTPase [Erwinia amylovora ATCC 49946]
Length = 454
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG N +A K+ KPR+A D LD+G+ LWFP
Sbjct: 15 GRGGVGILRVSG----NKAARVAQLLLGKLPKPRHADYLPFCD-ADGSTLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PHSFTGEDVLELQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + A++ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSAVNSLQGVFSTRVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+ + QLH ++I D L+ VR
Sbjct: 187 GKIE-AQLH---------------------------------------QVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S+ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 SEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIQIDGMPLHIIDTAGLREASDEV 281
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++RVSG N +A K+PKPR+A D L
Sbjct: 5 DTIVAQATPPGRGGVGILRVSG----NKAARVAQLLLGKLPKPRHADYLPFCD-ADGSTL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP H G V+ + GP L+ LK + P +++ P S R ++
Sbjct: 60 DQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLN 118
>gi|358375649|dbj|GAA92228.1| mitochondrial GTPase [Aspergillus kawachii IFO 4308]
Length = 618
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 123/380 (32%), Positives = 194/380 (51%), Gaps = 77/380 (20%)
Query: 63 PDQKVPKPRYASLRNIVDPVSKVV-LDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMA 121
P +VP RY S + P + D + G+ ++V+R SGP + KS+
Sbjct: 42 PSPRVPPQRYFSGSS---PAQSIFDADSTIYALSTASGRAAIAVVRASGPACVQIYKSL- 97
Query: 122 CYPDQKVSKPRYASLRNIVDPVSE----VVLDEG-LCLWFPKPNSFTGEDCCEFQVHGSI 176
C P+ + +PR+A +R + DP + VLD G L L+FP P + TGED E +HG
Sbjct: 98 C-PEAPLPRPRFAVVRTLYDPFQKPSPNTVLDAGALVLYFPGPKTVTGEDVLELHLHGGP 156
Query: 177 AVINAILGALTKLPG----LRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQK 232
A++ ++L A+++ +R AEPGEF++RAF NN+LDL Q EALGD + A+TE QR+
Sbjct: 157 AIVKSVLTAISRTNNSDYTVRYAEPGEFTRRAFMNNRLDLPQIEALGDTLSADTEQQRRL 216
Query: 233 ALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEK 292
A+ L + Y +W R Q++ G +E
Sbjct: 217 AVRGASDALSKRYEQW-------------------------------RHQLLYARGELE- 244
Query: 293 HIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIED---NILNTVRSQVVQLHGSIE 349
A IDFSED+ ++ +++++V +QV L I
Sbjct: 245 --------------------------ALIDFSEDQHFDESTEDLVSSVAAQVRALRVQIA 278
Query: 350 KHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLD 409
HI+ ++K G +R+GIK ++G PN GKSSL+N + ++ +IV++ GTTRD+++ +D
Sbjct: 279 LHIQNASK-GELLRNGIKVALLGAPNAGKSSLLNRIVGREAAIVSTEEGTTRDIVDVGVD 337
Query: 410 IGGYPVILLDTAGLRTTTSD 429
IGG+ L D AG+R+ +D
Sbjct: 338 IGGWYCKLGDMAGIRSEPND 357
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 148/294 (50%), Gaps = 76/294 (25%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSK--- 84
+TI+ALS+ G+ ++V+R SGP + KS+ C P+ +P+PR+A +R + DP K
Sbjct: 66 STIYALSTASGRAAIAVVRASGPACVQIYKSL-C-PEAPLPRPRFAVVRTLYDPFQKPSP 123
Query: 85 -VVLDEG-LCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDP 142
VLD G L L+FP GP T+
Sbjct: 124 NTVLDAGALVLYFP-------------GPKTVTG-------------------------- 144
Query: 143 VSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG----LRPAEPG 198
E VL+ +HG A++ ++L A+++ +R AEPG
Sbjct: 145 --EDVLE--------------------LHLHGGPAIVKSVLTAISRTNNSDYTVRYAEPG 182
Query: 199 EFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLAS 258
EF++RAF NN+LDL Q EALGD + A+TE QR+ A+ L + Y +WR +L +
Sbjct: 183 EFTRRAFMNNRLDLPQIEALGDTLSADTEQQRRLAVRGASDALSKRYEQWRHQLLYARGE 242
Query: 259 VEAYIDFSEDEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK 309
+EA IDFSED+ + ++++++V +QV L I HI+ ++K G +R+GIK
Sbjct: 243 LEALIDFSEDQHFDESTEDLVSSVAAQVRALRVQIALHIQNASK-GELLRNGIK 295
>gi|398355660|ref|YP_006401124.1| tRNA modification GTPase MnmE [Sinorhizobium fredii USDA 257]
gi|390130986|gb|AFL54367.1| tRNA modification GTPase MnmE [Sinorhizobium fredii USDA 257]
Length = 439
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/213 (46%), Positives = 135/213 (63%), Gaps = 6/213 (2%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+VIR+SGP T +AL + C + KPR ASLR I E+ LD GL ++FP P
Sbjct: 17 AGVAVIRISGPATADALVRL-C---GALPKPRSASLRTIRTRNDEM-LDSGLVIYFPAPA 71
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDCCE QVHG AV++AIL AL GLR AE GEFS+RAF N K+DL + E L D
Sbjct: 72 SFTGEDCCELQVHGGRAVVHAILDALAGFEGLRHAEAGEFSRRAFQNGKMDLVEVEGLAD 131
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI AETE+QR+ AL Q G +Y W + + + A +EA +DF+++E + ++ T+
Sbjct: 132 LITAETEMQRRLALEQSSGGQSAVYQSWARRLTHARAMIEAELDFADEEDVPGSVSETIW 191
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
+ + +L G I+ HI+ + + +R G+K VI
Sbjct: 192 ADIEKLQGEIDAHIDQAGLAEI-VRDGLKIVIA 223
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 81/121 (66%), Gaps = 2/121 (1%)
Query: 315 ASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEP 374
A +EA +DF+++E + ++ T+ + + +L G I+ HI+ + + +R G+K VI GEP
Sbjct: 168 AMIEAELDFADEEDVPGSVSETIWADIEKLQGEIDAHIDQAGLAEI-VRDGLKIVIAGEP 226
Query: 375 NVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETE 434
N GKSSL+N L ++ I+IVT I GTTRDV+ L + G+ V L DTAGLR T +I+E E
Sbjct: 227 NAGKSSLLNALAKRDIAIVTEIAGTTRDVLSVDLSLAGFSVKLFDTAGLR-ETEEIVERE 285
Query: 435 G 435
G
Sbjct: 286 G 286
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 46/73 (63%), Gaps = 5/73 (6%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
+ +TI+ALSSG GV+VIR+SGP T +AL + C +PKPR ASLR I +
Sbjct: 1 MQFTDTIYALSSGALPAGVAVIRISGPATADALVRL-C---GALPKPRSASLRTI-RTRN 55
Query: 84 KVVLDEGLCLWFP 96
+LD GL ++FP
Sbjct: 56 DEMLDSGLVIYFP 68
>gi|260774975|ref|ZP_05883875.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio
coralliilyticus ATCC BAA-450]
gi|260609065|gb|EEX35224.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio
coralliilyticus ATCC BAA-450]
Length = 453
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 123/336 (36%), Positives = 174/336 (51%), Gaps = 73/336 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP L A +A K +PRYA + LD+G+ L+FP
Sbjct: 14 GRGGVGIIRVSGP--LAA--KVASEVTGKELRPRYAEYLSFT-AQDGTQLDQGIALYFPN 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ ++ + ++PG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 69 PNSFTGEDVLELQGHGGPVVMDMLIKRILQIPGIRTARPGEFSERAFLNDKLDLAQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLAS----VEAYIDFSEDEIIEDN 274
DLI A +E + AL ++G +S Q ++ESL VEA IDF E+EI D
Sbjct: 129 ADLIDASSEQAAKSALKSLQGA----FSNRIQTLVESLIHLRIYVEAAIDFPEEEI--DF 182
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
+ + ++ + ++++I DN L
Sbjct: 183 LADG------------------------KVSADLQTII------------------DN-L 199
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
VR + Q G +R G+K VI G PN GKSSL+N L K+ +IVT
Sbjct: 200 TAVRKEATQ---------------GAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVT 244
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 245 DIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 280
>gi|392568971|gb|EIW62145.1| tRNA modification GTPase TrmE [Trametes versicolor FP-101664 SS1]
Length = 565
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/344 (34%), Positives = 171/344 (49%), Gaps = 67/344 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR-------NIVDPVSEVVLDEG 151
GK GV+V+R+SGPD L + + + K R ++V P + VLD+G
Sbjct: 105 GKAGVAVVRISGPDALEVWRQVVQIRREGKGKARERDPEPWKMHRCHVVHPQTHEVLDDG 164
Query: 152 LCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLD 211
L ++F P SFT ED E VH A+I+++L + LP RPAE GEF++RAF +L
Sbjct: 165 LAVFFKGPKSFTTEDVLELHVHSGRAIISSVLSTIACLPFCRPAERGEFTRRAFEGGRL- 223
Query: 212 LTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEII 271
DL Q E L+ L +++ + + E
Sbjct: 224 --------DLTQVE--------------GLRDL--------IDAETETQRKLALRNAEGA 253
Query: 272 EDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIED 331
L +R +++Q C+A VEA IDF E E IE+
Sbjct: 254 TRARLEHLRKEIIQ---------------------------CMALVEALIDFGEGEDIEE 286
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
+ + R +V +L +I H+ N+ G +RSG++ I G PN GKSSL+NFL Q++ +
Sbjct: 287 GVYDQARERVQKLRATIAHHLS-DNRRGEIMRSGVRLAIFGPPNAGKSSLLNFLAQREAA 345
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IVT +PGTTRD++E LDIGG PVI+ DTAGLR T D++E G
Sbjct: 346 IVTPVPGTTRDILEVSLDIGGLPVIVADTAGLR-HTQDVVEKIG 388
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 134/295 (45%), Gaps = 69/295 (23%)
Query: 25 AIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMA-------CYPDQKVPKPRYASLRN 77
A + TI+ALS+ GK GV+V+R+SGPD L + + ++ P+P +
Sbjct: 92 AQRRTIYALSTPPGKAGVAVVRISGPDALEVWRQVVQIRREGKGKARERDPEPWKMHRCH 151
Query: 78 IVDPVSKVVLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR 137
+V P + VLD+GL ++F GP + + + V + S R
Sbjct: 152 VVHPQTHEVLDDGLAVFF-------------KGPKS---------FTTEDVLELHVHSGR 189
Query: 138 NIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEP 197
I+ V + CL F +P AE
Sbjct: 190 AIISSVLSTI----ACLPFCRP-----------------------------------AER 210
Query: 198 GEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLA 257
GEF++RAF +LDLTQ E L DLI AETE QR+ AL +G + R+ I++ +A
Sbjct: 211 GEFTRRAFEGGRLDLTQVEGLRDLIDAETETQRKLALRNAEGATRARLEHLRKEIIQCMA 270
Query: 258 SVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
VEA IDF E E IE+ + + R +V +L +I H+ N+ G +RSG++ I
Sbjct: 271 LVEALIDFGEGEDIEEGVYDQARERVQKLRATIAHHLS-DNRRGEIMRSGVRLAI 324
>gi|159045994|ref|YP_001534788.1| tRNA modification GTPase TrmE [Dinoroseobacter shibae DFL 12]
gi|205829136|sp|A8LPC2.1|MNME_DINSH RecName: Full=tRNA modification GTPase MnmE
gi|157913754|gb|ABV95187.1| tRNA modification GTPase TrmE [Dinoroseobacter shibae DFL 12]
Length = 429
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 123/337 (36%), Positives = 170/337 (50%), Gaps = 75/337 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMAC-YPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
GK GV+V+R+SG +A + +A PD + SLR + D V+ DE L L F
Sbjct: 12 GKSGVAVLRISGSRAFHAGRVLAGGLPDAQ-----RTSLRKLRDSDGSVI-DEALVLAFE 65
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
PNSFTGEDC EFQ HGS A+I A++ L+ LPGLR A+PGEF++RA NN++DL Q
Sbjct: 66 SPNSFTGEDCVEFQTHGSPAIIAALMNELSALPGLRLAQPGEFTRRALENNRMDLAQ--- 122
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
VE D E E
Sbjct: 123 -----------------------------------------VEGLADLIEAET------E 135
Query: 278 TVRSQVVQ-LHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
R Q ++ G + + +EL K VR +A +E IDF+++E+ ED
Sbjct: 136 AQRKQALRTFSGELGQKVELWRKDLVR---------AMALLEVTIDFADEEVPED----- 181
Query: 337 VRSQVVQLHGSIEKHIELSNK---CGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIV 393
V +V +L G + +++ + RIR G + I+G PNVGKSSL+N L ++ +I
Sbjct: 182 VYPEVQELLGRVSQNLAAESAGTHAAERIRHGFEVAILGAPNVGKSSLLNRLAGREAAIT 241
Query: 394 TSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
+SI GTTRDV+E LD+ G PV +LDTAGLR T +I
Sbjct: 242 SSIAGTTRDVVEVRLDLDGLPVTVLDTAGLRETQDEI 278
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 124/292 (42%), Gaps = 76/292 (26%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFAL+S GK GV+V+R+SG +A + +A +P + SLR + D V+
Sbjct: 2 DTIFALASAPGKSGVAVLRISGSRAFHAGRVLAG----GLPDAQRTSLRKLRDSDGSVI- 56
Query: 88 DEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPR-YASLRNIVDPVSEV 146
DE L L F ++ N+ C Q P A+L N + +
Sbjct: 57 DEALVLAF----------------ESPNSFTGEDCVEFQTHGSPAIIAALMNELSALP-- 98
Query: 147 VLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFF 206
L +P FT +RA
Sbjct: 99 ------GLRLAQPGEFT--------------------------------------RRALE 114
Query: 207 NNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFS 266
NN++DL Q E L DLI+AETE QR++AL G L Q WR+ ++ ++A +E IDF+
Sbjct: 115 NNRMDLAQVEGLADLIEAETEAQRKQALRTFSGELGQKVELWRKDLVRAMALLEVTIDFA 174
Query: 267 EDEIIEDNILNTVRSQVVQLHGSIEKHIELSNK---CGVRIRSGIKSVICLA 315
++E+ ED V +V +L G + +++ + RIR G + I A
Sbjct: 175 DEEVPED-----VYPEVQELLGRVSQNLAAESAGTHAAERIRHGFEVAILGA 221
>gi|292490141|ref|YP_003533036.1| tRNA modification GTPase trmE [Erwinia amylovora CFBP1430]
gi|428787130|ref|ZP_19004606.1| tRNA modification GTPase trmE [Erwinia amylovora ACW56400]
gi|291555583|emb|CBA24183.1| tRNA modification GTPase trmE [Erwinia amylovora CFBP1430]
gi|426274597|gb|EKV52339.1| tRNA modification GTPase trmE [Erwinia amylovora ACW56400]
Length = 474
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 168/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG N +A K+ KPR+A D LD+G+ LWFP
Sbjct: 35 GRGGVGILRVSG----NKAARVAQLLLGKLPKPRHADYLPFCD-ADGSTLDQGIALWFPG 89
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 90 PHSFTGEDVLELQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLNDKLDLAQAEAI 149
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + A++ ++G + + + VEA IDF ++EI + L+
Sbjct: 150 ADLIDASSEQAARSAVNSLQGVFSTRVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 206
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + ++I D L+ VR
Sbjct: 207 ---------GKIEAQLH-------------------------------QVIAD--LDAVR 224
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S+ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 225 SEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 269
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 270 TTRDVLREHIQIDGMPLHIIDTAGLREASDEV 301
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 10/133 (7%)
Query: 14 VIFFSRRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYA 73
+IF +R ++ +TI A ++ G+ GV ++RVSG N +A K+PKPR+A
Sbjct: 11 LIFCMKRELNMNHSDTIVAQATPPGRGGVGILRVSG----NKAARVAQLLLGKLPKPRHA 66
Query: 74 SLRNIVDPVSKVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKV 128
D LD+G+ LWFP H G V+ + GP L+ LK + P ++
Sbjct: 67 DYLPFCD-ADGSTLDQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRILSLPGLRI 125
Query: 129 SKPRYASLRNIVD 141
+ P S R ++
Sbjct: 126 ANPGEFSERAFLN 138
>gi|296810456|ref|XP_002845566.1| tRNA modification GTPase GTPBP3 [Arthroderma otae CBS 113480]
gi|238842954|gb|EEQ32616.1| tRNA modification GTPase GTPBP3 [Arthroderma otae CBS 113480]
Length = 622
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 122/346 (35%), Positives = 177/346 (51%), Gaps = 77/346 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDP----VSEVVLDEG-LC 153
G+ +++IR+SG D + K++ P +K+ KPR+A+LR I +P + +LD G L
Sbjct: 71 GRAAIAIIRISGSDCIPIYKALC--PGRKLPKPRFAALRTIYEPGKPTSGDNILDSGALV 128
Query: 154 LWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG--------LRPAEPGEFSKRAF 205
FP PN+ TGED E VHGS AVI +IL A+ K G +R AEPGEF++RAF
Sbjct: 129 FHFPGPNTVTGEDVLELHVHGSPAVIRSILNAIPKCAGTDGAPSSSIRYAEPGEFTRRAF 188
Query: 206 FNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDF 265
N++LDL Q EALG+ + A+TE QR+ A+ L Y +W
Sbjct: 189 LNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDALSTRYEQW----------------- 231
Query: 266 SEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSE 325
R Q++ G +E A IDFSE
Sbjct: 232 --------------RQQLLYARGELE---------------------------ALIDFSE 250
Query: 326 DEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLM 382
D+ + D+ + +V QV L I HI+ + K G +RSGIK ++G PN GKSSL+
Sbjct: 251 DQHFDESVDDFIFSVTKQVHNLLHQINLHIQNAAK-GELLRSGIKVALLGAPNAGKSSLL 309
Query: 383 NFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428
N + ++ +IV+S GTTRD+++ +D+GG+ D AGLR+ S
Sbjct: 310 NQVVGREAAIVSSEEGTTRDIVDVGVDLGGWLCKFGDMAGLRSELS 355
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 142/292 (48%), Gaps = 70/292 (23%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TI+ALS+ G+ +++IR+SG D + K++ P +K+PKPR+A+LR I +P D
Sbjct: 62 TIYALSTAPGRAAIAIIRISGSDCIPIYKALC--PGRKLPKPRFAALRTIYEPGKPTSGD 119
Query: 89 EGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVL 148
L G V GP+T+
Sbjct: 120 NIL--------DSGALVFHFPGPNTV---------------------------------- 137
Query: 149 DEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG--------LRPAEPGEF 200
TGED E VHGS AVI +IL A+ K G +R AEPGEF
Sbjct: 138 --------------TGEDVLELHVHGSPAVIRSILNAIPKCAGTDGAPSSSIRYAEPGEF 183
Query: 201 SKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVE 260
++RAF N++LDL Q EALG+ + A+TE QR+ A+ L Y +WRQ +L + +E
Sbjct: 184 TRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDALSTRYEQWRQQLLYARGELE 243
Query: 261 AYIDFSEDEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK 309
A IDFSED+ + D+ + +V QV L I HI+ + K G +RSGIK
Sbjct: 244 ALIDFSEDQHFDESVDDFIFSVTKQVHNLLHQINLHIQNAAK-GELLRSGIK 294
>gi|365759052|gb|EHN00865.1| Mss1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 526
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 129/362 (35%), Positives = 173/362 (47%), Gaps = 76/362 (20%)
Query: 92 CLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKP-RYASLRNIVDPVS------ 144
L P + +++IR+SG + + + P R A LRNI P S
Sbjct: 41 ALSTPANRTSAIAIIRISGTHSKYIYNQLV---NSNEPPPIRKAILRNIYSPPSISPRGS 97
Query: 145 -----EVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL------PGLR 193
VLD L L+F P SFTGED E VHG AV+ IL A+ L +R
Sbjct: 98 HCQEAAKVLDSSLLLYFQAPRSFTGEDVLELHVHGGKAVVYGILKAIESLHDRNSGKDIR 157
Query: 194 PAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLIL 253
A PG+FS+RAF N K DLTQ E + DLI +ETE QR+ AL G K L+ WR+ I+
Sbjct: 158 FALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGENKVLFGNWRKTII 217
Query: 254 ESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
ES+A + A IDF++D SQ + I +E + KC
Sbjct: 218 ESMAQLTAIIDFADDN-----------SQELDNTDMIFHDVENNIKC------------- 253
Query: 314 LASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGE 373
+R ++V + K I L + GIK V++G
Sbjct: 254 -----------------------LREEIVTFMQKVRKSIILQD--------GIKLVLLGA 282
Query: 374 PNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIET 433
PNVGKSSL+N L ISIV+ IPGTTRD ++ ++I GY VI+ DTAG+R ++D IE
Sbjct: 283 PNVGKSSLVNSLTNDDISIVSDIPGTTRDSVDAIININGYKVIICDTAGIRDKSADKIEI 342
Query: 434 EG 435
G
Sbjct: 343 LG 344
>gi|420367718|ref|ZP_14868495.1| tRNA modification GTPase TrmE [Shigella flexneri 1235-66]
gi|391322940|gb|EIQ79611.1| tRNA modification GTPase TrmE [Shigella flexneri 1235-66]
Length = 454
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISGLKASEVAETVLG----KLPKPRYADYLPFKD-ADGSALDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE L SV A +D VR
Sbjct: 187 ---------GKIEAQ--------------------LNSVMADLD-------------AVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q GS+ +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ--GSL-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 281
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRISGLKASEVAETVLG----KLPKPRYADYLPFKD-ADGSAL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|312174334|emb|CBX82587.1| tRNA modification GTPase trmE [Erwinia amylovora ATCC BAA-2158]
Length = 474
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 168/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG N +A K+ KPR+A D LD+G+ LWFP
Sbjct: 35 GRGGVGILRVSG----NKAARVAQLLLGKLPKPRHADYLPFCD-ADGSTLDQGIALWFPG 89
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 90 PHSFTGEDVLELQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLNDKLDLAQAEAI 149
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + A++ ++G + + + VEA IDF ++EI + L+
Sbjct: 150 ADLIDASSEQAARSAVNSLQGVFSTRINHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 206
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + ++I D L+ VR
Sbjct: 207 ---------GKIEAQLH-------------------------------QVIAD--LDAVR 224
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S+ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 225 SEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 269
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 270 TTRDVLREHIQIDGMPLHIIDTAGLREASDEV 301
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 102/243 (41%), Gaps = 30/243 (12%)
Query: 14 VIFFSRRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYA 73
+IF +R ++ +TI A ++ G+ GV ++RVSG N +A K+PKPR+A
Sbjct: 11 LIFCMKRELNMNHSDTIVAQATPPGRGGVGILRVSG----NKAARVAQLLLGKLPKPRHA 66
Query: 74 SLRNIVDPVSKVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKV 128
D LD+G+ LWFP H G V+ + GP L+ LK + P ++
Sbjct: 67 DYLPFCD-ADGSTLDQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRILSLPGLRI 125
Query: 129 SKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAV-INAILGALT 187
+ P S R ++ ++ E + + + G + IN ++ ALT
Sbjct: 126 ANPGEFSERAFLNDKLDLAQAEAIADLIDASSEQAARSAVN-SLQGVFSTRINHLVEALT 184
Query: 188 KLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSE 247
L R + +D E I ++ + + LHQ+ +L + SE
Sbjct: 185 HL-------------RIYVEAAIDFPDEE-----IDFLSDGKIEAQLHQVIADLDAVRSE 226
Query: 248 WRQ 250
RQ
Sbjct: 227 ARQ 229
>gi|238921763|ref|YP_002935278.1| tRNA modification GTPase TrmE, putative [Edwardsiella ictaluri
93-146]
gi|238871332|gb|ACR71043.1| tRNA modification GTPase TrmE, putative [Edwardsiella ictaluri
93-146]
Length = 455
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 115/332 (34%), Positives = 168/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSGP +++A K+ KPRYA D LD+G+ L+FP
Sbjct: 16 GRGGVGILRVSGPQA----QAVAMALLGKLPKPRYADYLPFRDH-DGTPLDQGIALYFPG 70
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +LP LR A PGEFS+RAF N+K+DL Q EA+
Sbjct: 71 PNSFTGEDVLELQGHGGPVILDLLLKRILQLPELRIARPGEFSERAFLNDKMDLAQAEAI 130
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + A++ ++G + + ++ VEA IDF ++EI
Sbjct: 131 ADLIDASSEQAARSAVNSLQGVFSARIHQLVESLIHLRIYVEAAIDFPDEEI-------- 182
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+ VEA+++ DE L VR
Sbjct: 183 -------------------------------DFLSDGKVEAHLNAVMDE------LAGVR 205
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 206 TEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 250
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 251 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 282
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++RVSGP +++A K+PKPRYA D L
Sbjct: 6 DTIVAQATAPGRGGVGILRVSGPQA----QAVAMALLGKLPKPRYADYLPFRDH-DGTPL 60
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ L+FP + G V+ + GP L+ LK + P+ ++++P S R ++
Sbjct: 61 DQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILQLPELRIARPGEFSERAFLN 119
>gi|15606214|ref|NP_213591.1| tRNA modification GTPase TrmE [Aquifex aeolicus VF5]
gi|6647876|sp|O67030.1|MNME_AQUAE RecName: Full=tRNA modification GTPase MnmE
gi|2983408|gb|AAC06992.1| thiophene and furan oxidation protein [Aquifex aeolicus VF5]
Length = 448
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 127/353 (35%), Positives = 181/353 (51%), Gaps = 79/353 (22%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
+G+ + ++R+SG L+ +K + ++ KPRYA + D E LDEG+ +++
Sbjct: 12 YGESAIGIVRLSGKGVLDLVKKF--FKTKREIKPRYAHFGVLYDDKGEE-LDEGVLIYYK 68
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P+S+TGED E +HG+ ++ L G R AEPGEF+KRAF N KLDLTQ EA
Sbjct: 69 APHSYTGEDMVELNLHGNPRILKRALELFVN-AGARLAEPGEFTKRAFLNGKLDLTQAEA 127
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ +LI A+TEL R+ AL
Sbjct: 128 VAELISAKTELARKVALK------------------------------------------ 145
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
QLHG + KHI + + + LA VEA I+F+E+ +I
Sbjct: 146 -------QLHGELSKHIRPLRETLLEL---------LAYVEADIEFAEE-----DIPTLT 184
Query: 338 RSQVVQLHGSIEKHIELSN------KCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
+ QV+Q+ ++K IE N K G IR G+K IVG PNVGKSSL N L +++ +
Sbjct: 185 KEQVIQM---VDKVIEGINELLKTAKTGKFIREGVKLAIVGRPNVGKSSLFNALLKEERA 241
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKNNQQ 444
IVT I GTTRD IE+ L I G PV L+DTAG+R T D++E G +E++ Q+
Sbjct: 242 IVTDIAGTTRDFIEETLQIKGVPVRLVDTAGIR-ETKDLVERIG--VERSKQK 291
>gi|384412120|ref|YP_005621485.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|335932494|gb|AEH63034.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis
ATCC 10988]
Length = 434
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 120/337 (35%), Positives = 163/337 (48%), Gaps = 64/337 (18%)
Query: 101 CGVSVIRVSGPDTLNALKSMACY-PDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKP 159
G++VIR+SG +A AC +K+ + R A LRN+ DP S LD+ L LW P P
Sbjct: 14 AGIAVIRISG----SAAADTACLLTRKKIPEARRAVLRNLYDPDSGEQLDQSLLLWLPAP 69
Query: 160 NSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALG 219
+ TGED E VHG AVI+A+L L KLP LRPAE GEF++RAF N + L + E LG
Sbjct: 70 KTVTGEDLLELHVHGGRAVIDAVLKTLEKLPDLRPAEAGEFTRRAFENGVISLHEAEGLG 129
Query: 220 DLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTV 279
DL+ AET QR+ AL G L + S W+ +L
Sbjct: 130 DLLTAETASQRRAALMMSGGALGRQISAWQDRLL-------------------------- 163
Query: 280 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRS 339
L G IE + + D EDE L ++
Sbjct: 164 -----ALSGQIEASFDFAE-----------------------DIEEDETESRQHLAVMKD 195
Query: 340 QVVQLHGSIEKHIELSNKCGV-RIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ L I +H + N+ + R+R G++ V+ G PN GKS+L+N L + I+I I G
Sbjct: 196 KIAAL---IAEHRQFENRPTMERLRDGLRVVLAGRPNAGKSTLINALTGQDIAITAPIAG 252
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE + G P+ DTAGL + D+IE G
Sbjct: 253 TTRDVIEVSFALKGIPMRFSDTAGLH-ESDDLIEKAG 288
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACY-PDQKVPKPRYASLRNIVDPVSKVV 86
TIFALSSG G++VIR+SG +A AC +K+P+ R A LRN+ DP S
Sbjct: 2 KTIFALSSGRPPAGIAVIRISG----SAAADTACLLTRKKIPEARRAVLRNLYDPDSGEQ 57
Query: 87 LDEGLCLWFP 96
LD+ L LW P
Sbjct: 58 LDQSLLLWLP 67
>gi|77407969|ref|ZP_00784719.1| tRNA modification GTPase TrmE [Streptococcus agalactiae COH1]
gi|421146881|ref|ZP_15606584.1| tRNA modification GTPase TrmE [Streptococcus agalactiae GB00112]
gi|77173427|gb|EAO76546.1| tRNA modification GTPase TrmE [Streptococcus agalactiae COH1]
gi|401686588|gb|EJS82565.1| tRNA modification GTPase TrmE [Streptococcus agalactiae GB00112]
Length = 458
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 119/337 (35%), Positives = 171/337 (50%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D L + D + + +IVDP +LDE +
Sbjct: 18 GEGAIGIVRISGTDALKIASKIYRGKDLSAIQSHTLNYGHIVDPDKNEILDEVMLGVMLA 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL + + G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 78 PKTFTREDVIEINTHGGIAVTNEILQLILR-HGARMAEPGEFTKRAFLNGRVDLTQAEAV 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI+A+T+ A+ Q+ G+LK L + RQ IL +LA VE ID+ E + +E+
Sbjct: 137 MDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQEILNTLAQVEVNIDYPEYDDVEEMTTTL 196
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+R + + +E N+L T R
Sbjct: 197 MREKTQEFQALME----------------------------------------NLLRTAR 216
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
HG I +R G+ + I+G PNVGKSSL+N L +++ +IVT I G
Sbjct: 217 ------HGKI-------------LREGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEG 257
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 258 TTRDVIEEYVNIKGVPLKLVDTAGIR-DTDDIVEKIG 293
>gi|56552884|ref|YP_163723.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis
ZM4]
gi|81820837|sp|Q5NKZ8.1|MNME_ZYMMO RecName: Full=tRNA modification GTPase MnmE
gi|56544458|gb|AAV90612.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis
ZM4]
Length = 434
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 120/337 (35%), Positives = 163/337 (48%), Gaps = 64/337 (18%)
Query: 101 CGVSVIRVSGPDTLNALKSMACY-PDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKP 159
G++VIR+SG +A AC +K+ + R A LRN+ DP S LD+ L LW P P
Sbjct: 14 AGIAVIRISG----SAAADTACLLTRKKIPEARRAVLRNLYDPDSGEQLDQSLLLWLPAP 69
Query: 160 NSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALG 219
+ TGED E VHG AVI+A+L L KLP LRPAE GEF++RAF N + L + E LG
Sbjct: 70 KTVTGEDLLELHVHGGRAVIDAVLKTLEKLPDLRPAEAGEFTRRAFENGVISLHEAEGLG 129
Query: 220 DLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTV 279
DL+ AET QR+ AL G L + S W+ +L
Sbjct: 130 DLLTAETASQRRAALMMSGGALGRQISAWQDRLL-------------------------- 163
Query: 280 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRS 339
L G IE + + D EDE L ++
Sbjct: 164 -----ALSGQIEASFDFAE-----------------------DIEEDETESRQHLAVMKD 195
Query: 340 QVVQLHGSIEKHIELSNKCGV-RIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ L I +H + N+ + R+R G++ V+ G PN GKS+L+N L + I+I I G
Sbjct: 196 KIAAL---IAEHRQFENRPTMERLRDGLRVVLAGRPNAGKSTLINALTGQDIAITAPIAG 252
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE + G P+ DTAGL + D+IE G
Sbjct: 253 TTRDVIEVSFALKGIPMRFSDTAGLH-ESDDLIEKAG 288
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACY-PDQKVPKPRYASLRNIVDPVSKVV 86
TIFALSSG G++VIR+SG +A AC +K+P+ R A LRN+ DP S
Sbjct: 2 KTIFALSSGRPPAGIAVIRISG----SAAADTACLLTRKKIPEARRAVLRNLYDPDSGEQ 57
Query: 87 LDEGLCLWFP 96
LD+ L LW P
Sbjct: 58 LDQSLLLWLP 67
>gi|134082090|emb|CAK42207.1| unnamed protein product [Aspergillus niger]
Length = 615
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 127/404 (31%), Positives = 203/404 (50%), Gaps = 83/404 (20%)
Query: 39 KCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV-LDEGLCLWFPR 97
+C + +GP AL + + P +VP RY S + P + D +
Sbjct: 21 RCFTVARQGAGP----ALHARSSSP--RVPPRRYFS---VSSPAQSIFDADSTIYALSTA 71
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSE----VVLDEG-L 152
G+ ++V+R SGP + KS+ C P+ + +PR A +R + DP + VLD G L
Sbjct: 72 SGRAAIAVVRASGPACVQIYKSL-C-PEAPLPRPRLAVVRTLYDPSQKPSPNTVLDAGAL 129
Query: 153 CLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG----LRPAEPGEFSKRAFFNN 208
L+FP P + TGED E +HG A++ ++L ++++ +R AEPGEF++RAF NN
Sbjct: 130 VLYFPGPKTVTGEDVLELHLHGGPAIVKSVLSSISRTNNPDYTVRYAEPGEFTRRAFMNN 189
Query: 209 KLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSED 268
+LDL Q EALGD + A+TE QR+ A+ L + Y +W
Sbjct: 190 RLDLPQIEALGDTLSADTEQQRRLAVRGASDALSKRYEQW-------------------- 229
Query: 269 EIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI 328
R Q++ G +E A IDFSED+
Sbjct: 230 -----------RHQLLYARGELE---------------------------ALIDFSEDQH 251
Query: 329 IED---NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFL 385
++ +++++V +QV L I HI+ ++K G +R+GIK ++G PN GKSSL+N +
Sbjct: 252 FDESTEDLVSSVAAQVRALRAQIALHIQNASK-GELLRNGIKVALLGAPNAGKSSLLNRI 310
Query: 386 CQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
++ +IV++ GTTRD+++ +DIGG+ L D AG+R+ +D
Sbjct: 311 VGREAAIVSTEEGTTRDIVDVGVDIGGWYCKLGDMAGIRSEPND 354
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 147/294 (50%), Gaps = 76/294 (25%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSK--- 84
+TI+ALS+ G+ ++V+R SGP + KS+ C P+ +P+PR A +R + DP K
Sbjct: 63 STIYALSTASGRAAIAVVRASGPACVQIYKSL-C-PEAPLPRPRLAVVRTLYDPSQKPSP 120
Query: 85 -VVLDEG-LCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDP 142
VLD G L L+FP GP T+
Sbjct: 121 NTVLDAGALVLYFP-------------GPKTVT--------------------------- 140
Query: 143 VSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG----LRPAEPG 198
GED E +HG A++ ++L ++++ +R AEPG
Sbjct: 141 ---------------------GEDVLELHLHGGPAIVKSVLSSISRTNNPDYTVRYAEPG 179
Query: 199 EFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLAS 258
EF++RAF NN+LDL Q EALGD + A+TE QR+ A+ L + Y +WR +L +
Sbjct: 180 EFTRRAFMNNRLDLPQIEALGDTLSADTEQQRRLAVRGASDALSKRYEQWRHQLLYARGE 239
Query: 259 VEAYIDFSEDEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK 309
+EA IDFSED+ + ++++++V +QV L I HI+ ++K G +R+GIK
Sbjct: 240 LEALIDFSEDQHFDESTEDLVSSVAAQVRALRAQIALHIQNASK-GELLRNGIK 292
>gi|316931724|ref|YP_004106706.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris DX-1]
gi|315599438|gb|ADU41973.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris DX-1]
Length = 442
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 118/336 (35%), Positives = 173/336 (51%), Gaps = 71/336 (21%)
Query: 103 VSVIRVSGPDTLNALKSMACYPDQKVSKPRYA---SLRNIVDPVSEVVLDEGLCLWFPKP 159
+++ R+SGP N + ++ + PR A LRN S ++D+G+ LWFP P
Sbjct: 20 IAIFRLSGPQAGNVVTALTG----SLPAPRRAVRCDLRN----RSGEMIDDGVALWFPGP 71
Query: 160 NSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALG 219
S TGED E +HGS AV A++ L+ G+RPAEPGEF++RAF N KLDLT+ E L
Sbjct: 72 ASATGEDVAELHIHGSRAVAAALIKTLSAFEGVRPAEPGEFTRRAFENGKLDLTEAEGLD 131
Query: 220 DLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTV 279
DLI A+TE+QR++AL Q++G L WR I+E+LA VEA IDFS++ + +++
Sbjct: 132 DLIHADTEVQRRQALRQLQGVLGDRARRWRDQIIEALALVEAGIDFSDEGDVAADLMAPA 191
Query: 280 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRS 339
R+++ L I + + + G ++R G+ V+ +A N +S
Sbjct: 192 RAKIAALSAEIAEVLAEQGQ-GEKLRDGM--VVAIAGPP----------------NVGKS 232
Query: 340 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGT 399
++ R + V + P+ G T
Sbjct: 233 TLIN-------------------RLARRDVAIVSPHAG---------------------T 252
Query: 400 TRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TRDVIE HLD+GGYPV ++DTAGLR + D IE EG
Sbjct: 253 TRDVIEVHLDLGGYPVTVIDTAGLR-DSDDPIEQEG 287
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 11/72 (15%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYA---SLRNIVDPVSK 84
TIFAL++G +++ R+SGP N + ++ +P PR A LRN S
Sbjct: 6 QTIFALATGPLPSAIAIFRLSGPQAGNVVTALTG----SLPAPRRAVRCDLRN----RSG 57
Query: 85 VVLDEGLCLWFP 96
++D+G+ LWFP
Sbjct: 58 EMIDDGVALWFP 69
>gi|387771313|ref|ZP_10127479.1| tRNA modification GTPase TrmE [Pasteurella bettyae CCUG 2042]
gi|386902518|gb|EIJ67358.1| tRNA modification GTPase TrmE [Pasteurella bettyae CCUG 2042]
Length = 453
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 123/332 (37%), Positives = 173/332 (52%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSGP L+ L + A K KPR A+ D +LD+G+ L+F
Sbjct: 14 GRGGVGILRVSGP--LSTLVAQAVVG--KELKPRMANYLPFKDE-DGTILDQGIALFFKG 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED EFQ HG V++ +L + ++ G+R A PGEFS++AF N+KLDL Q EA+
Sbjct: 69 PNSFTGEDVVEFQGHGGQIVLDLLLKRILQVKGVRLARPGEFSEQAFLNDKLDLAQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G E ++ VEA IDF ++EI D + +
Sbjct: 129 ADLIDATSEQAARSALKSLQGEFSHKVHELVDAVIYLRTYVEAAIDFPDEEI--DFLAD- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE H++ +IIE L+ VR
Sbjct: 186 ---------GKIEGHLK-------------------------------DIIEQ--LDRVR 203
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 204 LEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T ++
Sbjct: 249 TTRDVLREHIHIDGMPLHIIDTAGLRDATDEV 280
>gi|354546926|emb|CCE43658.1| hypothetical protein CPAR2_213010 [Candida parapsilosis]
Length = 493
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 120/348 (34%), Positives = 175/348 (50%), Gaps = 76/348 (21%)
Query: 100 KCGVSVIRVSGPDT---LNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWF 156
K ++V+R+SGP N L PD +V+K R L ++ D +LDE L ++F
Sbjct: 31 KSAIAVVRISGPQASYVYNTLTKTKTAPDHRVAKVR--KLYSVKDST---LLDEALTVFF 85
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG------LRPAEPGEFSKRAFFNNKL 210
PN++TG D E +HG A+I A+L ++ +L +R A+ GEFS +AF N K
Sbjct: 86 KSPNTYTGLDLLELHLHGGTAIIKAVLKSIRELHDPTNGKIIRQADHGEFSHQAFINGKY 145
Query: 211 DLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEI 270
DLT E + ++I AETE QR +L M G K L+ +WRQ ILE++A++ IDF ED+
Sbjct: 146 DLTALEGISEMINAETESQRMASLASMSGQTKDLFVKWRQGILENVANLTTLIDFGEDQD 205
Query: 271 IE--DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI 328
+ D++ + V + + +L I +
Sbjct: 206 LSEADSLFHDVETSISKLEEEIRTY----------------------------------- 230
Query: 329 IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQK 388
L V+S V L+G I+ ++G PN GKSS++N L K
Sbjct: 231 -----LKNVKSSQVLLNG-------------------IQLTLLGPPNAGKSSILNTLTNK 266
Query: 389 QISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR-TTTSDIIETEG 435
+IV+ I GTTRDV++ LDIGGY VIL DTAG+R + +D IE EG
Sbjct: 267 DAAIVSDIAGTTRDVLDIPLDIGGYKVILGDTAGIRLLSEADQIEQEG 314
>gi|190171170|gb|ACE63655.1| ThdF [Citrobacter sp. NZ3872_90]
Length = 439
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISGLKASEVAETVLG----KLPKPRYADYLPFKDEDGSA-LDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 177
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE L SV A +D VR
Sbjct: 178 --------DGKIEAQ--------------------LNSVMADLD-------------AVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q GS+ +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ--GSL-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 273
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++R+SG +++ K+PKPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISGLKASEVAETVLG----KLPKPRYADYLPFKDE-DGSALDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 110
>gi|238899053|ref|YP_002924735.1| GTPase involved in tRNA modification and in thiophene and furan
oxidation [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|259495842|sp|C4K7P4.1|MNME_HAMD5 RecName: Full=tRNA modification GTPase MnmE
gi|229466813|gb|ACQ68587.1| GTPase involved in tRNA modification and in thiophene and furan
oxidation [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 458
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 128/355 (36%), Positives = 183/355 (51%), Gaps = 79/355 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++R+SG A K++A K+ + RYA DP + LD+G+ L+FP
Sbjct: 15 GRGGIGILRISG----CATKTVAKEILGKLPRARYAEYLAFKDPEGNI-LDQGIALYFPA 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGL--RPAEPGEFSKRAFFNNKLDLTQTE 216
P+SFTGED E Q HG +++ +L A+ LP + R A PGEFS+RAF N+KLDL Q E
Sbjct: 70 PHSFTGEDVLELQGHGGPIILDLLLKAILNLPDVCVRIARPGEFSERAFLNDKLDLVQAE 129
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYI----DFSEDEIIE 272
A+ DLI A TE + ALH +KG ++ ++ESL + YI DFS++EI
Sbjct: 130 AVADLIDASTEQAARCALHSLKGTFSLRINQ----LIESLTYLRVYIEASMDFSDEEI-- 183
Query: 273 DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDN 332
+ L+ G IE + D +I D
Sbjct: 184 -DFLS---------DGKIETQL-------------------------------DRVIHD- 201
Query: 333 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
L+ VRS+ Q G +R G+K VI G PNVGKSSL+N L ++ +I
Sbjct: 202 -LDKVRSEARQ---------------GQLLREGMKIVIAGRPNVGKSSLLNALTGRETAI 245
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI----IETEGNLLEKNNQ 443
VT IPGTTRDV+ + + I G P+ ++DTAGLR T + IE N +E+ ++
Sbjct: 246 VTQIPGTTRDVLREQIQINGMPLHIIDTAGLRETEDPVEKIGIERAWNEIEQADR 300
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 107/231 (46%), Gaps = 32/231 (13%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ G+ ++R+SG A K++A K+P+ RYA DP + L
Sbjct: 5 DTIVAQATPIGRGGIGILRISG----CATKTVAKEILGKLPRARYAEYLAFKDPEGNI-L 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPD--QKVSKPRYASLRNIV 140
D+G+ L+FP H G V+ + GP L+ LK++ PD ++++P S R +
Sbjct: 60 DQGIALYFPAPHSFTGEDVLELQGHGGPIILDLLLKAILNLPDVCVRIARPGEFSERAFL 119
Query: 141 DPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAV-INAILGALTKLPGLRPAEPGE 199
+ ++V E + ++ C + G+ ++ IN ++ +LT L
Sbjct: 120 NDKLDLVQAEAVADLI-DASTEQAARCALHSLKGTFSLRINQLIESLTYL---------- 168
Query: 200 FSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQ 250
R + +D + E + L + E Q + +H +L ++ SE RQ
Sbjct: 169 ---RVYIEASMDFSD-EEIDFLSDGKIETQLDRVIH----DLDKVRSEARQ 211
>gi|312128799|ref|YP_003993673.1| tRNA modification gtpase trme [Caldicellulosiruptor hydrothermalis
108]
gi|311778818|gb|ADQ08304.1| tRNA modification GTPase TrmE [Caldicellulosiruptor hydrothermalis
108]
Length = 455
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 132/343 (38%), Positives = 179/343 (52%), Gaps = 73/343 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMA---CYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLW 155
G G+ ++R+SG + + + Y K RYA+L ++ D + +DE + +
Sbjct: 14 GTGGIGIVRISGKSAFDIAEKLIRSRKYKSIKDIPVRYAALVDVYD--GDEFVDEAILIK 71
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
F P+S+TGED E Q HG + V+ IL A K G R A PGEF+KRAF N ++DL+Q
Sbjct: 72 FKSPHSYTGEDIVEIQSHGGMVVLKRILEAAIK-NGARHAMPGEFTKRAFLNGRIDLSQA 130
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
EA+ D+I ++T L +Q A KQL Q I E I +
Sbjct: 131 EAVIDIINSKTRLLQQNAA-------KQLKGMLSQRIEE----------------ISQLL 167
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSE---DEIIEDN 332
LN V AS+EA IDFSE DE+ D
Sbjct: 168 LNLV-----------------------------------ASIEASIDFSEHEVDEVSHDE 192
Query: 333 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
IL+T+ + + IEK I+ S + G I+SGI +VIVG PNVGKSSL+N L +++ +I
Sbjct: 193 ILSTIDGALAK----IEKLIK-SYETGKAIKSGIYTVIVGRPNVGKSSLLNRLLKEEKAI 247
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
VT IPGTTRDVIE+ LDI G P+IL DTAG+R T DI+E G
Sbjct: 248 VTDIPGTTRDVIEEVLDIEGLPIILADTAGVR-KTEDIVEKIG 289
>gi|290554|gb|AAA62057.1| 50 kD protein [Escherichia coli]
Length = 454
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 168/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ + I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLRXXIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|190171296|gb|ACE63718.1| ThdF [Cronobacter sakazakii]
gi|190171316|gb|ACE63728.1| ThdF [Cronobacter sakazakii]
gi|190171318|gb|ACE63729.1| ThdF [Cronobacter sakazakii]
gi|190171328|gb|ACE63734.1| ThdF [Cronobacter sakazakii]
gi|190171344|gb|ACE63742.1| ThdF [Cronobacter sakazakii]
Length = 439
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 168/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + +++ K+ K RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + L G+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLSGVRIARPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 122 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLSD 178
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 179 ---------GKIEAQL-------------------------------NEVIGD--LDAVR 196
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 197 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 273
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFP 96
G+ GV ++RVSG + +++ K+PK RYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFP 60
>gi|158321890|ref|YP_001514397.1| tRNA modification GTPase TrmE [Alkaliphilus oremlandii OhILAs]
gi|166988168|sp|A8MKR9.1|MNME_ALKOO RecName: Full=tRNA modification GTPase MnmE
gi|158142089|gb|ABW20401.1| tRNA modification GTPase TrmE [Alkaliphilus oremlandii OhILAs]
Length = 461
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 120/352 (34%), Positives = 186/352 (52%), Gaps = 65/352 (18%)
Query: 87 LDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKV---SKPRYASLRNIVDPV 143
+D+ + G+ G+ ++R+SG + + + D KV K R + +I+DP
Sbjct: 3 IDDTIAAIATAPGEAGIGIVRISGEKAIELIDKIFKSKDHKVLSQYKSRRITYGHIIDPK 62
Query: 144 SEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKR 203
+E V+DE L + PN++T ED E HG + + IL + ++ G R AEPGEF+KR
Sbjct: 63 TEKVVDEVLVSYMKGPNTYTREDIVEINCHGGMIPVKNILELVLRV-GARMAEPGEFTKR 121
Query: 204 AFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYI 263
AF N ++DL Q EA+ DLI A+TE AL
Sbjct: 122 AFLNGRIDLAQAEAIMDLISAKTEKGFDVALS---------------------------- 153
Query: 264 DFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDF 323
QL GS+ K + ++R K + LA VE IDF
Sbjct: 154 ---------------------QLEGSLSKKV-------AKVRE--KLLDMLAHVEVSIDF 183
Query: 324 SEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMN 383
+ED++ ++ L+ + ++ +++ G I+K ++ ++ G IR G+ +VIVG+PNVGKSSL+N
Sbjct: 184 AEDDV-DEVALDYLLNKSLEVEGDIQKLLDTAD-TGKIIREGLSTVIVGKPNVGKSSLLN 241
Query: 384 FLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
L ++ +IVT +PGTTRD+IE+HL+I G P+ L+DTAG+R T DI+E G
Sbjct: 242 ALVRESRAIVTDVPGTTRDIIEEHLNIKGIPLRLIDTAGIR-DTEDIVEKIG 292
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 142/293 (48%), Gaps = 67/293 (22%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKV---PKPRYASLRNIVD 80
+ I +TI A+++ G+ G+ ++R+SG + + + D KV K R + +I+D
Sbjct: 1 MYIDDTIAAIATAPGEAGIGIVRISGEKAIELIDKIFKSKDHKVLSQYKSRRITYGHIID 60
Query: 81 PVSKVVLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIV 140
P ++ V+DE L + GP+T
Sbjct: 61 PKTEKVVDEVLVSYM-------------KGPNT--------------------------- 80
Query: 141 DPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEF 200
+T ED E HG + + IL + ++ G R AEPGEF
Sbjct: 81 ---------------------YTREDIVEINCHGGMIPVKNILELVLRV-GARMAEPGEF 118
Query: 201 SKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVE 260
+KRAF N ++DL Q EA+ DLI A+TE AL Q++G+L + ++ R+ +L+ LA VE
Sbjct: 119 TKRAFLNGRIDLAQAEAIMDLISAKTEKGFDVALSQLEGSLSKKVAKVREKLLDMLAHVE 178
Query: 261 AYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
IDF+ED+ +++ L+ + ++ +++ G I+K ++ ++ G IR G+ +VI
Sbjct: 179 VSIDFAEDD-VDEVALDYLLNKSLEVEGDIQKLLDTAD-TGKIIREGLSTVIV 229
>gi|336313987|ref|ZP_08568909.1| tRNA modification GTPase TrmE [Rheinheimera sp. A13L]
gi|335881926|gb|EGM79803.1| tRNA modification GTPase TrmE [Rheinheimera sp. A13L]
Length = 454
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 118/334 (35%), Positives = 170/334 (50%), Gaps = 69/334 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP A+ ++A KV KPR A +D + LD+G+ L+FP
Sbjct: 15 GRAGVGIIRVSGP----AVSAVASAILGKVPKPRTAEYLPFLD-AEQQTLDQGIALYFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + ++ +R A PGEFS+RAF N+KLDLTQ EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVLLDMLLRRVLEMKDVRIARPGEFSERAFLNDKLDLTQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + A+H ++G +
Sbjct: 130 ADLIDASSEQAARSAMHSLQGEFSR----------------------------------- 154
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI--IEDNILNT 336
++H +EK I L RI VEA IDF ++EI + D +
Sbjct: 155 ------KIHDLVEKVIYL------RI-----------YVEAAIDFPDEEIDFLSDGKVAG 191
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+ ++ I+K G +R G++ VI G PN GKSSL+N L ++ +IVT I
Sbjct: 192 DLADIISDLAGIQKQA----TQGSILREGMRVVIAGRPNAGKSSLLNALAGREAAIVTEI 247
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRDV+ +H+ I G P+ ++DTAGLR T +
Sbjct: 248 AGTTRDVLREHIHIDGMPLHIIDTAGLREATDKV 281
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP A+ ++A KVPKPR A +D + L
Sbjct: 5 DTIAAQATATGRAGVGIIRVSGP----AVSAVASAILGKVPKPRTAEYLPFLD-AEQQTL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLNA-LKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ L+FP + G V+ + GP L+ L+ + D ++++P S R ++
Sbjct: 60 DQGIALYFPGPNSFTGEDVLELQGHGGPVLLDMLLRRVLEMKDVRIARPGEFSERAFLN 118
>gi|397677064|ref|YP_006518602.1| tRNA modification GTPase mnmE [Zymomonas mobilis subsp. mobilis
ATCC 29191]
gi|395397753|gb|AFN57080.1| tRNA modification GTPase mnmE [Zymomonas mobilis subsp. mobilis
ATCC 29191]
Length = 434
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 119/337 (35%), Positives = 163/337 (48%), Gaps = 64/337 (18%)
Query: 101 CGVSVIRVSGPDTLNALKSMACY-PDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKP 159
G++VIR+SG +A AC +K+ + R A LRN+ DP + LD+ L LW P P
Sbjct: 14 AGIAVIRISG----SAAADTACLLTRKKIPEARRAVLRNLYDPDTGEQLDQSLILWLPAP 69
Query: 160 NSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALG 219
+ TGED E VHG AVI+A+L L KLP LRPAE GEF++RAF N + L + E LG
Sbjct: 70 KTVTGEDLLELHVHGGRAVIDAVLKTLEKLPDLRPAEAGEFTRRAFENGVISLHEAEGLG 129
Query: 220 DLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTV 279
DL+ AET QR+ AL G L + S W+ +L
Sbjct: 130 DLLTAETASQRRAALMMSGGALGRQISAWQDRLL-------------------------- 163
Query: 280 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRS 339
L G IE + + D EDE L ++
Sbjct: 164 -----ALSGQIEASFDFAE-----------------------DIEEDETESRQHLAAMKD 195
Query: 340 QVVQLHGSIEKHIELSNKCGV-RIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ L I +H + N+ + R+R G++ V+ G PN GKS+L+N L + I+I I G
Sbjct: 196 KIAAL---IAEHRQFENRPTMERLRDGLRVVLAGRPNAGKSTLINALTGQDIAITAPIAG 252
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE + G P+ DTAGL + D+IE G
Sbjct: 253 TTRDVIEVSFALKGIPMRFSDTAGLH-ESDDLIEKAG 288
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACY-PDQKVPKPRYASLRNIVDPVSKVV 86
TIFALSSG G++VIR+SG +A AC +K+P+ R A LRN+ DP +
Sbjct: 2 KTIFALSSGRPPAGIAVIRISG----SAAADTACLLTRKKIPEARRAVLRNLYDPDTGEQ 57
Query: 87 LDEGLCLWFP 96
LD+ L LW P
Sbjct: 58 LDQSLILWLP 67
>gi|330813392|ref|YP_004357631.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Candidatus
Pelagibacter sp. IMCC9063]
gi|327486487|gb|AEA80892.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Candidatus
Pelagibacter sp. IMCC9063]
Length = 446
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 121/336 (36%), Positives = 176/336 (52%), Gaps = 74/336 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G G+++IR+SGP++L K + + KPR A L+ D E++ DEG+ +W+PK
Sbjct: 11 GVSGIAIIRLSGPNSLTITKDII---HGTIDKPRMALLKTFYDSKKEII-DEGIVVWYPK 66
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
S+TG+D EF VHGS AVIN L L+ + AE GEF+K+AF NNK++L + E++
Sbjct: 67 GQSYTGDDLIEFHVHGSKAVINKFLNELSLRSDCQLAEAGEFTKQAFLNNKINLYEAESI 126
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL+ AETE QR +AL ++K N L+ +WR+ IL+
Sbjct: 127 ADLLNAETEGQRIQAL-RLK-NSSPLFMKWREQILD------------------------ 160
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDE----IIEDNIL 334
VRS KC EA IDFSE++ I+E N+
Sbjct: 161 VRS-----------------KC-----------------EAAIDFSEEDLPASILEGNV- 185
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
++ ++ I ++ +K G +R G K I G PN GKSS +N L +++ +IV+
Sbjct: 186 ----QKIKEISQEITVMLD-DSKVGEIMREGFKIAIFGPPNSGKSSFLNLLAKRKAAIVS 240
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDVIE L I +PV+L DTAG+R + I
Sbjct: 241 EIKGTTRDVIEVQLQIKNFPVVLSDTAGIRAAKNKI 276
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TI+ALS+ G G+++IR+SGP++L K + + KPR A L+ D K ++D
Sbjct: 2 TIYALSTPPGVSGIAIIRLSGPNSLTITKDII---HGTIDKPRMALLKTFYDS-KKEIID 57
Query: 89 EGLCLWFPR 97
EG+ +W+P+
Sbjct: 58 EGIVVWYPK 66
>gi|419845990|ref|ZP_14369248.1| tRNA modification GTPase TrmE [Haemophilus parainfluenzae HK2019]
gi|386414620|gb|EIJ29172.1| tRNA modification GTPase TrmE [Haemophilus parainfluenzae HK2019]
Length = 453
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 121/332 (36%), Positives = 170/332 (51%), Gaps = 64/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++RVSGP L +++ K KPR A D VLD+G+ L+F
Sbjct: 13 GRGGIGILRVSGPKALEVAQAVLV---GKCPKPRMADYLPFKD-ADGTVLDQGIALYFKS 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L + +L G+R A PGEFS++AF N+KLDL Q EA+
Sbjct: 69 PNSFTGEDVLELQGHGGQVVLDLLLKRILQLDGVRLARPGEFSEQAFLNDKLDLAQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G ++ ++ VEA IDF ++EI D + +
Sbjct: 129 ADLIDATSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEASIDFPDEEI--DFLAD- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + EII N L+ VR
Sbjct: 186 ---------GKIEAKLR-------------------------------EII--NQLDLVR 203
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S+ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 204 SEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T ++
Sbjct: 249 TTRDVLREHIHIDGMPLHIIDTAGLREATDEV 280
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP L +++ K PKPR A D
Sbjct: 1 MKETIVAQATAPGRGGIGILRVSGPKALEVAQAVLV---GKCPKPRMADYLPFKD-ADGT 56
Query: 86 VLDEGLCLWF 95
VLD+G+ L+F
Sbjct: 57 VLDQGIALYF 66
>gi|325577780|ref|ZP_08148055.1| tRNA modification GTPase TrmE [Haemophilus parainfluenzae ATCC
33392]
gi|325160525|gb|EGC72651.1| tRNA modification GTPase TrmE [Haemophilus parainfluenzae ATCC
33392]
Length = 452
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 121/332 (36%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++RVSGP L +++ K KPR A D VLD+G+ L+F
Sbjct: 13 GRGGIGILRVSGPKALEVAQAVLG----KCPKPRMADYLPFKD-ADGTVLDQGIALYFKS 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L + +L G+R A PGEFS++AF N+KLDL Q EA+
Sbjct: 68 PNSFTGEDVLELQGHGGQVVLDLLLKRILQLDGVRLARPGEFSEQAFLNDKLDLAQAEAI 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G ++ ++ VEA IDF ++EI D + +
Sbjct: 128 ADLIDATSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEASIDFPDEEI--DFLAD- 184
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + EII N L+ VR
Sbjct: 185 ---------GKIEAKLR-------------------------------EII--NQLDLVR 202
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S+ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 203 SEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 247
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T ++
Sbjct: 248 TTRDVLREHIHIDGMPLHIIDTAGLREATDEV 279
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP L +++ K PKPR A D
Sbjct: 1 MKETIVAQATAPGRGGIGILRVSGPKALEVAQAVLG----KCPKPRMADYLPFKD-ADGT 55
Query: 86 VLDEGLCLWF 95
VLD+G+ L+F
Sbjct: 56 VLDQGIALYF 65
>gi|429119371|ref|ZP_19180093.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
sakazakii 680]
gi|426326152|emb|CCK10830.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Cronobacter
sakazakii 680]
Length = 454
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 168/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + +++ K+ K RYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + L G+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLSGVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NEVIGD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++RVSG + +++ K+PK RYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRVSGQQARDVAQAVLG----KLPKARYADYLPFKD-ADGTAL 59
Query: 88 DEGLCLWFP 96
D+G+ LWFP
Sbjct: 60 DQGIALWFP 68
>gi|414164592|ref|ZP_11420839.1| tRNA modification GTPase TrmE [Afipia felis ATCC 53690]
gi|410882372|gb|EKS30212.1| tRNA modification GTPase TrmE [Afipia felis ATCC 53690]
Length = 440
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 118/334 (35%), Positives = 176/334 (52%), Gaps = 67/334 (20%)
Query: 103 VSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSF 162
++++RVSGP AL+ + C ++ +PR A+L + P + + D+ + LWFP P+S
Sbjct: 20 IAIVRVSGPRAAAALEIL-C---GRLPRPRLATLATLTSPETGPI-DQAVALWFPAPHSA 74
Query: 163 TGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLI 222
TGED EFQ+HG AVI A+ AL K+ GLRPAEPGEF++RAF N KL DL
Sbjct: 75 TGEDVAEFQLHGGRAVIAALFAALGKIDGLRPAEPGEFTRRAFENGKL---------DLT 125
Query: 223 QAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQ 282
+AE D++I + +
Sbjct: 126 EAE----------------------------------------GLDDLIHADTDRQRKQA 145
Query: 283 VVQLHGSIEKHIELSNKCGVRIRSGIKSVI-CLASVEAYIDFSEDEIIEDNILNTVRSQV 341
+ QL G + G R ++ + +I +A VEA IDFS++ + + ++ ++V
Sbjct: 146 LRQLQGLL----------GHRAQNWRRQIIEAMALVEAGIDFSDEGDVSEELMAPALARV 195
Query: 342 VQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTR 401
L I++ + S + R+R G++ I G PN GKS+L+N L +++ +IV+ GTTR
Sbjct: 196 DALKNEIKETLAASAQS-ERLREGLQVAIAGPPNAGKSTLLNRLARREAAIVSPHAGTTR 254
Query: 402 DVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
DVIE HLD+ GYPV L+DTAGLR T D +E EG
Sbjct: 255 DVIEVHLDLDGYPVTLIDTAGLRETI-DPVEQEG 287
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
+ TI+AL+SG ++++RVSGP AL+ + C ++P+PR A+L + P + +
Sbjct: 5 QPTIYALASGRPPSAIAIVRVSGPRAAAALEIL-C---GRLPRPRLATLATLTSPETGPI 60
Query: 87 LDEGLCLWFPR-HGKCGVSV 105
D+ + LWFP H G V
Sbjct: 61 -DQAVALWFPAPHSATGEDV 79
>gi|52424535|ref|YP_087672.1| tRNA modification GTPase TrmE [Mannheimia succiniciproducens
MBEL55E]
gi|81387495|sp|Q65VC3.1|MNME_MANSM RecName: Full=tRNA modification GTPase MnmE
gi|52306587|gb|AAU37087.1| ThdF protein [Mannheimia succiniciproducens MBEL55E]
Length = 454
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSGP K++ K KPR A+ D +LD+G+ L+F
Sbjct: 15 GRGGVGILRVSGPLATEVAKAVV----DKELKPRMANYLPFKDE-DGTILDQGIALYFKS 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED EFQ HG V++ +L + ++ G+R A PGEFS++AF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVVEFQGHGGQVVLDLLLKRILQVKGVRLARPGEFSEQAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G + ++ ++ VEA IDF ++EI D + +
Sbjct: 130 ADLINASSEQAARSALKSLQGEFSKKINQLVDSVIYLRTYVEAAIDFPDEEI--DFLAD- 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE H L++ G L+ VR
Sbjct: 187 ---------GKIEGH--LNDLIGQ-------------------------------LDKVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S+ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 SEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDATDEV 281
>gi|395789041|ref|ZP_10468571.1| tRNA modification GTPase mnmE [Bartonella taylorii 8TBB]
gi|395431175|gb|EJF97202.1| tRNA modification GTPase mnmE [Bartonella taylorii 8TBB]
Length = 435
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 116/329 (35%), Positives = 162/329 (49%), Gaps = 64/329 (19%)
Query: 102 GVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNS 161
GV+VIR+SGP +N +K++ Y + K R+ N+ LD L ++FP P+S
Sbjct: 15 GVAVIRLSGPHVVNVVKTLCGY----LPKARFMHYGNLT-ARDGSFLDSALTVFFPAPHS 69
Query: 162 FTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDL 221
FTGEDC EF +HG AV+N L L+ G R AE GEFS+RAF KLDL Q E L DL
Sbjct: 70 FTGEDCAEFHLHGGKAVVNRFLDELSTFTGCRIAEAGEFSRRAFIEGKLDLVQAEGLADL 129
Query: 222 IQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRS 281
I AETE QR+ A+ G+L LY +WR ++++ A +EA +DFS++ I ++I + +
Sbjct: 130 IDAETESQRRLAVMGTSGHLTTLYRDWRHKLIKARAFIEAELDFSDEADIPNSISDEIWK 189
Query: 282 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQV 341
+ + S+ KHI+ + + +R G+K VI A
Sbjct: 190 DMEEFCASLRKHIDEGERASI-LRDGLKIVIAGAP------------------------- 223
Query: 342 VQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTR 401
SG S+I N L + I+IVT GTTR
Sbjct: 224 ---------------------NSGKSSII------------NRLAGRPIAIVTEEAGTTR 250
Query: 402 DVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
D +E L GG PV + DTAG R T + I
Sbjct: 251 DALEMKLVFGGLPVFVTDTAGFRETENKI 279
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFA+SSG GV+VIR+SGP +N +K++ Y +PK R+ N+ L
Sbjct: 2 DTIFAVSSGLLPSGVAVIRLSGPHVVNVVKTLCGY----LPKARFMHYGNLT-ARDGSFL 56
Query: 88 DEGLCLWFP 96
D L ++FP
Sbjct: 57 DSALTVFFP 65
>gi|422016765|ref|ZP_16363344.1| tRNA modification GTPase TrmE [Providencia burhodogranariea DSM
19968]
gi|414092002|gb|EKT53682.1| tRNA modification GTPase TrmE [Providencia burhodogranariea DSM
19968]
Length = 454
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 122/336 (36%), Positives = 177/336 (52%), Gaps = 73/336 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSGP +++ K+ KPRYA D V++ VLD+G+ L+FP
Sbjct: 15 GRGGVGILRVSGPKAALVAQTILG----KLPKPRYADYLPFRD-VNDTVLDQGIALFFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + + G+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLRRILTIDGIRIANPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLAS----VEAYIDFSEDEIIEDN 274
DLI A +E + A++ ++G +S ++E+L + VEA IDF ++EI +
Sbjct: 130 ADLIDASSEQAARSAMNSLQGA----FSAQIHHMVETLTTLRIYVEAAIDFPDEEI---D 182
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
L+ G IE + DE+I D L
Sbjct: 183 FLS---------DGKIEAKL-------------------------------DEVIAD--L 200
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
VRS+ Q G +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 201 GRVRSEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVT 245
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 246 DIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++RVSGP +++ K+PKPRYA D V+ VL
Sbjct: 5 DTIVAQATPPGRGGVGILRVSGPKAALVAQTILG----KLPKPRYADYLPFRD-VNDTVL 59
Query: 88 DEGLCLWFP 96
D+G+ L+FP
Sbjct: 60 DQGIALFFP 68
>gi|296445001|ref|ZP_06886962.1| tRNA modification GTPase TrmE [Methylosinus trichosporium OB3b]
gi|296257422|gb|EFH04488.1| tRNA modification GTPase TrmE [Methylosinus trichosporium OB3b]
Length = 435
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 173/340 (50%), Gaps = 80/340 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ ++VIR+SGP ++++A PR+A + DP S +D GL L+FP
Sbjct: 14 GRAAIAVIRLSGPLVSPLVEAVAGL----TPTPRFAHYVRLRDPRSGETIDRGLLLFFPV 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
+S TGED E Q+HG AVI+ L ++ PGLR AEPGEF++R+F N ++DL+Q E L
Sbjct: 70 ESSPTGEDYAELQIHGGRAVIDGFLTLFSETPGLRLAEPGEFARRSFANGRMDLSQVEGL 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET Q
Sbjct: 130 ADLIDAETASQ------------------------------------------------- 140
Query: 279 VRSQVVQ-LHGSIEKHIELSNKCGVRIRSGIKSVICLAS-VEAYIDFSEDEIIEDNILNT 336
R Q +Q L G + + +E G R ++VIC A+ VEA +DFS++
Sbjct: 141 -RRQALQALGGGLRRRVE-----GWR-----EAVICGAALVEAELDFSDE--------GD 181
Query: 337 VRSQVVQLHGSIEKHI----ELSNKCGV--RIRSGIKSVIVGEPNVGKSSLMNFLCQKQI 390
VR QL +E E++ + R+R G +++G PN GKS+L+N L ++ +
Sbjct: 182 VRDPAEQLRPLLEPQARDMEEMARQAPAAERLRDGFLVLLLGPPNSGKSTLLNALARRDV 241
Query: 391 SIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
+IV++IPGTTRD+IE HLD+GG PV L+DTAGLR +I
Sbjct: 242 AIVSAIPGTTRDMIEVHLDLGGLPVTLVDTAGLREAEDEI 281
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFAL+SG G+ ++VIR+SGP ++++A P PR+A + DP S +
Sbjct: 4 DTIFALASGAGRAAIAVIRLSGPLVSPLVEAVAGL----TPTPRFAHYVRLRDPRSGETI 59
Query: 88 DEGLCLWFP 96
D GL L+FP
Sbjct: 60 DRGLLLFFP 68
>gi|407789814|ref|ZP_11136913.1| tRNA modification GTPase TrmE [Gallaecimonas xiamenensis 3-C-1]
gi|407206021|gb|EKE75984.1| tRNA modification GTPase TrmE [Gallaecimonas xiamenensis 3-C-1]
Length = 448
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 123/345 (35%), Positives = 172/345 (49%), Gaps = 82/345 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKS-MACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ GV +IRVSGP ++ + P K RYA N +D VLD+G+ L+FP
Sbjct: 13 GRGGVGIIRVSGPQAAAVAQARLGTLP-----KARYAHYGNFLDQ-DGTVLDQGIALYFP 66
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
PNSFTGED E Q HG +++ +L A+ +PGLR A PGEFS+RAF N+KLDL Q EA
Sbjct: 67 GPNSFTGEDVLELQGHGGPVILDMLLKAVLSVPGLRLARPGEFSERAFLNDKLDLAQAEA 126
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ D +IE +
Sbjct: 127 IAD-------------------------------------------------LIEASSEQ 137
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNI- 333
RS V L G + RI+ ++S+I L VEA IDF E+EI + D
Sbjct: 138 AARSAVHSLQGDFSR----------RIQGLVESLIHLRIYVEAAIDFPEEEIDFLSDGKV 187
Query: 334 ---LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQI 390
L +R+++ ++ S + G +R G++ VI G PN GKSSL+N L +++
Sbjct: 188 AGDLAGIRAELAA--------VKASARQGSLLRDGMRVVIAGRPNAGKSSLLNALAGQEL 239
Query: 391 SIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
+IVT I GTTRDV+ +H+ I G P+ ++DTAGLR T D +E G
Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR-DTGDAVEKIG 283
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 10/121 (8%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ TI A+++ G+ GV +IRVSGP ++A +PK RYA N +D
Sbjct: 1 MSETIAAIATATGRGGVGIIRVSGPQA----AAVAQARLGTLPKARYAHYGNFLDQ-DGT 55
Query: 86 VLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLNA-LKSMACYPDQKVSKPRYASLRNIV 140
VLD+G+ L+FP + G V+ + GP L+ LK++ P ++++P S R +
Sbjct: 56 VLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDMLLKAVLSVPGLRLARPGEFSERAFL 115
Query: 141 D 141
+
Sbjct: 116 N 116
>gi|67540704|ref|XP_664126.1| hypothetical protein AN6522.2 [Aspergillus nidulans FGSC A4]
gi|40738672|gb|EAA57862.1| hypothetical protein AN6522.2 [Aspergillus nidulans FGSC A4]
gi|259480093|tpe|CBF70910.1| TPA: mitochondrial GTPase (Mss1), putative (AFU_orthologue;
AFUA_6G04950) [Aspergillus nidulans FGSC A4]
Length = 614
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 115/344 (33%), Positives = 182/344 (52%), Gaps = 75/344 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEV------VLDEG- 151
G+ ++V+RVSGP ++ +++ P + +PR A++R I DP S+ +LD G
Sbjct: 71 GRAAIAVVRVSGPACVSIYQALC--PKAPLPRPRVAAVRTIYDPASDEPCGQADILDAGA 128
Query: 152 LCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG----LRPAEPGEFSKRAFFN 207
L L+ P P + TGED EF +HG A++ ++L A++K G +R AEPGEF++RAF N
Sbjct: 129 LVLYMPGPKTATGEDVLEFHLHGGPAIVKSVLSAISKTSGKEHSVRYAEPGEFTRRAFMN 188
Query: 208 NKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSE 267
++L+L Q EALGD + A+TE QR+ A+ L + Y +W
Sbjct: 189 DRLELPQIEALGDTLAADTEQQRRLAVRGASDALSKRYEKW------------------- 229
Query: 268 DEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDE 327
R Q++ G +E A IDFSED+
Sbjct: 230 ------------RQQLLYARGELE---------------------------ALIDFSEDQ 250
Query: 328 IIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNF 384
+ D+++ +V +QV L I HI+ ++K G +RSGIK ++G PN GKSSL+N
Sbjct: 251 YFDESSDDLVLSVSTQVRALSRQIALHIQNASK-GELMRSGIKVALLGAPNAGKSSLLNR 309
Query: 385 LCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428
+ ++ +IV++ GTTRD+++ +D+GG+ L D AG+R+ S
Sbjct: 310 IVGREAAIVSTEEGTTRDIVDVGIDLGGWYCKLGDMAGIRSEPS 353
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 152/289 (52%), Gaps = 64/289 (22%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI+ALS+ G+ ++V+RVSGP ++ +++ P +P+PR A++R I DP S
Sbjct: 61 STIYALSTAPGRAAIAVVRVSGPACVSIYQALC--PKAPLPRPRVAAVRTIYDPAS---- 114
Query: 88 DEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVV 147
DE CG + I +G
Sbjct: 115 DE----------PCGQADILDAG------------------------------------- 127
Query: 148 LDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG----LRPAEPGEFSKR 203
L L+ P P + TGED EF +HG A++ ++L A++K G +R AEPGEF++R
Sbjct: 128 ---ALVLYMPGPKTATGEDVLEFHLHGGPAIVKSVLSAISKTSGKEHSVRYAEPGEFTRR 184
Query: 204 AFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYI 263
AF N++L+L Q EALGD + A+TE QR+ A+ L + Y +WRQ +L + +EA I
Sbjct: 185 AFMNDRLELPQIEALGDTLAADTEQQRRLAVRGASDALSKRYEKWRQQLLYARGELEALI 244
Query: 264 DFSEDEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK 309
DFSED+ + D+++ +V +QV L I HI+ ++K G +RSGIK
Sbjct: 245 DFSEDQYFDESSDDLVLSVSTQVRALSRQIALHIQNASK-GELMRSGIK 292
>gi|407975444|ref|ZP_11156349.1| tRNA modification GTPase TrmE [Nitratireductor indicus C115]
gi|407429072|gb|EKF41751.1| tRNA modification GTPase TrmE [Nitratireductor indicus C115]
Length = 437
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 119/325 (36%), Positives = 162/325 (49%), Gaps = 66/325 (20%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+VIR+SGPD AL + + V +PR A LR + VLD GL L+F P
Sbjct: 15 SGVAVIRLSGPDVRTALNDLVGF----VPEPRKAVLRTM-KAEDGTVLDRGLILFFEGPY 69
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDC E Q+HG +AV+ ++L AL R A+ GEF+KR F N K DLT EAL D
Sbjct: 70 SFTGEDCAELQLHGGVAVVKSVLEALGGRENFRAADAGEFTKRGFLNGKFDLTGAEALAD 129
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI A E + Q+ G+
Sbjct: 130 LISA--ETEAQRRFALANGD---------------------------------------- 147
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI-CLASVEAYIDFSEDEIIEDNILNTVRS 339
E+H +L G R +S+I A + A +DFS++E + ++ + +
Sbjct: 148 ----------ERHRQL--YAGWR-----RSLIHAQAMIAAELDFSDEEDVPGSVADAIWQ 190
Query: 340 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGT 399
++ L IE+H + +R G + VI+G PN GKSSLMN L ++ I+IVT GT
Sbjct: 191 ELSALQSEIEEHAGGYRDAEI-VRDGFRVVILGAPNAGKSSLMNALAKRDIAIVTEEAGT 249
Query: 400 TRDVIEKHLDIGGYPVILLDTAGLR 424
TRD++E LDIGG VIL DTAG+R
Sbjct: 250 TRDILETALDIGGVKVILTDTAGIR 274
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
++ TIFALSSG GV+VIR+SGPD AL + + VP+PR A LR +
Sbjct: 1 MRETIFALSSGGLPSGVAVIRLSGPDVRTALNDLVGF----VPEPRKAVLRTM-KAEDGT 55
Query: 86 VLDEGLCLWF 95
VLD GL L+F
Sbjct: 56 VLDRGLILFF 65
>gi|302872910|ref|YP_003841546.1| tRNA modification GTPase TrmE [Caldicellulosiruptor obsidiansis
OB47]
gi|302575769|gb|ADL43560.1| tRNA modification GTPase TrmE [Caldicellulosiruptor obsidiansis
OB47]
Length = 455
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 131/343 (38%), Positives = 178/343 (51%), Gaps = 73/343 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMAC---YPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLW 155
G G+ ++R+SG D + + Y RYA+L ++ D + +DE + +
Sbjct: 14 GTGGIGIVRISGKDAYDVAGKLVKSRKYKSIHDIPVRYAALVDVYD--GDEFVDEAILIK 71
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
F P S+TGED E Q HG + V+ IL A K G R A PGEF+KRAF N K+DL+Q
Sbjct: 72 FKSPRSYTGEDVVEIQSHGGMVVLKRILEAAIK-NGARHAMPGEFTKRAFLNGKIDLSQA 130
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
EA+ D+I ++T+L +Q A KQL Q I E I +
Sbjct: 131 EAVIDIINSKTKLLQQNAA-------KQLKGMLSQRIEE----------------ISQLL 167
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSE---DEIIEDN 332
LN V A++EA IDFSE DE+ D
Sbjct: 168 LNLV-----------------------------------ATIEASIDFSEHEVDEVSHDE 192
Query: 333 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
IL+T+ + + IEK I+ S + G I+SGI +VIVG PNVGKSSL+N L +++ +I
Sbjct: 193 ILSTIDDALAK----IEKLIK-SYETGKAIKSGIYTVIVGRPNVGKSSLLNRLLKEEKAI 247
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
VT IPGTTRDVIE+ LDI G P+IL DTAG+R T D++E G
Sbjct: 248 VTDIPGTTRDVIEEVLDIEGLPIILADTAGVR-RTEDVVEKIG 289
>gi|300725383|ref|YP_003714722.1| GTPase [Xenorhabdus nematophila ATCC 19061]
gi|297631939|emb|CBJ92664.1| GTPase involved in tRNA modification and in thiophene and furan
oxidation [Xenorhabdus nematophila ATCC 19061]
Length = 454
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + + K+ KPRYA D + VLD+G+ L+FP
Sbjct: 15 GRGGVGILRISGRKAAEVAEVVLG----KLPKPRYADYLPFRD-MDGSVLDQGIVLYFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + + G+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTISGVRIANPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + A++ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSAMNSLQGTFSHQVHQMVETLTNLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + DE+I + L+ VR
Sbjct: 186 --------DGKIEAKL-------------------------------DEVIAE--LDNVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
SQ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 SQARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHVIDTAGLREASDEV 281
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG + + K+PKPRYA D + VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGRKAAEVAEVVLG----KLPKPRYADYLPFRD-MDGSVL 59
Query: 88 DEGLCLWFP 96
D+G+ L+FP
Sbjct: 60 DQGIVLYFP 68
>gi|392380901|ref|YP_005030097.1| tRNA modification GTPase [Azospirillum brasilense Sp245]
gi|356875865|emb|CCC96613.1| tRNA modification GTPase [Azospirillum brasilense Sp245]
Length = 443
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 132/215 (61%), Gaps = 5/215 (2%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV+V+RVSGP + +AL ++ P + +PR A+L + DP + LD L L F
Sbjct: 13 GRAGVAVVRVSGPASGDALAALTGKP---LPEPRMATLVRLRDPKTGEALDGALVLRFTA 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E +HG AV+ ++ AL LPGLR AEPGEF++RAF N KLDLT+ EA+
Sbjct: 70 PRSFTGEDVVELHLHGGRAVVAGVVEALATLPGLRVAEPGEFTRRAFENGKLDLTEAEAV 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL+ AET QR++AL QM+G L LY WR+ + SLA +EA IDF DE + + +
Sbjct: 130 ADLVDAETSAQRRQALRQMEGALGTLYDGWRERLTRSLAHIEADIDFP-DEDLPSGVSDA 188
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
R + L I+ H++ + G R+R G+ I
Sbjct: 189 ARPVLDALAAEIDAHLDDRGR-GERLREGLHIAIV 222
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 74/112 (66%), Gaps = 2/112 (1%)
Query: 313 CLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVG 372
LA +EA IDF DE + + + R + L I+ H++ + G R+R G+ IVG
Sbjct: 166 SLAHIEADIDFP-DEDLPSGVSDAARPVLDALAAEIDAHLDDRGR-GERLREGLHIAIVG 223
Query: 373 EPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424
PN GKSSL+N L +++ +IV++ GTTRDVIE HLD+GGYPV+L DTAGLR
Sbjct: 224 APNAGKSSLLNALARREAAIVSARAGTTRDVIEVHLDLGGYPVVLADTAGLR 275
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 22/115 (19%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFAL++ G+ GV+V+RVSGP + +AL ++ P +P+PR A+L + DP + LD
Sbjct: 4 TIFALATAPGRAGVAVVRVSGPASGDALAALTGKP---LPEPRMATLVRLRDPKTGEALD 60
Query: 89 EGLCLWF--PR----------HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKP 131
L L F PR H G +V+ ++++A P +V++P
Sbjct: 61 GALVLRFTAPRSFTGEDVVELHLHGGRAVV-------AGVVEALATLPGLRVAEP 108
>gi|344228251|gb|EGV60137.1| tRNA modification GTPase TrmE [Candida tenuis ATCC 10573]
Length = 478
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 124/348 (35%), Positives = 174/348 (50%), Gaps = 76/348 (21%)
Query: 100 KCGVSVIRVSGPDT---LNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWF 156
+ + VIRVSG + L P ++S SLR I P + ++LDE L L+F
Sbjct: 16 RSAIGVIRVSGSQSEYVFQQLTKTTTTPQHRIS-----SLRQIRSPRTGIILDEALTLFF 70
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKL--PG----LRPAEPGEFSKRAFFNNKL 210
PNS+TGE+ E VHG +A+I ++L + L PG +R A+PGEFS+RAF N +
Sbjct: 71 KGPNSYTGENSLELHVHGGVAIIQSVLKEIKHLHNPGAGINIRYADPGEFSQRAFMNGRA 130
Query: 211 DLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEI 270
DLT+ E + ++I AETE QR AL M G KQL+ EWR +L ++A + IDF ED
Sbjct: 131 DLTELEGIREMIDAETESQRVSALSSMTGKNKQLFMEWRLKVLNNIALLTTVIDFGEDHD 190
Query: 271 IED--NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI 328
I++ ++ V S + +L I + ++
Sbjct: 191 IDEVGQLVEDVNSNIQELRLQIFEFLK--------------------------------- 217
Query: 329 IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQK 388
T RSQ++ L G I+ ++G PN GKSSL+N L K
Sbjct: 218 ------KTERSQIL-LKG-------------------IQMTLLGPPNAGKSSLLNALANK 251
Query: 389 QISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT-SDIIETEG 435
+IV+SI GTTRD I+ LDI GY V+ DTAG+R +D IE EG
Sbjct: 252 DAAIVSSIAGTTRDAIDIPLDISGYKVVAGDTAGVRDIDLADEIEAEG 299
>gi|378981441|ref|YP_005229582.1| tRNA modification GTPase [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|402783256|ref|YP_006638802.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Klebsiella
pneumoniae subsp. pneumoniae 1084]
gi|421918884|ref|ZP_16348396.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|364520852|gb|AEW63980.1| tRNA modification GTPase [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|402544089|gb|AFQ68238.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Klebsiella
pneumoniae subsp. pneumoniae 1084]
gi|410118837|emb|CCM91021.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
Length = 436
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 115/328 (35%), Positives = 167/328 (50%), Gaps = 65/328 (19%)
Query: 103 VSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSF 162
+ ++R+SG + +++ K+ KPRYA D V LD+G+ LWFP PNSF
Sbjct: 1 MGILRISGLKARDVAQAVLG----KLPKPRYADYLPFND-VDGTPLDQGIALWFPGPNSF 55
Query: 163 TGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLI 222
TGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+ DLI
Sbjct: 56 TGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAIADLI 115
Query: 223 QAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQ 282
A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 116 DASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD---- 168
Query: 283 VVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVV 342
G IE + +E++ D L+ VR++
Sbjct: 169 -----GKIEAQL-------------------------------NEVMAD--LDAVRAEAR 190
Query: 343 QLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRD 402
Q G +R G+K VI G PN GKSSL+N L ++ +IVT I GTTRD
Sbjct: 191 Q---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 235
Query: 403 VIEKHLDIGGYPVILLDTAGLRTTTSDI 430
V+ +H+ I G P+ ++DTAGLR ++
Sbjct: 236 VLREHIHIDGMPLHIIDTAGLRDANDEV 263
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 10/105 (9%)
Query: 42 VSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR-HGK 100
+ ++R+SG + +++ K+PKPRYA D V LD+G+ LWFP +
Sbjct: 1 MGILRISGLKARDVAQAVLG----KLPKPRYADYLPFND-VDGTPLDQGIALWFPGPNSF 55
Query: 101 CGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 56 TGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 100
>gi|288819136|ref|YP_003433484.1| tRNA modification GTPase [Hydrogenobacter thermophilus TK-6]
gi|384129883|ref|YP_005512496.1| tRNA modification GTPase TrmE [Hydrogenobacter thermophilus TK-6]
gi|288788536|dbj|BAI70283.1| tRNA modification GTPase [Hydrogenobacter thermophilus TK-6]
gi|308752720|gb|ADO46203.1| tRNA modification GTPase TrmE [Hydrogenobacter thermophilus TK-6]
Length = 450
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 120/342 (35%), Positives = 180/342 (52%), Gaps = 73/342 (21%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVS-KPRYASLRNIVDPVSEVVLDEGLCLWF 156
+G+ + +IR+SG L L+ + Y K KPRYA ++D +V LDEG+ +++
Sbjct: 15 YGESAIGMIRISG---LGVLEKVKKYVRTKGEIKPRYAHFFALLDEDGQV-LDEGVLIYY 70
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P S+TGED E +HG+ ++ L K G+R AEPGEF+KRAF N KLD+TQ E
Sbjct: 71 KSPASYTGEDMIEMCLHGNPLILKRALELFLK-EGIRLAEPGEFTKRAFLNGKLDMTQAE 129
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ DLI A+T+L R+ A+ Q++G L + +
Sbjct: 130 AVADLINAKTDLARKVAIRQLQGELSKY-------------------------------V 158
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
N++R +++QL LA VEA I+FSE +I
Sbjct: 159 NSLREKLIQL---------------------------LAYVEADIEFSEQ-----DIPTI 186
Query: 337 VRSQVVQLHGSIEKHIEL---SNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIV 393
R +++Q+ ++ IE + K G +R GI IVG+PNVGKSSL N L ++ +IV
Sbjct: 187 SREEILQVLKEVQNSIETLMSTVKAGELLRKGINLAIVGKPNVGKSSLFNALLGRERAIV 246
Query: 394 TSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
T +PGTTRD + + L + G P+ L+DTAG+R T D++E+ G
Sbjct: 247 TEVPGTTRDFLSEELHMEGVPINLIDTAGIR-ETEDVVESIG 287
>gi|395791675|ref|ZP_10471131.1| tRNA modification GTPase mnmE [Bartonella alsatica IBS 382]
gi|395407978|gb|EJF74598.1| tRNA modification GTPase mnmE [Bartonella alsatica IBS 382]
Length = 434
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 118/330 (35%), Positives = 160/330 (48%), Gaps = 66/330 (20%)
Query: 102 GVSVIRVSGPDTLNALKSM-ACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+VIR+SGP +N + ++ C P KPR+ N+ LD L ++FP P+
Sbjct: 15 GVAVIRLSGPHVINVVNTLCGCLP-----KPRFMHYGNLT-ARDGSFLDSALTVFFPAPH 68
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDC EF +HG AV+N L L+ G R AE GEFS+RAF KLDL Q E L D
Sbjct: 69 SFTGEDCAEFHLHGGKAVVNRFLDELSTFSGCRIAEAGEFSRRAFMKGKLDLVQAEGLAD 128
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI+AETE QR+ A+ G L LY +WR ++++ A +EA +DF ++ I D+I + V
Sbjct: 129 LIEAETESQRRLAIMGASGRLTTLYRDWRNKLMKARAFIEAELDFFDEADIPDSISDKVW 188
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
V L S+ HI + + +R G+K VI A N+ +S
Sbjct: 189 KDVENLCISLRNHIAEGERASI-LRDGLKIVIAGAP------------------NSGKSS 229
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
+V N L K ++IVT GTT
Sbjct: 230 IV----------------------------------------NRLAGKPVAIVTEEEGTT 249
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
RD +E +GG PV L DTAG R T + I
Sbjct: 250 RDALEVRFVLGGLPVFLTDTAGFRETENKI 279
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSM-ACYPDQKVPKPRYASLRNIVDPVSKVV 86
+TIFA+SSG GV+VIR+SGP +N + ++ C +PKPR+ N+
Sbjct: 2 DTIFAVSSGLLPSGVAVIRLSGPHVINVVNTLCGC-----LPKPRFMHYGNLT-ARDGSF 55
Query: 87 LDEGLCLWFP 96
LD L ++FP
Sbjct: 56 LDSALTVFFP 65
>gi|312136220|ref|YP_004003558.1| tRNA modification gtpase trme [Caldicellulosiruptor owensensis OL]
gi|311776271|gb|ADQ05758.1| tRNA modification GTPase TrmE [Caldicellulosiruptor owensensis OL]
Length = 455
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 131/343 (38%), Positives = 178/343 (51%), Gaps = 73/343 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMAC---YPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLW 155
G G+ ++R+SG D + + Y RYA+L ++ D + +DE + +
Sbjct: 14 GTGGIGIVRISGKDAYDVAGKLVKSRKYKSIHDIPVRYAALVDVYD--GDEFVDEAILIK 71
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
F P+S+TGED E Q HG I V+ IL A K G R A PGEF+KRAF N ++DL+Q
Sbjct: 72 FRSPHSYTGEDIVEIQSHGGIVVLKRILEAAIK-NGARHAMPGEFTKRAFLNGRIDLSQA 130
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
EA+ D+I ++T L +Q A KQL Q I E I +
Sbjct: 131 EAVIDIINSKTRLLQQNAA-------KQLKGMLSQRIEE----------------ISQLL 167
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSE---DEIIEDN 332
LN V A++EA IDFSE DE+ D
Sbjct: 168 LNLV-----------------------------------ATIEASIDFSEHEVDEVSHDE 192
Query: 333 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
IL+T+ + + IEK I+ S + G I+SGI +VIVG PNVGKSSL+N L +++ +I
Sbjct: 193 ILSTIDGALAK----IEKLIK-SYETGKAIKSGIYTVIVGRPNVGKSSLLNRLLKEEKAI 247
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
VT IPGTTRDVIE+ LDI G P+IL DTAG+R T D++E G
Sbjct: 248 VTDIPGTTRDVIEEVLDIEGIPIILADTAGVR-RTEDVVEKIG 289
>gi|167627608|ref|YP_001678108.1| tRNA modification GTPase TrmE [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|189036203|sp|B0TYD1.1|MNME_FRAP2 RecName: Full=tRNA modification GTPase MnmE
gi|167597609|gb|ABZ87607.1| GTPase of unknown function [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 450
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 117/337 (34%), Positives = 179/337 (53%), Gaps = 68/337 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G G+ ++R+SG D L S+A +K KPRYA+ NI + ++E++ D G+ ++F
Sbjct: 15 GNGGIGIVRISGSDAL----SIAEKLTKKRLKPRYATFCNIYN-INEII-DHGIVIFFNS 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNS+TGED E Q HG+ ++N I+ A + G R A GEF++RAF NNKLDLTQ EA+
Sbjct: 69 PNSYTGEDVVEIQAHGNPFILNLIIKATLEY-GARMANAGEFTERAFLNNKLDLTQAEAV 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I A +E + A ++G+ + + + ++ VEA IDF E+EI
Sbjct: 128 ADIINASSETAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPEEEI-------- 179
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+F ED+ I N L +
Sbjct: 180 -------------------------------------------NFLEDQKIH-NSLQDIY 195
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ + S ++ G + GI ++VG+PN GKSSL+N L K+ +IVTSI G
Sbjct: 196 KTILDVKNSCKQ--------GAILVEGITLILVGKPNAGKSSLLNALAGKESAIVTSIAG 247
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD++++H+ I G P+ ++DTAGLR ++ DIIE+EG
Sbjct: 248 TTRDIVKEHIQINGVPMHIIDTAGLR-SSDDIIESEG 283
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
K+TI A+++ G G+ ++R+SG D L S+A +K KPRYA+ NI + +
Sbjct: 4 KDTIVAVATPQGNGGIGIVRISGSDAL----SIAEKLTKKRLKPRYATFCNIYNI--NEI 57
Query: 87 LDEGLCLWF 95
+D G+ ++F
Sbjct: 58 IDHGIVIFF 66
>gi|317035274|ref|XP_001396578.2| cytokinesis protein sepA [Aspergillus niger CBS 513.88]
Length = 2210
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 114/343 (33%), Positives = 181/343 (52%), Gaps = 73/343 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSE----VVLDEG-LC 153
G+ ++V+R SGP + KS+ C P+ + +PR A +R + DP + VLD G L
Sbjct: 1663 GRAAIAVVRASGPACVQIYKSL-C-PEAPLPRPRLAVVRTLYDPSQKPSPNTVLDAGALV 1720
Query: 154 LWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG----LRPAEPGEFSKRAFFNNK 209
L+FP P + TGED E +HG A++ ++L ++++ +R AEPGEF++RAF NN+
Sbjct: 1721 LYFPGPKTVTGEDVLELHLHGGPAIVKSVLSSISRTNNPDYTVRYAEPGEFTRRAFMNNR 1780
Query: 210 LDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDE 269
LDL Q EALGD + A+TE QR+ A+ L + Y +W
Sbjct: 1781 LDLPQIEALGDTLSADTEQQRRLAVRGASDALSKRYEQW--------------------- 1819
Query: 270 IIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEII 329
R Q++ G +E A IDFSED+
Sbjct: 1820 ----------RHQLLYARGELE---------------------------ALIDFSEDQHF 1842
Query: 330 ED---NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLC 386
++ +++++V +QV L I HI+ ++K G +R+GIK ++G PN GKSSL+N +
Sbjct: 1843 DESTEDLVSSVAAQVRALRAQIALHIQNASK-GELLRNGIKVALLGAPNAGKSSLLNRIV 1901
Query: 387 QKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
++ +IV++ GTTRD+++ +DIGG+ L D AG+R+ +D
Sbjct: 1902 GREAAIVSTEEGTTRDIVDVGVDIGGWYCKLGDMAGIRSEPND 1944
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 150/300 (50%), Gaps = 76/300 (25%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSK--- 84
+TI+ALS+ G+ ++V+R SGP + KS+ C P+ +P+PR A +R + DP K
Sbjct: 1653 STIYALSTASGRAAIAVVRASGPACVQIYKSL-C-PEAPLPRPRLAVVRTLYDPSQKPSP 1710
Query: 85 -VVLDEG-LCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDP 142
VLD G L L+FP GP T+
Sbjct: 1711 NTVLDAGALVLYFP-------------GPKTV---------------------------- 1729
Query: 143 VSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG----LRPAEPG 198
TGED E +HG A++ ++L ++++ +R AEPG
Sbjct: 1730 --------------------TGEDVLELHLHGGPAIVKSVLSSISRTNNPDYTVRYAEPG 1769
Query: 199 EFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLAS 258
EF++RAF NN+LDL Q EALGD + A+TE QR+ A+ L + Y +WR +L +
Sbjct: 1770 EFTRRAFMNNRLDLPQIEALGDTLSADTEQQRRLAVRGASDALSKRYEQWRHQLLYARGE 1829
Query: 259 VEAYIDFSEDEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA 315
+EA IDFSED+ + ++++++V +QV L I HI+ ++K G +R+GIK + A
Sbjct: 1830 LEALIDFSEDQHFDESTEDLVSSVAAQVRALRAQIALHIQNASK-GELLRNGIKVALLGA 1888
>gi|453087317|gb|EMF15358.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 588
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 115/339 (33%), Positives = 172/339 (50%), Gaps = 74/339 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDP-----VSEVVLDEGLC 153
G+ ++VIRVSGP L+ ++ P +K +PR A++R++ +P + V+ L
Sbjct: 70 GRAAIAVIRVSGPACLHIYAALC--PGKKAPRPRVATVRSLYEPGKTPSPANVLDSSALI 127
Query: 154 LWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG-----LRPAEPGEFSKRAFFNN 208
L F P S TGED E VHG A++ A+L A+++ +R AEPGEF++RAF N
Sbjct: 128 LHFEGPGSATGEDILELHVHGGPAIVKAVLAAISRCGTAESGVIRYAEPGEFTRRAFMNG 187
Query: 209 KLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSED 268
+L LTQ EALGD + A+TE QR+ ++ G L Y WRQ +L + +EA IDFSED
Sbjct: 188 RLGLTQVEALGDTLAADTEQQRRLSVRGTTGKLSVQYETWRQRLLYARGELEALIDFSED 247
Query: 269 EIIEDN---ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSE 325
+ +++ ++ +V QV L S++ H+
Sbjct: 248 QHFDESPAELMLSVAEQVKVLQASLQVHVR------------------------------ 277
Query: 326 DEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFL 385
N VR +++ R GI ++G PN GKSSL+N +
Sbjct: 278 ---------NAVRGELL--------------------RHGINVSLLGAPNTGKSSLLNRI 308
Query: 386 CQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424
++ +IV++ GTTRDV+E LD+GGY DTAGLR
Sbjct: 309 VGREAAIVSNEAGTTRDVVEIGLDLGGYFCRFGDTAGLR 347
>gi|190171182|gb|ACE63661.1| ThdF [Enterobacter amnigenus]
Length = 439
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ +L+ +S ++E+L + Y
Sbjct: 122 ADLIDASSEQAARSALN----SLQGAFSARVNHLVEALTHLRIY---------------- 161
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+E I+ ++ IDF D IE LNTV
Sbjct: 162 -----------VEAAIDFPDE--------------------EIDFLSDGKIEAQ-LNTVM 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + + + G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 190 ADL--------DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 273
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++R+SG L A + +A K+PKPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P +++KP S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLN 110
>gi|225554700|gb|EEH02995.1| tRNA modification GTPase GTPBP3 [Ajellomyces capsulatus G186AR]
Length = 615
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 118/357 (33%), Positives = 179/357 (50%), Gaps = 82/357 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVS----EVVLDEGLCL 154
G+ ++++RVSGP + ++ P + + PR A+LR + DP +LD + L
Sbjct: 72 GRAAIAIVRVSGPACVQIYDALC--PKRPLPNPRVAALRTLYDPSVPPSVNTILDRAVVL 129
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTK-----------LPGLRPAEPGEFSKR 203
FP PN+ TGED E +HG AV+ A+L A+ + +P +R AEPGEF++R
Sbjct: 130 HFPAPNTVTGEDVLELHIHGGPAVVKAVLNAIPRCAGAFSNEKIAMPSIRYAEPGEFTRR 189
Query: 204 AFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYI 263
AF N++L L Q EALG+ + AETE QR+ A+ G+L Y W
Sbjct: 190 AFLNDRLSLPQIEALGNTLSAETEHQRRLAVRGTSGSLAFRYERW--------------- 234
Query: 264 DFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDF 323
R Q++ G +E A IDF
Sbjct: 235 ----------------RQQLLYARGEME---------------------------ALIDF 251
Query: 324 SEDEIIEDNI---LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSS 380
SED+ +++I ++++ +V L I HIE ++K G +RSGI+ ++G PN GKSS
Sbjct: 252 SEDQHFDESIEDFVSSITGEVRNLVRQINLHIENASK-GELLRSGIRIALLGAPNAGKSS 310
Query: 381 LMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNL 437
L+N + ++ +IV+S GTTRD+++ +DIGGY D AGLR SD I G++
Sbjct: 311 LLNRIVGREAAIVSSEEGTTRDIVDVGVDIGGYFCKFGDMAGLR---SDHIARSGSM 364
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 137/304 (45%), Gaps = 90/304 (29%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVD----PVS 83
+TI+ALS+ G+ ++++RVSGP + ++ P + +P PR A+LR + D P
Sbjct: 62 STIYALSTAPGRAAIAIVRVSGPACVQIYDALC--PKRPLPNPRVAALRTLYDPSVPPSV 119
Query: 84 KVVLDEGLCLWFPR------------HGKCGVSVIRVSGPDTLNALKSMA-CYPDQKVSK 130
+LD + L FP H G +V++ LNA+ A + ++K++
Sbjct: 120 NTILDRAVVLHFPAPNTVTGEDVLELHIHGGPAVVKA----VLNAIPRCAGAFSNEKIAM 175
Query: 131 P--RYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTK 188
P RYA +P FT
Sbjct: 176 PSIRYA-----------------------EPGEFT------------------------- 187
Query: 189 LPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEW 248
+RAF N++L L Q EALG+ + AETE QR+ A+ G+L Y W
Sbjct: 188 -------------RRAFLNDRLSLPQIEALGNTLSAETEHQRRLAVRGTSGSLAFRYERW 234
Query: 249 RQLILESLASVEAYIDFSEDEIIEDNI---LNTVRSQVVQLHGSIEKHIELSNKCGVRIR 305
RQ +L + +EA IDFSED+ +++I ++++ +V L I HIE ++K G +R
Sbjct: 235 RQQLLYARGEMEALIDFSEDQHFDESIEDFVSSITGEVRNLVRQINLHIENASK-GELLR 293
Query: 306 SGIK 309
SGI+
Sbjct: 294 SGIR 297
>gi|347761109|ref|YP_004868670.1| tRNA modification GTPase ThdF [Gluconacetobacter xylinus NBRC 3288]
gi|347580079|dbj|BAK84300.1| tRNA modification GTPase ThdF [Gluconacetobacter xylinus NBRC 3288]
Length = 435
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 120/341 (35%), Positives = 173/341 (50%), Gaps = 74/341 (21%)
Query: 100 KCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIV--DPVSEVVLDEGLCLWFP 157
+ ++V+R+SG T + ++S+ C ++ PR ASLR + D V+LD L LWFP
Sbjct: 20 RAAIAVMRLSGQGTGSIVESL-C---GRLPAPRRASLRGLWRRDGAEPVLLDRALVLWFP 75
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P+S+TGED E +H AVINA+ AL L G RPAEPGEFS+RAF + ++DL Q E
Sbjct: 76 GPDSYTGEDSAELHLHAGPAVINAVADALVAL-GARPAEPGEFSRRAFMHGRMDLMQAEG 134
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEI---IEDN 274
+ DLI+AETE QRQ+AL Q+ G QLY W + LA EA IDF ++E+ +E
Sbjct: 135 IADLIEAETEAQRQQALAQVDGAQSQLYQRWADRLRTLLAHQEALIDFPDEELPPEVEQQ 194
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
+ N ++ +LH +++ ++ + + G R+R G+ I E + + ++L
Sbjct: 195 LCNGLQ----ELHATMQAYL-VEGEGGERLRRGLVFAIV----------GEPNVGKSSLL 239
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
N L + +IV+
Sbjct: 240 NA------------------------------------------------LAGRDAAIVS 251
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
S GTTRD IE + +G PV L+DTAGLR T D IE EG
Sbjct: 252 SRAGTTRDAIEVRMVMGDVPVTLVDTAGLR-ETEDEIEVEG 291
>gi|451942742|ref|YP_007463379.1| tRNA modification GTPase [Bartonella vinsonii subsp. berkhoffii
str. Winnie]
gi|451902129|gb|AGF76591.1| tRNA modification GTPase [Bartonella vinsonii subsp. berkhoffii
str. Winnie]
Length = 435
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 162/330 (49%), Gaps = 66/330 (20%)
Query: 102 GVSVIRVSGPDTLNALKSM-ACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+VIR+SGP +N +K++ C P K R+ N+ LD L ++FP P+
Sbjct: 15 GVAVIRLSGPHVVNVVKTLCGCLP-----KARFMHYGNLT-ACDGSFLDSALTVFFPAPH 68
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDC EF +HG AV+N L L+ G R AE GEFS+RAF KLDL Q E L D
Sbjct: 69 SFTGEDCAEFHLHGGKAVVNRFLDELSTFSGCRIAEAGEFSRRAFMEGKLDLVQAEGLAD 128
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI+AETE QR+ A+ G L LY +WR ++++ A +EA +DF ++ I +++ + V
Sbjct: 129 LIEAETESQRRLAIMGTSGRLTTLYRDWRHRLMKARAFIEAELDFVDEADIPNSVSDKVW 188
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
+ L S+++HI+ + + +R G+K VI A
Sbjct: 189 KDMQDLCSSLQEHIDEGERASI-LRDGLKIVIAGAPNSG--------------------- 226
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
+S I + + G P +SIVT GTT
Sbjct: 227 ----------------------KSSIMNRLAGRP---------------VSIVTEEAGTT 249
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
RD +E L +GG PV L DTAG R T + I
Sbjct: 250 RDALEMRLVLGGLPVFLTDTAGFRETENKI 279
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSM-ACYPDQKVPKPRYASLRNIVDPVSKVV 86
+TIFA+SSG GV+VIR+SGP +N +K++ C +PK R+ N+
Sbjct: 2 DTIFAVSSGLLPSGVAVIRLSGPHVVNVVKTLCGC-----LPKARFMHYGNLT-ACDGSF 55
Query: 87 LDEGLCLWFP 96
LD L ++FP
Sbjct: 56 LDSALTVFFP 65
>gi|226326927|ref|ZP_03802445.1| hypothetical protein PROPEN_00787 [Proteus penneri ATCC 35198]
gi|225204764|gb|EEG87118.1| tRNA modification GTPase TrmE [Proteus penneri ATCC 35198]
Length = 454
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 121/341 (35%), Positives = 167/341 (48%), Gaps = 83/341 (24%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYAS---LRNIVDPVSEVVLDEGLCLW 155
G+ GV ++RVSGP AL + K+ KPRYA RN D S VLD+G+ L+
Sbjct: 15 GRGGVGILRVSGPKA--ALVAQTVL--GKLPKPRYADYLPFRN--DDNS--VLDQGIALF 66
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
FP PNSFTGED E Q HG +++ +L + ++PG+R A PGEFS+RAF N+KLDL Q
Sbjct: 67 FPNPNSFTGEDVLELQGHGGPVILDLLLKRILQIPGVRIANPGEFSERAFLNDKLDLAQA 126
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
EA+ DLI A +E
Sbjct: 127 EAIADLIDASSE------------------------------------------------ 138
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNI-- 333
RS + L G+ H+ + +R +++ I E IDF D IIE +
Sbjct: 139 -QAARSAINSLQGAFSSHVNEMVESLTHLRIYVEAAIDFPDEE--IDFLSDGIIEGKLNA 195
Query: 334 ----LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389
L+ VR+Q Q G +R G+K VI G PN GKSSL+N L ++
Sbjct: 196 VIAELDDVRAQARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGRE 240
Query: 390 ISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
+IVT I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 241 AAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYAS---LRNIVDPVSK 84
+TI A ++ G+ GV ++RVSGP AL + K+PKPRYA RN
Sbjct: 5 DTIVAQATPPGRGGVGILRVSGPKA--ALVAQTVL--GKLPKPRYADYLPFRN----DDN 56
Query: 85 VVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNI 139
VLD+G+ L+FP + G V+ + GP L+ LK + P +++ P S R
Sbjct: 57 SVLDQGIALFFPNPNSFTGEDVLELQGHGGPVILDLLLKRILQIPGVRIANPGEFSERAF 116
Query: 140 VD 141
++
Sbjct: 117 LN 118
>gi|347530290|ref|YP_004837038.1| tRNA modification GTPase MnmE [Sphingobium sp. SYK-6]
gi|345138972|dbj|BAK68581.1| tRNA modification GTPase MnmE [Sphingobium sp. SYK-6]
Length = 432
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 161/339 (47%), Gaps = 73/339 (21%)
Query: 103 VSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSF 162
++VIR+SGPD L+A + + + + PR A LR VDP S +LDEGL + FP +
Sbjct: 19 IAVIRLSGPDALDAARRLTT---RDLPPPRQAGLRRFVDPTSGELLDEGLLICFPGDRTE 75
Query: 163 TGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLI 222
TGE E HGS AV+ I AL LPGLR A+ GEF++RAF N + DL E LGDL+
Sbjct: 76 TGEPMAELHCHGSWAVVRGIEAALAALPGLRLAQAGEFTRRAFLNGRTDLAAIEGLGDLL 135
Query: 223 QAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQ 282
AET LQR R+
Sbjct: 136 AAETALQR-------------------------------------------------RAA 146
Query: 283 VVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFS-EDEI-----IEDNILNT 336
+ + G + I + R+ A VEA +DF+ ED++ I D +
Sbjct: 147 MAMMAGQFSRRISTWTQALTRL---------AAQVEAQLDFADEDDVSRAGAISDALAED 197
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
R+ + EL R+R GI+ I G PN GKS+L N+L ++ +IV+
Sbjct: 198 CRTIARDMES------ELVRPGAERMREGIRVAIGGPPNAGKSTLFNYLVGREAAIVSPH 251
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE + + G P+IL DTAGLR +SD IE G
Sbjct: 252 AGTTRDVIEATISLNGIPIILADTAGLREDSSDEIERIG 290
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
+A +TIFALSSG ++VIR+SGPD L+A + + + +P PR A LR VDP S
Sbjct: 1 MASPDTIFALSSGRPPAAIAVIRLSGPDALDAARRLTT---RDLPPPRQAGLRRFVDPTS 57
Query: 84 KVVLDEGLCLWFP 96
+LDEGL + FP
Sbjct: 58 GELLDEGLLICFP 70
>gi|90194124|gb|ABD92623.1| ThdF [Actinobacillus porcinus]
Length = 436
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 173/332 (52%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSGP + K++ K KPR A+ D + LD+G+ L+F
Sbjct: 4 GRGGVGILRVSGPLAEDVAKAVVG----KTLKPRLANYLPFKD-IDGTTLDQGIALFFKA 58
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L + ++ G+R A+PGEFS++AF N+KLDL Q EA+
Sbjct: 59 PNSFTGEDVLELQGHGGQIVLDLLLKRILQVKGVRLAKPGEFSEQAFLNDKLDLAQAEAI 118
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G ++ + ++ VEA IDF ++EI D + +
Sbjct: 119 ADLIDASSEQAARSALKSLQGEFSNKVNQLVEQVIYLRTYVEAAIDFPDEEI--DFLAD- 175
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE H+ +EII L+ VR
Sbjct: 176 ---------GKIEGHL-------------------------------NEIIAQ--LDNVR 193
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 194 REARQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 238
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T ++
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLRDATDEV 270
>gi|425063860|ref|ZP_18466985.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pasteurella
multocida subsp. gallicida X73]
gi|404382414|gb|EJZ78875.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pasteurella
multocida subsp. gallicida X73]
Length = 465
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 121/347 (34%), Positives = 175/347 (50%), Gaps = 65/347 (18%)
Query: 84 KVVLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPV 143
+V + E + G+ G+ ++RVSGP + ++ K KPR A D
Sbjct: 11 RVFMKETIVAQATAPGRGGIGILRVSGPKAVEVAHAVLG----KCPKPRMADYLPFKDSD 66
Query: 144 SEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKR 203
V LD+G+ L+F P+SFTGED E Q HG V++ +L + +L GLR A PGEFS++
Sbjct: 67 GNV-LDQGIALYFKAPHSFTGEDVLELQGHGGQVVLDLLLKRILQLEGLRLARPGEFSEQ 125
Query: 204 AFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYI 263
AF N+KLDL Q EA+ DLI A +E + AL ++G ++ ++ VEA I
Sbjct: 126 AFLNDKLDLAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAI 185
Query: 264 DFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDF 323
DF ++EI D + + G IE H+
Sbjct: 186 DFPDEEI--DFLAD----------GKIEAHL----------------------------- 204
Query: 324 SEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMN 383
++II L+ VRS+ Q GSI +R G+K VI G PN GKSSL+N
Sbjct: 205 --NDIITQ--LDHVRSEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLN 245
Query: 384 FLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
L ++ +IVT I GTTRDV+ +H+ I G P+ ++DTAGLR T ++
Sbjct: 246 ALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREATDEV 292
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 11 EKAVIFFSRRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKP 70
+ AVIF + +K TI A ++ G+ G+ ++RVSGP + ++ K PKP
Sbjct: 4 QSAVIF-----KRVFMKETIVAQATAPGRGGIGILRVSGPKAVEVAHAVLG----KCPKP 54
Query: 71 RYASLRNIVDPVSKVVLDEGLCLWFPR-HGKCGVSVIRVSG 110
R A D VLD+G+ L+F H G V+ + G
Sbjct: 55 RMADYLPFKDSDGN-VLDQGIALYFKAPHSFTGEDVLELQG 94
>gi|419802400|ref|ZP_14327587.1| tRNA modification GTPase TrmE [Haemophilus parainfluenzae HK262]
gi|385190262|gb|EIF37710.1| tRNA modification GTPase TrmE [Haemophilus parainfluenzae HK262]
Length = 452
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++RVSGP + +++ K KPR A D VLD+G+ L+F
Sbjct: 13 GRGGIGILRVSGPKAVEVAQAVLG----KCPKPRMADYLPFKD-ADGTVLDQGIALYFKS 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L + +L G+R A PGEFS++AF N+KLDL Q EA+
Sbjct: 68 PNSFTGEDVLELQGHGGQVVLDLLLKRILQLDGVRLARPGEFSEQAFLNDKLDLAQAEAI 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G ++ ++ VEA IDF ++EI D + +
Sbjct: 128 ADLIHATSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEASIDFPDEEI--DFLAD- 184
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + EII N L+ VR
Sbjct: 185 ---------GKIEAKLR-------------------------------EII--NQLDLVR 202
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S+ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 203 SEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 247
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T ++
Sbjct: 248 TTRDVLREHIHIDGMPLHIIDTAGLREATDEV 279
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP + +++ K PKPR A D
Sbjct: 1 MKETIVAQATAPGRGGIGILRVSGPKAVEVAQAVLG----KCPKPRMADYLPFKD-ADGT 55
Query: 86 VLDEGLCLWF 95
VLD+G+ L+F
Sbjct: 56 VLDQGIALYF 65
>gi|350636062|gb|EHA24422.1| hypothetical protein ASPNIDRAFT_53384 [Aspergillus niger ATCC 1015]
Length = 584
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 114/343 (33%), Positives = 181/343 (52%), Gaps = 73/343 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSE----VVLDEG-LC 153
G+ ++V+R SGP + KS+ C P+ + +PR A +R + DP + VLD G L
Sbjct: 42 GRAAIAVVRASGPACVQIYKSL-C-PEAPLPRPRLAVVRTLYDPSQKPSPNTVLDAGALV 99
Query: 154 LWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG----LRPAEPGEFSKRAFFNNK 209
L+FP P + TGED E +HG A++ ++L ++++ +R AEPGEF++RAF NN+
Sbjct: 100 LYFPGPKTVTGEDVLELHLHGGPAIVKSVLSSISRTNNPDYTVRYAEPGEFTRRAFMNNR 159
Query: 210 LDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDE 269
LDL Q EALGD + A+TE QR+ A+ L + Y +W
Sbjct: 160 LDLPQIEALGDTLSADTEQQRRLAVRGASDALSKRYEQW--------------------- 198
Query: 270 IIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEII 329
R Q++ G +E A IDFSED+
Sbjct: 199 ----------RHQLLYARGELE---------------------------ALIDFSEDQHF 221
Query: 330 ED---NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLC 386
++ +++++V +QV L I HI+ ++K G +R+GIK ++G PN GKSSL+N +
Sbjct: 222 DESTEDLVSSVAAQVRALRAQIALHIQNASK-GELLRNGIKVALLGAPNAGKSSLLNRIV 280
Query: 387 QKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
++ +IV++ GTTRD+++ +DIGG+ L D AG+R+ +D
Sbjct: 281 GREAAIVSTEEGTTRDIVDVGVDIGGWYCKLGDMAGIRSEPND 323
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 147/294 (50%), Gaps = 76/294 (25%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSK--- 84
+TI+ALS+ G+ ++V+R SGP + KS+ C P+ +P+PR A +R + DP K
Sbjct: 32 STIYALSTASGRAAIAVVRASGPACVQIYKSL-C-PEAPLPRPRLAVVRTLYDPSQKPSP 89
Query: 85 -VVLDEG-LCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDP 142
VLD G L L+FP GP T+
Sbjct: 90 NTVLDAGALVLYFP-------------GPKTVT--------------------------- 109
Query: 143 VSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG----LRPAEPG 198
GED E +HG A++ ++L ++++ +R AEPG
Sbjct: 110 ---------------------GEDVLELHLHGGPAIVKSVLSSISRTNNPDYTVRYAEPG 148
Query: 199 EFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLAS 258
EF++RAF NN+LDL Q EALGD + A+TE QR+ A+ L + Y +WR +L +
Sbjct: 149 EFTRRAFMNNRLDLPQIEALGDTLSADTEQQRRLAVRGASDALSKRYEQWRHQLLYARGE 208
Query: 259 VEAYIDFSEDEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK 309
+EA IDFSED+ + ++++++V +QV L I HI+ ++K G +R+GIK
Sbjct: 209 LEALIDFSEDQHFDESTEDLVSSVAAQVRALRAQIALHIQNASK-GELLRNGIK 261
>gi|307211526|gb|EFN87614.1| tRNA modification GTPase mnmE [Harpegnathos saltator]
Length = 434
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 116/329 (35%), Positives = 162/329 (49%), Gaps = 64/329 (19%)
Query: 102 GVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNS 161
GV+VIR+SG + L+ +A + V +PR L EV LD GL ++FP P S
Sbjct: 15 GVAVIRLSGAAVKDVLQRVAGF----VPEPRMMVLATFRAESGEV-LDRGLVVYFPAPKS 69
Query: 162 FTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDL 221
FTGEDC EF +HG AV+ L L+ P R AE GEFS+RAF K DLT+ E L DL
Sbjct: 70 FTGEDCAEFHLHGGKAVVTRFLDELSTFPDCRVAEAGEFSRRAFAEGKFDLTEAEGLADL 129
Query: 222 IQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRS 281
I AETE QR+ A+ G L LY WR ++++ A +EA +DF+++ + ++ + +
Sbjct: 130 IHAETESQRRLAMMGASGALADLYRNWRSTLVQARAMIEAELDFADEGDVPGSVADRIWD 189
Query: 282 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQV 341
V QLH ++ HIE + + V +R G+K VI A N +S V
Sbjct: 190 NVSQLHKAVLTHIESAARADV-MRDGVKIVIAGAP------------------NAGKSSV 230
Query: 342 VQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTR 401
+ N+ R ++IVT GTTR
Sbjct: 231 I-------------NRLAAR---------------------------DVAIVTEEAGTTR 250
Query: 402 DVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
D +E L +GG PV++ DTAGLR T + I
Sbjct: 251 DALEIRLVLGGLPVLVTDTAGLRQTENHI 279
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 24/138 (17%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TIFALSSG GV+VIR+SG + L+ +A + VP+PR L S VL
Sbjct: 2 KTIFALSSGLLPSGVAVIRLSGAAVKDVLQRVAGF----VPEPRMMVLATF-RAESGEVL 56
Query: 88 DEGLCLWFPR------------HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYAS 135
D GL ++FP H G +V+ L ++ +PD +V++ S
Sbjct: 57 DRGLVVYFPAPKSFTGEDCAEFHLHGGKAVV-------TRFLDELSTFPDCRVAEAGEFS 109
Query: 136 LRNIVDPVSEVVLDEGLC 153
R + ++ EGL
Sbjct: 110 RRAFAEGKFDLTEAEGLA 127
>gi|398830715|ref|ZP_10588896.1| tRNA modification GTPase TrmE [Phyllobacterium sp. YR531]
gi|398213295|gb|EJM99888.1| tRNA modification GTPase TrmE [Phyllobacterium sp. YR531]
Length = 439
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 116/326 (35%), Positives = 167/326 (51%), Gaps = 65/326 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
G++V+R+SGP T ++++ PR A LR+ + ++ D+GL L+FP P+
Sbjct: 19 SGIAVMRISGPQTRFVIETICGNL-----LPRKAELRSFKNRNGGLI-DKGLALFFPGPS 72
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDC EF +HG AV+++++ AL PG R AE GEFS+RA+ N K DLT E L D
Sbjct: 73 SFTGEDCAEFHLHGGKAVVDSMITALYDFPGCRMAEAGEFSRRAYANGKFDLTAAEGLAD 132
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI AET+ QR+ AL + S A + Y + D I
Sbjct: 133 LIAAETDSQRRLALQ-----------------ISSGAQAQLYASWRTDLI---------- 165
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
R R A +EA +DF+++ + ++ + V Q
Sbjct: 166 ----------------------RAR---------ALIEAELDFADESDVPGSVSDQVWKQ 194
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
+ L I +H+ K G +R G K VI+G PN GKSSL+N L ++IV+ GTT
Sbjct: 195 MGSLAEQINRHVR-DGKRGFIVRDGYKVVIIGAPNAGKSSLLNTLAGTDVAIVSDEAGTT 253
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTT 426
RD+IE LD+GG V++ DTAG+R T
Sbjct: 254 RDLIEIKLDLGGINVLVTDTAGIRET 279
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 122/289 (42%), Gaps = 68/289 (23%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
+ TIFALSSG G++V+R+SGP T ++++ PR A LR+ + ++
Sbjct: 6 EETIFALSSGRLPSGIAVMRISGPQTRFVIETICGN-----LLPRKAELRSFKNRNGGLI 60
Query: 87 LDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEV 146
D+GL L+FP GP + + + ++ + +VD +
Sbjct: 61 -DKGLALFFP-------------GP---------SSFTGEDCAEFHLHGGKAVVDSMITA 97
Query: 147 VLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFF 206
+ D FP C G + R G+F
Sbjct: 98 LYD------FPG---------CRMAEAGEFS--------------RRAYANGKF------ 122
Query: 207 NNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFS 266
DLT E L DLI AET+ QR+ AL G QLY+ WR ++ + A +EA +DF+
Sbjct: 123 ----DLTAAEGLADLIAAETDSQRRLALQISSGAQAQLYASWRTDLIRARALIEAELDFA 178
Query: 267 EDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA 315
++ + ++ + V Q+ L I +H+ K G +R G K VI A
Sbjct: 179 DESDVPGSVSDQVWKQMGSLAEQINRHVR-DGKRGFIVRDGYKVVIIGA 226
>gi|15603031|ref|NP_246103.1| tRNA modification GTPase TrmE [Pasteurella multocida subsp.
multocida str. Pm70]
gi|12721514|gb|AAK03250.1| ThdF [Pasteurella multocida subsp. multocida str. Pm70]
Length = 465
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 121/347 (34%), Positives = 175/347 (50%), Gaps = 65/347 (18%)
Query: 84 KVVLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPV 143
+V + E + G+ G+ ++RVSGP + ++ K KPR A D
Sbjct: 11 RVFMKETIVAQATAPGRGGIGILRVSGPKAVEVAHTVLG----KCPKPRMADYLPFKDSD 66
Query: 144 SEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKR 203
V LD+G+ L+F P+SFTGED E Q HG V++ +L + +L GLR A PGEFS++
Sbjct: 67 GNV-LDQGIALYFKAPHSFTGEDVLELQGHGGQVVLDLLLKRILQLEGLRLARPGEFSEQ 125
Query: 204 AFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYI 263
AF N+KLDL Q EA+ DLI A +E + AL ++G ++ ++ VEA I
Sbjct: 126 AFLNDKLDLAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAI 185
Query: 264 DFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDF 323
DF ++EI D + + G IE H+
Sbjct: 186 DFPDEEI--DFLAD----------GKIEAHL----------------------------- 204
Query: 324 SEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMN 383
++II L+ VRS+ Q GSI +R G+K VI G PN GKSSL+N
Sbjct: 205 --NDIITQ--LDHVRSEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLN 245
Query: 384 FLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
L ++ +IVT I GTTRDV+ +H+ I G P+ ++DTAGLR T ++
Sbjct: 246 ALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREATDEV 292
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 11 EKAVIFFSRRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKP 70
+ AVIF + +K TI A ++ G+ G+ ++RVSGP + ++ K PKP
Sbjct: 4 QSAVIF-----KRVFMKETIVAQATAPGRGGIGILRVSGPKAVEVAHTVLG----KCPKP 54
Query: 71 RYASLRNIVDPVSKVVLDEGLCLWFPR-HGKCGVSVIRVSG 110
R A D VLD+G+ L+F H G V+ + G
Sbjct: 55 RMADYLPFKDSDGN-VLDQGIALYFKAPHSFTGEDVLELQG 94
>gi|348686492|gb|EGZ26307.1| hypothetical protein PHYSODRAFT_479901 [Phytophthora sojae]
Length = 495
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 128/341 (37%), Positives = 175/341 (51%), Gaps = 65/341 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+VIR+SG + L+ ++ + +PR A+LR + P ++ LD+ L L FP
Sbjct: 50 GKAGVAVIRISGEQADSCLQQLS--KSTALPEPRVAALRKLYHPKTKEHLDDALVLRFPH 107
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E HGS+AV++ +L AL+ +P R AE GEF++RAF NNK+D
Sbjct: 108 PKSFTGEDIVELHTHGSVAVVSGVLEALSHVPHCRAAEAGEFTERAFDNNKID------- 160
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
L+Q E L L S A EA
Sbjct: 161 --LVQVE--------------GLADLLS----------AETEAQ---------------- 178
Query: 279 VRSQVV-QLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI-IEDNILNT 336
R Q + QL G + + E VR CLA EA IDF +DE + D
Sbjct: 179 -RGQALRQLSGDVGEIYEGWRNSLVR---------CLAYTEAMIDFGDDEDDVTDAAYEA 228
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+V L SI H+ + G +RSG++ I+G PN GKSSL+N L ++ +IV+SI
Sbjct: 229 AVDRVRVLADSIRGHLA-DGRRGEILRSGVQVAILGPPNAGKSSLLNVLARRPAAIVSSI 287
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNL 437
GTTRDV++ L+I GYPVI+ DTAG+R T D++E EG L
Sbjct: 288 AGTTRDVVQVPLNIAGYPVIVSDTAGIR-ETEDLVEKEGVL 327
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI+ALSS GK GV+VIR+SG + L+ ++ +P+PR A+LR + P +K L
Sbjct: 40 DTIYALSSAPGKAGVAVIRISGEQADSCLQQLS--KSTALPEPRVAALRKLYHPKTKEHL 97
Query: 88 DEGLCLWFP 96
D+ L L FP
Sbjct: 98 DDALVLRFP 106
>gi|253690652|ref|YP_003019842.1| tRNA modification GTPase TrmE [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|259495843|sp|C6DK97.1|MNME_PECCP RecName: Full=tRNA modification GTPase MnmE
gi|251757230|gb|ACT15306.1| tRNA modification GTPase TrmE [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 454
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 117/338 (34%), Positives = 166/338 (49%), Gaps = 77/338 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG A +A K+ KPR+A D + LD+G+ LWFP
Sbjct: 15 GRGGVGILRVSG----RAAAEVAQAVLGKLPKPRHADYLPFRD-ANGTTLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LP +R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPNVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G ++ + + VEA IDF ++EI
Sbjct: 130 ADLIDASSEQAARSALNSLQGVFSTRVNQLVEALTHLRIYVEAAIDFPDEEI-------- 181
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNI----- 333
DF D IE +
Sbjct: 182 -------------------------------------------DFLSDGKIESQLNGVMA 198
Query: 334 -LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
L+ VR++ Q GS+ +R G+K VI G PN GKSSL+N L ++ +I
Sbjct: 199 DLDAVRAEAHQ--GSL-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAI 243
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
VT I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 244 VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++RVSG A +A K+PKPR+A D + L
Sbjct: 5 DTIVAQATPPGRGGVGILRVSG----RAAAEVAQAVLGKLPKPRHADYLPFRD-ANGTTL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P+ ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPNVRIARPGEFSERAFLN 118
>gi|119947214|ref|YP_944894.1| tRNA modification GTPase TrmE [Psychromonas ingrahamii 37]
gi|166234813|sp|A1T0N0.1|MNME_PSYIN RecName: Full=tRNA modification GTPase MnmE
gi|119865818|gb|ABM05295.1| tRNA modification GTPase trmE [Psychromonas ingrahamii 37]
Length = 455
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 120/335 (35%), Positives = 174/335 (51%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IR+SGPD ++++A KV K R+A + D +EV LD+G+ L+F
Sbjct: 16 GRGGVGIIRISGPD----VEAVAKVILGKVPKLRFAEYLSFSDQHNEV-LDQGIALFFKA 70
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ ++ A+ + LR A PGEFS+RAF N+KLDL Q E +
Sbjct: 71 PNSFTGEDVLELQGHGGPVVMDMLIKAILSIKNLRGANPGEFSERAFMNDKLDLAQAEGI 130
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI+A +E + ALH ++G +FSE
Sbjct: 131 ADLIEATSEQAAKSALHSLQG------------------------EFSE----------- 155
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
+I ++S+I L VEA IDF E+E+ + D ++
Sbjct: 156 ------------------------KIEQLVESLIYLRIYVEASIDFPEEEVDFLSDGKIS 191
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
Q++ +++K K G +R G+K VI G PN GKSSL+N L + +IVT
Sbjct: 192 KGLYQIIDNLEAVKKQ----AKQGAILRDGMKVVIAGRPNAGKSSLLNSLVGVERAIVTD 247
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR +I
Sbjct: 248 IAGTTRDVMREHIHIDGMPLHIIDTAGLREGADEI 282
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 69/131 (52%), Gaps = 10/131 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IR+SGPD ++++A KVPK R+A + D ++ VL
Sbjct: 6 DTIVAQATAPGRGGVGIIRISGPD----VEAVAKVILGKVPKLRFAEYLSFSDQHNE-VL 60
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLNAL-KSMACYPDQKVSKPRYASLRNIVDP 142
D+G+ L+F + G V+ + GP ++ L K++ + + + P S R ++
Sbjct: 61 DQGIALFFKAPNSFTGEDVLELQGHGGPVVMDMLIKAILSIKNLRGANPGEFSERAFMND 120
Query: 143 VSEVVLDEGLC 153
++ EG+
Sbjct: 121 KLDLAQAEGIA 131
>gi|325095034|gb|EGC48344.1| tRNA modification GTPase GTPBP3 [Ajellomyces capsulatus H88]
Length = 615
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/345 (33%), Positives = 174/345 (50%), Gaps = 79/345 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVS----EVVLDEGLCL 154
G+ ++++RVSGP + ++ P + + PR A+LR + DP +LD + L
Sbjct: 72 GRAAIAIVRVSGPACVQIYDALC--PKRPLPNPRVAALRTLYDPSVPPSVNTILDRAVVL 129
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTK-----------LPGLRPAEPGEFSKR 203
FP PN+ TGED E +HG AV+ A+L A+ + +P +R AEPGEF++R
Sbjct: 130 HFPAPNTVTGEDVLELHIHGGPAVVKAVLNAIPRCAGAFSNEKIAMPSVRYAEPGEFTRR 189
Query: 204 AFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYI 263
AF N++L L Q EALG+ + AETE QR+ A+ G+L Y W
Sbjct: 190 AFLNDRLSLPQIEALGNTLSAETEHQRRLAVRGTSGSLAFRYERW--------------- 234
Query: 264 DFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDF 323
R Q++ G +E A IDF
Sbjct: 235 ----------------RQQLLYARGEME---------------------------ALIDF 251
Query: 324 SEDEIIEDNI---LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSS 380
SED+ +++I ++++ +V L I HIE ++K G +RSGI+ ++G PN GKSS
Sbjct: 252 SEDQHFDESIEEFVSSITGEVRNLVRQINLHIENASK-GELLRSGIRVALLGAPNAGKSS 310
Query: 381 LMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425
L+N + ++ +IV+S GTTRD+++ +DIGGY D AGLR+
Sbjct: 311 LLNRIVGREAAIVSSEEGTTRDIVDVGVDIGGYFCKFGDMAGLRS 355
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 137/304 (45%), Gaps = 90/304 (29%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVD----PVS 83
+TI+ALS+ G+ ++++RVSGP + ++ P + +P PR A+LR + D P
Sbjct: 62 STIYALSTAPGRAAIAIVRVSGPACVQIYDALC--PKRPLPNPRVAALRTLYDPSVPPSV 119
Query: 84 KVVLDEGLCLWFPR------------HGKCGVSVIRVSGPDTLNALKSMA-CYPDQKVSK 130
+LD + L FP H G +V++ LNA+ A + ++K++
Sbjct: 120 NTILDRAVVLHFPAPNTVTGEDVLELHIHGGPAVVKA----VLNAIPRCAGAFSNEKIAM 175
Query: 131 P--RYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTK 188
P RYA +P FT
Sbjct: 176 PSVRYA-----------------------EPGEFT------------------------- 187
Query: 189 LPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEW 248
+RAF N++L L Q EALG+ + AETE QR+ A+ G+L Y W
Sbjct: 188 -------------RRAFLNDRLSLPQIEALGNTLSAETEHQRRLAVRGTSGSLAFRYERW 234
Query: 249 RQLILESLASVEAYIDFSEDEIIEDNI---LNTVRSQVVQLHGSIEKHIELSNKCGVRIR 305
RQ +L + +EA IDFSED+ +++I ++++ +V L I HIE ++K G +R
Sbjct: 235 RQQLLYARGEMEALIDFSEDQHFDESIEEFVSSITGEVRNLVRQINLHIENASK-GELLR 293
Query: 306 SGIK 309
SGI+
Sbjct: 294 SGIR 297
>gi|149912889|ref|ZP_01901423.1| tRNA modification GTPase TrmE, putative [Roseobacter sp. AzwK-3b]
gi|149813295|gb|EDM73121.1| tRNA modification GTPase TrmE, putative [Roseobacter sp. AzwK-3b]
Length = 428
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 130/343 (37%), Positives = 174/343 (50%), Gaps = 76/343 (22%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
GK GV++IRVSGP A +++A V PR ASLR + P + LDE L L F
Sbjct: 11 QGKAGVAIIRVSGPLAFGAAQALAG----AVPSPREASLRILRAP-DGMRLDEALVLTFA 65
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
+ +SFTGED EF VHGS AV+ A+L AL+ L LRPAEPGEF++RA N LDL
Sbjct: 66 QGHSFTGEDIVEFHVHGSTAVVAAVLDALSTLDDLRPAEPGEFTRRALENGCLDL----- 120
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
A VE D + E
Sbjct: 121 ---------------------------------------AQVEGLADLIDAET------E 135
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASV-EAYIDFSEDEIIEDNILNT 336
+ R Q +++ LS G R + S+I A++ EA IDF+++++ D
Sbjct: 136 SQRRQALRV---------LSGDLGKRAETWRTSLIRAAALLEATIDFADEDVPVD----- 181
Query: 337 VRSQVVQLHGSIEKHIELSNKCGV----RIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
V +V +L S+ +E GV RIRSG + IVG PNVGKS+L+N L + +I
Sbjct: 182 VSPEVTELVTSVTNDLE-REITGVTTAERIRSGFEVAIVGAPNVGKSTLLNALAGRDAAI 240
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
+ + GTTRDVIE +D+GG PV LLDTAG+R T DI+E+ G
Sbjct: 241 TSEVAGTTRDVIEVRMDLGGLPVTLLDTAGIR-ETDDIVESIG 282
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 10/131 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI+ALS+ GK GV++IRVSGP A +++A VP PR ASLR + P + L
Sbjct: 2 DTIYALSTAQGKAGVAIIRVSGPLAFGAAQALAG----AVPSPREASLRILRAP-DGMRL 56
Query: 88 DEGLCLWFPR-HGKCGVSVIR--VSGPDTLNA--LKSMACYPDQKVSKPRYASLRNIVDP 142
DE L L F + H G ++ V G + A L +++ D + ++P + R + +
Sbjct: 57 DEALVLTFAQGHSFTGEDIVEFHVHGSTAVVAAVLDALSTLDDLRPAEPGEFTRRALENG 116
Query: 143 VSEVVLDEGLC 153
++ EGL
Sbjct: 117 CLDLAQVEGLA 127
>gi|269140891|ref|YP_003297592.1| hypothetical protein ETAE_3550 [Edwardsiella tarda EIB202]
gi|387869336|ref|YP_005700805.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Edwardsiella tarda
FL6-60]
gi|267986552|gb|ACY86381.1| hypothetical protein ETAE_3550 [Edwardsiella tarda EIB202]
gi|304560649|gb|ADM43313.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Edwardsiella tarda
FL6-60]
Length = 455
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 119/335 (35%), Positives = 168/335 (50%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSGP +++A K+ KPRYA D +LD+G+ L+FP
Sbjct: 16 GRGGVGILRVSGPQA----QAVALALLGKLPKPRYADYLPFRDH-DGTMLDQGIALYFPG 70
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +LPGLR A PGEFS+RAF N+K+DL Q EA+
Sbjct: 71 PNSFTGEDVLELQGHGGPVILDLLLKRILQLPGLRIARPGEFSERAFLNDKMDLAQAEAI 130
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E
Sbjct: 131 ADLIDASSE-------------------------------------------------QA 141
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
RS V L G RI ++S+I L VEA IDF ++EI + D
Sbjct: 142 ARSAVNSLQGVFS----------ARIHQLVESLIHLRIYVEAAIDFPDEEIDFLSDG--- 188
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
V +Q+ + S+ + + G +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 189 KVEAQLNAVMDSLAG-VRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 247
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 248 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 282
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++RVSGP +++A K+PKPRYA D +L
Sbjct: 6 DTIVAQATAPGRGGVGILRVSGPQA----QAVALALLGKLPKPRYADYLPFRDH-DGTML 60
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ L+FP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 61 DQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILQLPGLRIARPGEFSERAFLN 119
>gi|345428638|ref|YP_004821754.1| GTPase [Haemophilus parainfluenzae T3T1]
gi|301154697|emb|CBW14160.1| GTPase [Haemophilus parainfluenzae T3T1]
Length = 452
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++RVSGP + +++ K KPR A D VLD+G+ L+F
Sbjct: 13 GRGGIGILRVSGPRAVEVAQAVLG----KCPKPRMADYLPFKD-ADGTVLDQGIALYFKS 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L + +L G+R A PGEFS++AF N+KLDL Q EA+
Sbjct: 68 PNSFTGEDVLELQGHGGQVVLDLLLKRILQLDGVRLARPGEFSEQAFLNDKLDLAQAEAI 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G ++ ++ VEA IDF ++EI D + +
Sbjct: 128 ADLIDATSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEASIDFPDEEI--DFLAD- 184
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + EII N L+ VR
Sbjct: 185 ---------GKIEAKLR-------------------------------EII--NQLDLVR 202
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S+ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 203 SEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 247
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T ++
Sbjct: 248 TTRDVLREHIHIDGMPLHIIDTAGLREATDEV 279
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP + +++ K PKPR A D
Sbjct: 1 MKETIVAQATAPGRGGIGILRVSGPRAVEVAQAVLG----KCPKPRMADYLPFKD-ADGT 55
Query: 86 VLDEGLCLWF 95
VLD+G+ L+F
Sbjct: 56 VLDQGIALYF 65
>gi|190348630|gb|EDK41117.2| hypothetical protein PGUG_05215 [Meyerozyma guilliermondii ATCC
6260]
Length = 503
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 120/346 (34%), Positives = 175/346 (50%), Gaps = 66/346 (19%)
Query: 97 RHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWF 156
+ G+ + V+R+SG + K + + + PR A++RN+ S V LD L L+F
Sbjct: 41 KMGRAAIGVVRISGSQSRYIYKKLTKKESEPL--PRVAAVRNLYSSRSGVQLDNALTLFF 98
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG------LRPAEPGEFSKRAFFNNKL 210
P+++TGED E +HG AV+ ++L A+ +L +R AE GEFS+RAF N K
Sbjct: 99 QAPHTYTGEDLLELHLHGGTAVVQSVLKAIEELHQPEKQIFIRYAENGEFSRRAFINGKY 158
Query: 211 DLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEI 270
DL + E + ++I AETE QR +L M G+ L+ WRQ I ++A + IDF ED
Sbjct: 159 DLMEIEGIREMIDAETESQRLASLASMDGSNSGLFRSWRQEIARNVALLTTVIDFGEDHD 218
Query: 271 IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIE 330
IE +V QL G + +I ++ S I+ + A
Sbjct: 219 IE---------EVSQLFGQVGANIH-------QLESSIREYLYRAE-------------- 248
Query: 331 DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQI 390
RSQV + +GIK ++G PN GKSSL+N L K
Sbjct: 249 -------RSQV--------------------LLNGIKLSLLGPPNAGKSSLLNCLASKNA 281
Query: 391 SIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT-TTSDIIETEG 435
+IV+ I GTTRD+I+ LDI GY +I+ DTAG+R+ +D IE EG
Sbjct: 282 AIVSEIAGTTRDIIDIPLDINGYKIIIGDTAGIRSLEDADTIEKEG 327
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 19 RRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNI 78
RR + TI+ALS+ G+ + V+R+SG + K + + P PR A++RN+
Sbjct: 24 RRVATSDYSPTIYALSTKMGRAAIGVVRISGSQSRYIYKKLT--KKESEPLPRVAAVRNL 81
Query: 79 VDPVSKVVLDEGLCLWF 95
S V LD L L+F
Sbjct: 82 YSSRSGVQLDNALTLFF 98
>gi|386017831|ref|YP_005936131.1| tRNA modification GTPase TrmE [Pantoea ananatis AJ13355]
gi|327395913|dbj|BAK13335.1| tRNA modification GTPase TrmE [Pantoea ananatis AJ13355]
Length = 454
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 168/340 (49%), Gaps = 81/340 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SGP + + K+ KPRYA + D V LD+G+ LWFP
Sbjct: 15 GRGGVGILRISGPRAAEVAQQILG----KLPKPRYADYLSFNDSDGSV-LDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG +++ +L + LPGLR A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PHSFTGEDVLELQGHGGPVILDLLLKRIVALPGLRIAQPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI-------IE 330
RS V L G+ VRI ++++ L VEA IDF ++EI IE
Sbjct: 141 ARSAVNSLQGAFS----------VRINHLVEALTHLRIYVEAAIDFPDEEIDFLSDGKIE 190
Query: 331 DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQI 390
LNTV S + + K G +R G+K VI G PN GKSSL+N L ++
Sbjct: 191 GQ-LNTVISDL--------DAVRAEAKQGSLLREGMKVVIAGRPNAGKSSLLNALAGREA 241
Query: 391 SIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
+IVT I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 12/168 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SGP + + K+PKPRYA + D VL
Sbjct: 5 DTIVAQATSPGRGGVGILRISGPRAAEVAQQILG----KLPKPRYADYLSFNDS-DGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVDP 142
D+G+ LWFP H G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRIVALPGLRIAQPGEFSERAFLND 119
Query: 143 VSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAV-INAILGALTKL 189
++ E + + + G+ +V IN ++ ALT L
Sbjct: 120 KLDLAQAEAIADLIDASSEQAARSAVN-SLQGAFSVRINHLVEALTHL 166
>gi|292493916|ref|YP_003529355.1| tRNA modification GTPase TrmE [Nitrosococcus halophilus Nc4]
gi|291582511|gb|ADE16968.1| tRNA modification GTPase TrmE [Nitrosococcus halophilus Nc4]
Length = 458
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/337 (36%), Positives = 170/337 (50%), Gaps = 67/337 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ V+RVSGP + +A + ++ PRYA+ D E + D GL L+FP
Sbjct: 24 GRGGIGVVRVSGP----LCRQVAKHITGRLPPPRYAAFSRFRDGEGETI-DRGLALYFPS 78
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ +L + +L G+R A PGEFS+RAF NNK+DL Q EA+
Sbjct: 79 PHSFTGEDVLELQGHGGPVVMDWLLSCVLQL-GVRLARPGEFSERAFLNNKIDLAQAEAI 137
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
++IE
Sbjct: 138 A-------------------------------------------------DLIESASEQA 148
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS + LHG I+ +R + + CL VEA IDFS+++I D I
Sbjct: 149 ARSALRSLHGEFSAQIQ-------DLRDQLIELRCL--VEADIDFSDEDI--DFIEQGAV 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ +Q SI + I S + G +R GI+ V+VG PNVGKSSL N L + +IVT +PG
Sbjct: 198 AERLQELQSILRRIHRSARQGALLREGIRVVLVGRPNVGKSSLHNRLAGFEAAIVTDVPG 257
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD++ +H+ I G P+ L DTAGL + DIIE EG
Sbjct: 258 TTRDLLREHITIDGLPIRLSDTAGLHDSM-DIIEQEG 293
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 9/121 (7%)
Query: 25 AIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSK 84
+ +TI A+++ G+ G+ V+RVSGP + +A + ++P PRYA+ D +
Sbjct: 11 GLSDTIAAIATPPGRGGIGVVRVSGP----LCRQVAKHITGRLPPPRYAAFSRFRDGEGE 66
Query: 85 VVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLNALKSMACYPDQKVSKPRYASLRNIV 140
+ D GL L+FP H G V+ + GP ++ L S ++++P S R +
Sbjct: 67 TI-DRGLALYFPSPHSFTGEDVLELQGHGGPVVMDWLLSCVLQLGVRLARPGEFSERAFL 125
Query: 141 D 141
+
Sbjct: 126 N 126
>gi|240277090|gb|EER40600.1| tRNA modification GTPase GTPBP3 [Ajellomyces capsulatus H143]
Length = 615
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/345 (33%), Positives = 174/345 (50%), Gaps = 79/345 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVS----EVVLDEGLCL 154
G+ ++++RVSGP + ++ P + + PR A+LR + DP +LD + L
Sbjct: 72 GRAAIAIVRVSGPACVQIYDALC--PKRPLPNPRVAALRTLYDPSVPPSVNTILDRAVVL 129
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTK-----------LPGLRPAEPGEFSKR 203
FP PN+ TGED E +HG AV+ A+L A+ + +P +R AEPGEF++R
Sbjct: 130 HFPAPNTVTGEDVLELHIHGGPAVVKAVLNAIPRCAGAFSNEKIAMPSVRYAEPGEFTRR 189
Query: 204 AFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYI 263
AF N++L L Q EALG+ + AETE QR+ A+ G+L Y W
Sbjct: 190 AFLNDRLSLPQIEALGNTLSAETEHQRRLAVRGTSGSLAFRYERW--------------- 234
Query: 264 DFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDF 323
R Q++ G +E A IDF
Sbjct: 235 ----------------RQQLLYARGEME---------------------------ALIDF 251
Query: 324 SEDEIIEDNI---LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSS 380
SED+ +++I ++++ +V L I HIE ++K G +RSGI+ ++G PN GKSS
Sbjct: 252 SEDQHFDESIEEFVSSITGEVRNLVRQINLHIENASK-GELLRSGIRVALLGAPNAGKSS 310
Query: 381 LMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425
L+N + ++ +IV+S GTTRD+++ +DIGGY D AGLR+
Sbjct: 311 LLNRIVGREAAIVSSEEGTTRDIVDVGVDIGGYFCKFGDMAGLRS 355
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 137/304 (45%), Gaps = 90/304 (29%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVD----PVS 83
+TI+ALS+ G+ ++++RVSGP + ++ P + +P PR A+LR + D P
Sbjct: 62 STIYALSTAPGRAAIAIVRVSGPACVQIYDALC--PKRPLPNPRVAALRTLYDPSVPPSV 119
Query: 84 KVVLDEGLCLWFPR------------HGKCGVSVIRVSGPDTLNALKSMA-CYPDQKVSK 130
+LD + L FP H G +V++ LNA+ A + ++K++
Sbjct: 120 NTILDRAVVLHFPAPNTVTGEDVLELHIHGGPAVVKA----VLNAIPRCAGAFSNEKIAM 175
Query: 131 P--RYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTK 188
P RYA +P FT
Sbjct: 176 PSVRYA-----------------------EPGEFT------------------------- 187
Query: 189 LPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEW 248
+RAF N++L L Q EALG+ + AETE QR+ A+ G+L Y W
Sbjct: 188 -------------RRAFLNDRLSLPQIEALGNTLSAETEHQRRLAVRGTSGSLAFRYERW 234
Query: 249 RQLILESLASVEAYIDFSEDEIIEDNI---LNTVRSQVVQLHGSIEKHIELSNKCGVRIR 305
RQ +L + +EA IDFSED+ +++I ++++ +V L I HIE ++K G +R
Sbjct: 235 RQQLLYARGEMEALIDFSEDQHFDESIEEFVSSITGEVRNLVRQINLHIENASK-GELLR 293
Query: 306 SGIK 309
SGI+
Sbjct: 294 SGIR 297
>gi|90194138|gb|ABD92630.1| ThdF [Pasteurella multocida subsp. septica]
Length = 433
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++RVSGP + ++ K KPR A D V LD+G+ L+F
Sbjct: 4 GRGGIGILRVSGPKAVEVAHAVLG----KCPKPRMADYLPFKDSDGSV-LDQGIALYFKA 58
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ +L + +L GLR A PGEFS++AF N+KLDL Q EA+
Sbjct: 59 PHSFTGEDVLELQGHGGQVVLDLLLKRILQLEGLRLARPGEFSEQAFLNDKLDLAQAEAI 118
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G ++ ++ VEA IDF ++EI D + +
Sbjct: 119 ADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEEI--DFLAD- 175
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE H+ ++II L+ VR
Sbjct: 176 ---------GKIEAHL-------------------------------NDIITQ--LDHVR 193
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S+ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 194 SEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 238
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T ++
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLREATDEV 270
>gi|343507253|ref|ZP_08744695.1| tRNA modification GTPase TrmE [Vibrio ichthyoenteri ATCC 700023]
gi|342800273|gb|EGU35813.1| tRNA modification GTPase TrmE [Vibrio ichthyoenteri ATCC 700023]
Length = 453
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP + +A K +PRYA D LD+G+ L+FP
Sbjct: 14 GRGGVGIIRVSGP----LAEKVALEVAGKTLRPRYAEYLPFCDEAGNQ-LDQGIALYFPN 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ ++ + K+ G+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 69 PHSFTGEDVLELQGHGGPVVMDMLIKRILKIDGIRTARPGEFSERAFLNDKLDLAQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G Q + ++ VEA IDF E+EI D + +
Sbjct: 129 ADLIDASSEEAAKSALQSLQGAFSQRINTLVDSLIYLRIYVEAAIDFPEEEI--DFLADG 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
++ + ++++I DN L VR
Sbjct: 187 ------------------------KVSADLQAII------------------DN-LAAVR 203
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ Q GSI +R G+K VI G PN GKSSL+N L K+ +IVT I G
Sbjct: 204 QEANQ--GSI-------------MREGMKVVIAGRPNAGKSSLLNALSGKESAIVTDIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 249 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 280
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + +A K +PRYA D L
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGP----LAEKVALEVAGKTLRPRYAEYLPFCDEAGN-QL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALYFPNPHSFTGEDVLELQG 82
>gi|146313778|ref|YP_001178852.1| tRNA modification GTPase TrmE [Enterobacter sp. 638]
gi|166991109|sp|A4WGH1.1|MNME_ENT38 RecName: Full=tRNA modification GTPase MnmE
gi|145320654|gb|ABP62801.1| tRNA modification GTPase trmE [Enterobacter sp. 638]
gi|190171238|gb|ACE63689.1| ThdF [Enterobacter sp. 638]
Length = 454
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFND-ADGTALDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ +L+ +S ++E+L + Y
Sbjct: 130 ADLIDASSEQAARSALN----SLQGAFSTRVNHLVEALTHLRIY---------------- 169
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+E I+ ++ IDF D IE LNTV
Sbjct: 170 -----------VEAAIDFPDE--------------------EIDFLSDGKIEAQ-LNTVM 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + + + G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 198 ADL--------DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFND-ADGTAL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P +++KP S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLN 118
>gi|260774545|ref|ZP_05883458.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio metschnikovii
CIP 69.14]
gi|260610451|gb|EEX35657.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio metschnikovii
CIP 69.14]
Length = 453
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 170/339 (50%), Gaps = 79/339 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVS----KPRYASLRNIVDPVSEVVLDEGLCL 154
G+ GV +IRVSGP A + ++V+ KPRYA D LD+G+ L
Sbjct: 14 GRGGVGIIRVSGP--------QAAFVAKQVTGMDLKPRYAKYLPFKD-ADGAELDQGIAL 64
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
+FP P+SFTGED E Q HG V++ ++ + +PGLRPA PGEFS+RAF N+KLDLTQ
Sbjct: 65 YFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILAIPGLRPARPGEFSERAFLNDKLDLTQ 124
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
EA+ DLI A +E
Sbjct: 125 AEAIADLIDASSE----------------------------------------------- 137
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IED 331
+S + L G K RI + ++S+I L VEA IDF E+EI + D
Sbjct: 138 --QAAKSALQSLQGQFSK----------RINTLVESLIHLRIYVEAAIDFPEEEIDFLAD 185
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
++ ++ ++ + +N+ G +R G+K VI G PN GKSSL+N L K +
Sbjct: 186 GKVSADLQAIIDNLAAVRQE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKDSA 241
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
IVT I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 280
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP K + KPRYA D L
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPQAAFVAKQVTGMD----LKPRYAKYLPFKD-ADGAEL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLNAL-KSMACYPDQKVSKPRYASLRNIVD 141
D+G+ L+FP H G V+ + GP ++ L K + P + ++P S R ++
Sbjct: 59 DQGIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILAIPGLRPARPGEFSERAFLN 117
>gi|291615647|ref|YP_003518389.1| TrmE [Pantoea ananatis LMG 20103]
gi|378769292|ref|YP_005197767.1| tRNA modification GTPase TrmE [Pantoea ananatis LMG 5342]
gi|386081362|ref|YP_005994887.1| tRNA modification GTPase TrmE [Pantoea ananatis PA13]
gi|291150677|gb|ADD75261.1| TrmE [Pantoea ananatis LMG 20103]
gi|354990543|gb|AER34667.1| tRNA modification GTPase TrmE [Pantoea ananatis PA13]
gi|365188780|emb|CCF11730.1| tRNA modification GTPase TrmE [Pantoea ananatis LMG 5342]
Length = 454
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 168/340 (49%), Gaps = 81/340 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SGP + + K+ KPRYA + D V LD+G+ LWFP
Sbjct: 15 GRGGVGILRISGPRAAEVAQQILG----KLPKPRYADYLSFNDSDGSV-LDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG +++ +L + LPGLR A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PHSFTGEDVLELQGHGGPVILDLLLKRIVALPGLRIAQPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI-------IE 330
RS V L G+ VRI ++++ L VEA IDF ++EI IE
Sbjct: 141 ARSAVNSLQGAFS----------VRINHLVEALTHLRIYVEAAIDFPDEEIDFLSDGKIE 190
Query: 331 DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQI 390
LNTV S + + K G +R G+K VI G PN GKSSL+N L ++
Sbjct: 191 GQ-LNTVISDL--------DAVRAEAKQGSLLREGMKVVIAGRPNAGKSSLLNALAGREA 241
Query: 391 SIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
+IVT I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 12/168 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SGP + + K+PKPRYA + D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGPRAAEVAQQILG----KLPKPRYADYLSFNDS-DGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVDP 142
D+G+ LWFP H G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRIVALPGLRIAQPGEFSERAFLND 119
Query: 143 VSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAV-INAILGALTKL 189
++ E + + + G+ +V IN ++ ALT L
Sbjct: 120 KLDLAQAEAIADLIDASSEQAARSAVN-SLQGAFSVRINHLVEALTHL 166
>gi|449300534|gb|EMC96546.1| hypothetical protein BAUCODRAFT_480285 [Baudoinia compniacensis
UAMH 10762]
Length = 609
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/366 (33%), Positives = 179/366 (48%), Gaps = 80/366 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDP----VSEVVLD-EGLC 153
G+ ++VIR+SG L+ + + P + + KPRYA++R + DP E VLD L
Sbjct: 83 GRAAIAVIRISGYACLDIYRRLC--PGKALPKPRYATVRTLHDPNKRPAPETVLDANALI 140
Query: 154 LWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTK------LPGLRPAEPGEFSKRAFFN 207
+FP P + TGED E VHG AV+ A+L A+ +R AE GEF+KRAF N
Sbjct: 141 FYFPAPRTATGEDVLELHVHGGTAVVKAVLSAVPTCASEGDFKSIRYAEAGEFTKRAFLN 200
Query: 208 NKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSE 267
+LDLTQ EALGD + A TE QR+ ++ L + Y EW
Sbjct: 201 GRLDLTQVEALGDTLAAITEEQRRLSMRATTSTLSKQYEEW------------------- 241
Query: 268 DEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDE 327
R Q++ G +E A IDFSED+
Sbjct: 242 ------------RRQLLYARGELE---------------------------ALIDFSEDQ 262
Query: 328 IIEDN---ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNF 384
+++ + +V +QV +L +++ H + + G +R+GI ++G PN GKSSL+N
Sbjct: 263 HFDESPAELCRSVSTQVRKLRRTLQIHSANATR-GELLRNGISVSLLGAPNAGKSSLLNR 321
Query: 385 LCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG-----NLLE 439
+ ++ +IV+ GTTRDV+E LDIGG+ L DTAGLR I + G L+E
Sbjct: 322 IVGREAAIVSQEAGTTRDVVEVGLDIGGFLCQLGDTAGLRKAQKAIAQQPGAEGALGLVE 381
Query: 440 KNNQQR 445
+ +R
Sbjct: 382 EEGMRR 387
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 140/295 (47%), Gaps = 78/295 (26%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVD----PVS 83
+TI+ALS+ G+ ++VIR+SG L+ + + P + +PKPRYA++R + D P
Sbjct: 73 STIYALSTAPGRAAIAVIRISGYACLDIYRRLC--PGKALPKPRYATVRTLHDPNKRPAP 130
Query: 84 KVVLD-EGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDP 142
+ VLD L +FP PR A+ +++
Sbjct: 131 ETVLDANALIFYFP---------------------------------APRTATGEDVL-- 155
Query: 143 VSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTK------LPGLRPAE 196
E VHG AV+ A+L A+ +R AE
Sbjct: 156 --------------------------ELHVHGGTAVVKAVLSAVPTCASEGDFKSIRYAE 189
Query: 197 PGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESL 256
GEF+KRAF N +LDLTQ EALGD + A TE QR+ ++ L + Y EWR+ +L +
Sbjct: 190 AGEFTKRAFLNGRLDLTQVEALGDTLAAITEEQRRLSMRATTSTLSKQYEEWRRQLLYAR 249
Query: 257 ASVEAYIDFSEDEIIEDN---ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGI 308
+EA IDFSED+ +++ + +V +QV +L +++ H + + G +R+GI
Sbjct: 250 GELEALIDFSEDQHFDESPAELCRSVSTQVRKLRRTLQIHSANATR-GELLRNGI 303
>gi|163757466|ref|ZP_02164555.1| putative tRNA modification GTPase [Hoeflea phototrophica DFL-43]
gi|162284968|gb|EDQ35250.1| putative tRNA modification GTPase [Hoeflea phototrophica DFL-43]
Length = 395
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 158/288 (54%), Gaps = 60/288 (20%)
Query: 148 LDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFN 207
LD GL L+FP P+SFTGED E +HGS A + A+L ALT L G R AEPGEF+++AF N
Sbjct: 15 LDRGLVLFFPAPHSFTGEDVAELHIHGSRASVAAVLMALTDLDGFRLAEPGEFTRQAFEN 74
Query: 208 NKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSE 267
KLDLT+ E L DLI+AETE S+ RQ +L++
Sbjct: 75 GKLDLTEVEGLSDLIRAETE------------------SQRRQALLQA------------ 104
Query: 268 DEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDE 327
D +L + L+ + + + A +EA +DFS+++
Sbjct: 105 -----DGVLRS-------LYEGWARRLTHAR----------------AMIEAELDFSDED 136
Query: 328 IIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQ 387
I ++ + + + L I H+E ++ V +R G + ++G PN GKSSL+N+L +
Sbjct: 137 DIPGSVSDQIWKDMGLLLAEIRSHLECASAAEV-VRDGYRIALIGPPNAGKSSLLNYLSK 195
Query: 388 KQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
+ ++IV+ IPGTTRDV+E LDI GY V+L DTAGLR +SD IE EG
Sbjct: 196 RDVAIVSDIPGTTRDVVEVRLDIAGYLVVLQDTAGLR-ESSDQIEIEG 242
>gi|373466595|ref|ZP_09557909.1| tRNA modification GTPase TrmE [Haemophilus sp. oral taxon 851 str.
F0397]
gi|371760377|gb|EHO49066.1| tRNA modification GTPase TrmE [Haemophilus sp. oral taxon 851 str.
F0397]
Length = 461
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++RVSGP + +++ K KPR A D VLD+G+ L+F
Sbjct: 22 GRGGIGILRVSGPLATDVAQAVLG----KCPKPRMADYLPFKD-ADGTVLDQGIALYFKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L + ++ G+R A PGEFS++AF N+KLDL Q EA+
Sbjct: 77 PNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLDLAQAEAI 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G + +E ++ VEA IDF ++EI D + +
Sbjct: 137 ADLIDATSEQAARSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEEI--DFLADG 194
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+I + ++ +I N L VR
Sbjct: 195 ------------------------KIEANLRGII-------------------NQLEDVR 211
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S+ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 212 SEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNVLAGREAAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T ++
Sbjct: 257 TTRDVLREHIHIDGMPLHIIDTAGLRDATDEV 288
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP + +++ K PKPR A D
Sbjct: 10 MKETIVAQATAPGRGGIGILRVSGPLATDVAQAVLG----KCPKPRMADYLPFKD-ADGT 64
Query: 86 VLDEGLCLWF 95
VLD+G+ L+F
Sbjct: 65 VLDQGIALYF 74
>gi|374704464|ref|ZP_09711334.1| tRNA modification GTPase TrmE [Pseudomonas sp. S9]
Length = 455
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 123/338 (36%), Positives = 171/338 (50%), Gaps = 78/338 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSGP ++MA Q+ KPRYA ++ VLDEGL L+FP
Sbjct: 16 GRGGVGIVRVSGP----LARAMAHAFCQRELKPRYAHYGPFYSE-ADTVLDEGLALYFPG 70
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L +L G R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 71 PNSFTGEDVLELQGHGGPVVLDLLLRRCVQL-GARLARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI+A +E + AL ++G +
Sbjct: 130 ADLIEASSEQAARNALRSLQGEFSR----------------------------------- 154
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI--IED----N 332
++HG E+ I L RI VEA IDF E+EI + D +
Sbjct: 155 ------RVHGLTERLISL------RI-----------YVEAAIDFPEEEIDFLADGHVLS 191
Query: 333 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
+L VR++++ ++ G +R G+ VI G PN GKSSL+N L ++ +I
Sbjct: 192 LLEEVRAELL--------NVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGREAAI 243
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
VT I GTTRDV+ +H+ I G P+ ++DTAGLR T +
Sbjct: 244 VTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTEDHV 281
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TI A+++ G+ GV ++RVSGP ++MA Q+ KPRYA + VL
Sbjct: 6 ETIAAVATAQGRGGVGIVRVSGP----LARAMAHAFCQRELKPRYAHYGPFYSE-ADTVL 60
Query: 88 DEGLCLWFP 96
DEGL L+FP
Sbjct: 61 DEGLALYFP 69
>gi|154276802|ref|XP_001539246.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414319|gb|EDN09684.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1231
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/345 (33%), Positives = 174/345 (50%), Gaps = 79/345 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVS----EVVLDEGLCL 154
G+ ++++RVSGP + ++ P + + PR A+LR + DP +LD + L
Sbjct: 688 GRAAIAIVRVSGPACVQIYDALC--PKRPLPNPRVAALRTLFDPSVPPSVNSILDRAVVL 745
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTK-----------LPGLRPAEPGEFSKR 203
FP PN+ TGED E +HG AV+ A+L A+ + +P +R AEPGEF++R
Sbjct: 746 HFPAPNTVTGEDVLELHIHGGPAVVKAVLNAIPRCAGAFSNEKIAMPSIRYAEPGEFTRR 805
Query: 204 AFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYI 263
AF N++L L Q EALG+ + AETE QR+ A+ G+L Y W
Sbjct: 806 AFLNDRLSLPQIEALGNTLSAETEHQRRLAVRGTSGSLAFRYERW--------------- 850
Query: 264 DFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDF 323
R Q++ G +E A IDF
Sbjct: 851 ----------------RQQLLYARGEME---------------------------ALIDF 867
Query: 324 SEDEIIEDNI---LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSS 380
SED+ +++I ++++ +V L I HIE ++K G +RSGI+ ++G PN GKSS
Sbjct: 868 SEDQHFDESIEEFVSSITGEVRNLVRQINLHIENASK-GELLRSGIRVALLGAPNAGKSS 926
Query: 381 LMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425
L+N + ++ +IV+S GTTRD+++ +DIGGY D AGLR+
Sbjct: 927 LLNRIVGREAAIVSSEEGTTRDIVDVGVDIGGYFCKFGDMAGLRS 971
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 137/304 (45%), Gaps = 90/304 (29%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVD----PVS 83
+TI+ALS+ G+ ++++RVSGP + ++ P + +P PR A+LR + D P
Sbjct: 678 STIYALSTAPGRAAIAIVRVSGPACVQIYDALC--PKRPLPNPRVAALRTLFDPSVPPSV 735
Query: 84 KVVLDEGLCLWFPR------------HGKCGVSVIRVSGPDTLNALKSMA-CYPDQKVSK 130
+LD + L FP H G +V++ LNA+ A + ++K++
Sbjct: 736 NSILDRAVVLHFPAPNTVTGEDVLELHIHGGPAVVKA----VLNAIPRCAGAFSNEKIAM 791
Query: 131 P--RYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTK 188
P RYA +P FT
Sbjct: 792 PSIRYA-----------------------EPGEFT------------------------- 803
Query: 189 LPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEW 248
+RAF N++L L Q EALG+ + AETE QR+ A+ G+L Y W
Sbjct: 804 -------------RRAFLNDRLSLPQIEALGNTLSAETEHQRRLAVRGTSGSLAFRYERW 850
Query: 249 RQLILESLASVEAYIDFSEDEIIEDNI---LNTVRSQVVQLHGSIEKHIELSNKCGVRIR 305
RQ +L + +EA IDFSED+ +++I ++++ +V L I HIE ++K G +R
Sbjct: 851 RQQLLYARGEMEALIDFSEDQHFDESIEEFVSSITGEVRNLVRQINLHIENASK-GELLR 909
Query: 306 SGIK 309
SGI+
Sbjct: 910 SGIR 913
>gi|146412448|ref|XP_001482195.1| hypothetical protein PGUG_05215 [Meyerozyma guilliermondii ATCC
6260]
Length = 503
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 120/346 (34%), Positives = 175/346 (50%), Gaps = 66/346 (19%)
Query: 97 RHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWF 156
+ G+ + V+R+SG + K + + + PR A++RN+ S V LD L L+F
Sbjct: 41 KMGRAAIGVVRISGSQSRYIYKKLTKKESEPL--PRVAAVRNLYSSRSGVQLDNALTLFF 98
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG------LRPAEPGEFSKRAFFNNKL 210
P+++TGED E +HG AV+ ++L A+ +L +R AE GEFS+RAF N K
Sbjct: 99 QAPHTYTGEDLLELHLHGGTAVVQSVLKAIEELHQPEKQIFIRYAENGEFSRRAFINGKY 158
Query: 211 DLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEI 270
DL + E + ++I AETE QR +L M G+ L+ WRQ I ++A + IDF ED
Sbjct: 159 DLMEIEGIREMIDAETESQRLASLASMDGSNSGLFRSWRQEIARNVALLTTVIDFGEDHD 218
Query: 271 IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIE 330
IE +V QL G + +I ++ S I+ + A
Sbjct: 219 IE---------EVSQLFGQVGANIH-------QLESSIREYLYRAE-------------- 248
Query: 331 DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQI 390
RSQV + +GIK ++G PN GKSSL+N L K
Sbjct: 249 -------RSQV--------------------LLNGIKLSLLGPPNAGKSSLLNCLASKNA 281
Query: 391 SIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT-TTSDIIETEG 435
+IV+ I GTTRD+I+ LDI GY +I+ DTAG+R+ +D IE EG
Sbjct: 282 AIVSEIAGTTRDIIDIPLDINGYKIIIGDTAGIRSLEDADTIEKEG 327
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 19 RRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNI 78
RR + TI+ALS+ G+ + V+R+SG + K + + P PR A++RN+
Sbjct: 24 RRVATSDYSPTIYALSTKMGRAAIGVVRISGSQSRYIYKKLT--KKESEPLPRVAAVRNL 81
Query: 79 VDPVSKVVLDEGLCLWF 95
S V LD L L+F
Sbjct: 82 YSSRSGVQLDNALTLFF 98
>gi|56461736|ref|YP_157017.1| tRNA modification GTPase TrmE [Idiomarina loihiensis L2TR]
gi|81821749|sp|Q5QZJ5.1|MNME_IDILO RecName: Full=tRNA modification GTPase MnmE
gi|56180746|gb|AAV83468.1| ThdF [Idiomarina loihiensis L2TR]
Length = 458
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 123/335 (36%), Positives = 173/335 (51%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG A K +A KPR A D + E +LDEG+ L+FP
Sbjct: 19 GRGGVGIVRVSG----KACKEVAEKLLGHCPKPRKAEYLPFYD-LQEQLLDEGIALFFPG 73
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +I+ I+ A+ ++PG+RPA PGEFS+RAF N+KLDLTQ EA+
Sbjct: 74 PNSFTGEDVLELQGHGGPVIIDMIIRAILEIPGIRPARPGEFSERAFLNDKLDLTQAEAI 133
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI +E K L+ L E+ I D +++
Sbjct: 134 ADLIDTNSE-------QAAKAALQSLKGEFSHKI--------------------DQLVDA 166
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI--IEDNILNT 336
V +H +RI VEA IDF ++EI + D ++
Sbjct: 167 V------IH--------------LRI-----------YVEAAIDFPDEEIDFLSDGKVSG 195
Query: 337 VRSQVV-QLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
++++ QL HIE K G +R G++ VI G PN GKSSL+N L ++ +IVT
Sbjct: 196 DLAEIIDQLF-----HIEQEAKQGTLMREGMRIVIAGRPNAGKSSLLNALAGRESAIVTE 250
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I P+ ++DTAGLR + +
Sbjct: 251 IAGTTRDVLREHIQIDSMPLHIIDTAGLRESPDHV 285
>gi|90194066|gb|ABD92594.1| ThdF [Pasteurella multocida]
Length = 436
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++RVSGP + ++ K KPR A D V LD+G+ L+F
Sbjct: 4 GRGGIGILRVSGPKAVEVAHAVLG----KCPKPRMADYLPFKDSDGNV-LDQGIALYFKA 58
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ +L + +L GLR A PGEFS++AF N+KLDL Q EA+
Sbjct: 59 PHSFTGEDVLELQGHGGQVVLDLLLKRILQLEGLRLARPGEFSEQAFLNDKLDLAQAEAI 118
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G ++ ++ VEA IDF ++EI D + +
Sbjct: 119 ADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEEI--DFLAD- 175
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE H+ ++II L+ VR
Sbjct: 176 ---------GKIEAHL-------------------------------NDIITQ--LDHVR 193
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S+ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 194 SEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 238
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T ++
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLREATDEV 270
>gi|425066027|ref|ZP_18469147.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pasteurella
multocida subsp. gallicida P1059]
gi|404382567|gb|EJZ79027.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pasteurella
multocida subsp. gallicida P1059]
Length = 452
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++RVSGP + ++ K KPR A D V LD+G+ L+F
Sbjct: 13 GRGGIGILRVSGPKAVEVAHAVLG----KCPKPRMADYLPFKDSDGNV-LDQGIALYFKA 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ +L + +L GLR A PGEFS++AF N+KLDL Q EA+
Sbjct: 68 PHSFTGEDVLELQGHGGQVVLDLLLKRILQLEGLRLARPGEFSEQAFLNDKLDLAQAEAI 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G ++ ++ VEA IDF ++EI D + +
Sbjct: 128 ADLIDASSEQAARSALKSLQGQFSNKVNQLVDSVIYLRTYVEAAIDFPDEEI--DFLAD- 184
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE H+ ++II L+ VR
Sbjct: 185 ---------GKIEAHL-------------------------------NDIITQ--LDHVR 202
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S+ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 203 SEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 247
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T ++
Sbjct: 248 TTRDVLREHIHIDGMPLHIIDTAGLREATDEV 279
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP + ++ K PKPR A D
Sbjct: 1 MKETIVAQATAPGRGGIGILRVSGPKAVEVAHAVLG----KCPKPRMADYLPFKDSDGN- 55
Query: 86 VLDEGLCLWFPR-HGKCGVSVIRVSG 110
VLD+G+ L+F H G V+ + G
Sbjct: 56 VLDQGIALYFKAPHSFTGEDVLELQG 81
>gi|90194136|gb|ABD92629.1| ThdF [Pasteurella multocida subsp. gallicida]
Length = 436
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++RVSGP + ++ K KPR A D V LD+G+ L+F
Sbjct: 4 GRGGIGILRVSGPKAVEVAHAVLG----KCPKPRMADYLPFKDSDGNV-LDQGIALYFKA 58
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ +L + +L GLR A PGEFS++AF N+KLDL Q EA+
Sbjct: 59 PHSFTGEDVLELQGHGGQVVLDLLLKRILQLEGLRLARPGEFSEQAFLNDKLDLAQAEAI 118
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G ++ ++ VEA IDF ++EI D + +
Sbjct: 119 ADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEEI--DFLAD- 175
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE H+ ++II L+ VR
Sbjct: 176 ---------GKIEAHL-------------------------------NDIITQ--LDHVR 193
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S+ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 194 SEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 238
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T ++
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLREATDEV 270
>gi|296114339|ref|ZP_06832993.1| tRNA modification GTPase TrmE [Gluconacetobacter hansenii ATCC
23769]
gi|295979100|gb|EFG85824.1| tRNA modification GTPase TrmE [Gluconacetobacter hansenii ATCC
23769]
Length = 431
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 172/344 (50%), Gaps = 76/344 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNI----VDPVSEVVLDEGLCL 154
G+ ++V+R+SG L+S+ C + +PR ASLR I D V+LD + L
Sbjct: 13 GRAAIAVMRISGAGCDAILRSL-C---GGLPEPRRASLRGIWRRDADAGPGVLLDRAVVL 68
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
WFP PNS+TGED E +H AVI + AL L G RPAEPGEF++RAF +LDL Q
Sbjct: 69 WFPGPNSYTGEDSAELHLHAGPAVIAGVADALVAL-GARPAEPGEFTRRAFAGGRLDLVQ 127
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEI---I 271
E + DLI AETE QR++AL Q G +LY +W + +LA EA IDF ++++ +
Sbjct: 128 AEGIADLIDAETEAQRRQALAQADGAQSRLYEDWAARLRTALAHQEALIDFPDEDLPPEV 187
Query: 272 EDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIED 331
ED +L T + QL ++ +++ ++ G R+R G+ I E + +
Sbjct: 188 EDALLGT----LAQLRDEMQAYLDDGSQ-GERLRRGLVFTIV----------GEPNVGKS 232
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
++LNT L Q+ +
Sbjct: 233 SLLNT------------------------------------------------LAQRDAA 244
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IV+S GTTRD IE + +G PVI++DTAGLR T D IE EG
Sbjct: 245 IVSSRAGTTRDAIEVRIVLGDVPVIVVDTAGLR-ETDDEIEAEG 287
>gi|152979629|ref|YP_001345258.1| tRNA modification GTPase TrmE [Actinobacillus succinogenes 130Z]
gi|205829052|sp|A6VQS6.1|MNME_ACTSZ RecName: Full=tRNA modification GTPase MnmE
gi|150841352|gb|ABR75323.1| tRNA modification GTPase TrmE [Actinobacillus succinogenes 130Z]
Length = 452
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 171/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSGP + K++ K KPR+A+ D LD+G+ L+F
Sbjct: 13 GRGGVGILRVSGPLAADVAKAVVG----KALKPRFANYLPFKDE-DGTTLDQGIALFFQS 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L + ++ G+R A PGEFS++AF N+KLDL Q EA+
Sbjct: 68 PNSFTGEDILELQGHGGQVVLDLLLKRILQVNGVRLARPGEFSEQAFLNDKLDLAQAEAI 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G ++ ++ VEA IDF ++EI D + +
Sbjct: 128 ADLIDASSEQAARSALKSLQGEFSNKVNQLVDGVIYLRTYVEAAIDFPDEEI--DFLAD- 184
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE H+ ++II L VR
Sbjct: 185 ---------GKIEGHL-------------------------------NDIIAQ--LERVR 202
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S+ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 203 SEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 247
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T ++
Sbjct: 248 TTRDVLREHIHIDGMPLHIIDTAGLRDATDEV 279
>gi|417851166|ref|ZP_12496940.1| tRNA modification GTPase TrmE [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
gi|338219941|gb|EGP05530.1| tRNA modification GTPase TrmE [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
Length = 452
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++RVSGP + ++ K KPR A D V LD+G+ L+F
Sbjct: 13 GRGGIGILRVSGPKAVEVAHAVLG----KCPKPRMADYLPFKDSDGNV-LDQGIALYFKA 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ +L + +L GLR A PGEFS++AF N+KLDL Q EA+
Sbjct: 68 PHSFTGEDVLELQGHGGQVVLDLLLKRILQLEGLRLARPGEFSEQAFLNDKLDLAQAEAI 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G ++ ++ VEA IDF ++EI D + +
Sbjct: 128 ADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEEI--DFLAD- 184
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE H+ ++II L+ VR
Sbjct: 185 ---------GKIEAHL-------------------------------NDIITQ--LDHVR 202
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S+ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 203 SEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 247
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T ++
Sbjct: 248 TTRDVLREHIHIDGMPLHIIDTAGLREATDEV 279
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP + ++ K PKPR A D
Sbjct: 1 MKETIVAQATAPGRGGIGILRVSGPKAVEVAHAVLG----KCPKPRMADYLPFKDSDGN- 55
Query: 86 VLDEGLCLWFPR-HGKCGVSVIRVSG 110
VLD+G+ L+F H G V+ + G
Sbjct: 56 VLDQGIALYFKAPHSFTGEDVLELQG 81
>gi|417853926|ref|ZP_12499260.1| tRNA modification GTPase TrmE [Pasteurella multocida subsp.
multocida str. Anand1_goat]
gi|338218784|gb|EGP04529.1| tRNA modification GTPase TrmE [Pasteurella multocida subsp.
multocida str. Anand1_goat]
Length = 452
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++RVSGP + ++ K KPR A D V LD+G+ L+F
Sbjct: 13 GRGGIGILRVSGPKAVEVAHAVLG----KCPKPRMADYLPFKDSDGNV-LDQGIALYFKA 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ +L + +L GLR A PGEFS++AF N+KLDL Q EA+
Sbjct: 68 PHSFTGEDVLELQGHGGQVVLDLLLKRILQLEGLRLARPGEFSEQAFLNDKLDLAQAEAI 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G ++ ++ VEA IDF ++EI D + +
Sbjct: 128 ADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEEI--DFLAD- 184
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE H+ ++II L+ VR
Sbjct: 185 ---------GKIEAHL-------------------------------NDIITQ--LDHVR 202
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S+ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 203 SEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 247
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T ++
Sbjct: 248 TTRDVLREHIHIDGMPLHIIDTAGLREATDEV 279
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP + ++ K PKPR A D
Sbjct: 1 MKETIVAQATAPGRGGIGILRVSGPKAVEVAHAVLG----KCPKPRMADYLPFKDSDGN- 55
Query: 86 VLDEGLCLWFPR-HGKCGVSVIRVSG 110
VLD+G+ L+F H G V+ + G
Sbjct: 56 VLDQGIALYFKAPHSFTGEDVLELQG 81
>gi|262282851|ref|ZP_06060618.1| tRNA modification GTPase mnmE [Streptococcus sp. 2_1_36FAA]
gi|262261103|gb|EEY79802.1| tRNA modification GTPase mnmE [Streptococcus sp. 2_1_36FAA]
Length = 457
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 177/339 (52%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + +SK +L +IVDP ++ +LDE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKI--FKGKDLSKVESHTLNYGHIVDPQNQEILDEVMVGAM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL + + G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 RSPKTFTREDIIEINTHGGIAVTNEILQLVIR-EGARMAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL +LA VE ID+ E + +E+
Sbjct: 134 AVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNIDYPEYDDVEEMTT 193
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
+R + A EA + N+LNT
Sbjct: 194 QLMREKT-------------------------------AEFEALL---------SNLLNT 213
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
R G I +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 214 AR------RGKI-------------LREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 255 EGTTRDVIEEYVNIKGVPLKLIDTAGIR-ETDDLVEQIG 292
>gi|14195273|sp|Q9CLQ1.1|MNME_PASMU RecName: Full=tRNA modification GTPase MnmE
Length = 452
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++RVSGP + ++ K KPR A D V LD+G+ L+F
Sbjct: 13 GRGGIGILRVSGPKAVEVAHTVLG----KCPKPRMADYLPFKDSDGNV-LDQGIALYFKA 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ +L + +L GLR A PGEFS++AF N+KLDL Q EA+
Sbjct: 68 PHSFTGEDVLELQGHGGQVVLDLLLKRILQLEGLRLARPGEFSEQAFLNDKLDLAQAEAI 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G ++ ++ VEA IDF ++EI D + +
Sbjct: 128 ADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEEI--DFLAD- 184
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE H+ ++II L+ VR
Sbjct: 185 ---------GKIEAHL-------------------------------NDIITQ--LDHVR 202
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S+ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 203 SEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 247
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T ++
Sbjct: 248 TTRDVLREHIHIDGMPLHIIDTAGLREATDEV 279
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP + ++ K PKPR A D
Sbjct: 1 MKETIVAQATAPGRGGIGILRVSGPKAVEVAHTVLG----KCPKPRMADYLPFKDSDGN- 55
Query: 86 VLDEGLCLWFPR-HGKCGVSVIRVSG 110
VLD+G+ L+F H G V+ + G
Sbjct: 56 VLDQGIALYFKAPHSFTGEDVLELQG 81
>gi|386586560|ref|YP_006082962.1| tRNA modification GTPase TrmE [Streptococcus suis D12]
gi|353738706|gb|AER19714.1| tRNA modification GTPase TrmE [Streptococcus suis D12]
Length = 457
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 175/338 (51%), Gaps = 63/338 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYA-SLRNIVDPVSEVVLDEGLCLWFP 157
G+ + ++R+SG D A+ S + P ++ + +I+DP + VLDE +
Sbjct: 17 GEGAIGIVRLSGTDAF-AIASKVFKGKDLATVPSHSLNYGHIIDPATGQVLDEVMLGVMR 75
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P +FT ED E HG IAV N IL L + G R AEPGEF+KRAF N ++DLTQ EA
Sbjct: 76 SPKTFTREDVIEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTKRAFLNGRVDLTQAEA 134
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ D+I+A+T+ A+ Q+ G+L QL ++ RQ ILN
Sbjct: 135 VMDVIRAKTDKAMHNAVRQLDGSLSQLINDTRQ-----------------------EILN 171
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
T LA VE ID+ E + +E+ V
Sbjct: 172 T-----------------------------------LAQVEVNIDYPEYDDVEEATTELV 196
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
R + +Q +E + +++ G +R GI + I+G PNVGKSSL+N L +++ +IVT I
Sbjct: 197 REKTLQFQALLENLLRTASR-GKILREGIATAIIGRPNVGKSSLLNNLLREEKAIVTDIA 255
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 256 GTTRDVIEEYVNIKGVPLKLIDTAGIR-ETDDIVEKIG 292
>gi|417090142|ref|ZP_11955812.1| tRNA modification GTPase TrmE [Streptococcus suis R61]
gi|353533722|gb|EHC03367.1| tRNA modification GTPase TrmE [Streptococcus suis R61]
Length = 457
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 174/338 (51%), Gaps = 63/338 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYA-SLRNIVDPVSEVVLDEGLCLWFP 157
G+ + ++R+SG D A+ S + P ++ + +I+DP + VLDE +
Sbjct: 17 GEGAIGIVRLSGTDAF-AIASKVFKGKDLATVPSHSLNYGHIIDPATGQVLDEVMIGAMR 75
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P +FT ED E HG IAV N IL L + G R AEPGEF+KRAF N ++DLTQ EA
Sbjct: 76 SPKTFTREDVIEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTKRAFLNGRVDLTQAEA 134
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ D+I+A+T+ A+ Q+ G+L QL ++ RQ ILN
Sbjct: 135 VMDVIRAKTDKAMHNAVRQLDGSLSQLINDTRQ-----------------------EILN 171
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
T LA VE ID+ E + +E+ V
Sbjct: 172 T-----------------------------------LAQVEVNIDYPEYDDVEEATTELV 196
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
R + +Q +E + + + G +R GI + I+G PNVGKSSL+N L +++ +IVT I
Sbjct: 197 REKTLQFQALLENLLRTARR-GKILREGIATAIIGRPNVGKSSLLNNLLREEKAIVTDIA 255
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 256 GTTRDVIEEYVNIKGVPLKLIDTAGIR-ETDDIVEKIG 292
>gi|378775790|ref|YP_005178033.1| tRNA modification GTPase MnmE [Pasteurella multocida 36950]
gi|383311879|ref|YP_005364689.1| tRNA modification GTPase TrmE [Pasteurella multocida subsp.
multocida str. HN06]
gi|386835832|ref|YP_006241152.1| tRNA modification GTPase TrmE [Pasteurella multocida subsp.
multocida str. 3480]
gi|421263913|ref|ZP_15714925.1| tRNA modification GTPase TrmE [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|356598338|gb|AET17064.1| tRNA modification GTPase MnmE [Pasteurella multocida 36950]
gi|380873151|gb|AFF25518.1| tRNA modification GTPase TrmE [Pasteurella multocida subsp.
multocida str. HN06]
gi|385202538|gb|AFI47393.1| tRNA modification GTPase TrmE [Pasteurella multocida subsp.
multocida str. 3480]
gi|401688924|gb|EJS84455.1| tRNA modification GTPase TrmE [Pasteurella multocida subsp.
multocida str. P52VAC]
Length = 452
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++RVSGP + ++ K KPR A D V LD+G+ L+F
Sbjct: 13 GRGGIGILRVSGPKAVEVAHAVLG----KCPKPRMADYLPFKDSDGNV-LDQGIALYFKA 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ +L + +L GLR A PGEFS++AF N+KLDL Q EA+
Sbjct: 68 PHSFTGEDVLELQGHGGQVVLDLLLKRILQLEGLRLARPGEFSEQAFLNDKLDLAQAEAI 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G ++ ++ VEA IDF ++EI D + +
Sbjct: 128 ADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEEI--DFLAD- 184
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE H+ ++II L+ VR
Sbjct: 185 ---------GKIEAHL-------------------------------NDIITQ--LDHVR 202
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S+ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 203 SEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 247
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T ++
Sbjct: 248 TTRDVLREHIHIDGMPLHIIDTAGLREATDEV 279
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP + ++ K PKPR A D
Sbjct: 1 MKETIVAQATAPGRGGIGILRVSGPKAVEVAHAVLG----KCPKPRMADYLPFKDSDGN- 55
Query: 86 VLDEGLCLWFPR-HGKCGVSVIRVSG 110
VLD+G+ L+F H G V+ + G
Sbjct: 56 VLDQGIALYFKAPHSFTGEDVLELQG 81
>gi|209693636|ref|YP_002261564.1| tRNA modification GTPase TrmE [Aliivibrio salmonicida LFI1238]
gi|208007587|emb|CAQ77687.1| probable tRNA modification GTPase [Aliivibrio salmonicida LFI1238]
Length = 455
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 122/336 (36%), Positives = 175/336 (52%), Gaps = 73/336 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP + +A K KPRYA D + + LD+G+ L+FP
Sbjct: 16 GRGGVGIIRVSGPKA----QQVALEVVGKTLKPRYAEYTPFKDD-NGLELDQGIALYFPN 70
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ ++ + K+ G+R A PGEFS+RAF N+K+DL Q EA+
Sbjct: 71 PHSFTGEDVLELQGHGGPVVMDMLIKRILKIEGIRTARPGEFSERAFLNDKMDLAQAEAI 130
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESL----ASVEAYIDFSEDEIIEDN 274
DLI A +E + AL+ ++G ++S ++ESL VEA IDF E+EI D
Sbjct: 131 ADLIDASSEEAAKSALNSLQG----VFSRKINTLVESLIYLRIYVEAAIDFPEEEI--DF 184
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
+ + ++ ++ +I DN L
Sbjct: 185 LADG------------------------KVSGDLQGII------------------DN-L 201
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
N VR + Q G+I +R G+K VI G PN GKSSL+N L K +IVT
Sbjct: 202 NAVRQEANQ--GAI-------------MREGMKVVIAGRPNAGKSSLLNALSGKDSAIVT 246
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 247 DIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 282
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + +A K KPRYA D + + L
Sbjct: 6 DTIVAQATAPGRGGVGIIRVSGPKA----QQVALEVVGKTLKPRYAEYTPFKDD-NGLEL 60
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 61 DQGIALYFPNPHSFTGEDVLELQG 84
>gi|253991869|ref|YP_003043225.1| trna modification gtpase trme [Photorhabdus asymbiotica]
gi|253783319|emb|CAQ86484.1| trna modification gtpase trme [Photorhabdus asymbiotica]
Length = 454
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 117/338 (34%), Positives = 161/338 (47%), Gaps = 77/338 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSGP + + K+ KPRYA D V VLD+G+ ++FP
Sbjct: 15 GRGGVGILRVSGPKAAQVAEVVLG----KLPKPRYADYLPFRD-VDNRVLDQGIAIYFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIANPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E
Sbjct: 130 ADLIDASSE-------------------------------------------------QA 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNI----- 333
RS + L G+ + + +R +++ I E IDF D IE N+
Sbjct: 141 ARSAMNSLQGAFSTQVHQMVEALTHLRIYVEAAIDFPDEE--IDFLSDGKIEANLDNVIA 198
Query: 334 -LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
L+ VRSQ Q G +R G+K VI G PN GKSSL+N L + +I
Sbjct: 199 KLDRVRSQARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGRDAAI 243
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
VT I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 244 VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++RVSGP + + K+PKPRYA D V VL
Sbjct: 5 DTIVAQATPPGRGGVGILRVSGPKAAQVAEVVLG----KLPKPRYADYLPFRD-VDNRVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ ++FP + G V+ + GP L+ LK + P +++ P S R ++
Sbjct: 60 DQGIAIYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIANPGEFSERAFLN 118
>gi|395783704|ref|ZP_10463553.1| tRNA modification GTPase mnmE [Bartonella melophagi K-2C]
gi|395425826|gb|EJF91986.1| tRNA modification GTPase mnmE [Bartonella melophagi K-2C]
Length = 435
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 116/330 (35%), Positives = 169/330 (51%), Gaps = 66/330 (20%)
Query: 102 GVSVIRVSGPDTLNALKSM-ACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+V+R+SGPD +N +K++ C P K R+ N++ LD L ++FP P+
Sbjct: 15 GVAVVRLSGPDVVNIVKTLCGCLP-----KARFMHYGNLI-ARDGSFLDSALTVFFPGPH 68
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDC EF +HG AV+N L L+ P R AE GEFS+RAF K+DL Q EAL D
Sbjct: 69 SFTGEDCAEFHLHGGKAVVNRFLDELSGFPECRIAEAGEFSRRAFTEGKIDLIQAEALVD 128
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI+AETE QR+ A+ G+L +LY WR ++ + A +EA IDFS+++ I D+I + +
Sbjct: 129 LIEAETESQRRLAVIGTSGHLTKLYRSWRDELITARALIEAEIDFSDEDDIPDSISDKIW 188
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
+ +L S+ +HI + + +R G++ VI A N+ +S
Sbjct: 189 KNMKKLSCSLCEHIAAGERANI-LRDGLRVVIVGAP------------------NSGKSS 229
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
++ + + G P ++IVT GTT
Sbjct: 230 II-------------------------NRLAGRP---------------VAIVTEEAGTT 249
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
RD +E L +GG PV L DTAG R T S +
Sbjct: 250 RDALEIRLILGGLPVFLTDTAGFRKTESKV 279
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 7/70 (10%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSM-ACYPDQKVPKPRYASLRNIVDPVSKVV 86
+TIFALSSG GV+V+R+SGPD +N +K++ C +PK R+ N++
Sbjct: 2 DTIFALSSGLLPSGVAVVRLSGPDVVNIVKTLCGC-----LPKARFMHYGNLI-ARDGSF 55
Query: 87 LDEGLCLWFP 96
LD L ++FP
Sbjct: 56 LDSALTVFFP 65
>gi|401683031|ref|ZP_10814920.1| tRNA modification GTPase TrmE [Streptococcus sp. AS14]
gi|400183713|gb|EJO17964.1| tRNA modification GTPase TrmE [Streptococcus sp. AS14]
Length = 457
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 175/339 (51%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + +SK +L +IVDP ++ +LDE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKI--FKGKNLSKVESHTLNYGHIVDPQNQEILDEVMVGAM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 RSPKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARMAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL +LA VE ID+ E + +E+
Sbjct: 134 AVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNIDYPEYDDVEEMTT 193
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
+R + + E + N+LNT
Sbjct: 194 QLMREKTAEF----------------------------------------ETLLSNLLNT 213
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
R G I +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 214 AR------RGKI-------------LREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 255 EGTTRDVIEEYVNIKGVPLKLIDTAGIR-ETDDLVEQIG 292
>gi|354599881|ref|ZP_09017898.1| tRNA modification GTPase mnmE [Brenneria sp. EniD312]
gi|353677816|gb|EHD23849.1| tRNA modification GTPase mnmE [Brenneria sp. EniD312]
Length = 454
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 167/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG A ++A K+ +PR A D LD+G+ LWFP
Sbjct: 15 GRGGVGILRVSG----RAASAVAQAVLGKLPRPRRADYLPFRDS-DGTPLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LP +R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLQRILALPEVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSSRINHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE+ + D ++ D L+ VR
Sbjct: 186 --------DGKIERQL-------------------------------DNVMAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEAHQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDANDEV 281
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++RVSG A ++A K+P+PR A D L
Sbjct: 5 DTIVAQATPPGRGGVGILRVSG----RAASAVAQAVLGKLPRPRRADYLPFRDS-DGTPL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ L+ + P+ ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLQRILALPEVRIARPGEFSERAFLN 118
>gi|121703576|ref|XP_001270052.1| mitochondrial GTPase (Mss1), putative [Aspergillus clavatus NRRL 1]
gi|119398196|gb|EAW08626.1| mitochondrial GTPase (Mss1), putative [Aspergillus clavatus NRRL 1]
Length = 572
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 114/343 (33%), Positives = 181/343 (52%), Gaps = 74/343 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPV----SEVVLDEG-LC 153
G+ ++V+R+SGP + ++ C P+ ++ +PR A++R + DP + VLD G L
Sbjct: 45 GRAAIAVVRLSGPACVQVYHAL-C-PNARLPRPRIAAVRTVYDPTQKPSANTVLDTGALV 102
Query: 154 LWFPKPNSFTGEDCCEFQVHGSIAVINAILGAL--TKLPG---LRPAEPGEFSKRAFFNN 208
L+FP P + TGED EF +HG A++ ++L A+ T P +R AEPGEF++RAF NN
Sbjct: 103 LYFPGPKTVTGEDVLEFHLHGGPAIVRSVLAAIARTSRPDESLVRYAEPGEFTRRAFMNN 162
Query: 209 KLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSED 268
+L L Q EALGD + A+TE QR+ A+ L + Y W
Sbjct: 163 RLGLPQIEALGDTLTADTEQQRRLAVRGASDALSKRYELW-------------------- 202
Query: 269 EIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI 328
R Q++ G +E A IDFSED+
Sbjct: 203 -----------RQQLLYARGELE---------------------------ALIDFSEDQH 224
Query: 329 IEDN---ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFL 385
+++ ++++V QV L ++ H+E ++K G +R+GIK ++G PN GKSSL+N +
Sbjct: 225 FDESPVELISSVAVQVRALQAQLKLHVENASK-GELLRNGIKIALLGAPNAGKSSLLNRV 283
Query: 386 CQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428
K+ +IV++ GTTRD+++ +D+GG+ L D AG+R+ S
Sbjct: 284 VGKEAAIVSTEEGTTRDIVDVGVDVGGWYCKLGDMAGIRSENS 326
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 151/299 (50%), Gaps = 77/299 (25%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
L +TI+ALS+ G+ ++V+R+SGP + ++ C P+ ++P+PR A++R + DP
Sbjct: 31 LETDSTIYALSTAPGRAAIAVVRLSGPACVQVYHAL-C-PNARLPRPRIAAVRTVYDPTQ 88
Query: 84 K----VVLDEG-LCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRN 138
K VLD G L L+FP GP T+
Sbjct: 89 KPSANTVLDTGALVLYFP-------------GPKTV------------------------ 111
Query: 139 IVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGAL--TKLPG---LR 193
TGED EF +HG A++ ++L A+ T P +R
Sbjct: 112 ------------------------TGEDVLEFHLHGGPAIVRSVLAAIARTSRPDESLVR 147
Query: 194 PAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLIL 253
AEPGEF++RAF NN+L L Q EALGD + A+TE QR+ A+ L + Y WRQ +L
Sbjct: 148 YAEPGEFTRRAFMNNRLGLPQIEALGDTLTADTEQQRRLAVRGASDALSKRYELWRQQLL 207
Query: 254 ESLASVEAYIDFSEDEIIEDN---ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK 309
+ +EA IDFSED+ +++ ++++V QV L ++ H+E ++K G +R+GIK
Sbjct: 208 YARGELEALIDFSEDQHFDESPVELISSVAVQVRALQAQLKLHVENASK-GELLRNGIK 265
>gi|222056913|ref|YP_002539275.1| tRNA modification GTPase TrmE [Geobacter daltonii FRC-32]
gi|221566202|gb|ACM22174.1| tRNA modification GTPase TrmE [Geobacter daltonii FRC-32]
Length = 455
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 127/344 (36%), Positives = 178/344 (51%), Gaps = 76/344 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRN-------IVDPVSEVVLDEG 151
G+ G+S+IR+SGPD L+ D+ + R L++ I DP S +LDE
Sbjct: 15 GEGGISIIRISGPDCLS-------IADRIFRRSRDGGLKSHRFYYGVIFDPDSAAILDEA 67
Query: 152 LCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLD 211
+ + PNSFT ED E HG V+ IL AL G R A+PGEF+KRAF N ++D
Sbjct: 68 MVVLMRGPNSFTREDVLELHCHGGYLVVRRIL-ALVLRQGARLADPGEFTKRAFLNGRID 126
Query: 212 LTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEII 271
L Q EA+ D+I +++E+ A HQ +G L + + ++ +L SLA +EA+IDF E++I
Sbjct: 127 LVQAEAIMDIIHSKSEMSLNLAQHQREGLLSRQLFQLKEYLLSSLAFLEAFIDFPEEDI- 185
Query: 272 EDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIED 331
S ++HI G I S + + L S FSE II +
Sbjct: 186 ---------------DVSAKEHI------GQNIDSSLLMLDELLS-----GFSEGRIIRE 219
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
GV + VI G+PNVGKSSL+N L Q++ +
Sbjct: 220 ---------------------------GVSV------VIAGKPNVGKSSLLNALLQEKRA 246
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IVT+IPGTTRD+IE+ + I G PV LLDTAG+R + D +E EG
Sbjct: 247 IVTAIPGTTRDLIEEQMTINGLPVKLLDTAGIR-ESDDHVEKEG 289
>gi|253755917|ref|YP_003029057.1| tRNA modification GTPase TrmE [Streptococcus suis BM407]
gi|403061919|ref|YP_006650135.1| tRNA modification GTPase TrmE [Streptococcus suis S735]
gi|251818381|emb|CAZ56209.1| tRNA modification GTPase TrmE [Streptococcus suis BM407]
gi|402809245|gb|AFR00737.1| tRNA modification GTPase TrmE [Streptococcus suis S735]
Length = 457
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 118/338 (34%), Positives = 174/338 (51%), Gaps = 63/338 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYA-SLRNIVDPVSEVVLDEGLCLWFP 157
G+ + ++R+SG D A+ S + P ++ + +++DP + VLDE +
Sbjct: 17 GEGAIGIVRLSGTDAF-AIASTVFKGKDLATVPSHSLNYGHVIDPATGQVLDEVMIGAMR 75
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P +FT ED E HG IAV N IL L + G R AEPGEF+KRAF N ++DLTQ EA
Sbjct: 76 SPKTFTREDVIEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTKRAFLNGRVDLTQAEA 134
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ D+I+A+T+ A+ Q+ G+L QL ++ RQ ILN
Sbjct: 135 VMDVIRAKTDKAMHNAVRQLDGSLSQLINDTRQ-----------------------EILN 171
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
T LA VE ID+ E + +E+ V
Sbjct: 172 T-----------------------------------LAQVEVNIDYPEYDDVEEATTELV 196
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
R + +Q +E + + + G +R GI + I+G PNVGKSSL+N L +++ +IVT I
Sbjct: 197 REKTLQFQALLENLLRTARR-GKILREGIATAIIGRPNVGKSSLLNNLLREEKAIVTDIA 255
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 256 GTTRDVIEEYVNIKGVPLKLIDTAGIR-ETDDIVEKIG 292
>gi|323351499|ref|ZP_08087153.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
VMC66]
gi|322121985|gb|EFX93711.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
VMC66]
Length = 457
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 176/339 (51%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + +SK +L +IVDP ++ +LDE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKI--FKGKNLSKVESHTLNYGHIVDPQNQEILDEVMLGAM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 RSPKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARMAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL +LA VE ID+ E + +E+
Sbjct: 134 AVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNIDYPEYDDVEEMTT 193
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
+R + +E E + N+LNT
Sbjct: 194 QLMREKT----------------------------------------AEFETLLSNLLNT 213
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
R G I +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 214 AR------RGKI-------------LREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 255 EGTTRDVIEEYVNIKGVPLKLIDTAGIR-ETDDLVEQIG 292
>gi|423713333|ref|ZP_17687593.1| tRNA modification GTPase mnmE [Bartonella vinsonii subsp. arupensis
OK-94-513]
gi|395423374|gb|EJF89569.1| tRNA modification GTPase mnmE [Bartonella vinsonii subsp. arupensis
OK-94-513]
Length = 435
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 114/329 (34%), Positives = 163/329 (49%), Gaps = 64/329 (19%)
Query: 102 GVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNS 161
GV+VIR+SGP +N +K++ ++ K R+ N+ LD L ++FP P+S
Sbjct: 15 GVAVIRLSGPHVINVVKTLC----GRLPKARFMHYGNLT-ARDGSFLDSALTVFFPAPHS 69
Query: 162 FTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDL 221
FTGEDC EF +HG AV+N L L+ G R AE GEFS+RAF KLDL Q E L DL
Sbjct: 70 FTGEDCAEFHLHGGKAVVNRFLDELSTFSGCRIAEAGEFSRRAFMEGKLDLVQAEGLADL 129
Query: 222 IQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRS 281
I+AETE QR+ A+ G L LYS+WR ++++ A +EA +DF ++ + ++I + V
Sbjct: 130 IEAETESQRRLAIMGTSGRLTTLYSDWRHKLMKARAFIEAELDFVDEADVPNSISDKVWK 189
Query: 282 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQV 341
+ L S+++HI+ + + +R G+K VI A
Sbjct: 190 DMEDLCTSLQEHIDEGERASI-LRDGLKIVIAGAPNSG---------------------- 226
Query: 342 VQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTR 401
+S I + + G P ISIV+ GTTR
Sbjct: 227 ---------------------KSSIMNRLAGRP---------------ISIVSEEEGTTR 250
Query: 402 DVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
D +E L +GG PV L DTAG R T + I
Sbjct: 251 DALEMRLILGGLPVFLTDTAGFRETENKI 279
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFA+SSG GV+VIR+SGP +N +K++ ++PK R+ N+ L
Sbjct: 2 DTIFAVSSGLLPSGVAVIRLSGPHVINVVKTLC----GRLPKARFMHYGNLT-ARDGSFL 56
Query: 88 DEGLCLWFP 96
D L ++FP
Sbjct: 57 DSALTVFFP 65
>gi|71005678|ref|XP_757505.1| hypothetical protein UM01358.1 [Ustilago maydis 521]
gi|46096628|gb|EAK81861.1| hypothetical protein UM01358.1 [Ustilago maydis 521]
Length = 531
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 172/332 (51%), Gaps = 46/332 (13%)
Query: 99 GKCGVSVIRVSGPDT----LNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGL-C 153
G+ GV++IR+SGP T L ++ P ++ LRN+ P + +LD G
Sbjct: 92 GRAGVAMIRISGPLTSDVYLALCRTSHSQPYTRLPPSHKLVLRNLHHPHTFELLDAGAGI 151
Query: 154 LWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG-LRPAEPGEFSKRAFFNNKLDL 212
+ FP +S+TGE+ E +HG +A I+ +L AL G +R AEPGEF++RAF N +LDL
Sbjct: 152 IHFPAGSSYTGEESLELHIHGGLATISGVLDALVVFGGRMRIAEPGEFTRRAFENGRLDL 211
Query: 213 TQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIE 272
EAL L+ AET +QR+ AL G + + R+++L ++A VEA IDFS++ +E
Sbjct: 212 ASAEALHGLVLAETAVQRRVALQGTSGLQTERFERIREVLLSAMAMVEALIDFSDEGGVE 271
Query: 273 DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDN 332
+ R V L +R GI S D + D
Sbjct: 272 EGTWKVARESVDAL------------AVMLRTELGISST--------GTDSNSDRD---- 307
Query: 333 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
N ++ Q +HI G + +GI + G PN GKSSL+N L + +I
Sbjct: 308 --NKIKRQ--------PRHI------GEILSTGIHLALYGPPNAGKSSLLNRLADRNAAI 351
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424
V+ IPGTTRDV++ HLD+ GY VI+ DTAG+R
Sbjct: 352 VSDIPGTTRDVLQVHLDLAGYKVIVYDTAGMR 383
>gi|402848266|ref|ZP_10896530.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Rhodovulum sp. PH10]
gi|402501420|gb|EJW13068.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Rhodovulum sp. PH10]
Length = 451
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 116/335 (34%), Positives = 166/335 (49%), Gaps = 64/335 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
G++V+RVSG AL+ + + + +P + +D+GL LWFP P
Sbjct: 25 AGIAVVRVSGALAREALRLLVGRVPAPRVA----VVVMVKNPETSEPIDQGLALWFPGPA 80
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
S TGED E VHG AV+ AIL +L ++ G R AEPGEF++RAF N KLDLT+ E L D
Sbjct: 81 SATGEDVAELHVHGGRAVVGAILASLGRISGCRLAEPGEFTRRAFDNGKLDLTRVEGLAD 140
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI A+TE QR++AL Q+ G L +WR+ ++E+ A VEA +DFS++ + D++ R
Sbjct: 141 LIAADTEAQRRQALRQLTGLLGDRAEDWRKTLIEAQALVEASLDFSDEGDVPDDLATPAR 200
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
++ L I + + G R+R G+ I + + ++LN +
Sbjct: 201 ARAKALREEIAGVLADGGR-GERLRDGLTVAIA----------GPPNVGKSSLLNRI--- 246
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
VR + I S I G TT
Sbjct: 247 -------------------VRREAAIVSPIAG--------------------------TT 261
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
RDV+E HLD+GG+PV LLDTAGLR + D +E EG
Sbjct: 262 RDVVEVHLDLGGWPVTLLDTAGLR-DSDDPVEQEG 295
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 19 RRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNI 78
R + + +TIFALSSG G++V+RVSG AL+ + A + +
Sbjct: 4 RSPAMTTVSDTIFALSSGRPPAGIAVVRVSGALAREALRLLVGRVPAPR----VAVVVMV 59
Query: 79 VDPVSKVVLDEGLCLWFP 96
+P + +D+GL LWFP
Sbjct: 60 KNPETSEPIDQGLALWFP 77
>gi|422826418|ref|ZP_16874597.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK678]
gi|324994536|gb|EGC26449.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK678]
Length = 457
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 175/339 (51%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + +SK +L +IVDP ++ +LDE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKI--FKGKNLSKVESHTLNYGHIVDPQNQEILDEVMLGAM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 RSPKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARMAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL +LA VE ID+ E + +E+
Sbjct: 134 AVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNIDYPEYDDVEEMTT 193
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
+R + + E + N+LNT
Sbjct: 194 QLMREKTAEF----------------------------------------ETLLSNLLNT 213
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
R G I +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 214 AR------RGKI-------------LREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 255 EGTTRDVIEEYVNIKGVPLKLIDTAGIR-ETDDLVEQIG 292
>gi|407768091|ref|ZP_11115470.1| tRNA modification GTPase TrmE [Thalassospira xiamenensis M-5 = DSM
17429]
gi|407288804|gb|EKF14281.1| tRNA modification GTPase TrmE [Thalassospira xiamenensis M-5 = DSM
17429]
Length = 469
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 132/220 (60%), Gaps = 10/220 (4%)
Query: 99 GKCGVSVIRVSGP---DTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLW 155
G+ GV+VIR+SGP TL AL P KPR+A I DP + LD+ + ++
Sbjct: 28 GRAGVAVIRLSGPMAGATLCALLGRDSLP-----KPRHAIYAPIHDPKTNERLDDAVAIY 82
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
F P SFTGED E HG AVI+ +L L PGLR AEPGE+++RAF N K+DLT
Sbjct: 83 FAGPASFTGEDVVELHTHGGRAVIDGVLDCLAARPGLRIAEPGEYTRRAFENGKMDLTAA 142
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
E + DLI AET QR++A+ QM G L LY WR ++++LA +EA IDF DE + I
Sbjct: 143 EGIADLIDAETAAQRRQAVRQMAGELGALYENWRARLMKALAYIEADIDFP-DEDLPGGI 201
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA 315
+ VR + +HG ++KH+ N+ G R+R G + VI A
Sbjct: 202 VPVVRGDLSSVHGEMDKHLA-DNRRGERLREGFQIVILGA 240
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 87/123 (70%), Gaps = 3/123 (2%)
Query: 313 CLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVG 372
LA +EA IDF DE + I+ VR + +HG ++KH+ N+ G R+R G + VI+G
Sbjct: 182 ALAYIEADIDFP-DEDLPGGIVPVVRGDLSSVHGEMDKHLA-DNRRGERLREGFQIVILG 239
Query: 373 EPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIE 432
PN GKSSL+N L +++ +IV+ I GTTRD+IE HLD+GG+PV ++DTAGLR + D+IE
Sbjct: 240 APNAGKSSLLNRLARREAAIVSEIAGTTRDMIEVHLDLGGFPVTMVDTAGLR-ESGDVIE 298
Query: 433 TEG 435
TEG
Sbjct: 299 TEG 301
>gi|261868617|ref|YP_003256539.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|415769766|ref|ZP_11484437.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|416108313|ref|ZP_11590988.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|444346742|ref|ZP_21154705.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|261413949|gb|ACX83320.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348004404|gb|EGY44914.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|348657244|gb|EGY74839.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|443541298|gb|ELT51740.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
Length = 451
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 115/332 (34%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++RVSGP + +++ K KPR A + + VLD+G+ L+F
Sbjct: 13 GRGGIGILRVSGPKAIEVAQAVLG----KCPKPRMADYLSFKE-ADGTVLDQGIALYFKG 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L + ++ G+R A PGEFS++AF N+KLDL Q EA+
Sbjct: 68 PNSFTGEDVLELQGHGGQVVLDLLLKRILRIEGIRLARPGEFSEQAFLNDKLDLAQAEAI 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G ++ ++ VEA IDF ++EI D + +
Sbjct: 128 ADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEEI--DFLAD- 184
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE H+ ++II L+ VR
Sbjct: 185 ---------GKIEGHL-------------------------------NDIIAQ--LDKVR 202
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 203 AEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNTLAGREAAIVTDIAG 247
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ + G P+ ++DTAGLR T ++
Sbjct: 248 TTRDVLREHIHLDGMPLHIIDTAGLRDATDEV 279
Score = 45.1 bits (105), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP + +++ K PKPR A + +
Sbjct: 1 MKETIVAQATAPGRGGIGILRVSGPKAIEVAQAVLG----KCPKPRMADYLSFKE-ADGT 55
Query: 86 VLDEGLCLWF 95
VLD+G+ L+F
Sbjct: 56 VLDQGIALYF 65
>gi|334139610|ref|YP_004532804.1| tRNA modification GTPase TrmE [Novosphingobium sp. PP1Y]
gi|333937628|emb|CCA90986.1| tRNA modification GTPase TrmE [Novosphingobium sp. PP1Y]
Length = 425
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 109/336 (32%), Positives = 161/336 (47%), Gaps = 74/336 (22%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
+ V+RVSGP+ A+ ++A + PR AS R + +LD L LWFP P+
Sbjct: 15 AAIGVLRVSGPEAGAAMTALAG----SIPSPRRASYRKLRGG-DGAILDHALVLWFPGPD 69
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
+ TGED EF +HG AV++A+ AL ++P LR A PGEF++RAF N ++DL + E L D
Sbjct: 70 TATGEDLAEFHLHGGRAVVSAVESALAQMPKLRRATPGEFTRRAFANGRIDLAEAEGLAD 129
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
L+ AETELQR R
Sbjct: 130 LLSAETELQR-------------------------------------------------R 140
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
S + G+ + +E+ + + A+VEA +DF +++ + D +
Sbjct: 141 SALAMADGAFSRQVEIWRD---------RVLAASAAVEAVLDFGDEDDVADLPEDF---- 187
Query: 341 VVQLHGSIEKHIELSNKC----GVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
L G + H+ELS R++ G + V+ G PN GKS+L N L + + +I +
Sbjct: 188 ---LKGLAKFHVELSQWLERPRAERLKDGFRVVLAGPPNAGKSTLFNALVEDEAAITAPL 244
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIE 432
GTTRDV+ + + IGG P + DTAGLR T D IE
Sbjct: 245 AGTTRDVLTRAVAIGGMPFVFADTAGLRDETGDEIE 280
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 133/292 (45%), Gaps = 77/292 (26%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ +TIFALSSG + V+RVSGP+ A+ ++A +P PR AS R +
Sbjct: 1 MTDTIFALSSGSPPAAIGVLRVSGPEAGAAMTALAG----SIPSPRRASYRKLRGG-DGA 55
Query: 86 VLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSE 145
+LD L LWFP GPDT
Sbjct: 56 ILDHALVLWFP-------------GPDTA------------------------------- 71
Query: 146 VVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAF 205
TGED EF +HG AV++A+ AL ++P LR A PGEF++RAF
Sbjct: 72 -----------------TGEDLAEFHLHGGRAVVSAVESALAQMPKLRRATPGEFTRRAF 114
Query: 206 FNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDF 265
N ++DL + E L DL+ AETELQR+ AL G + WR +L + A+VEA +DF
Sbjct: 115 ANGRIDLAEAEGLADLLSAETELQRRSALAMADGAFSRQVEIWRDRVLAASAAVEAVLDF 174
Query: 266 SEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKC----GVRIRSGIKSVIC 313
+++ + D + L G + H+ELS R++ G + V+
Sbjct: 175 GDEDDVADLPEDF-------LKGLAKFHVELSQWLERPRAERLKDGFRVVLA 219
>gi|146337363|ref|YP_001202411.1| tRNA modification GTPase TrmE [Bradyrhizobium sp. ORS 278]
gi|205829156|sp|A4YJT5.1|MNME_BRASO RecName: Full=tRNA modification GTPase MnmE
gi|146190169|emb|CAL74161.1| putative tRNA modification GTPase (trmE) [Bradyrhizobium sp. ORS
278]
Length = 444
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 116/336 (34%), Positives = 170/336 (50%), Gaps = 67/336 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
++++R+SGP AL+ +A K+ PR + + DP E + D+ + LWFP P
Sbjct: 18 SAIAIVRLSGPHAGAALQMLAG----KMPAPRLVTRALLRDPQGEPI-DDAVVLWFPAPA 72
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
S TGE+ E +HGS AVI + G L++ P LRPAEPGEF++RAF N KLDLT+ E L
Sbjct: 73 SATGENVVELHIHGSRAVIATLFGVLSETPELRPAEPGEFTRRAFENGKLDLTEAEGL-- 130
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
D++I + R
Sbjct: 131 -----------------------------------------------DDLIHADTDRQRR 143
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLAS-VEAYIDFSEDEIIEDNILNTVRS 339
+ QL G + G ++R + +I A+ +EA IDFS++ + +L S
Sbjct: 144 QALRQLKGLL----------GDKVRRWREQIIEAAALIEAGIDFSDEGDVPAELLAPALS 193
Query: 340 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGT 399
+V QL IE + + R+R G+ VI G PN GKS+LMN L +++++IV+ GT
Sbjct: 194 RVQQLLLEIEAVLAAQGRA-ERLRDGLTVVIAGPPNAGKSTLMNQLARREVAIVSPQAGT 252
Query: 400 TRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TRD+IE LD+ GYPV ++DTAG+R T D +E EG
Sbjct: 253 TRDLIEVQLDLDGYPVTVIDTAGIR-ETDDPVEQEG 287
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 137/286 (47%), Gaps = 67/286 (23%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TIFALSSG ++++R+SGP AL+ +A K+P PR + + DP + +
Sbjct: 6 QTIFALSSGRLPSAIAIVRLSGPHAGAALQMLAG----KMPAPRLVTRALLRDPQGEPI- 60
Query: 88 DEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVV 147
D+ + LWFP P A+ N+V
Sbjct: 61 DDAVVLWFP---------------------------------APASATGENVV------- 80
Query: 148 LDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFN 207
E +HGS AVI + G L++ P LRPAEPGEF++RAF N
Sbjct: 81 ---------------------ELHIHGSRAVIATLFGVLSETPELRPAEPGEFTRRAFEN 119
Query: 208 NKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSE 267
KLDLT+ E L DLI A+T+ QR++AL Q+KG L WR+ I+E+ A +EA IDFS+
Sbjct: 120 GKLDLTEAEGLDDLIHADTDRQRRQALRQLKGLLGDKVRRWREQIIEAAALIEAGIDFSD 179
Query: 268 DEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
+ + +L S+V QL IE + + R+R G+ VI
Sbjct: 180 EGDVPAELLAPALSRVQQLLLEIEAVLAAQGRA-ERLRDGLTVVIA 224
>gi|223932526|ref|ZP_03624527.1| tRNA modification GTPase TrmE [Streptococcus suis 89/1591]
gi|302024152|ref|ZP_07249363.1| tRNA modification GTPase TrmE [Streptococcus suis 05HAS68]
gi|330833106|ref|YP_004401931.1| tRNA modification GTPase TrmE [Streptococcus suis ST3]
gi|386584498|ref|YP_006080901.1| tRNA modification GTPase TrmE [Streptococcus suis D9]
gi|223898797|gb|EEF65157.1| tRNA modification GTPase TrmE [Streptococcus suis 89/1591]
gi|329307329|gb|AEB81745.1| tRNA modification GTPase TrmE [Streptococcus suis ST3]
gi|353736644|gb|AER17653.1| tRNA modification GTPase TrmE [Streptococcus suis D9]
Length = 457
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 174/338 (51%), Gaps = 63/338 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYA-SLRNIVDPVSEVVLDEGLCLWFP 157
G+ + ++R+SG D A+ S + P ++ + +I+DP + VLDE +
Sbjct: 17 GEGAIGIVRLSGTDAF-AIASKVFKGKDLATVPSHSLNYGHIIDPATGQVLDEVILGVMR 75
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P +FT ED E HG IAV N IL L + G R AEPGEF+KRAF N ++DLTQ EA
Sbjct: 76 SPKTFTREDVIEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTKRAFLNGRVDLTQAEA 134
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ D+I+A+T+ A+ Q+ G+L QL ++ RQ ILN
Sbjct: 135 VMDVIRAKTDKAMHNAVRQLDGSLSQLINDTRQ-----------------------EILN 171
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
T LA VE ID+ E + +E+ V
Sbjct: 172 T-----------------------------------LAQVEVNIDYPEYDDVEEATTELV 196
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
R + +Q +E + + + G +R GI + I+G PNVGKSSL+N L +++ +IVT I
Sbjct: 197 REKTLQFQALLENLLRTARR-GKILREGIATAIIGRPNVGKSSLLNNLLREEKAIVTDIA 255
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 256 GTTRDVIEEYVNIKGVPLKLIDTAGIR-ETDDIVEKIG 292
>gi|344997643|ref|YP_004799986.1| tRNA modification GTPase mnmE [Caldicellulosiruptor lactoaceticus
6A]
gi|343965862|gb|AEM75009.1| tRNA modification GTPase mnmE [Caldicellulosiruptor lactoaceticus
6A]
Length = 455
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 128/343 (37%), Positives = 179/343 (52%), Gaps = 73/343 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMA---CYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLW 155
G G+ ++R+SG D + + + Y K RYA+L ++ D + +DE + +
Sbjct: 14 GTGGIGIVRLSGKDAFDIAEKLIRSRKYKSIKDIPARYAALVDVYD--GDEFVDEAILIK 71
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
F P+S+TGED E Q HG + V+ IL A K G R A PGEF+KRAF N ++DL+Q
Sbjct: 72 FKSPHSYTGEDIVEIQSHGGMVVLKRILEAAIK-NGARHAMPGEFTKRAFLNGRIDLSQA 130
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
EA+ D+I ++T L +Q A KQL Q I E I +
Sbjct: 131 EAVIDIINSKTRLLQQNAA-------KQLKGMLSQRIEE----------------ISQLL 167
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSE---DEIIEDN 332
LN V AS+EA IDFSE DE+
Sbjct: 168 LNLV-----------------------------------ASIEASIDFSEHEVDEVPHTE 192
Query: 333 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
IL+TV + + +++ ++ S + G I+SGI +VIVG PNVGKSSL+N L +++ +I
Sbjct: 193 ILSTVDAALQKINKLLK-----SYETGKAIKSGIYTVIVGRPNVGKSSLLNRLLKEEKAI 247
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
VT IPGTTRDVIE+ LDI G P+IL DTAG+R T D++E G
Sbjct: 248 VTDIPGTTRDVIEEVLDIEGIPIILADTAGVR-KTEDVVEKIG 289
>gi|183597177|ref|ZP_02958670.1| hypothetical protein PROSTU_00420 [Providencia stuartii ATCC 25827]
gi|386743474|ref|YP_006216653.1| tRNA modification GTPase TrmE [Providencia stuartii MRSN 2154]
gi|188023491|gb|EDU61531.1| tRNA modification GTPase TrmE [Providencia stuartii ATCC 25827]
gi|384480167|gb|AFH93962.1| tRNA modification GTPase TrmE [Providencia stuartii MRSN 2154]
Length = 454
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 176/336 (52%), Gaps = 73/336 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSGP +++ K+ KPRYA D V + VLD+G+ ++FP
Sbjct: 15 GRGGVGILRVSGPKAAVVAQTVLG----KLPKPRYADYLPFRD-VDDTVLDQGIAIFFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + + G+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLRRILTIDGVRIANPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLAS----VEAYIDFSEDEIIEDN 274
DLI A +E + A++ ++G +S ++E+L + VEA IDF ++EI +
Sbjct: 130 ADLIDASSEQAARSAMNSLQGA----FSAQIHQMVEALTTLRIYVEAAIDFPDEEI---D 182
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
L+ G IE + D++I D L
Sbjct: 183 FLS---------DGKIEAKL-------------------------------DDVIAD--L 200
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
VRS+ Q G +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 201 ERVRSEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVT 245
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 246 DIAGTTRDVLREHIHIDGMPLHVIDTAGLREASDEV 281
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
+ +TI A ++ G+ GV ++RVSGP +++ K+PKPRYA D V
Sbjct: 1 MQTNDTIVAQATPPGRGGVGILRVSGPKAAVVAQTVLG----KLPKPRYADYLPFRD-VD 55
Query: 84 KVVLDEGLCLWFP 96
VLD+G+ ++FP
Sbjct: 56 DTVLDQGIAIFFP 68
>gi|163803610|ref|ZP_02197476.1| tRNA modification GTPase TrmE [Vibrio sp. AND4]
gi|159172604|gb|EDP57462.1| tRNA modification GTPase TrmE [Vibrio sp. AND4]
Length = 453
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 121/336 (36%), Positives = 171/336 (50%), Gaps = 73/336 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP +A K KPRYA VLD+G+ L+FP
Sbjct: 14 GRGGVGIIRVSGPKA----NQVALEVTGKKLKPRYAEYLPF-QAGDGTVLDQGIALYFPN 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ ++ + + +R A PGEFS+RAF N+K+DLTQ EA+
Sbjct: 69 PHSFTGEDVLELQGHGGPVVMDMLIKRILGINDVRAARPGEFSERAFLNDKMDLTQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLAS----VEAYIDFSEDEIIEDN 274
DLI A +E + AL ++G +S+ Q ++ESL VEA IDF E+EI D
Sbjct: 129 ADLIDASSEEAAKSALQSLQGQ----FSQRIQTLVESLIHLRIYVEAAIDFPEEEI--DF 182
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
+ + ++ ++++I DN L
Sbjct: 183 LADG------------------------KVSGDLQAII------------------DN-L 199
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
N VR + Q G +R G+K VI G PN GKSSL+N L K+ +IVT
Sbjct: 200 NAVRKEANQ---------------GAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVT 244
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 245 DIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 280
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP +A K KPRYA VL
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPKA----NQVALEVTGKKLKPRYAEYLPF-QAGDGTVL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLNAL-KSMACYPDQKVSKPRYASLRNIVD 141
D+G+ L+FP H G V+ + GP ++ L K + D + ++P S R ++
Sbjct: 59 DQGIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGINDVRAARPGEFSERAFLN 117
>gi|262377654|ref|ZP_06070874.1| tRNA modification GTPase TrmE [Acinetobacter lwoffii SH145]
gi|262307413|gb|EEY88556.1| tRNA modification GTPase TrmE [Acinetobacter lwoffii SH145]
Length = 452
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 126/343 (36%), Positives = 173/343 (50%), Gaps = 78/343 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV VIR+SGP + + + +++ K R+A R D EV +DEGL + FP
Sbjct: 16 GRGGVGVIRLSGPKSYEIAQQLT---QKELPKARFAGFRQFYDAAGEV-MDEGLAICFPN 71
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG + NA+LG L +L G A+ GEFS RAF N KLDL Q EA+
Sbjct: 72 PNSFTGEDVVELQGHGGPVIQNALLGRLLEL-GATAAKAGEFSMRAFENGKLDLVQAEAI 130
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A ++ + A+ +L+ +S +N
Sbjct: 131 ADLIDATSQAAARSAVR----SLQGAFSTK---------------------------VNA 159
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI--IED----N 332
V Q++ H+ L VEA IDF E+EI + D N
Sbjct: 160 VLEQLI--------HLRLH-------------------VEAAIDFPEEEIDFLADGKILN 192
Query: 333 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
+L+ V S V Q ++ S + G +R G++ VI G+PN GKSSL+N L + +I
Sbjct: 193 LLDGVSSAVTQ--------VQQSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGIERAI 244
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
VT I GTTRDV+ + + + G P+ L DTAGLR T DI+E EG
Sbjct: 245 VTDIAGTTRDVLHEKITLNGLPITLTDTAGLR-ETGDIVEKEG 286
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 24/140 (17%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TI A+++ G+ GV VIR+SGP + + + +++PK R+A R D + V+
Sbjct: 6 TTIAAIATPPGRGGVGVIRLSGPKSYEIAQQLT---QKELPKARFAGFRQFYDAAGE-VM 61
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLNALK----------------SMACYPDQK 127
DEGL + FP + G V+ + GP NAL SM + + K
Sbjct: 62 DEGLAICFPNPNSFTGEDVVELQGHGGPVIQNALLGRLLELGATAAKAGEFSMRAFENGK 121
Query: 128 VSKPRYASLRNIVDPVSEVV 147
+ + ++ +++D S+
Sbjct: 122 LDLVQAEAIADLIDATSQAA 141
>gi|365888394|ref|ZP_09427163.1| putative tRNA modification GTPase (trmE) [Bradyrhizobium sp. STM
3809]
gi|365335950|emb|CCD99694.1| putative tRNA modification GTPase (trmE) [Bradyrhizobium sp. STM
3809]
Length = 444
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 118/336 (35%), Positives = 171/336 (50%), Gaps = 67/336 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
++++R+SGP AL+ +A K+ PR A+ + DP E + D+ + LWFP P
Sbjct: 18 SAIAIVRLSGPHAGAALQMLAG----KMPAPRLATRALLRDPQGEPI-DDAVVLWFPAPA 72
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
S TGED E +HGS AVI + G L+++P LRPAEPGEF++RAF N K+ D
Sbjct: 73 SATGEDVVELHIHGSRAVIATLFGVLSEMPELRPAEPGEFTRRAFENGKI---------D 123
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
L +AE D++I + R
Sbjct: 124 LTEAE----------------------------------------GLDDLIHADTDRQRR 143
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLAS-VEAYIDFSEDEIIEDNILNTVRS 339
+ QL G + G R RS + +I A+ +EA IDFS++ + +L S
Sbjct: 144 QALRQLKGLL----------GDRARSWREQIIEAAALIEAGIDFSDEGDVPAELLAPALS 193
Query: 340 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGT 399
+V QL IE + + R+R G+ VI G PN GKS+LMN L +++++IV+ GT
Sbjct: 194 RVQQLFLEIEAVLAAQGRA-ERLRDGLTVVIAGPPNAGKSTLMNQLARREVAIVSPQAGT 252
Query: 400 TRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TRD+IE LD+ GYPV ++DTAG+R T D +E EG
Sbjct: 253 TRDLIEVQLDLDGYPVTVIDTAGIR-ETDDPVEQEG 287
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TIFALSSG ++++R+SGP AL+ +A K+P PR A+ + DP + +
Sbjct: 6 QTIFALSSGRLPSAIAIVRLSGPHAGAALQMLAG----KMPAPRLATRALLRDPQGEPI- 60
Query: 88 DEGLCLWFP 96
D+ + LWFP
Sbjct: 61 DDAVVLWFP 69
>gi|90194140|gb|ABD92631.1| ThdF [Pasteurella canis]
Length = 436
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++RVSGP ++ ++ K KPR A D + +LD+G+ L+F
Sbjct: 4 GRGGIGILRVSGPKSVEVANAVLG----KCPKPRVADYLPFKD-LDGTILDQGIALYFKA 58
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ +L + ++ G+R A PGEFS++AF N+KLDL Q EA+
Sbjct: 59 PHSFTGEDVLELQGHGGQVVLDLLLKRILQIEGVRLARPGEFSEQAFLNDKLDLAQAEAI 118
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G ++ ++ VEA IDF ++EI D + +
Sbjct: 119 ADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEEI--DFLAD- 175
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE H+ +EII L+ VR
Sbjct: 176 ---------GKIEAHL-------------------------------NEIILQ--LDKVR 193
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S+ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 194 SEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 238
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T ++
Sbjct: 239 TTRDVLREHIHIDGMPLHIIDTAGLREATDEV 270
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ G+ ++RVSGP ++ ++ K PKPR A D + +LD+G+ L+F
Sbjct: 4 GRGGIGILRVSGPKSVEVANAVLG----KCPKPRVADYLPFKD-LDGTILDQGIALYFKA 58
Query: 98 -HGKCGVSVIRVSG 110
H G V+ + G
Sbjct: 59 PHSFTGEDVLELQG 72
>gi|398792987|ref|ZP_10553516.1| tRNA modification GTPase TrmE [Pantoea sp. YR343]
gi|398211776|gb|EJM98392.1| tRNA modification GTPase TrmE [Pantoea sp. YR343]
Length = 454
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 116/335 (34%), Positives = 170/335 (50%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISGAKAAEVAQAVLG----KLPKPRYADYLPFTD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRIVALPGLRIAQPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
RS V L G+ +RI + ++++ L VEA IDF ++EI + D
Sbjct: 141 ARSAVNSLQGAFS----------LRINALVEALTHLRIYVEAAIDFPDEEIDFLSDG--- 187
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+ +Q+ + G ++ + + G +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 188 KIEAQLNVVIGDLDG-VRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 246
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 247 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 12/168 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGAKAAEVAQAVLG----KLPKPRYADYLPFTD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVDP 142
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVALPGLRIAQPGEFSERAFLND 119
Query: 143 VSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAV-INAILGALTKL 189
++ E + + + G+ ++ INA++ ALT L
Sbjct: 120 KLDLAQAEAIADLIDASSEQAARSAVN-SLQGAFSLRINALVEALTHL 166
>gi|422908518|ref|ZP_16943211.1| tRNA modification GTPase TrmE [Vibrio cholerae HE-09]
gi|341640506|gb|EGS65092.1| tRNA modification GTPase TrmE [Vibrio cholerae HE-09]
Length = 453
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 122/344 (35%), Positives = 175/344 (50%), Gaps = 80/344 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVS----KPRYASLRNIVDPVSEVVLDEGLCL 154
G+ GV +IRVSGP +A + Q V+ +PRYA D + LD+G+ L
Sbjct: 14 GRGGVGIIRVSGP--------LAAHVAQTVTGRTLRPRYAEYLPFTDEDGQQ-LDQGIAL 64
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
+FP P+SFTGED E Q HG V++ ++ + ++ G+RPA PGEFS+RAF N+K+DLTQ
Sbjct: 65 FFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDLTQ 124
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
EA+ DLI A +E
Sbjct: 125 AEAIADLIDASSE----------------------------------------------- 137
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IED 331
+S + L G K RI + ++S+I L VEA IDF E+EI + D
Sbjct: 138 --QAAKSALQSLQGEFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLAD 185
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
++T ++ ++ + +N+ G +R G+K VI G PN GKSSL+N L K+ +
Sbjct: 186 GKVSTDLQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IVT I GTTRDV+ +H+ I G P+ ++DTAGLR SD +E G
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR-DASDAVEKIG 284
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + +++ + +PRYA D + L
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTG----RTLRPRYAEYLPFTDEDGQ-QL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALFFPNPHSFTGEDVLELQG 82
>gi|452751476|ref|ZP_21951222.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [alpha
proteobacterium JLT2015]
gi|451961626|gb|EMD84036.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [alpha
proteobacterium JLT2015]
Length = 427
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 116/330 (35%), Positives = 163/330 (49%), Gaps = 70/330 (21%)
Query: 101 CGVSVIRVSGPDTLNALKSMA--CYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
V+++R+SGP A+++++ C P PR A+L + DP S +L+ GL L+F
Sbjct: 17 AAVAILRISGPSAKAAVEALSGRCPP------PRQAALTTLRDPGSGDLLEAGLVLFFAA 70
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E QV GS A++ + L +P LR AEPGEF++RA KLDLTQ E L
Sbjct: 71 PASFTGEDVAELQVTGSRALVARLQSLLADMPDLRAAEPGEFARRALSAGKLDLTQAEGL 130
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
L+ AETE +R +A+ G ++Q WR + LN
Sbjct: 131 AALVDAETEAERSQAMMAAGGTIRQSAEGWR------------------------DRLNR 166
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSE-DEIIEDNILNTV 337
+R A +EA +DF + +E + + +V
Sbjct: 167 LR----------------------------------ADLEASLDFGDAEEDVARELEQSV 192
Query: 338 RSQVVQLHGSIEKHIELSNKCGV-RIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
++ V L I+ + LS R+ G IVG PN GKS+L+N L + +IV+
Sbjct: 193 QTPVSDLRDDID--LVLSGAAAAQRLSRGFTVAIVGPPNAGKSTLLNTLSRTDAAIVSDR 250
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426
GTTRDVIE +DIGG PV L+DTAGLR T
Sbjct: 251 AGTTRDVIEVPMDIGGLPVTLIDTAGLRAT 280
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 9/109 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TIFALSSG V+++R+SGP A+++++ + P PR A+L + DP S +L
Sbjct: 5 RTIFALSSGALPAAVAILRISGPSAKAAVEALSG----RCPPPRQAALTTLRDPGSGDLL 60
Query: 88 DEGLCLWFPRHGKC---GVSVIRVSGPDTLNA-LKS-MACYPDQKVSKP 131
+ GL L+F V+ ++V+G L A L+S +A PD + ++P
Sbjct: 61 EAGLVLFFAAPASFTGEDVAELQVTGSRALVARLQSLLADMPDLRAAEP 109
>gi|238881895|gb|EEQ45533.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 499
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 114/353 (32%), Positives = 176/353 (49%), Gaps = 75/353 (21%)
Query: 97 RHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDP-----VSEVVLDEG 151
+ GK ++V+R+SGP + + K K R AS+R + P V LDE
Sbjct: 29 KFGKSAIAVVRISGPQSKYIYHKLTN--STKPPKNRIASVRKLYSPEPHSNKKSVFLDEA 86
Query: 152 LCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG------LRPAEPGEFSKRAF 205
L L+ P P ++TGED E +HG +A+I ++L ++ KL +R A+ GEFSK+AF
Sbjct: 87 LTLFLPGPKTYTGEDLLELHLHGGVAIIKSVLQSIKKLHDPNNGVIIRQADRGEFSKQAF 146
Query: 206 FNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDF 265
+N +LDLT+ E + D+I AETE QR +L G K + +WR I+ +A++ IDF
Sbjct: 147 YNGRLDLTELEGINDMINAETESQRLASLASSSGQTKIEFMKWRNEIINQMANLTMIIDF 206
Query: 266 SEDEIIE--DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDF 323
ED IE D ++ V+ + ++ I+ +
Sbjct: 207 GEDHDIEETDRMIRDVKENIAKIESEIKAY------------------------------ 236
Query: 324 SEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMN 383
L+ V+S + L+G I+ ++G PN GKSS++N
Sbjct: 237 ----------LSKVKSSQILLNG-------------------IQLALLGPPNAGKSSILN 267
Query: 384 FLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT-TTSDIIETEG 435
L K +IV+ I GTTRD+++ L+IGGY V++ DTAG+R+ +D IE EG
Sbjct: 268 ILANKDAAIVSEIAGTTRDILDIPLEIGGYKVVVGDTAGIRSFEEADSIEQEG 320
>gi|416073364|ref|ZP_11584207.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|444337951|ref|ZP_21151864.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|348007318|gb|EGY47637.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|443545957|gb|ELT55682.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
Length = 451
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 172/335 (51%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEV---VLDEGLCLW 155
G+ G+ ++RVSGP + +++ K KPR A P E VLD+G+ L+
Sbjct: 13 GRGGIGILRVSGPKAIEVAQAVLG----KCPKPRMADYL----PFKEADGTVLDQGIALY 64
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
F PNSFTGED E Q HG V++ +L + ++ G+R A PGEFS++AF N+KLDL Q
Sbjct: 65 FKGPNSFTGEDVLELQGHGGQVVLDLLLKRILRIEGIRLARPGEFSEQAFLNDKLDLAQA 124
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
EA+ DLI A +E + AL ++G ++ ++ VEA IDF ++EI D +
Sbjct: 125 EAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEEI--DFL 182
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILN 335
+ G IE H+ ++II L+
Sbjct: 183 AD----------GKIEGHL-------------------------------NDIIAQ--LD 199
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
VR++ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 200 KVRAEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNTLAGREAAIVTD 244
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ + G P+ ++DTAGLR T ++
Sbjct: 245 IAGTTRDVLREHIHLDGMPLHIIDTAGLRDATDEV 279
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP + +++ K PKPR A +
Sbjct: 1 MKETIVAQATAPGRGGIGILRVSGPKAIEVAQAVLG----KCPKPRMADYLPFKE-ADGT 55
Query: 86 VLDEGLCLWF 95
VLD+G+ L+F
Sbjct: 56 VLDQGIALYF 65
>gi|389856987|ref|YP_006359230.1| tRNA modification GTPase TrmE [Streptococcus suis ST1]
gi|353740705|gb|AER21712.1| tRNA modification GTPase TrmE [Streptococcus suis ST1]
Length = 457
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 173/338 (51%), Gaps = 63/338 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYA-SLRNIVDPVSEVVLDEGLCLWFP 157
G+ + ++R+SG D A+ S + P ++ + +I+DP + VLDE +
Sbjct: 17 GEGAIGIVRLSGTDAF-AIASKVFKGKDLATVPSHSLNYGHIIDPATGQVLDEVMLGVMR 75
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P +FT ED E HG IAV N IL L + G R AEPGEF+KRAF N ++DLTQ EA
Sbjct: 76 SPKTFTREDVIEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTKRAFLNGRVDLTQAEA 134
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ D+I+A+T+ A+ Q+ G+L QL + RQ ILN
Sbjct: 135 VMDVIRAKTDKAMHNAVRQLDGSLSQLINNTRQ-----------------------EILN 171
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
T LA VE ID+ E + +E+ V
Sbjct: 172 T-----------------------------------LAQVEVNIDYPEYDDVEEATTELV 196
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
R + +Q +E + + + G +R GI + I+G PNVGKSSL+N L +++ +IVT I
Sbjct: 197 REKTLQFQALLENLLRTARR-GKILREGIATAIIGRPNVGKSSLLNNLLREEKAIVTDIA 255
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 256 GTTRDVIEEYVNIKGVPLKLIDTAGIR-ETDDIVEKIG 292
>gi|365966372|ref|YP_004947934.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|444347813|ref|ZP_21155620.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
gi|365745285|gb|AEW76190.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|443548105|gb|ELT57443.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
Length = 451
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 172/335 (51%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEV---VLDEGLCLW 155
G+ G+ ++RVSGP + +++ K KPR A P E VLD+G+ L+
Sbjct: 13 GRGGIGILRVSGPKAIEVAQAVLG----KCPKPRMADYL----PFKEADGTVLDQGIALY 64
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
F PNSFTGED E Q HG V++ +L + ++ G+R A PGEFS++AF N+KLDL Q
Sbjct: 65 FKGPNSFTGEDVLELQGHGGQVVLDLLLKRILRIEGIRLARPGEFSEQAFLNDKLDLAQA 124
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
EA+ DLI A +E + AL ++G ++ ++ VEA IDF ++EI D +
Sbjct: 125 EAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEEI--DFL 182
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILN 335
+ G IE H+ ++II L+
Sbjct: 183 AD----------GKIEGHL-------------------------------NDIIAQ--LD 199
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
VR++ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 200 KVRAEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNTLAGREAAIVTD 244
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ + G P+ ++DTAGLR T ++
Sbjct: 245 IAGTTRDVLREHIHLDGMPLHIIDTAGLRDATDEV 279
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP + +++ K PKPR A +
Sbjct: 1 MKETIVAQATAPGRGGIGILRVSGPKAIEVAQAVLG----KCPKPRMADYLPFKE-ADGT 55
Query: 86 VLDEGLCLWF 95
VLD+G+ L+F
Sbjct: 56 VLDQGIALYF 65
>gi|402840001|ref|ZP_10888474.1| tRNA modification GTPase TrmE [Klebsiella sp. OBRC7]
gi|402287316|gb|EJU35770.1| tRNA modification GTPase TrmE [Klebsiella sp. OBRC7]
Length = 436
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 113/328 (34%), Positives = 166/328 (50%), Gaps = 65/328 (19%)
Query: 103 VSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSF 162
+ ++R+SG + +++ K+ KPRYA D LD+G+ LWFP PNSF
Sbjct: 1 MGILRISGLKARDVAQAVLG----KLPKPRYADYLPFKDSDGSA-LDQGIALWFPGPNSF 55
Query: 163 TGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLI 222
TGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+ DLI
Sbjct: 56 TGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLI 115
Query: 223 QAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQ 282
A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 116 DASSEQAARSALNSLQGAFSTRVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD---- 168
Query: 283 VVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVV 342
G IE + +++I D L+ VR++
Sbjct: 169 -----GKIEAQL-------------------------------NDVIAD--LDAVRAEAR 190
Query: 343 QLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRD 402
Q G +R G+K VI G PN GKSSL+N L ++ +IVT I GTTRD
Sbjct: 191 Q---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 235
Query: 403 VIEKHLDIGGYPVILLDTAGLRTTTSDI 430
V+ +H+ I G P+ ++DTAGLR ++
Sbjct: 236 VLREHIHIDGMPLHIIDTAGLRDANDEV 263
>gi|387121632|ref|YP_006287515.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|415756956|ref|ZP_11481210.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416045382|ref|ZP_11575351.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|416067982|ref|ZP_11582570.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|429734831|ref|ZP_19268831.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans Y4]
gi|347995371|gb|EGY36555.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|348001458|gb|EGY42200.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|348655635|gb|EGY71080.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|385876124|gb|AFI87683.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|429151101|gb|EKX93985.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans Y4]
Length = 451
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 172/335 (51%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEV---VLDEGLCLW 155
G+ G+ ++RVSGP + +++ K KPR A P E VLD+G+ L+
Sbjct: 13 GRGGIGILRVSGPKAIEVAQAVLG----KCPKPRMADYL----PFKEADGTVLDQGIALY 64
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
F PNSFTGED E Q HG V++ +L + ++ G+R A PGEFS++AF N+KLDL Q
Sbjct: 65 FKGPNSFTGEDVLELQGHGGQVVLDLLLKRILRIEGIRLARPGEFSEQAFLNDKLDLAQA 124
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
EA+ DLI A +E + AL ++G ++ ++ VEA IDF ++EI D +
Sbjct: 125 EAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEEI--DFL 182
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILN 335
+ G IE H+ ++II L+
Sbjct: 183 AD----------GKIEGHL-------------------------------NDIIAQ--LD 199
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
VR++ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 200 KVRAEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNTLAGREAAIVTD 244
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ + G P+ ++DTAGLR T ++
Sbjct: 245 IAGTTRDVLREHIHLDGMPLHIIDTAGLRDATDEV 279
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP + +++ K PKPR A +
Sbjct: 1 MKETIVAQATAPGRGGIGILRVSGPKAIEVAQAVLG----KCPKPRMADYLPFKE-ADGT 55
Query: 86 VLDEGLCLWF 95
VLD+G+ L+F
Sbjct: 56 VLDQGIALYF 65
>gi|395226297|ref|ZP_10404785.1| tRNA modification GTPase TrmE [Thiovulum sp. ES]
gi|394445507|gb|EJF06412.1| tRNA modification GTPase TrmE [Thiovulum sp. ES]
Length = 450
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 113/338 (33%), Positives = 179/338 (52%), Gaps = 64/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
HG +S++RVSG + L + S C +++ +PR+A L I + E LD G+ ++F
Sbjct: 12 HGVGAISIVRVSGKNALQ-IASKICRVEERFFQPRFAHLLTIYNSSGEK-LDRGIVIYFK 69
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
PNSFTGED EFQ HG + + IL T G RPA GEFS+RAF N K+D+T+ EA
Sbjct: 70 NPNSFTGEDIVEFQTHGGVVLSKMILKE-TLFFGARPARGGEFSQRAFLNGKMDMTEVEA 128
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+G+LI+A++E ++ Q+ G LK N+++
Sbjct: 129 VGNLIEAKSEEAVKELSKQLHGELK-------------------------------NLVS 157
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+RS+++ + LA E ID++E+++ ED I ++
Sbjct: 158 KIRSELLNI---------------------------LAHSEVTIDYAEEDLPED-IEESI 189
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
++ ++ + K + + +K RI G K I+G+PNVGKSS +N L + +IV+ I
Sbjct: 190 EQKLSEIEKEL-KSLSIKSKSRNRIFEGFKISIIGKPNVGKSSFLNMLLNYERAIVSPIE 248
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRD +E++L IG + V ++DTAG+R +SD +E G
Sbjct: 249 GTTRDSVEEYLTIGTHLVKIVDTAGIR-ESSDFVEKIG 285
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TI A+S+ HG +S++RVSG + L + S C +++ +PR+A L I + S LD
Sbjct: 4 TISAISTAHGVGAISIVRVSGKNALQ-IASKICRVEERFFQPRFAHLLTIYNS-SGEKLD 61
Query: 89 EGLCLWF 95
G+ ++F
Sbjct: 62 RGIVIYF 68
>gi|417822168|ref|ZP_12468770.1| tRNA modification GTPase TrmE [Vibrio cholerae HE48]
gi|340049781|gb|EGR10693.1| tRNA modification GTPase TrmE [Vibrio cholerae HE48]
Length = 453
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 122/344 (35%), Positives = 175/344 (50%), Gaps = 80/344 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVS----KPRYASLRNIVDPVSEVVLDEGLCL 154
G+ GV +IRVSGP +A + Q V+ +PRYA D + LD+G+ L
Sbjct: 14 GRGGVGIIRVSGP--------LAAHVAQTVTGRTLRPRYAEYLPFTDEDGQQ-LDQGIAL 64
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
+FP P+SFTGED E Q HG V++ ++ + ++ G+RPA PGEFS+RAF N+K+DLTQ
Sbjct: 65 FFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDLTQ 124
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
EA+ DLI A +E
Sbjct: 125 AEAIADLIDASSE----------------------------------------------- 137
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IED 331
+S + L G K RI + ++S+I L VEA IDF E+EI + D
Sbjct: 138 --QAAKSALQSLQGEFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLAD 185
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
++T ++ ++ + +N+ G +R G+K VI G PN GKSSL+N L K+ +
Sbjct: 186 GKVSTDLQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IVT I GTTRDV+ +H+ I G P+ ++DTAGLR SD +E G
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR-DASDAVEKIG 284
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + +++ + +PRYA D + L
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTG----RTLRPRYAEYLPFTDEDGQ-QL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALFFPNPHSFTGEDVLELQG 82
>gi|388851977|emb|CCF54333.1| related to MSS1-mitochondrial GTPase involved in expression of COX1
[Ustilago hordei]
Length = 555
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 131/399 (32%), Positives = 196/399 (49%), Gaps = 71/399 (17%)
Query: 61 CYPDQKVPKPRYAS---LRNIVDPVSKVVLDEGLCLWFPRHGKCGVSVIRVSGPDTLNAL 117
C P ++ P + + +RN+ S+ LD+ L G GV++IR+SGP T
Sbjct: 20 CIPSIRLQVPTFLAPFLIRNVGTTTSRSPLDKKLA---SGSGIAGVAIIRISGPRTSELY 76
Query: 118 KSMACYPDQKVSKPRYAS-----LRNIVDPVSEVVLDEGL-CLWFPKPNSFTGEDCCEFQ 171
S+ C + R S LRNI DP+S +LD G ++FP S+TGE E
Sbjct: 77 FSL-CLTSRLTRYRRLPSSHKLVLRNIHDPISGELLDVGAGIIYFPAGRSYTGEQVLELH 135
Query: 172 VHGSIAVINAILGAL--------------TKLPG-LRPAEPGEFSKRAFFNNKLDLTQTE 216
+HG A + ++ A+ +L G +RPA+PGEF++RA+ NN+LDL E
Sbjct: 136 IHGGSATVRDVMDAIWACSNVASNNVGKGERLCGRVRPADPGEFTRRAYTNNRLDLASAE 195
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
AL LI +ET QRQ AL G QLY E R +L +A +EA IDF + + +ED L
Sbjct: 196 ALHSLITSETSRQRQVALFGASGLQTQLYEEIRARLLGFMAMMEALIDFGDQDGVEDGTL 255
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
+ S V L L ++ G+R E+ +
Sbjct: 256 HAALSSVESL------ATMLRSELGLRPSK-----------------------EEEKGSR 286
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
++ Q ++H+ G + +GI+ I G PN GKSSL+N L ++ +IV+ +
Sbjct: 287 IQRQ--------KRHV------GEILTNGIRLAIYGPPNAGKSSLLNRLADRKAAIVSDL 332
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
PGTTRDV++ +LD+ GY V++ DTAG+R + EG
Sbjct: 333 PGTTRDVLQVNLDLAGYKVLVYDTAGIRDDPERSSDVEG 371
>gi|229520177|ref|ZP_04409604.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae TM
11079-80]
gi|419827708|ref|ZP_14351203.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-1A2]
gi|419834944|ref|ZP_14358394.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-46B1]
gi|421341589|ref|ZP_15792000.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-43B1]
gi|421352772|ref|ZP_15803112.1| tRNA modification GTPase TrmE [Vibrio cholerae HE-45]
gi|422305401|ref|ZP_16392606.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1035(8)]
gi|422915735|ref|ZP_16950100.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-02A1]
gi|423733283|ref|ZP_17706522.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-41B1]
gi|423810643|ref|ZP_17714689.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-55C2]
gi|423844881|ref|ZP_17718427.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-59A1]
gi|423876913|ref|ZP_17722094.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-60A1]
gi|423994668|ref|ZP_17739432.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-02C1]
gi|424007584|ref|ZP_17750546.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-44C1]
gi|424011950|ref|ZP_17754715.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-55B2]
gi|424017962|ref|ZP_17757780.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-59B1]
gi|424589278|ref|ZP_18028742.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1037(10)]
gi|424623343|ref|ZP_18061835.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-50A1]
gi|424627912|ref|ZP_18066239.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-51A1]
gi|424631860|ref|ZP_18069998.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-52A1]
gi|424638774|ref|ZP_18076686.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-56A1]
gi|424647028|ref|ZP_18084722.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-57A1]
gi|443525900|ref|ZP_21092007.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-78A1]
gi|229342771|gb|EEO07762.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae TM
11079-80]
gi|341642096|gb|EGS66583.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-02A1]
gi|395948217|gb|EJH58870.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-43B1]
gi|395956920|gb|EJH67509.1| tRNA modification GTPase TrmE [Vibrio cholerae HE-45]
gi|408017770|gb|EKG55252.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-50A1]
gi|408023485|gb|EKG60647.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-52A1]
gi|408028487|gb|EKG65377.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-56A1]
gi|408037964|gb|EKG74324.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1037(10)]
gi|408038742|gb|EKG75069.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-57A1]
gi|408060076|gb|EKG94791.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-51A1]
gi|408624719|gb|EKK97657.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-1A2]
gi|408629027|gb|EKL01741.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1035(8)]
gi|408632749|gb|EKL05184.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-41B1]
gi|408637473|gb|EKL09521.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-55C2]
gi|408645356|gb|EKL17011.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-60A1]
gi|408646455|gb|EKL18055.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-59A1]
gi|408855746|gb|EKL95442.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-02C1]
gi|408859672|gb|EKL99327.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-46B1]
gi|408863205|gb|EKM02697.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-55B2]
gi|408868334|gb|EKM07670.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-44C1]
gi|408871773|gb|EKM11001.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-59B1]
gi|443455708|gb|ELT19468.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-78A1]
Length = 453
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 122/344 (35%), Positives = 175/344 (50%), Gaps = 80/344 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVS----KPRYASLRNIVDPVSEVVLDEGLCL 154
G+ GV +IRVSGP +A + Q V+ +PRYA D + LD+G+ L
Sbjct: 14 GRGGVGIIRVSGP--------LAAHVAQTVTGRTLRPRYAEYLPFTDEDGQQ-LDQGIAL 64
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
+FP P+SFTGED E Q HG V++ ++ + ++ G+RPA PGEFS+RAF N+K+DLTQ
Sbjct: 65 FFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDLTQ 124
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
EA+ DLI A +E
Sbjct: 125 AEAIADLIDASSE----------------------------------------------- 137
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IED 331
+S + L G K RI + ++S+I L VEA IDF E+EI + D
Sbjct: 138 --QAAKSALQSLQGEFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLAD 185
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
++T ++ ++ + +N+ G +R G+K VI G PN GKSSL+N L K+ +
Sbjct: 186 GKVSTDLQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IVT I GTTRDV+ +H+ I G P+ ++DTAGLR SD +E G
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR-DASDAVEKIG 284
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + +++ + +PRYA D + L
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTG----RTLRPRYAEYLPFTDEDGQ-QL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALFFPNPHSFTGEDVLELQG 82
>gi|359788473|ref|ZP_09291449.1| tRNA modification GTPase TrmE [Mesorhizobium alhagi CCNWXJ12-2]
gi|359255730|gb|EHK58626.1| tRNA modification GTPase TrmE [Mesorhizobium alhagi CCNWXJ12-2]
Length = 441
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 114/324 (35%), Positives = 164/324 (50%), Gaps = 64/324 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
G++V+R+SGP T L+++ V +PR+A D V D G+ L+F P
Sbjct: 17 AGIAVVRISGPKTRFVLETITG----SVPEPRFARYGAFADGAGTHV-DSGITLFFEGPA 71
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGED E HG AV+ A+L AL + G+RPAE GEF++RAF N K+DL + EAL D
Sbjct: 72 SFTGEDSAELHAHGGKAVVAALLDALCAIEGVRPAEAGEFTRRAFLNGKVDLLKAEALAD 131
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
L+ AETE QR+ A +LN+
Sbjct: 132 LVSAETEAQRRFA-----------------------------------------VLNS-- 148
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
HG H EL R+ + A +EA +DFS++ + ++ + + +
Sbjct: 149 ------HGG---HKELYAGWRRRL------IHARAMIEAEMDFSDEADVPGSVADQIWAD 193
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
+ ++ G + +HI + + IR G VI+G PN GKSSL+N L ++ +IVT PGTT
Sbjct: 194 IERMSGEMRRHIAGFGRAEI-IRDGFDVVILGAPNAGKSSLLNALAKRDAAIVTDEPGTT 252
Query: 401 RDVIEKHLDIGGYPVILLDTAGLR 424
RD+IE LD+ G V + DTAGLR
Sbjct: 253 RDLIEVALDLDGRKVRVTDTAGLR 276
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
++TI ALSSG G++V+R+SGP T L+++ VP+PR+A D V
Sbjct: 4 RDTIVALSSGRLPAGIAVVRISGPKTRFVLETITG----SVPEPRFARYGAFADGAGTHV 59
Query: 87 LDEGLCLWF 95
D G+ L+F
Sbjct: 60 -DSGITLFF 67
>gi|395792671|ref|ZP_10472095.1| tRNA modification GTPase mnmE [Bartonella vinsonii subsp. arupensis
Pm136co]
gi|395432228|gb|EJF98217.1| tRNA modification GTPase mnmE [Bartonella vinsonii subsp. arupensis
Pm136co]
Length = 435
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 113/329 (34%), Positives = 162/329 (49%), Gaps = 64/329 (19%)
Query: 102 GVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNS 161
GV+VIR+SGP +N +K++ ++ K R+ N+ LD L ++FP P+S
Sbjct: 15 GVAVIRLSGPHVINVVKTLC----GRLPKARFMHYGNLT-ARDGSFLDSALTVFFPAPHS 69
Query: 162 FTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDL 221
FTGEDC EF +HG AV+N L L+ G R AE GEFS+RAF KLDL Q E L DL
Sbjct: 70 FTGEDCAEFHLHGGKAVVNRFLDELSTFSGCRIAEAGEFSRRAFMEGKLDLVQAEGLADL 129
Query: 222 IQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRS 281
I+AETE QR+ A+ G L LY +WR ++++ A +EA +DF ++ + ++I + V
Sbjct: 130 IEAETESQRRLAIMGTSGRLTTLYRDWRHKLMKARAFIEAELDFVDEADVPNSISDKVWK 189
Query: 282 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQV 341
+ L S+++HI+ + + +R G+K VI A
Sbjct: 190 DMEDLCTSLQEHIDEGERASI-LRDGLKIVIAGAPNSG---------------------- 226
Query: 342 VQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTR 401
+S I + + G P +SIVT GTTR
Sbjct: 227 ---------------------KSSIMNRLAGRP---------------VSIVTEEAGTTR 250
Query: 402 DVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
D +E L +GG PV L DTAG R T + I
Sbjct: 251 DALEMRLILGGLPVFLTDTAGFRETENKI 279
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFA+SSG GV+VIR+SGP +N +K++ ++PK R+ N+ L
Sbjct: 2 DTIFAVSSGLLPSGVAVIRLSGPHVINVVKTLC----GRLPKARFMHYGNLT-ARDGSFL 56
Query: 88 DEGLCLWFP 96
D L ++FP
Sbjct: 57 DSALTVFFP 65
>gi|260942413|ref|XP_002615505.1| hypothetical protein CLUG_04387 [Clavispora lusitaniae ATCC 42720]
gi|238850795|gb|EEQ40259.1| hypothetical protein CLUG_04387 [Clavispora lusitaniae ATCC 42720]
Length = 492
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 125/388 (32%), Positives = 191/388 (49%), Gaps = 91/388 (23%)
Query: 67 VPKPRYASLRNIVDPVSKVVLDEGLCLWF--------PRHGKCGVSVIRVSGPDTLNALK 118
+PKP +R I ++ C ++ R G+ + VIRVSGP K
Sbjct: 3 IPKPWLQPVRTICPKIT-------FCRFYHPTIFALSTRPGRAAIGVIRVSGP------K 49
Query: 119 SMACYPDQKVSK----PRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHG 174
+ Y SK P+ S+R I S +LDE L ++F P ++TGED E VHG
Sbjct: 50 AQYVYHQLTKSKKPPLPQRTSVRRIFG--SNGMLDEALTVFFRGPKTYTGEDLLELHVHG 107
Query: 175 SIAVINAILGALTKLPG------LRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETEL 228
A+I A+LGA+ +L +R A+ GEFS+RAF + +LDLT+ E + ++I A+TE
Sbjct: 108 GNAIIKAVLGAIQELHDPENGTEIRMAQQGEFSRRAFMSGRLDLTEIEGIREMIDADTES 167
Query: 229 QRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHG 288
QR AL + G KQ+++ WR+ I+ ++A + IDF E+ +E+ +L
Sbjct: 168 QRLSALASLTGENKQVFARWREEIVRNMALLTTVIDFGEEHDLEET---------KELFS 218
Query: 289 SIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSI 348
++EK I+ + +E+Y L VR + L G
Sbjct: 219 TVEKSID----------------SLITEIESY-------------LRKVRGSDILLRG-- 247
Query: 349 EKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHL 408
IK ++G PN GKSSL+N+L +IV+ I GTTRD+++ L
Sbjct: 248 -----------------IKVCLLGPPNAGKSSLLNYLANNDTAIVSHIAGTTRDILDVPL 290
Query: 409 DIGGYPVILLDTAGLRT-TTSDIIETEG 435
DIGG+ V++ D+AG+R+ +D IE EG
Sbjct: 291 DIGGFKVVVGDSAGIRSLEKADTIEQEG 318
>gi|254472335|ref|ZP_05085735.1| tRNA modification GTPase TrmE [Pseudovibrio sp. JE062]
gi|211958618|gb|EEA93818.1| tRNA modification GTPase TrmE [Pseudovibrio sp. JE062]
Length = 449
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 134/212 (63%), Gaps = 4/212 (1%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+VIR+SGP + L+++ K R + L+ + DPV VLD L LWF P
Sbjct: 18 SGVAVIRLSGPQSGPILRTLI---KGKFPVSRESCLKKLWDPVDGSVLDHALILWFEGPG 74
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGED E HG AV+ A+L AL+ RPAE GEF++RAF NNKLDLT+ E L D
Sbjct: 75 SFTGEDTVELHCHGGRAVVAAVLRALSTFEKTRPAEQGEFTRRAFHNNKLDLTEVEGLAD 134
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI AET+ QR++A QM G L LYS+WR+ ++ S A +EA +DFS+++ I D++ + +
Sbjct: 135 LIDAETDAQRRQAQRQMDGALGDLYSQWRETLIRSRAMIEAELDFSDEDDIPDSVADEIW 194
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
++ +L I H+ + + G R+RSG++ V+
Sbjct: 195 VELAKLRDQIIAHLSDARR-GERLRSGLQVVL 225
>gi|238494022|ref|XP_002378247.1| mitochondrial GTPase (Mss1), putative [Aspergillus flavus NRRL3357]
gi|220694897|gb|EED51240.1| mitochondrial GTPase (Mss1), putative [Aspergillus flavus NRRL3357]
gi|391874267|gb|EIT83177.1| GTPase [Aspergillus oryzae 3.042]
Length = 621
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 111/339 (32%), Positives = 177/339 (52%), Gaps = 73/339 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSE----VVLDEG-LC 153
G+ ++V+RVSGP + +++ P + +PR+A++R + DP E LD G L
Sbjct: 74 GRAAIAVVRVSGPGCVRIYQALC--PKAALPRPRFAAVRTLFDPTREPSSSSALDAGALV 131
Query: 154 LWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG----LRPAEPGEFSKRAFFNNK 209
L+FP PN+ TGED E +HG A++ ++L A++++ +R AEPGEF++RAF NN+
Sbjct: 132 LYFPAPNTVTGEDVLELHLHGGPAIVKSVLTAISRVSQPDSLVRYAEPGEFTRRAFMNNR 191
Query: 210 LDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDE 269
LDL Q EALGD + A+TE QR+ A+ L + Y +W
Sbjct: 192 LDLPQIEALGDTLSADTEQQRRLAVRGASDALSRRYEQW--------------------- 230
Query: 270 IIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEII 329
R Q++ G +E A IDF+ED+
Sbjct: 231 ----------RQQLLYARGELE---------------------------ALIDFAEDQHF 253
Query: 330 E---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLC 386
+ D ++ +V +QV L + HI+ ++K G +R GIK ++G PN GKSSL+N +
Sbjct: 254 DESSDELVLSVAAQVQALRVQVGFHIQNASK-GELLRHGIKIALLGAPNAGKSSLLNQIV 312
Query: 387 QKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425
K+ +IV++ GTTRD+++ +D+ G+ L D AG+R+
Sbjct: 313 GKEAAIVSTEEGTTRDIVDVGVDLSGWYCKLGDMAGIRS 351
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 141/304 (46%), Gaps = 70/304 (23%)
Query: 16 FFSRRCSHLAIK--NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYA 73
F + R +H I +TI+ALS+ G+ ++V+RVSGP + +++ P +P+PR+A
Sbjct: 50 FSASRPTHSLIDGDSTIYALSTASGRAAIAVVRVSGPGCVRIYQALC--PKAALPRPRFA 107
Query: 74 SLRNIVDPV----SKVVLDEG-LCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKV 128
++R + DP S LD G L L+FP V+G D L + + +
Sbjct: 108 AVRTLFDPTREPSSSSALDAGALVLYFPAPNT-------VTGEDVLE----LHLHGGPAI 156
Query: 129 SKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTK 188
K ++ + P S V + +P FT
Sbjct: 157 VKSVLTAISRVSQPDSLV--------RYAEPGEFT------------------------- 183
Query: 189 LPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEW 248
+RAF NN+LDL Q EALGD + A+TE QR+ A+ L + Y +W
Sbjct: 184 -------------RRAFMNNRLDLPQIEALGDTLSADTEQQRRLAVRGASDALSRRYEQW 230
Query: 249 RQLILESLASVEAYIDFSEDEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIR 305
RQ +L + +EA IDF+ED+ + D ++ +V +QV L + HI+ ++K G +R
Sbjct: 231 RQQLLYARGELEALIDFAEDQHFDESSDELVLSVAAQVQALRVQVGFHIQNASK-GELLR 289
Query: 306 SGIK 309
GIK
Sbjct: 290 HGIK 293
>gi|378697209|ref|YP_005179167.1| GTPase [Haemophilus influenzae 10810]
gi|301169727|emb|CBW29328.1| GTPase [Haemophilus influenzae 10810]
Length = 452
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 115/332 (34%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++RVSGP +++ K KPR A D +LD+G+ L+F
Sbjct: 13 GRGGIGILRVSGPLATKVAQAILG----KCPKPRMADYLPFKD-ADGTILDQGIALYFKS 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L + ++ G+R A PGEFS++AF N+KLDL Q EA+
Sbjct: 68 PNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLDLAQAEAI 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G + +E ++ VEA IDF ++EI D + +
Sbjct: 128 ADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEEI--DFLADG 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+I + ++ +I N L VR
Sbjct: 186 ------------------------KIEANLRGII-------------------NQLEDVR 202
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S+ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 203 SEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 247
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T ++
Sbjct: 248 TTRDVLREHIHIDGMPLHIIDTAGLRDATDEV 279
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP +++ K PKPR A D
Sbjct: 1 MKETIVAQATAPGRGGIGILRVSGPLATKVAQAILG----KCPKPRMADYLPFKD-ADGT 55
Query: 86 VLDEGLCLWF 95
+LD+G+ L+F
Sbjct: 56 ILDQGIALYF 65
>gi|308188770|ref|YP_003932901.1| tRNA modification GTPase [Pantoea vagans C9-1]
gi|308059280|gb|ADO11452.1| tRNA modification GTPase [Pantoea vagans C9-1]
Length = 454
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 165/334 (49%), Gaps = 69/334 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + + K+ KPRYA D V LD+G+ LWFP
Sbjct: 15 GRGGVGILRVSGAQAAEVARQLLG----KLPKPRYADYLPFTDSDGSV-LDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRIVALPGVRIAQPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
VRS V L G+ + + +R VEA IDF ++EI + L+ R
Sbjct: 141 VRSAVNSLQGAFSTRVNHLVEALTHLR---------IYVEAAIDFPDEEI---DFLSDGR 188
Query: 339 --SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+Q+ + G ++ + + G +R G+K VI G PN GKSSL+N L + +IVT I
Sbjct: 189 IEAQLNTVIGDLDA-VRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTDI 247
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 248 AGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++RVSG + + K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRVSGAQAAEVARQLLG----KLPKPRYADYLPFTDS-DGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVALPGVRIAQPGEFSERAFLN 118
>gi|323445332|gb|EGB01994.1| hypothetical protein AURANDRAFT_9780 [Aureococcus anophagefferens]
Length = 299
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/331 (34%), Positives = 163/331 (49%), Gaps = 62/331 (18%)
Query: 109 SGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCC 168
SGP +AL ++ P + + R ASLR + D + VLDE L L F P SFTGED
Sbjct: 23 SGPSASDALAAL--TPGKPLPAHRVASLRTLRD--ASDVLDEALVLRFEAPRSFTGEDVV 78
Query: 169 EFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETEL 228
E HG A ++ +L AL +P LR A+ GEF++RAF KL LT+ E L DL+ A+T
Sbjct: 79 ELHCHGGEATVDGVLEALDNIPKLRAADRGEFTRRAFAAGKLGLTEVEGLADLLAAKTAP 138
Query: 229 QRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHG 288
QR++AL QM G++++ Y+ WR + AS E +DF +D +E ++
Sbjct: 139 QRRQALAQMGGSMERTYARWRGELASLRASAEVLVDFGDD--VEGDV------------- 183
Query: 289 SIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSI 348
D S+D I + +VRS +L ++
Sbjct: 184 --------------------------------ADQSDD--IRAALDASVRSLKTELDAAL 209
Query: 349 EKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHL 408
G R G++ V+ G PN GKSSL+N + + +IV+ GTTRDV+E L
Sbjct: 210 TDAPR-----GEATRDGVRVVLAGAPNAGKSSLLNAVAARDAAIVSQAAGTTRDVLEIGL 264
Query: 409 DIGGYPVILLDTAGLRT----TTSDIIETEG 435
+GG P L DTAGLR + D +E EG
Sbjct: 265 SLGGLPARLFDTAGLRVDGEEDSLDAVEVEG 295
>gi|7994696|sp|O51830.1|MNME_BUCMP RecName: Full=tRNA modification GTPase MnmE
gi|2754806|gb|AAC04235.1| ThdF [Buchnera aphidicola (Myzus persicae)]
Length = 453
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 119/333 (35%), Positives = 173/333 (51%), Gaps = 67/333 (20%)
Query: 99 GKCGVSVIRVSGPDT-LNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
GK VS++R+SG T + A K + P K R+A+ + S VVLD+G+ LWFP
Sbjct: 15 GKSAVSILRISGSQTKIVAKKVLGSIP-----KARFATYSKFLGKNS-VVLDQGISLWFP 68
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGED E Q HGS +++ ++ +T + +R A+PGEFS+RAF N K+DL Q EA
Sbjct: 69 APFSFTGEDVLELQGHGSPLIMDLLIKRITSIENVRMAKPGEFSERAFLNGKIDLIQAEA 128
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DLI +ETE + +LH ++G+ + ++E ++E+ IDFSE+EI D
Sbjct: 129 IDDLINSETESSIRASLHSLQGDFSSHIKQLISTVIEFRTNIESSIDFSEEEIDID---- 184
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+KS+I YI E +E+ + T
Sbjct: 185 ------------------------------LKSLI-------YIKLKE---LEEKFIKTK 204
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+ V GS+ ++ G K VI G PN GKSSL+N L +IVT IP
Sbjct: 205 K---VISEGSL-------------LKEGKKIVIAGPPNAGKSSLLNALSHSNRAIVTKIP 248
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRD++ +++ I G L+DTAGLR T ++I
Sbjct: 249 GTTRDLLYENISINGISCQLIDTAGLRDTKNEI 281
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 10/129 (7%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TI A + GK VS++R+SG T K +A +PK R+A+ + S VVLD
Sbjct: 6 TIVAPVTSPGKSAVSILRISGSQT----KIVAKKVLGSIPKARFATYSKFLGKNS-VVLD 60
Query: 89 EGLCLWFPR-HGKCGVSVIRVSG---PDTLNAL-KSMACYPDQKVSKPRYASLRNIVDPV 143
+G+ LWFP G V+ + G P ++ L K + + +++KP S R ++
Sbjct: 61 QGISLWFPAPFSFTGEDVLELQGHGSPLIMDLLIKRITSIENVRMAKPGEFSERAFLNGK 120
Query: 144 SEVVLDEGL 152
+++ E +
Sbjct: 121 IDLIQAEAI 129
>gi|422882368|ref|ZP_16928824.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK355]
gi|332360300|gb|EGJ38113.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK355]
Length = 457
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 175/339 (51%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + +S+ +L +IVDP ++ +LDE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKI--FKGKNLSEVESHTLNYGHIVDPQNQEILDEVMLGAM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 RSPKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARMAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL +LA VE ID+ E + +E+
Sbjct: 134 AVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNIDYPEYDDVEEMTT 193
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
+R + + E + N+LNT
Sbjct: 194 QLMREKTAEF----------------------------------------ETLLSNLLNT 213
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
R G I +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 214 AR------RGKI-------------LREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 255 EGTTRDVIEEYVNIKGVPLKLIDTAGIR-ETDDLVEQIG 292
>gi|416052975|ref|ZP_11578610.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|347991767|gb|EGY33230.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
Length = 451
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 172/335 (51%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEV---VLDEGLCLW 155
G+ G+ ++RVSGP + +++ K KPR A P E VLD+G+ L+
Sbjct: 13 GRGGIGILRVSGPKAVEVAQAVLG----KCPKPRMADYL----PFKEADGTVLDQGIALY 64
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
F PNSFTGED E Q HG V++ +L + ++ G+R A PGEFS++AF N+KLDL Q
Sbjct: 65 FKGPNSFTGEDVLELQGHGGQVVLDLLLKRILRIEGIRLARPGEFSEQAFLNDKLDLAQA 124
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
EA+ DLI A +E + AL ++G ++ ++ VEA IDF ++EI D +
Sbjct: 125 EAIADLIDASSEQAARSALKSLQGKFSNKVNQLVDSVIYLRTYVEAAIDFPDEEI--DFL 182
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILN 335
+ G IE H+ ++II L+
Sbjct: 183 AD----------GKIEGHL-------------------------------NDIIAQ--LD 199
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
VR++ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 200 KVRAEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 244
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ + G P+ ++DTAGLR T ++
Sbjct: 245 IAGTTRDVLREHIHLDGMPLHIIDTAGLRDATDEV 279
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP + +++ K PKPR A +
Sbjct: 1 MKETIVAQATAPGRGGIGILRVSGPKAVEVAQAVLG----KCPKPRMADYLPFKE-ADGT 55
Query: 86 VLDEGLCLWF 95
VLD+G+ L+F
Sbjct: 56 VLDQGIALYF 65
>gi|381403455|ref|ZP_09928139.1| tRNA modification GTPase TrmE [Pantoea sp. Sc1]
gi|380736654|gb|EIB97717.1| tRNA modification GTPase TrmE [Pantoea sp. Sc1]
Length = 454
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 161/332 (48%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + + K+ KPRYA D V LD+G+ LWFP
Sbjct: 15 GRGGVGILRVSGAQAAEVARQLLG----KLPKPRYADYLPFTDSDGSV-LDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG +++ +L + LPG+R A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PHSFTGEDVLELQGHGGPVILDLLLKRIVALPGVRIAQPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS V L G+ I + +R +++ I E IDF D IE LNTV
Sbjct: 141 ARSAVNSLQGAFSARIHHLVEALTHLRIYVEAAIDFPDEE--IDFLSDGRIEAQ-LNTVV 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S + + + G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 198 SDL--------DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++RVSG + + K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRVSGAQAAEVARQLLG----KLPKPRYADYLPFTDS-DGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP H G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRIVALPGVRIAQPGEFSERAFLN 118
>gi|422854351|ref|ZP_16901015.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK160]
gi|325695846|gb|EGD37737.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK160]
Length = 479
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 176/339 (51%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + +SK +L +IVDP ++ +LDE +
Sbjct: 39 GEGAIGIVRLSGTDSFAIAQKI--FKGKNLSKVESHTLNYGHIVDPQNQEILDEVMLGAM 96
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 97 RSPKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARMAEPGEFTKRAFLNGRVDLTQAE 155
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL +LA VE ID+ E + +E+
Sbjct: 156 AVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNIDYPEYDDVEEMTT 215
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
+R + +E E + N+LNT
Sbjct: 216 QLMREKT----------------------------------------AEFEDLLSNLLNT 235
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
R G I +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 236 AR------RGKI-------------LREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDI 276
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 277 EGTTRDVIEEYVNIKGVPLKLIDTAGIR-ETDDLVEQIG 314
>gi|448514060|ref|XP_003867055.1| Mss1 protein [Candida orthopsilosis Co 90-125]
gi|380351393|emb|CCG21617.1| Mss1 protein [Candida orthopsilosis Co 90-125]
Length = 493
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 120/352 (34%), Positives = 173/352 (49%), Gaps = 82/352 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKP------RYASLRNIVDPVSEVVLDEGL 152
K ++V+R+SGP A Y K++K R A +R + ++LDE L
Sbjct: 30 AKSAIAVVRISGP--------QASYVYMKLTKTEAQPEHRVAKVRKLYSVQDSILLDEAL 81
Query: 153 CLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG------LRPAEPGEFSKRAFF 206
L+F P ++TG D E +HG A+I A+L ++ L +R AE GEFS +AF
Sbjct: 82 TLFFKSPRTYTGLDLLELHLHGGTAIIKAVLKSIRNLHDPERGKIIRQAEHGEFSHQAFV 141
Query: 207 NNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFS 266
N K DLT E + D+I AETE QR +L M G K + +WRQ ILE++A++ IDF
Sbjct: 142 NGKYDLTALEGISDMINAETESQRIASLASMSGQTKDSFVKWRQDILENVANLTTLIDFG 201
Query: 267 EDEIIE--DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFS 324
ED + D++ + V + + +L A + AY
Sbjct: 202 EDHDLSEIDSLFHDVGASISKLE---------------------------ADIRAY---- 230
Query: 325 EDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNF 384
L V+S V L+ GI+ ++G PN GKSS++N
Sbjct: 231 ---------LKNVKSSQVLLN-------------------GIQLTLLGPPNAGKSSILNT 262
Query: 385 LCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR-TTTSDIIETEG 435
L K +IV+ + GTTRDV++ LDIGGY V+L DTAG+R +T +D IE EG
Sbjct: 263 LSNKDAAIVSDVAGTTRDVLDIPLDIGGYKVVLGDTAGIRLSTEADQIEQEG 314
>gi|359399007|ref|ZP_09192015.1| tRNA modification GTPase TrmE [Novosphingobium pentaromativorans
US6-1]
gi|357599552|gb|EHJ61262.1| tRNA modification GTPase TrmE [Novosphingobium pentaromativorans
US6-1]
Length = 425
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/336 (32%), Positives = 162/336 (48%), Gaps = 74/336 (22%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
++V+RVSGP+ A+ ++A + PR AS R + D +LD L LWFP P+
Sbjct: 15 AAIAVLRVSGPEAGAAMTALAG----SIPSPRRASYRKLRDG-DGAILDHALVLWFPGPD 69
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
+ TGED EF +HG AV++A+ AL ++ LR A PGEF++RAF N ++DL + E L D
Sbjct: 70 TATGEDLAEFHLHGGRAVVSAVESALAQMLKLRRATPGEFTRRAFANGRIDLAEAEGLAD 129
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
L+ AETELQR R
Sbjct: 130 LLSAETELQR-------------------------------------------------R 140
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
S + G+ + +E+ + + A+VEA +DF +++ + D +
Sbjct: 141 SALAMADGAFSRQVEIWRD---------RVLAASAAVEAVLDFGDEDDVADLPEDF---- 187
Query: 341 VVQLHGSIEKHIELSNKC----GVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
L G + H+ELS R++ G + V+ G PN GKS+L N L + + +I +
Sbjct: 188 ---LKGLAKFHVELSQWLERPRAERLKDGFRVVLAGPPNAGKSTLFNALVEDEAAITAPL 244
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIE 432
GTTRDV+ + + IGG P + DTAGLR T D IE
Sbjct: 245 AGTTRDVLTRAVAIGGMPFVFADTAGLRDETGDEIE 280
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 134/292 (45%), Gaps = 77/292 (26%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ +TIFALSSG ++V+RVSGP+ A+ ++A +P PR AS R + D
Sbjct: 1 MTDTIFALSSGSPPAAIAVLRVSGPEAGAAMTALAG----SIPSPRRASYRKLRDG-DGA 55
Query: 86 VLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSE 145
+LD L LWFP GPDT
Sbjct: 56 ILDHALVLWFP-------------GPDTA------------------------------- 71
Query: 146 VVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAF 205
TGED EF +HG AV++A+ AL ++ LR A PGEF++RAF
Sbjct: 72 -----------------TGEDLAEFHLHGGRAVVSAVESALAQMLKLRRATPGEFTRRAF 114
Query: 206 FNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDF 265
N ++DL + E L DL+ AETELQR+ AL G + WR +L + A+VEA +DF
Sbjct: 115 ANGRIDLAEAEGLADLLSAETELQRRSALAMADGAFSRQVEIWRDRVLAASAAVEAVLDF 174
Query: 266 SEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKC----GVRIRSGIKSVIC 313
+++ + D + L G + H+ELS R++ G + V+
Sbjct: 175 GDEDDVADLPEDF-------LKGLAKFHVELSQWLERPRAERLKDGFRVVLA 219
>gi|68472595|ref|XP_719616.1| potential mitochondrial tRNA modification protein [Candida albicans
SC5314]
gi|68472852|ref|XP_719491.1| potential mitochondrial tRNA modification protein [Candida albicans
SC5314]
gi|46441310|gb|EAL00608.1| potential mitochondrial tRNA modification protein [Candida albicans
SC5314]
gi|46441440|gb|EAL00737.1| potential mitochondrial tRNA modification protein [Candida albicans
SC5314]
Length = 529
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/353 (32%), Positives = 176/353 (49%), Gaps = 75/353 (21%)
Query: 97 RHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDP-----VSEVVLDEG 151
+ GK ++V+R+SGP + + K K R AS+R + P V LDE
Sbjct: 59 KFGKSAIAVVRISGPQSKYIYHKLTN--STKPPKNRIASVRKLYSPEPHSNKKSVFLDEA 116
Query: 152 LCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG------LRPAEPGEFSKRAF 205
L L+ P P ++TGED E +HG +A+I ++L ++ KL +R A+ GEFSK+AF
Sbjct: 117 LTLFLPGPKTYTGEDLLELHLHGGVAIIKSVLQSIKKLHDPNNGVIIRQADRGEFSKQAF 176
Query: 206 FNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDF 265
+N +LDLT+ E + D+I AETE QR +L G K + +WR I+ +A++ IDF
Sbjct: 177 YNGRLDLTELEGINDMINAETESQRLASLASSSGQTKIEFMKWRNEIINQMANLTMIIDF 236
Query: 266 SEDEIIE--DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDF 323
ED IE D ++ V+ + ++ I+ +
Sbjct: 237 GEDHDIEETDRMIRDVKENIAKIESEIKAY------------------------------ 266
Query: 324 SEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMN 383
L+ V+S + L+G I+ ++G PN GKSS++N
Sbjct: 267 ----------LSKVKSSQILLNG-------------------IQLALLGPPNAGKSSILN 297
Query: 384 FLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT-TTSDIIETEG 435
L K +IV+ I GTTRD+++ L+IGGY V++ DTAG+R+ +D IE EG
Sbjct: 298 ILANKDAAIVSEIAGTTRDILDIPLEIGGYKVVVGDTAGIRSFEEADSIEQEG 350
>gi|118387767|ref|XP_001026986.1| small GTP-binding protein domain containing protein [Tetrahymena
thermophila]
gi|89308756|gb|EAS06744.1| small GTP-binding protein domain containing protein [Tetrahymena
thermophila SB210]
Length = 550
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 122/368 (33%), Positives = 180/368 (48%), Gaps = 92/368 (25%)
Query: 100 KCGVSVIRVSGPDTLNALKSMACYPDQKVS---------------KPRYA---SLRNIVD 141
K GVS+IR+SG + L A + + Q+ K RYA L +++D
Sbjct: 37 KAGVSIIRISGSNCLQAGQMLVQNAQQRQLIKGMNNSQVQDYLNLKNRYAHFKKLYSLID 96
Query: 142 PV----------SEVV---LDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTK 188
P +++ +D+G+ ++F P S+TGED E +HGS A+ +L L++
Sbjct: 97 PTVSPQNQSFQKQDLIYQQIDQGIFMYFQGPKSYTGEDIVEMHIHGSRALQKKVLLELSQ 156
Query: 189 LPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEW 248
L R A+PGEF+KRA NNKLDL + E L DL+ +ETE QR ++ Q G Q
Sbjct: 157 LNNFRLADPGEFTKRAMINNKLDLLEVEGLADLLNSETESQRVQSTQQFLGKSSQ----- 211
Query: 249 RQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGI 308
I+ED +R+
Sbjct: 212 ---------------------ILEDWRFQLIRA--------------------------- 223
Query: 309 KSVICLASVEAYIDFSEDEI-IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK 367
LA EA+IDF D+ +E NIL + V Q+ I + + N+ G +R G+K
Sbjct: 224 -----LAHAEAFIDFESDQDDVEFNILGKTQENVQQVIKDINEQLSDRNR-GEILRDGMK 277
Query: 368 SVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT 427
I+G+PN GKS+L+N L +K I+IV+ IPGTTRD + L+I G+P++L DTAG+R T
Sbjct: 278 ISIIGKPNAGKSTLLNCLAKKDIAIVSEIPGTTRDALSVSLNISGFPILLYDTAGIR-QT 336
Query: 428 SDIIETEG 435
D+IE +G
Sbjct: 337 KDVIEEKG 344
>gi|422846735|ref|ZP_16893418.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK72]
gi|422862443|ref|ZP_16909075.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK408]
gi|325687543|gb|EGD29564.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK72]
gi|327474426|gb|EGF19832.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK408]
Length = 457
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 177/339 (52%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + ++K +L +I+DP ++ +LDE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKI--FKGKNLNKVESHTLNYGHIIDPQNQEILDEVMLGAM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL + + G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 RSPKTFTREDIIEINTHGGIAVTNEILQLVIR-EGARMAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL +LA VE ID+ E + +E+
Sbjct: 134 AVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNIDYPEYDDVEEMTT 193
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
+R + A EA + N+LNT
Sbjct: 194 QLMREKT-------------------------------AEFEALL---------SNLLNT 213
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
R G I +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 214 AR------RGKI-------------LREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 255 EGTTRDVIEEYVNIKGLPLKLIDTAGIR-ETDDLVEQIG 292
>gi|253753982|ref|YP_003027123.1| tRNA modification GTPase TrmE [Streptococcus suis P1/7]
gi|386578281|ref|YP_006074687.1| tRNA modification GTPase TrmE [Streptococcus suis GZ1]
gi|386580351|ref|YP_006076756.1| tRNA modification GTPase TrmE [Streptococcus suis JS14]
gi|386582365|ref|YP_006078769.1| tRNA modification GTPase TrmE [Streptococcus suis SS12]
gi|386588551|ref|YP_006084952.1| tRNA modification GTPase TrmE [Streptococcus suis A7]
gi|251820228|emb|CAR46651.1| tRNA modification GTPase TrmE [Streptococcus suis P1/7]
gi|292558744|gb|ADE31745.1| tRNA modification GTPase TrmE [Streptococcus suis GZ1]
gi|319758543|gb|ADV70485.1| tRNA modification GTPase TrmE [Streptococcus suis JS14]
gi|353734511|gb|AER15521.1| tRNA modification GTPase TrmE [Streptococcus suis SS12]
gi|354985712|gb|AER44610.1| tRNA modification GTPase TrmE [Streptococcus suis A7]
Length = 457
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 118/338 (34%), Positives = 173/338 (51%), Gaps = 63/338 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYA-SLRNIVDPVSEVVLDEGLCLWFP 157
G+ + ++R+SG D A+ S + P ++ + + +DP + VLDE +
Sbjct: 17 GEGAIGIVRLSGTDAF-AIASTVFKGKDLATVPSHSLNYGHAIDPATGQVLDEVMIGAMR 75
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P +FT ED E HG IAV N IL L + G R AEPGEF+KRAF N ++DLTQ EA
Sbjct: 76 SPKTFTREDVIEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTKRAFLNGRVDLTQAEA 134
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ D+I+A+T+ A+ Q+ G+L QL ++ RQ ILN
Sbjct: 135 VMDVIRAKTDKAMHNAVRQLDGSLSQLINDTRQ-----------------------EILN 171
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
T LA VE ID+ E + +E+ V
Sbjct: 172 T-----------------------------------LAQVEVNIDYPEYDDVEEATTELV 196
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
R + +Q +E + + + G +R GI + I+G PNVGKSSL+N L +++ +IVT I
Sbjct: 197 REKTLQFQALLENLLRTARR-GKILREGIATAIIGRPNVGKSSLLNNLLREEKAIVTDIA 255
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 256 GTTRDVIEEYVNIKGVPLKLIDTAGIR-ETDDIVEKIG 292
>gi|146319108|ref|YP_001198820.1| tRNA modification GTPase TrmE [Streptococcus suis 05ZYH33]
gi|146321314|ref|YP_001201025.1| tRNA modification GTPase TrmE [Streptococcus suis 98HAH33]
gi|253752156|ref|YP_003025297.1| tRNA modification GTPase TrmE [Streptococcus suis SC84]
gi|166234827|sp|A4W2N6.1|MNME_STRS2 RecName: Full=tRNA modification GTPase MnmE
gi|166234829|sp|A4VWD1.1|MNME_STRSY RecName: Full=tRNA modification GTPase MnmE
gi|145689914|gb|ABP90420.1| Predicted GTPase [Streptococcus suis 05ZYH33]
gi|145692120|gb|ABP92625.1| Predicted GTPase [Streptococcus suis 98HAH33]
gi|251816445|emb|CAZ52081.1| tRNA modification GTPase TrmE [Streptococcus suis SC84]
Length = 457
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 118/338 (34%), Positives = 173/338 (51%), Gaps = 63/338 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYA-SLRNIVDPVSEVVLDEGLCLWFP 157
G+ + ++R+SG D A+ S + P ++ + + +DP + VLDE +
Sbjct: 17 GEGAIGIVRLSGTDAF-AIASTVFKGKDLATVPSHSLNYGHAIDPATGQVLDEVMIGAMR 75
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P +FT ED E HG IAV N IL L + G R AEPGEF+KRAF N ++DLTQ EA
Sbjct: 76 SPKTFTREDVIEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTKRAFLNGRVDLTQAEA 134
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ D+I+A+T+ A+ Q+ G+L QL ++ RQ ILN
Sbjct: 135 VMDVIRAKTDKAMHNAVRQLDGSLSQLINDTRQ-----------------------EILN 171
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
T LA VE ID+ E + +E+ V
Sbjct: 172 T-----------------------------------LAQVEVNIDYPEYDDVEEATTELV 196
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
R + +Q +E + + + G +R GI + I+G PNVGKSSL+N L +++ +IVT I
Sbjct: 197 REKTLQFQALLENLLRTARR-GKILREGIATAIIGRPNVGKSSLLNNLLREEKAIVTDIA 255
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 256 GTTRDVIEEYVNIKGVPLKLIDTAGIR-ETDDIVEKIG 292
>gi|315497189|ref|YP_004085993.1| tRNA modification gtpase trme [Asticcacaulis excentricus CB 48]
gi|315415201|gb|ADU11842.1| tRNA modification GTPase TrmE [Asticcacaulis excentricus CB 48]
Length = 446
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 120/338 (35%), Positives = 170/338 (50%), Gaps = 68/338 (20%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ GVSVIR+SGP ++++ ++ +PRYA+L ++ ++D+ L LWF
Sbjct: 15 QGRAGVSVIRISGPQAAQVVEALLG----RLPRPRYATLGHL--RYDGELIDQALVLWFK 68
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P+SFTGEDC EF +HGS AV+ + G L GLR AEPGEFS+RAF N KL
Sbjct: 69 GPSSFTGEDCAEFHIHGSRAVLERLYGVFRAL-GLRHAEPGEFSRRAFENGKL------- 120
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
DL QAE +L + SE ++
Sbjct: 121 --DLTQAEA-----------ISDLVEAESEAQR--------------------------- 140
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
R ++QL G +RI LA +EA +DF DE I +++ +
Sbjct: 141 --RQALMQLEGGFRDRYAQWRDALIRI---------LAHIEAIVDFP-DEDIPEHLSERI 188
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+ ++ L + I + + G +IR G + I+G+PN GKSSL N L Q +IVT I
Sbjct: 189 VADIITLKTEVGAAISDARR-GQQIREGYRIAIMGKPNAGKSSLFNALLQTDAAIVTPIA 247
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE + IG Y ++ DTAGLR T D++E+EG
Sbjct: 248 GTTRDVIESPIRIGPYAALIYDTAGLR-ETEDVVESEG 284
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 6/70 (8%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TIFAL+S G+ GVSVIR+SGP ++++ ++P+PRYA+L ++
Sbjct: 4 VKQTIFALASAQGRAGVSVIRISGPQAAQVVEALLG----RLPRPRYATLGHL--RYDGE 57
Query: 86 VLDEGLCLWF 95
++D+ L LWF
Sbjct: 58 LIDQALVLWF 67
>gi|317148818|ref|XP_001822938.2| cytokinesis protein sepA [Aspergillus oryzae RIB40]
Length = 2209
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 178/339 (52%), Gaps = 73/339 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSE----VVLDEG-LC 153
G+ ++V+RVSGP + +++ C P + +PR+A++R + DP E LD G L
Sbjct: 1674 GRAAIAVVRVSGPGCVRIYQAL-C-PKAALPRPRFAAVRTLFDPTREPSSSSALDAGALV 1731
Query: 154 LWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG----LRPAEPGEFSKRAFFNNK 209
L+FP PN+ TGED E +HG A++ ++L A++++ +R AEPGEF++RAF NN+
Sbjct: 1732 LYFPAPNTVTGEDVLELHLHGGPAIVKSVLTAISRVSQPDSLVRYAEPGEFTRRAFMNNR 1791
Query: 210 LDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDE 269
LDL Q EALGD + A+TE QR+ A+ L + Y +W
Sbjct: 1792 LDLPQIEALGDTLSADTEQQRRLAVRGASDALSRRYEQW--------------------- 1830
Query: 270 IIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEII 329
R Q++ G +E A IDF+ED+
Sbjct: 1831 ----------RQQLLYARGELE---------------------------ALIDFAEDQHF 1853
Query: 330 E---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLC 386
+ D ++ +V +QV L + HI+ ++K G +R GIK ++G PN GKSSL+N +
Sbjct: 1854 DESSDELVLSVAAQVQALRVQVGFHIQNASK-GELLRHGIKIALLGAPNAGKSSLLNQIV 1912
Query: 387 QKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425
K+ +IV++ GTTRD+++ +D+ G+ L D AG+R+
Sbjct: 1913 GKEAAIVSTEEGTTRDIVDVGVDLSGWYCKLGDMAGIRS 1951
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 139/290 (47%), Gaps = 68/290 (23%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPV----S 83
+TI+ALS+ G+ ++V+RVSGP + +++ C P +P+PR+A++R + DP S
Sbjct: 1664 STIYALSTASGRAAIAVVRVSGPGCVRIYQAL-C-PKAALPRPRFAAVRTLFDPTREPSS 1721
Query: 84 KVVLDEG-LCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDP 142
LD G L L+FP V+G D L + P A +++++
Sbjct: 1722 SSALDAGALVLYFPAPNT-------VTGEDVLEL--HLHGGP---------AIVKSVLTA 1763
Query: 143 VSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSK 202
+S V + L + +P FT +
Sbjct: 1764 ISRVSQPDSLVR-YAEPGEFT--------------------------------------R 1784
Query: 203 RAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAY 262
RAF NN+LDL Q EALGD + A+TE QR+ A+ L + Y +WRQ +L + +EA
Sbjct: 1785 RAFMNNRLDLPQIEALGDTLSADTEQQRRLAVRGASDALSRRYEQWRQQLLYARGELEAL 1844
Query: 263 IDFSEDEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK 309
IDF+ED+ + D ++ +V +QV L + HI+ ++K G +R GIK
Sbjct: 1845 IDFAEDQHFDESSDELVLSVAAQVQALRVQVGFHIQNASK-GELLRHGIK 1893
>gi|30248403|ref|NP_840473.1| tRNA modification GTPase TrmE [Nitrosomonas europaea ATCC 19718]
gi|46577435|sp|Q82XA1.1|MNME_NITEU RecName: Full=tRNA modification GTPase MnmE
gi|30138289|emb|CAD84297.1| GTP-binding protein (HSR1-related):tRNA modification GTPase TrmE
[Nitrosomonas europaea ATCC 19718]
Length = 451
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 179/339 (52%), Gaps = 71/339 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++R+SG + L+S+A K+ PR+A L + +D S+++ D+G+ L+FP
Sbjct: 15 GRGGIGIVRISGTN----LESLARGILGKLPDPRHAGLFSFLDQNSQII-DQGIALYFPS 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+S+TGE+ E Q HG AV+N +L +L G R AEPGEF+ RAF N+KLDL Q E +
Sbjct: 70 PHSYTGEEVLELQGHGGPAVMNLLLDRCLQL-GARLAEPGEFTLRAFLNDKLDLAQAEGV 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A T N
Sbjct: 129 ADLIAASTA-------------------------------------------------NA 139
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R V LHG I ++ S + + L VEA +DF E+EI + L +
Sbjct: 140 ARCAVRSLHGEFSSTIH-------QLVSALIDLRVL--VEATLDFPEEEI---DFLQSAH 187
Query: 339 S--QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+ Q+ + +E+ + ++++ G ++ GIK V+ G+PNVGKSSL+N L +++IVT I
Sbjct: 188 AAEQLATIRAKLEQ-VLVASRQGNLLQEGIKVVLAGQPNVGKSSLLNRLAGDEVAIVTDI 246
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
PGTTRD + + ++I G P+ L+DTAGLR TSDI+E G
Sbjct: 247 PGTTRDTVRQSIEIEGIPLHLIDTAGLR-ETSDIVEQHG 284
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 85/167 (50%), Gaps = 11/167 (6%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A+++ G+ G+ ++R+SG + L+S+A K+P PR+A L + +D S+++
Sbjct: 5 DTIAAIATPPGRGGIGIVRISGTN----LESLARGILGKLPDPRHAGLFSFLDQNSQII- 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPV 143
D+G+ L+FP H G V+ + GP +N L ++++P +LR ++
Sbjct: 60 DQGIALYFPSPHSYTGEEVLELQGHGGPAVMNLLLDRCLQLGARLAEPGEFTLRAFLNDK 119
Query: 144 SEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSI-AVINAILGALTKL 189
++ EG+ ++ C +HG + I+ ++ AL L
Sbjct: 120 LDLAQAEGVADLI-AASTANAARCAVRSLHGEFSSTIHQLVSALIDL 165
>gi|422823497|ref|ZP_16871685.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK405]
gi|422865417|ref|ZP_16912042.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK1058]
gi|324992824|gb|EGC24744.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK405]
gi|327489811|gb|EGF21601.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK1058]
Length = 457
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 175/339 (51%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + +S+ +L +IVDP ++ +LDE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKI--FKGKNLSEVESHTLNYGHIVDPQNQEILDEVMLGAM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 RSPKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARMAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL +LA VE ID+ E + +E+
Sbjct: 134 AVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNIDYPEYDDVEEMTT 193
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
+R + + E + N+LNT
Sbjct: 194 QLMREKTAEF----------------------------------------ETLLSNLLNT 213
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
R G I +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 214 AR------RGKI-------------LREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 255 EGTTRDVIEEYVNIKGVPLKLIDTAGIR-ETDDLVEQIG 292
>gi|229524906|ref|ZP_04414311.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae bv.
albensis VL426]
gi|229338487|gb|EEO03504.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae bv.
albensis VL426]
Length = 453
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 174/344 (50%), Gaps = 80/344 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVS----KPRYASLRNIVDPVSEVVLDEGLCL 154
G+ GV +IRVSGP +A + Q V+ +PRYA D + LD+G+ L
Sbjct: 14 GRGGVGIIRVSGP--------LAAHVAQTVTGRTLRPRYAEYSPFTDEDGQQ-LDQGIAL 64
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
+FP P+SFTGED E Q HG V++ ++ + ++ G+RPA PGEFS+RAF N+K+DLTQ
Sbjct: 65 FFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDLTQ 124
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
EA+ DLI A +E
Sbjct: 125 AEAIADLIDASSE----------------------------------------------- 137
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IED 331
+S + L G K RI + ++S+I L VEA IDF E+EI + D
Sbjct: 138 --QAAKSALQSLQGEFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLAD 185
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
++ ++ ++ + +N+ G +R G+K VI G PN GKSSL+N L K+ +
Sbjct: 186 GKVSADLQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IVT I GTTRDV+ +H+ I G P+ ++DTAGLR SD +E G
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR-DASDAVEKIG 284
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + +++ + +PRYA D + L
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTG----RTLRPRYAEYSPFTDEDGQ-QL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALFFPNPHSFTGEDVLELQG 82
>gi|125718082|ref|YP_001035215.1| tRNA modification GTPase TrmE [Streptococcus sanguinis SK36]
gi|166234828|sp|A3CNB0.1|MNME_STRSV RecName: Full=tRNA modification GTPase MnmE
gi|125497999|gb|ABN44665.1| tRNA modification GTPase, possibly iron-binding, putative
[Streptococcus sanguinis SK36]
Length = 457
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 176/339 (51%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + +S+ +L +IVDP ++ +LDE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKI--FKGKNLSEVESHTLNYGHIVDPQNQEILDEVMLGAM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 RSPKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARMAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL +LA VE ID+ E + +E+
Sbjct: 134 AVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNIDYPEYDDVEEMTT 193
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
+R + A EA + N+LNT
Sbjct: 194 QLMREKT-------------------------------AEFEALL---------SNLLNT 213
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
R G I +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 214 AR------RGKI-------------LREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 255 EGTTRDVIEEYVNIKGLPLKLIDTAGIR-ETDDLVEQIG 292
>gi|407794079|ref|ZP_11141108.1| tRNA modification GTPase TrmE [Idiomarina xiamenensis 10-D-4]
gi|407213503|gb|EKE83359.1| tRNA modification GTPase TrmE [Idiomarina xiamenensis 10-D-4]
Length = 456
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 116/335 (34%), Positives = 172/335 (51%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG +A + +A KPRYA D ++ LDEG+ L+FP
Sbjct: 17 GRGGVGIVRVSG----DAARQVAEALLGHCPKPRYAEYLPFRDSQGQL-LDEGIALFFPG 71
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +I+ I+ A +P +R A+PGEFS+RAF N+KLDLTQ EA+
Sbjct: 72 PNSFTGEDVLELQGHGGPVLIDMIIKAALAIPSVRLAKPGEFSERAFMNDKLDLTQAEAI 131
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI +E Q +L S++ + D++++
Sbjct: 132 ADLIDTTSE----------------------QAARAALQSLKGEFSYKIDQLVD------ 163
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI---IEDNILN 335
V+QL VEA IDF ++EI + + +
Sbjct: 164 ---AVIQLR---------------------------MYVEAAIDFPDEEIDFLSDGKVAS 193
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+ + + QLH I+L + G +R G++ VI G PN GKSSL+N L ++ +IVT+
Sbjct: 194 DLDAIIDQLH-----EIDLQARQGTLMRDGMRVVIAGRPNAGKSSLLNALAGRESAIVTA 248
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 249 IAGTTRDVLREHIQIEGMPLHIIDTAGLRDSPDEV 283
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 23 HLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPV 82
H + ++I A ++ G+ GV ++RVSG +A + +A PKPRYA D
Sbjct: 2 HDSSNDSIVAQATPPGRGGVGIVRVSG----DAARQVAEALLGHCPKPRYAEYLPFRDSQ 57
Query: 83 SKVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLNA-LKSMACYPDQKVSKPRYASLR 137
+ +LDEG+ L+FP + G V+ + GP ++ +K+ P +++KP S R
Sbjct: 58 GQ-LLDEGIALFFPGPNSFTGEDVLELQGHGGPVLIDMIIKAALAIPSVRLAKPGEFSER 116
Query: 138 NIVD 141
++
Sbjct: 117 AFMN 120
>gi|444921611|ref|ZP_21241446.1| tRNA modification GTPase MnmE [Wohlfahrtiimonas chitiniclastica
SH04]
gi|444507338|gb|ELV07515.1| tRNA modification GTPase MnmE [Wohlfahrtiimonas chitiniclastica
SH04]
Length = 441
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/334 (34%), Positives = 175/334 (52%), Gaps = 66/334 (19%)
Query: 102 GVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNS 161
GV ++R+SGP++ +A+ + + V PR+A+ D EV +DEGL ++F PNS
Sbjct: 17 GVGIVRISGPES-HAIGARIAKKEALV--PRHATFTQFYDDNDEV-MDEGLVIYFKGPNS 72
Query: 162 FTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDL 221
FTGE+C E Q HG + V+N +L + L G PA+ GEF++RAF N KLDL Q EA+ DL
Sbjct: 73 FTGEECVELQGHGGLVVLNRLLKRVYAL-GAEPAKAGEFTERAFLNGKLDLVQAEAIHDL 131
Query: 222 IQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRS 281
I +++E Q + A++ + G S ++ VEA IDFSE++I
Sbjct: 132 IMSQSEAQAKAAMNSLSGQFSAKTSTINDALIHLRVYVEATIDFSEEDI----------- 180
Query: 282 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQV 341
DF I + N+L + +
Sbjct: 181 ----------------------------------------DF----ITDGNVLKRLDA-- 194
Query: 342 VQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTR 401
+ G I+ + +N+ G + G+ V+ G+PN GKSS++N L ++ +IVT I GTTR
Sbjct: 195 --VEGDIQALLASANQ-GKLLTDGVTVVLAGKPNAGKSSILNALSGEESAIVTDIAGTTR 251
Query: 402 DVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
D +++H+ I G P+ ++DTAGLR TT D+IE EG
Sbjct: 252 DTLKEHVVIHGLPLHIIDTAGLRETT-DVIEQEG 284
>gi|395788131|ref|ZP_10467707.1| tRNA modification GTPase mnmE [Bartonella birtlesii LL-WM9]
gi|395409913|gb|EJF76498.1| tRNA modification GTPase mnmE [Bartonella birtlesii LL-WM9]
Length = 435
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/329 (33%), Positives = 163/329 (49%), Gaps = 64/329 (19%)
Query: 102 GVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNS 161
GV+VIR+SGP +N +K++ + + K R+ N+ LD L ++FP P+S
Sbjct: 15 GVAVIRLSGPHVINIVKTLCGF----LPKARFMHYGNLT-ARDGSFLDSALTVFFPAPHS 69
Query: 162 FTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDL 221
FTGEDC EF +HG AV+N L L+ G R AE GEFS+RAF KLDL Q E L DL
Sbjct: 70 FTGEDCAEFHLHGGKAVVNRFLDELSTFAGCRMAEAGEFSRRAFMEGKLDLVQAEGLADL 129
Query: 222 IQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRS 281
I+AETE QR+ A+ G L LY +WR ++++ A +E +DF+++ + +++ + +
Sbjct: 130 IEAETESQRRLAIMGTSGRLTALYRDWRSKLMKARAFIEVELDFADETDVPNSVSDKIWK 189
Query: 282 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQV 341
V L S++KHI+ + + +R G++ VI A
Sbjct: 190 DVENLRTSLQKHIDEGERASI-LRDGLQIVIAGAPNSG---------------------- 226
Query: 342 VQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTR 401
+S I + + G+P ++IVT GTTR
Sbjct: 227 ---------------------KSSIMNRLAGKP---------------VAIVTDEAGTTR 250
Query: 402 DVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
D +E L +GG P+ L DTAG R T + I
Sbjct: 251 DALEIRLVLGGIPIFLTDTAGFRETENKI 279
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFA+SSG GV+VIR+SGP +N +K++ + +PK R+ N+ L
Sbjct: 2 DTIFAVSSGLLPSGVAVIRLSGPHVINIVKTLCGF----LPKARFMHYGNLT-ARDGSFL 56
Query: 88 DEGLCLWFP 96
D L ++FP
Sbjct: 57 DSALTVFFP 65
>gi|157964067|ref|YP_001504101.1| tRNA modification GTPase TrmE [Shewanella pealeana ATCC 700345]
gi|189036209|sp|A8HAH9.1|MNME_SHEPA RecName: Full=tRNA modification GTPase MnmE
gi|157849067|gb|ABV89566.1| tRNA modification GTPase TrmE [Shewanella pealeana ATCC 700345]
Length = 453
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 125/341 (36%), Positives = 176/341 (51%), Gaps = 74/341 (21%)
Query: 99 GKCGVSVIRVSGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ GV +IRVSG N A+ + P K RYA + D EV+ D+G+ L+F
Sbjct: 14 GRGGVGIIRVSGDLATNVAIAVLGHIP-----KTRYADYCDFKDEAGEVI-DQGIALFFK 67
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
PNSFTGED E Q HG V++ ++ + ++ GLR A+PGEFS++AF N+KLDLTQ EA
Sbjct: 68 GPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVDGLRIAKPGEFSEQAFMNDKLDLTQAEA 127
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DLI A +E + AL+ ++G +FS
Sbjct: 128 IADLIDATSEQAAKSALNSLQG------------------------EFS----------- 152
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI---IEDNIL 334
Q+H +EK L R+ VEA IDF ++E+ + I
Sbjct: 153 ------TQIHDLVEKVTNL------RLY-----------VEAAIDFPDEEVDFLSDGKIA 189
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
++ V +L G ++ S K G IR G+K VI G PN GKSSL+N L K+ +IVT
Sbjct: 190 ASLNGIVGKLDG-----VQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESAIVT 244
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I GTTRDV+ +H+ + G P+ ++DTAGLR T D +E G
Sbjct: 245 EIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTV-DTVEKIG 284
>gi|452846053|gb|EME47986.1| hypothetical protein DOTSEDRAFT_86341 [Dothistroma septosporum
NZE10]
Length = 524
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/344 (33%), Positives = 176/344 (51%), Gaps = 74/344 (21%)
Query: 103 VSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVS----EVVLDE-GLCLWFP 157
++VIRVSG L+ +S+ P +++ K R ++R++ +P E +LD L L+F
Sbjct: 3 IAVIRVSGSACLDVYRSLC--PGKRIPKSRTVAVRSLYEPGKNANKESMLDSSALVLYFS 60
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG-----LRPAEPGEFSKRAFFNNKLDL 212
P + TGED E VHG A++ A+LGA+ +R AEPGEF++RAF N++LDL
Sbjct: 61 APKTVTGEDILELHVHGGPAIVKAVLGAVANCSDRATRTIRYAEPGEFTRRAFMNSRLDL 120
Query: 213 TQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIE 272
TQ EALGD + A+TE QR+ ++ G L + Y +WRQ +L + +EA IDFSED+ +
Sbjct: 121 TQVEALGDTLSADTEQQRRLSIRGTTGALAKQYEQWRQQLLYARGELEALIDFSEDQHFD 180
Query: 273 DN---ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEII 329
++ + +V +Q L ++E H +
Sbjct: 181 ESPAELCASVAAQAHLLRVALEVHSQ---------------------------------- 206
Query: 330 EDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389
N VR G + +H GI ++G PN GKSSL+N + ++
Sbjct: 207 -----NAVR-------GELLRH-------------GISIALLGAPNAGKSSLLNRIIGRE 241
Query: 390 ISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIET 433
+IV+ GTTRD++E +D+GGY DTAGLR T+ E+
Sbjct: 242 AAIVSQQAGTTRDIVEIGVDLGGYFCRFGDTAGLRQATTSAHES 285
>gi|378828079|ref|YP_005190811.1| tRNA modification GTPase TrmE [Sinorhizobium fredii HH103]
gi|365181131|emb|CCE97986.1| tRNA modification GTPase TrmE [Sinorhizobium fredii HH103]
Length = 439
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 133/213 (62%), Gaps = 6/213 (2%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+VIR+SGP T + + + C + +PR A+LR I E+ LD GL ++FP P
Sbjct: 17 AGVAVIRISGPATADVIGRL-C---GALPQPRRAALRTIRTRNGEI-LDSGLVIYFPGPA 71
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDCCE QVHG AV++AIL AL GLR AE GEFS+RAF N KLDL + E L D
Sbjct: 72 SFTGEDCCELQVHGGWAVVHAILDALAGFEGLRHAEAGEFSRRAFQNGKLDLVEIEGLAD 131
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI AETE+QR+ A+ Q G LY W + + + A +EA +DF++++ I ++ T+
Sbjct: 132 LITAETEMQRRLAIEQSGGGQSALYQGWARRLTHARAMIEAELDFADEDDIPGSVSETIW 191
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
+ + +L IE H++ + + IR G+K VI
Sbjct: 192 TDMAKLAAEIEAHVDQAGLAEI-IRDGLKIVIA 223
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 80/121 (66%), Gaps = 2/121 (1%)
Query: 315 ASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEP 374
A +EA +DF++++ I ++ T+ + + +L IE H++ + + IR G+K VI GEP
Sbjct: 168 AMIEAELDFADEDDIPGSVSETIWTDMAKLAAEIEAHVDQAGLAEI-IRDGLKIVIAGEP 226
Query: 375 NVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETE 434
N GKSSL+N L ++ I+IVT I GTTRDV+ L + G+ V L DTAGLR T +++E E
Sbjct: 227 NAGKSSLLNALAKRDIAIVTEIAGTTRDVLSVDLSLAGFSVKLYDTAGLR-ETDELVERE 285
Query: 435 G 435
G
Sbjct: 286 G 286
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 5/73 (6%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
+ I +TI+ALSSG GV+VIR+SGP T + + + C +P+PR A+LR I
Sbjct: 1 MQITDTIYALSSGALPAGVAVIRISGPATADVIGRL-C---GALPQPRRAALRTIRTRNG 56
Query: 84 KVVLDEGLCLWFP 96
+ +LD GL ++FP
Sbjct: 57 E-ILDSGLVIYFP 68
>gi|422848608|ref|ZP_16895284.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK115]
gi|325689629|gb|EGD31633.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK115]
Length = 457
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 176/339 (51%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + +SK +L +IVDP ++ +LDE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKI--FKGKNLSKVASHTLNYGHIVDPQNQEILDEVMLGAM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 RSPKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARMAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + R+ IL +LA VE ID+ E + +E+
Sbjct: 134 AVMDIIRAKTDKAMNNAVKQLDGSLSDLINNTRREILNTLAQVEVNIDYPEYDDVEEMTT 193
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
+R + A EA + N+LNT
Sbjct: 194 QLMREKT-------------------------------AEFEALL---------SNLLNT 213
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
R G I +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 214 AR------RGKI-------------LREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 255 EGTTRDVIEEYVNIKGVPLKLIDTAGIR-ETDDLVEQIG 292
>gi|205422392|sp|Q0AE55.2|MNME_NITEC RecName: Full=tRNA modification GTPase MnmE
Length = 451
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/339 (35%), Positives = 171/339 (50%), Gaps = 71/339 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++R+SG + L+ +A K+ PR+A L N +D ++V+ D+G+ L+FP
Sbjct: 15 GRGGIGIVRISGTN----LEQLAQTILGKLPDPRHAGLFNFLDQNNQVI-DQGIVLYFPS 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNS+TGED E HG AV+N +L +L G R AEPGEF+ RAF N KLDL Q E +
Sbjct: 70 PNSYTGEDVLELHGHGGPAVMNLLLTRCLQL-GARLAEPGEFTLRAFLNEKLDLAQAEGV 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL IE + N
Sbjct: 129 ADL-------------------------------------------------IEASTANA 139
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R V LHG I + +R VEA +DF E+EI + L +
Sbjct: 140 ARCAVRSLHGEFSSAIHQLVSALIDLR---------VLVEATLDFPEEEI---DFLQSAH 187
Query: 339 S--QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+ Q+ + +E+ + S + G ++ GIK V+ G+PNVGKSSL+N L +I+IVT I
Sbjct: 188 AVEQLASIQTKLEQVLSASRR-GNLLQEGIKVVLTGQPNVGKSSLLNRLAGDEIAIVTEI 246
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
PGTTRD I + ++I G P+ L+DTAGLR TSDI+E G
Sbjct: 247 PGTTRDTIRQSIEIEGIPLHLIDTAGLR-ETSDIVEQHG 284
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 86/167 (51%), Gaps = 11/167 (6%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A+++ G+ G+ ++R+SG + L+ +A K+P PR+A L N +D ++V+
Sbjct: 5 DTIAAIATPPGRGGIGIVRISGTN----LEQLAQTILGKLPDPRHAGLFNFLDQNNQVI- 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPV 143
D+G+ L+FP + G V+ + GP +N L + ++++P +LR ++
Sbjct: 60 DQGIVLYFPSPNSYTGEDVLELHGHGGPAVMNLLLTRCLQLGARLAEPGEFTLRAFLNEK 119
Query: 144 SEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSI-AVINAILGALTKL 189
++ EG+ + ++ C +HG + I+ ++ AL L
Sbjct: 120 LDLAQAEGVADLI-EASTANAARCAVRSLHGEFSSAIHQLVSALIDL 165
>gi|260072625|gb|ACX30523.1| tRNA modification GTPase [uncultured SUP05 cluster bacterium]
Length = 447
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 124/347 (35%), Positives = 171/347 (49%), Gaps = 71/347 (20%)
Query: 91 LCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDE 150
+C G+ G+ ++RVSG + K M + V KPRYA + + V +D+
Sbjct: 8 ICALASSTGQGGIGIVRVSGARCIEIAKKMLGH----VPKPRYAHYGSFFNQ-DGVEIDK 62
Query: 151 GLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKL 210
G+ L+FP PNSFTGED EFQ HG I V+ ++L + L G AEPGEFSKRAF N K+
Sbjct: 63 GVALFFPAPNSFTGEDVLEFQGHGGILVMRSLLESAMAL-GSIAAEPGEFSKRAFLNGKM 121
Query: 211 DLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEI 270
DL Q EA+ DLI A +E
Sbjct: 122 DLLQAEAVADLIDASSE------------------------------------------- 138
Query: 271 IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIE 330
+ RS + L G + K + +R VEA IDFS++EI
Sbjct: 139 ------QSARSALRSLSGEFSDQVNALTKALIELR---------VFVEATIDFSDEEI-- 181
Query: 331 DNILNT--VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQK 388
+ LN+ V +V + SIE I S + G +R G+ VI G+PN GKSSL+N L Q+
Sbjct: 182 -DFLNSEGVGLKVAHIKESIES-ILTSAEQGAILREGLTVVIAGKPNAGKSSLLNALTQR 239
Query: 389 QISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
+IVT I GTTRDV+++ + + G P+ ++DTAGL + D IE EG
Sbjct: 240 SSAIVTDIAGTTRDVLKETIHVNGMPLNIIDTAGLH-VSEDKIEQEG 285
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
+ TI AL+S G+ G+ ++RVSG + K M + VPKPRYA + + V
Sbjct: 5 ETTICALASSTGQGGIGIVRVSGARCIEIAKKMLGH----VPKPRYAHYGSFFNQ-DGVE 59
Query: 87 LDEGLCLWFPR------------HGKCGVSVIRVSGPDTLNALKSMACYPDQ 126
+D+G+ L+FP G G+ V+R S ++ AL S+A P +
Sbjct: 60 IDKGVALFFPAPNSFTGEDVLEFQGHGGILVMR-SLLESAMALGSIAAEPGE 110
>gi|418464978|ref|ZP_13035917.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|359756933|gb|EHK91090.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 451
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/335 (34%), Positives = 169/335 (50%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSE---VVLDEGLCLW 155
G+ G+ ++RVSGP + +++ K KPR A P E VLD+G+ L+
Sbjct: 13 GRGGIGILRVSGPKAVEVAQAVLG----KCPKPRMADYL----PFKEGDGTVLDQGIALY 64
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
F PNSFTGED E Q HG V++ +L + ++ G+R A PGEFS++AF N+KLDL Q
Sbjct: 65 FKGPNSFTGEDVLELQGHGGQVVLDLLLKRILRIEGIRLARPGEFSEQAFLNDKLDLAQA 124
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
EA+ DLI A +E + AL ++G ++ ++ VEA IDF ++EI
Sbjct: 125 EAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEEI----- 179
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILN 335
+ +E Y+ ++II L+
Sbjct: 180 ----------------------------------DFLADGKIEGYL----NDIIAQ--LD 199
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
VR++ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 200 KVRAEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 244
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ + G P+ ++DTAGLR T ++
Sbjct: 245 IAGTTRDVLREHIHLDGMPLHIIDTAGLRDATDEV 279
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP + +++ K PKPR A +
Sbjct: 1 MKETIVAQATAPGRGGIGILRVSGPKAVEVAQAVLG----KCPKPRMADYLPFKEG-DGT 55
Query: 86 VLDEGLCLWF 95
VLD+G+ L+F
Sbjct: 56 VLDQGIALYF 65
>gi|422870848|ref|ZP_16917341.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK1087]
gi|328946229|gb|EGG40373.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK1087]
Length = 479
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 175/339 (51%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + ++K +L +IVDP ++ +LDE +
Sbjct: 39 GEGAIGIVRLSGTDSFAIAQKI--FKGKNLNKVESHTLNYGHIVDPQNQEILDEVMLGAM 96
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 97 HSPKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARMAEPGEFTKRAFLNGRVDLTQAE 155
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL +LA VE ID+ E + +E+
Sbjct: 156 AVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNIDYPEYDDVEEMTT 215
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
+R + A EA + N+LNT
Sbjct: 216 QLMREKT-------------------------------AEFEALL---------SNLLNT 235
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
R G +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 236 ARR-------------------GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDI 276
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 277 EGTTRDVIEEYVNIKGVPLKLIDTAGIR-ETDDLVEQIG 314
>gi|114332120|ref|YP_748342.1| tRNA modification GTPase TrmE [Nitrosomonas eutropha C91]
gi|114309134|gb|ABI60377.1| tRNA modification GTPase trmE [Nitrosomonas eutropha C91]
Length = 459
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/339 (35%), Positives = 171/339 (50%), Gaps = 71/339 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++R+SG + L+ +A K+ PR+A L N +D ++V+ D+G+ L+FP
Sbjct: 23 GRGGIGIVRISGTN----LEQLAQTILGKLPDPRHAGLFNFLDQNNQVI-DQGIVLYFPS 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNS+TGED E HG AV+N +L +L G R AEPGEF+ RAF N KLDL Q E +
Sbjct: 78 PNSYTGEDVLELHGHGGPAVMNLLLTRCLQL-GARLAEPGEFTLRAFLNEKLDLAQAEGV 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL IE + N
Sbjct: 137 ADL-------------------------------------------------IEASTANA 147
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R V LHG I + +R VEA +DF E+EI + L +
Sbjct: 148 ARCAVRSLHGEFSSAIHQLVSALIDLR---------VLVEATLDFPEEEI---DFLQSAH 195
Query: 339 S--QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+ Q+ + +E+ + S + G ++ GIK V+ G+PNVGKSSL+N L +I+IVT I
Sbjct: 196 AVEQLASIQTKLEQVLSASRR-GNLLQEGIKVVLTGQPNVGKSSLLNRLAGDEIAIVTEI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
PGTTRD I + ++I G P+ L+DTAGLR TSDI+E G
Sbjct: 255 PGTTRDTIRQSIEIEGIPLHLIDTAGLR-ETSDIVEQHG 292
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 86/167 (51%), Gaps = 11/167 (6%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A+++ G+ G+ ++R+SG + L+ +A K+P PR+A L N +D ++V+
Sbjct: 13 DTIAAIATPPGRGGIGIVRISGTN----LEQLAQTILGKLPDPRHAGLFNFLDQNNQVI- 67
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPV 143
D+G+ L+FP + G V+ + GP +N L + ++++P +LR ++
Sbjct: 68 DQGIVLYFPSPNSYTGEDVLELHGHGGPAVMNLLLTRCLQLGARLAEPGEFTLRAFLNEK 127
Query: 144 SEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSI-AVINAILGALTKL 189
++ EG+ + ++ C +HG + I+ ++ AL L
Sbjct: 128 LDLAQAEGVADLI-EASTANAARCAVRSLHGEFSSAIHQLVSALIDL 173
>gi|384423364|ref|YP_005632722.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
LMA3984-4]
gi|327482917|gb|AEA77324.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
LMA3984-4]
Length = 453
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 174/344 (50%), Gaps = 80/344 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVS----KPRYASLRNIVDPVSEVVLDEGLCL 154
G+ GV +IRVSGP +A + Q V+ +PRYA D + LD+G+ L
Sbjct: 14 GRSGVGIIRVSGP--------LAAHVAQTVTGRTLRPRYAEYLPFTDEDGQQ-LDQGIAL 64
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
+FP P+SFTGED E Q HG V++ ++ + ++ G+RPA PGEFS+RAF N+K+DLTQ
Sbjct: 65 FFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDLTQ 124
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
EA+ DLI A +E
Sbjct: 125 AEAIADLIDASSE----------------------------------------------- 137
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IED 331
+S + L G K RI + ++S+I L VEA IDF E+EI + D
Sbjct: 138 --QAAKSALQSLQGEFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLAD 185
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
++ ++ ++ + +N+ G +R G+K VI G PN GKSSL+N L K+ +
Sbjct: 186 GKVSADLQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IVT I GTTRDV+ +H+ I G P+ ++DTAGLR SD +E G
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR-DASDAVEKIG 284
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + +++ + +PRYA D + L
Sbjct: 4 DTIVAQATAPGRSGVGIIRVSGPLAAHVAQTVTG----RTLRPRYAEYLPFTDEDGQ-QL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALFFPNPHSFTGEDVLELQG 82
>gi|339481913|ref|YP_004693699.1| tRNA modification GTPase mnmE [Nitrosomonas sp. Is79A3]
gi|338804058|gb|AEJ00300.1| tRNA modification GTPase mnmE [Nitrosomonas sp. Is79A3]
Length = 451
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/337 (35%), Positives = 171/337 (50%), Gaps = 67/337 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK G+ VIR+SG + LK +A + +PRYASLR +D +++ D+G+ L+FP
Sbjct: 15 GKGGIGVIRISGRN----LKHLAETLLGNLPEPRYASLRKFLDTDGQII-DQGIALYFPA 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNS+TGED E Q HG AV+N +L G R A+PGEF+ RA+ NNK+DL Q E++
Sbjct: 70 PNSYTGEDILELQGHGGPAVMNLLLNQCLS-AGARLAQPGEFTLRAYLNNKIDLIQAESV 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
IIE +
Sbjct: 129 A-------------------------------------------------AIIEASTYEA 139
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R + L G IE + +R +EA +DF EDEI +L ++
Sbjct: 140 ARCAINSLQGQFSARIEELVSLLITLR---------MLIEAILDFPEDEIDNLQVLQ-IK 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ +H +E+ I + + G ++ GIK V+VG PNVGKSSL+N L + +IVT IPG
Sbjct: 190 ERLNDVHAQLEQ-IFAAARQGNLLQEGIKIVLVGAPNVGKSSLLNQLVEDDAAIVTDIPG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD I++ + I G P+ ++DTAGLR TSD++E +G
Sbjct: 249 TTRDTIQRTIAIAGVPIHIIDTAGLR-ETSDVVEQKG 284
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 106/228 (46%), Gaps = 29/228 (12%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+ I A+++ GK G+ VIR+SG + LK +A +P+PRYASLR +D +++
Sbjct: 5 DIIAAIATPPGKGGIGVIRISGRN----LKHLAETLLGNLPEPRYASLRKFLDTDGQII- 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPV 143
D+G+ L+FP + G ++ + GP +N L + ++++P +LR ++
Sbjct: 60 DQGIALYFPAPNSYTGEDILELQGHGGPAVMNLLLNQCLSAGARLAQPGEFTLRAYLNNK 119
Query: 144 SEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSI-AVINAILGALTKLPGLRPAEPGEFSK 202
+++ E + + +++ C + G A I ++ L L
Sbjct: 120 IDLIQAESVAAII-EASTYEAARCAINSLQGQFSARIEELVSLLITL------------- 165
Query: 203 RAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQ 250
R LD + E D +Q LQ ++ L+ + L+Q+++ RQ
Sbjct: 166 RMLIEAILDFPEDEI--DNLQV---LQIKERLNDVHAQLEQIFAAARQ 208
>gi|304398073|ref|ZP_07379948.1| tRNA modification GTPase TrmE [Pantoea sp. aB]
gi|440757783|ref|ZP_20936964.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pantoea agglomerans
299R]
gi|304354359|gb|EFM18731.1| tRNA modification GTPase TrmE [Pantoea sp. aB]
gi|436428547|gb|ELP26203.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pantoea agglomerans
299R]
Length = 454
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 164/334 (49%), Gaps = 69/334 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + + K+ KPRYA D V LD+G+ LWFP
Sbjct: 15 GRGGVGILRVSGAQAAEVARQLLG----KLPKPRYADYLPFTDSDGSV-LDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRIVALPGVRIAQPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS V L G+ I + +R VEA IDF ++EI + L+ R
Sbjct: 141 ARSAVNSLQGAFSTRINHLVEALTHLR---------IYVEAAIDFPDEEI---DFLSDGR 188
Query: 339 --SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+Q+ + G ++ + + G +R G+K VI G PN GKSSL+N L + +IVT I
Sbjct: 189 IEAQLNTVIGDLDA-VRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTDI 247
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 248 AGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++RVSG + + K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRVSGAQAAEVARQLLG----KLPKPRYADYLPFTDS-DGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVALPGVRIAQPGEFSERAFLN 118
>gi|326797440|ref|YP_004315260.1| tRNA modification GTPase mnmE [Marinomonas mediterranea MMB-1]
gi|326548204|gb|ADZ93424.1| tRNA modification GTPase mnmE [Marinomonas mediterranea MMB-1]
Length = 459
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 170/332 (51%), Gaps = 66/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IR+SGP +L+ K++ + KPRYA D E LD G+ L+FP
Sbjct: 21 GRGGVGIIRLSGPKSLDIAKAIIGFD----PKPRYAHYVPFKDDNDEQ-LDMGIALYFPG 75
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ ++ T L G R A PGEFS+RAF N+K+DLTQ EA+
Sbjct: 76 PNSFTGEDVFELQGHGGPVILDMLMTRCTAL-GARLARPGEFSERAFLNDKMDLTQAEAI 134
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI + +E + AL ++G + +E + ++ VEA IDF E+EI D I +
Sbjct: 135 ADLIDSSSEQAAKCALRSLQGAFSKRVTELVEALIHLRIYVEAAIDFPEEEI--DFIGD- 191
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G + +E G++I+ LN V
Sbjct: 192 ---------GKVAAELE-----GIQIK----------------------------LNAVL 209
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ Q G +R G+ VI G PN GKSSL+N L K +IVT+I G
Sbjct: 210 KEANQ---------------GALLREGMNVVIAGRPNAGKSSLLNTLSGKDSAIVTNIAG 254
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ + G P+ ++DTAGLR + ++
Sbjct: 255 TTRDVLREHIHLDGMPLHIIDTAGLRDSPDEV 286
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 9/119 (7%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
++TI A ++ G+ GV +IR+SGP +L+ K++ + PKPRYA D +
Sbjct: 10 QDTIAAQATAPGRGGVGIIRLSGPKSLDIAKAIIGFD----PKPRYAHYVPFKDDNDE-Q 64
Query: 87 LDEGLCLWFPR-HGKCGVSVIRV---SGPDTLNALKSMACYPDQKVSKPRYASLRNIVD 141
LD G+ L+FP + G V + GP L+ L + ++++P S R ++
Sbjct: 65 LDMGIALYFPGPNSFTGEDVFELQGHGGPVILDMLMTRCTALGARLARPGEFSERAFLN 123
>gi|251791873|ref|YP_003006593.1| tRNA modification GTPase TrmE [Aggregatibacter aphrophilus NJ8700]
gi|422336963|ref|ZP_16417935.1| tRNA modification GTPase mnmE [Aggregatibacter aphrophilus F0387]
gi|247533260|gb|ACS96506.1| tRNA modification GTPase TrmE [Aggregatibacter aphrophilus NJ8700]
gi|353345515|gb|EHB89806.1| tRNA modification GTPase mnmE [Aggregatibacter aphrophilus F0387]
Length = 451
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/332 (33%), Positives = 171/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++RVSGP+ ++ +++ K KPR A D +LD+G+ L+F
Sbjct: 13 GRGGIGILRVSGPNAIDVAQAVLG----KCPKPRMADYLPFKDE-DGTLLDQGIALYFKS 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L + ++ G+R A PGEFS++AF N+KLDL Q EA+
Sbjct: 68 PNSFTGEDVLELQGHGGQVVLDLLLKRILRIDGIRLARPGEFSEQAFLNDKLDLAQAEAI 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G ++ ++ VEA IDF ++EI
Sbjct: 128 ADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEEI-------- 179
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+ +E+Y+ ++II L+ VR
Sbjct: 180 -------------------------------DFLADGKIESYL----NDIIAQ--LDGVR 202
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q GSI ++ G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 203 AEAKQ--GSI-------------LQEGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 247
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ + G P+ ++DTAGLR T ++
Sbjct: 248 TTRDVLREHIHLDGMPLHIIDTAGLREATDEV 279
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP+ ++ +++ K PKPR A D
Sbjct: 1 MKETIVAQATAPGRGGIGILRVSGPNAIDVAQAVLG----KCPKPRMADYLPFKDE-DGT 55
Query: 86 VLDEGLCLWF 95
+LD+G+ L+F
Sbjct: 56 LLDQGIALYF 65
>gi|427409381|ref|ZP_18899583.1| tRNA modification GTPase TrmE [Sphingobium yanoikuyae ATCC 51230]
gi|425711514|gb|EKU74529.1| tRNA modification GTPase TrmE [Sphingobium yanoikuyae ATCC 51230]
Length = 428
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 119/336 (35%), Positives = 165/336 (49%), Gaps = 65/336 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
G+ V+RVSGP NAL+++A ++ PR ASL + DP LD L LW P P
Sbjct: 15 AGIGVVRVSGPMAGNALQALAG----RLPTPRMASLALLSDPRDGAPLDRALLLWLPGPR 70
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
+ TGED E HG AVI A+ AL +P LR A GEF++RAF + ++DL + E L D
Sbjct: 71 TVTGEDMAELHCHGGRAVIAAVEAALGAMPELRRATAGEFTRRAFAHGRMDLNEVEGLAD 130
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
L+ AET+ QR+ A LA +E + FS+
Sbjct: 131 LLAAETQQQRRAA----------------------LAMMEGH--FSQ------------- 153
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFS-EDEIIEDNILNTVRS 339
++ G + ++LS A EA +DFS ED++ + +I +
Sbjct: 154 ----RIDGWRMRLLDLS-----------------AMAEAALDFSDEDDVPDADIEARIGQ 192
Query: 340 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGT 399
V+ L + I S R+R GI+ V+ G PN GKS+L+N L ++ +IV+ I GT
Sbjct: 193 GVMALADDVGALI--SAPSAERLRDGIRVVLAGPPNAGKSTLLNRLVGREAAIVSDIAGT 250
Query: 400 TRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TRD IE IGG + DTAGLR T D IE G
Sbjct: 251 TRDRIEVPASIGGTAFLFTDTAGLRDETGDAIEAIG 286
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 131/291 (45%), Gaps = 72/291 (24%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ TIFALSSG G+ V+RVSGP NAL+++A ++P PR ASL + DP
Sbjct: 1 MSETIFALSSGAPPAGIGVVRVSGPMAGNALQALAG----RLPTPRMASLALLSDPRDGA 56
Query: 86 VLDEGLCLWFPRHGKCGVSVIRVSGPDTLNA--LKSMACYPDQKVSKPRYASLRNIVDPV 143
LD L LW P GP T+ + + C+ + V
Sbjct: 57 PLDRALLLWLP-------------GPRTVTGEDMAELHCHGGRAV--------------- 88
Query: 144 SEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKR 203
IA + A LGA +P LR A GEF++R
Sbjct: 89 --------------------------------IAAVEAALGA---MPELRRATAGEFTRR 113
Query: 204 AFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYI 263
AF + ++DL + E L DL+ AET+ QR+ AL M+G+ Q WR +L+ A EA +
Sbjct: 114 AFAHGRMDLNEVEGLADLLAAETQQQRRAALAMMEGHFSQRIDGWRMRLLDLSAMAEAAL 173
Query: 264 DFS-EDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
DFS ED++ + +I + V+ L + I S R+R GI+ V+
Sbjct: 174 DFSDEDDVPDADIEARIGQGVMALADDVGALI--SAPSAERLRDGIRVVLA 222
>gi|424657893|ref|ZP_18095167.1| tRNA modification GTPase TrmE [Vibrio cholerae HE-16]
gi|408057321|gb|EKG92173.1| tRNA modification GTPase TrmE [Vibrio cholerae HE-16]
Length = 453
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 174/344 (50%), Gaps = 80/344 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVS----KPRYASLRNIVDPVSEVVLDEGLCL 154
G+ GV +IRVSGP +A + Q V+ +PRYA D + LD+G+ L
Sbjct: 14 GRGGVGIIRVSGP--------LAAHVAQTVTGRTLRPRYAEYLPFTDEDGQQ-LDQGIAL 64
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
+FP P+SFTGED E Q HG V++ ++ + ++ G+RPA PGEFS+RAF N+K+DLTQ
Sbjct: 65 FFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDLTQ 124
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
EA+ DLI A +E
Sbjct: 125 AEAIADLIDASSE----------------------------------------------- 137
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IED 331
+S + L G K RI + ++S+I L VEA IDF E+EI + D
Sbjct: 138 --QAAKSALQSLQGEFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLAD 185
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
++ ++ ++ + +N+ G +R G+K VI G PN GKSSL+N L K+ +
Sbjct: 186 GKVSADLQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IVT I GTTRDV+ +H+ I G P+ ++DTAGLR SD +E G
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR-DASDAVEKIG 284
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + +++ + +PRYA D + L
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTG----RTLRPRYAEYLPFTDEDGQ-QL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALFFPNPHSFTGEDVLELQG 82
>gi|417917546|ref|ZP_12561105.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis SK236]
gi|342830183|gb|EGU64522.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis SK236]
Length = 457
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 176/339 (51%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + +SK +L +I+DP +LDE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKI--FKGKDLSKVASHTLNYGHIIDPDKNEILDEVMVGAM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N I+ + + G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 RSPKTFTREDIIEINTHGGIAVTNEIMQLVIR-EGARLAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL +LA VE ID+ E + +E+
Sbjct: 134 AVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVNIDYPEYDDVEEATT 193
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
+R + SE E++ N+L T
Sbjct: 194 EIIREKT----------------------------------------SEFEVLLTNLLKT 213
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
R G I +R GI + I+G PNVGKSSL+N L +++ +IVT I
Sbjct: 214 AR------RGKI-------------LREGISTAIIGRPNVGKSSLLNNLLREEKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 255 EGTTRDVIEEYVNINGVPLKLVDTAGIR-ETEDIVEQIG 292
>gi|229515956|ref|ZP_04405413.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae TMA
21]
gi|229347056|gb|EEO12018.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae TMA
21]
Length = 453
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 174/344 (50%), Gaps = 80/344 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVS----KPRYASLRNIVDPVSEVVLDEGLCL 154
G+ GV +IRVSGP +A + Q V+ +PRYA D + LD+G+ L
Sbjct: 14 GRGGVGIIRVSGP--------LAAHVAQTVTGRTLRPRYAEYLPFTDEDGQQ-LDQGIAL 64
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
+FP P+SFTGED E Q HG V++ ++ + ++ G+RPA PGEFS+RAF N+K+DLTQ
Sbjct: 65 FFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDLTQ 124
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
EA+ DLI A +E
Sbjct: 125 AEAIADLIDASSE----------------------------------------------- 137
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IED 331
+S + L G K RI + ++S+I L VEA IDF E+EI + D
Sbjct: 138 --QAAKSALQSLQGEFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLAD 185
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
++ ++ ++ + +N+ G +R G+K VI G PN GKSSL+N L K+ +
Sbjct: 186 GKVSADLQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IVT I GTTRDV+ +H+ I G P+ ++DTAGLR SD +E G
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR-DASDAVEKIG 284
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + +++ + +PRYA D + L
Sbjct: 4 DTIVAQATALGRGGVGIIRVSGPLAAHVAQTVTG----RTLRPRYAEYLPFTDEDGQ-QL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALFFPNPHSFTGEDVLELQG 82
>gi|423694460|ref|ZP_17668980.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens SS101]
gi|387999390|gb|EIK60719.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens SS101]
Length = 456
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 162/333 (48%), Gaps = 66/333 (19%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ GV ++R+SGP A K+++ + KPRYA +D VLDEGL ++FP
Sbjct: 15 QGRGGVGIVRISGPLAGVAAKAISG----RELKPRYAHYGQFLD-ADHSVLDEGLAIYFP 69
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
PNSFTGED E Q HG V++ +L +L G R A PGEFS+RAF N+KLDL Q EA
Sbjct: 70 GPNSFTGEDVLELQGHGGPVVLDMLLQRCLQL-GCRLARPGEFSERAFLNDKLDLAQAEA 128
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DLI+A + + AL ++G + ++ VEA IDF E+EI
Sbjct: 129 IADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLISLRIYVEAAIDFPEEEI------- 181
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+ V A +D DE L+TV
Sbjct: 182 --------------------------------DFLADGHVLAMLDKVRDE------LSTV 203
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+ Q G +R G+ VI G PN GKSSL+N L ++ +IVT I
Sbjct: 204 LREAGQ---------------GALLRDGMTVVIAGRPNAGKSSLLNALAGREAAIVTEIA 248
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRD++ +H+ I G P+ ++DTAGLR T +
Sbjct: 249 GTTRDILREHIHIDGMPLHVVDTAGLRDTDDQV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 25 AIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSK 84
A + TI A+++ G+ GV ++R+SGP A K+++ + KPRYA +D
Sbjct: 3 APRETIAAVATAQGRGGVGIVRISGPLAGVAAKAISG----RELKPRYAHYGQFLD-ADH 57
Query: 85 VVLDEGLCLWFP 96
VLDEGL ++FP
Sbjct: 58 SVLDEGLAIYFP 69
>gi|422876320|ref|ZP_16922790.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK1056]
gi|332361128|gb|EGJ38932.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK1056]
Length = 479
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 176/339 (51%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + +S+ +L +IVDP ++ +LDE +
Sbjct: 39 GEGAIGIVRLSGTDSFAIAQKI--FKGKNLSEVESHTLNYGHIVDPQNQEILDEVMLGAM 96
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 97 RSPKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARMAEPGEFTKRAFLNGRVDLTQAE 155
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL +LA VE ID+ E + +E+
Sbjct: 156 AVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNIDYPEYDDVEEMTT 215
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
+R + A EA + N+LNT
Sbjct: 216 QLMREKT-------------------------------AEFEALL---------SNLLNT 235
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
R G I +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 236 AR------RGKI-------------LREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDI 276
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 277 EGTTRDVIEEYVNIKGVPLKLIDTAGIR-ETDDLVEQIG 314
>gi|387896520|ref|YP_006326817.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens A506]
gi|387164080|gb|AFJ59279.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens A506]
Length = 456
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 162/333 (48%), Gaps = 66/333 (19%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ GV ++R+SGP A K+++ + KPRYA +D VLDEGL ++FP
Sbjct: 15 QGRGGVGIVRISGPLAGVAAKAISG----RELKPRYAHYGQFLD-ADHSVLDEGLAIYFP 69
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
PNSFTGED E Q HG V++ +L +L G R A PGEFS+RAF N+KLDL Q EA
Sbjct: 70 GPNSFTGEDVLELQGHGGPVVLDMLLQRCLQL-GCRLARPGEFSERAFLNDKLDLAQAEA 128
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DLI+A + + AL ++G + ++ VEA IDF E+EI
Sbjct: 129 IADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLISLRIYVEAAIDFPEEEI------- 181
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+ V A +D DE L+TV
Sbjct: 182 --------------------------------DFLADGHVLAMLDKVRDE------LSTV 203
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+ Q G +R G+ VI G PN GKSSL+N L ++ +IVT I
Sbjct: 204 LREAGQ---------------GALLRDGMTVVIAGRPNAGKSSLLNALAGREAAIVTEIA 248
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRD++ +H+ I G P+ ++DTAGLR T +
Sbjct: 249 GTTRDILREHIHIDGMPLHVVDTAGLRDTDDQV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 25 AIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSK 84
A + TI A+++ G+ GV ++R+SGP A K+++ + KPRYA +D
Sbjct: 3 APRETIAAVATAQGRGGVGIVRISGPLAGVAAKAISG----RELKPRYAHYGQFLD-ADH 57
Query: 85 VVLDEGLCLWFP 96
VLDEGL ++FP
Sbjct: 58 SVLDEGLAIYFP 69
>gi|429885487|ref|ZP_19367073.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
PS15]
gi|205829218|sp|A5F485.2|MNME_VIBC3 RecName: Full=tRNA modification GTPase MnmE
gi|429227709|gb|EKY33697.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
PS15]
Length = 453
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 174/344 (50%), Gaps = 80/344 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVS----KPRYASLRNIVDPVSEVVLDEGLCL 154
G+ GV +IRVSGP +A + Q V+ +PRYA D + LD+G+ L
Sbjct: 14 GRGGVGIIRVSGP--------LAAHVAQTVTGRTLRPRYAEYLPFTDEDGQQ-LDQGIAL 64
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
+FP P+SFTGED E Q HG V++ ++ + ++ G+RPA PGEFS+RAF N+K+DLTQ
Sbjct: 65 FFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDLTQ 124
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
EA+ DLI A +E
Sbjct: 125 AEAIADLIDASSE----------------------------------------------- 137
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IED 331
+S + L G K RI + ++S+I L VEA IDF E+EI + D
Sbjct: 138 --QAAKSALQSLQGEFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLAD 185
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
++ ++ ++ + +N+ G +R G+K VI G PN GKSSL+N L K+ +
Sbjct: 186 GKVSADLQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IVT I GTTRDV+ +H+ I G P+ ++DTAGLR SD +E G
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR-DASDAVEKIG 284
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + +++ + +PRYA D + L
Sbjct: 4 DTIVAQATALGRGGVGIIRVSGPLAAHVAQTVTG----RTLRPRYAEYLPFTDEDGQ-QL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALFFPNPHSFTGEDVLELQG 82
>gi|296273895|ref|YP_003656526.1| tRNA modification GTPase TrmE [Arcobacter nitrofigilis DSM 7299]
gi|296098069|gb|ADG94019.1| tRNA modification GTPase TrmE [Arcobacter nitrofigilis DSM 7299]
Length = 447
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 123/339 (36%), Positives = 175/339 (51%), Gaps = 68/339 (20%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVS-KPRYASLRNIVDPVSEVVLDEGLCLWF 156
+G +S+IR+SG D L +A ++ + PR A+L +I + +E++ DE L ++F
Sbjct: 14 NGIGSISIIRLSGKDAL----PLALTLSKRTNLNPRLATLSSIYNSDNEII-DEALLIYF 68
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
PNSFTGED EFQ HG IA+ N IL L KL G R A PGEFSKRAF NNK+DL++ E
Sbjct: 69 KNPNSFTGEDIVEFQCHGGIAISNIILNELIKL-GARLANPGEFSKRAFLNNKIDLSKAE 127
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ LI+A +E + Q+KG L ++ R+ +L LA E ID++ED++ D
Sbjct: 128 AIAKLIEARSEDAVKLLARQLKGELTNFVNDIREDLLFMLAYTEVSIDYAEDDLPSD--- 184
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
+ IEK IE
Sbjct: 185 ---------IFEQIEKKIE----------------------------------------- 194
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
VV+L ++E S+K + G K I+G+PNVGKSSL+N L +I++ I
Sbjct: 195 --KIVVKLSETLE-----SSKRREGLIEGFKVAIIGKPNVGKSSLLNKLLNFDRAIISDI 247
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRD IE+ + IG + + ++DTAG+R SD IE G
Sbjct: 248 AGTTRDTIEESVKIGTHIIKIVDTAGIR-EASDTIERIG 285
>gi|372272373|ref|ZP_09508421.1| tRNA modification GTPase TrmE [Marinobacterium stanieri S30]
Length = 455
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/330 (36%), Positives = 169/330 (51%), Gaps = 74/330 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IR+SGPD L + + + KPR+A + E LD+G+ L+FP
Sbjct: 17 GRGGVGIIRLSGPDALTLAEQLLGF----TPKPRHAHYTPFLGEDGEE-LDQGIALYFPN 71
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG +I+ +L + KL G R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 72 PHSFTGEDVVELQGHGGPVIIDLLLQRVIKL-GARLARPGEFSERAFLNDKLDLAQAEAI 130
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLAS----VEAYIDFSEDEIIEDN 274
DLI + +E + AL ++G +SE ++ESL VEA IDF E+EI D
Sbjct: 131 ADLIDSSSEQAARCALRSLQGA----FSERVHALVESLIQLRIYVEAAIDFPEEEI--DF 184
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
+ + G ++ + D+I+ N L
Sbjct: 185 LAD----------GKVQNDL-------------------------------DQIM--NHL 201
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
TVR + Q G +R G+ VI G PN GKSSL+N L ++ +IVT
Sbjct: 202 QTVRQEARQ---------------GSLLREGMNVVIAGRPNAGKSSLLNALAGRETAIVT 246
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424
I GTTRDV+ +H+ I G P+ ++DTAGLR
Sbjct: 247 DIEGTTRDVLREHIHIDGMPLHIIDTAGLR 276
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
++TI A ++ G+ GV +IR+SGPD L + + + PKPR+A + +
Sbjct: 6 QDTIAAQATPPGRGGVGIIRLSGPDALTLAEQLLGF----TPKPRHAHYTPFLGEDGE-E 60
Query: 87 LDEGLCLWFPR-HGKCGVSVIRVSG 110
LD+G+ L+FP H G V+ + G
Sbjct: 61 LDQGIALYFPNPHSFTGEDVVELQG 85
>gi|153803664|ref|ZP_01958250.1| probable tRNA modification GTPase TrmE [Vibrio cholerae MZO-3]
gi|124120801|gb|EAY39544.1| probable tRNA modification GTPase TrmE [Vibrio cholerae MZO-3]
Length = 325
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 174/344 (50%), Gaps = 80/344 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVS----KPRYASLRNIVDPVSEVVLDEGLCL 154
G+ GV +IRVSGP +A + Q V+ +PRYA D + LD+G+ L
Sbjct: 14 GRGGVGIIRVSGP--------LAAHVAQTVTGRTLRPRYAEYLPFTDEDGQQ-LDQGIAL 64
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
+FP P+SFTGED E Q HG V++ ++ + ++ G+RPA PGEFS+RAF N+K+DLTQ
Sbjct: 65 FFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDLTQ 124
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
EA+ DLI A +E
Sbjct: 125 AEAIADLIDASSE----------------------------------------------- 137
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IED 331
+S + L G K RI + ++S+I L VEA IDF E+EI + D
Sbjct: 138 --QAAKSALQSLQGEFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLAD 185
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
++ ++ ++ + +N+ G +R G+K VI G PN GKSSL+N L K+ +
Sbjct: 186 GKVSADLQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IVT I GTTRDV+ +H+ I G P+ ++DTAGLR SD +E G
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR-DASDAVEKIG 284
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + +++ + +PRYA D + L
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTG----RTLRPRYAEYLPFTDEDGQ-QL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALFFPNPHSFTGEDVLELQG 82
>gi|329115888|ref|ZP_08244605.1| tRNA modification GTPase TrmE [Streptococcus parauberis NCFD 2020]
gi|326906293|gb|EGE53207.1| tRNA modification GTPase TrmE [Streptococcus parauberis NCFD 2020]
Length = 458
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/337 (34%), Positives = 172/337 (51%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG L+ KS+ D + +I+DP + +LDE + +
Sbjct: 18 GEGAIGIVRLSGSQALDIAKSVFKGKDLASVASHTINYGHILDPDKDEILDEVMVSVMRE 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L K G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 78 PKTFTREDVVEINTHGGIAVTNEILQLLIK-HGARMAEPGEFTKRAFLNGRVDLTQAEAV 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+LKQL + RQ ILNT
Sbjct: 137 MDIIRAKTDKAMNIAVKQLDGSLKQLIDDTRQ-----------------------EILNT 173
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ +R
Sbjct: 174 -----------------------------------LAQVEVNIDYPEYDDVEEMTTALMR 198
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + +E + + + G +R G+ + I+G PNVGKSSL+N L +++ +IVT I G
Sbjct: 199 EKTQEFQTLLENLLRTARR-GKILREGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIAG 257
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 258 TTRDVIEEYVNIKGVPLKLVDTAGIR-DTEDIVEKIG 293
>gi|121730054|ref|ZP_01682463.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae V52]
gi|147673066|ref|YP_001218408.1| tRNA modification GTPase TrmE [Vibrio cholerae O395]
gi|227116544|ref|YP_002818440.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae O395]
gi|254291135|ref|ZP_04961932.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae
AM-19226]
gi|121628203|gb|EAX60726.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae V52]
gi|146314949|gb|ABQ19488.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae O395]
gi|150422980|gb|EDN14930.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae
AM-19226]
gi|227011994|gb|ACP08204.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae O395]
Length = 464
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 174/344 (50%), Gaps = 80/344 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVS----KPRYASLRNIVDPVSEVVLDEGLCL 154
G+ GV +IRVSGP +A + Q V+ +PRYA D + LD+G+ L
Sbjct: 25 GRGGVGIIRVSGP--------LAAHVAQTVTGRTLRPRYAEYLPFTDEDGQQ-LDQGIAL 75
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
+FP P+SFTGED E Q HG V++ ++ + ++ G+RPA PGEFS+RAF N+K+DLTQ
Sbjct: 76 FFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDLTQ 135
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
EA+ DLI A +E
Sbjct: 136 AEAIADLIDASSE----------------------------------------------- 148
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IED 331
+S + L G K RI + ++S+I L VEA IDF E+EI + D
Sbjct: 149 --QAAKSALQSLQGEFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLAD 196
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
++ ++ ++ + +N+ G +R G+K VI G PN GKSSL+N L K+ +
Sbjct: 197 GKVSADLQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 252
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IVT I GTTRDV+ +H+ I G P+ ++DTAGLR SD +E G
Sbjct: 253 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR-DASDAVEKIG 295
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + +++ + +PRYA D + L
Sbjct: 15 DTIVAQATALGRGGVGIIRVSGPLAAHVAQTVTG----RTLRPRYAEYLPFTDEDGQ-QL 69
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 70 DQGIALFFPNPHSFTGEDVLELQG 93
>gi|417818605|ref|ZP_12465227.1| tRNA modification GTPase TrmE [Vibrio cholerae HE39]
gi|423961695|ref|ZP_17735801.1| tRNA modification GTPase TrmE [Vibrio cholerae HE-40]
gi|423986052|ref|ZP_17739357.1| tRNA modification GTPase TrmE [Vibrio cholerae HE-46]
gi|340044213|gb|EGR05166.1| tRNA modification GTPase TrmE [Vibrio cholerae HE39]
gi|408654886|gb|EKL26013.1| tRNA modification GTPase TrmE [Vibrio cholerae HE-40]
gi|408662840|gb|EKL33745.1| tRNA modification GTPase TrmE [Vibrio cholerae HE-46]
Length = 453
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/340 (34%), Positives = 174/340 (51%), Gaps = 72/340 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP + + +++ + +PRYA D + LD+G+ L+FP
Sbjct: 14 GRGGVGIIRVSGPLSAHVAQTVTG----RTLRPRYAEYLPFTDEDGQQ-LDQGIALFFPN 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ ++ + ++ G+RPA PGEFS+RAF N+K+DLTQ EA+
Sbjct: 69 PHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDLTQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E
Sbjct: 129 ADLIDASSE-------------------------------------------------QA 139
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
+S + L G K RI + ++S+I L VEA IDF E+EI + D ++
Sbjct: 140 AKSALQSLQGEFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLADGKVS 189
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
++ ++ + +N+ G +R G+K VI G PN GKSSL+N L K+ +IVT
Sbjct: 190 ADLQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTD 245
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I GTTRDV+ +H+ I G P+ ++DTAGLR SD +E G
Sbjct: 246 IAGTTRDVLREHIHIDGMPLHIIDTAGLR-DASDAVEKIG 284
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + + +++ + +PRYA D + L
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLSAHVAQTVTG----RTLRPRYAEYLPFTDEDGQ-QL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALFFPNPHSFTGEDVLELQG 82
>gi|153212987|ref|ZP_01948581.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae 1587]
gi|124116213|gb|EAY35033.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae 1587]
Length = 464
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 174/344 (50%), Gaps = 80/344 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVS----KPRYASLRNIVDPVSEVVLDEGLCL 154
G+ GV +IRVSGP +A + Q V+ +PRYA D + LD+G+ L
Sbjct: 25 GRGGVGIIRVSGP--------LAAHVAQTVTGRTLRPRYAEYLPFTDEDGQQ-LDQGIAL 75
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
+FP P+SFTGED E Q HG V++ ++ + ++ G+RPA PGEFS+RAF N+K+DLTQ
Sbjct: 76 FFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDLTQ 135
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
EA+ DLI A +E
Sbjct: 136 AEAIADLIDASSE----------------------------------------------- 148
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IED 331
+S + L G K RI + ++S+I L VEA IDF E+EI + D
Sbjct: 149 --QAAKSALQSLQGEFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLAD 196
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
++ ++ ++ + +N+ G +R G+K VI G PN GKSSL+N L K+ +
Sbjct: 197 GKVSADLQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 252
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IVT I GTTRDV+ +H+ I G P+ ++DTAGLR SD +E G
Sbjct: 253 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR-DASDAVEKIG 295
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + +++ + +PRYA D + L
Sbjct: 15 DTIVAQATALGRGGVGIIRVSGPLAAHVAQTVTG----RTLRPRYAEYLPFTDEDGQ-QL 69
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 70 DQGIALFFPNPHSFTGEDVLELQG 93
>gi|90023653|ref|YP_529480.1| tRNA modification GTPase TrmE [Saccharophagus degradans 2-40]
gi|123395362|sp|Q21DG1.1|MNME_SACD2 RecName: Full=tRNA modification GTPase MnmE
gi|89953253|gb|ABD83268.1| tRNA modification GTPase trmE [Saccharophagus degradans 2-40]
Length = 456
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 168/329 (51%), Gaps = 68/329 (20%)
Query: 99 GKCGVSVIRVSGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ GV +IRVSGP L A + P KPRYA + + ++ LD+G+ L+FP
Sbjct: 17 GRGGVGIIRVSGPKALPIAQHILGITP-----KPRYAHYGDFCNANGDI-LDQGIALYFP 70
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P+SFTGED E Q HG +++ +L A+ + G R A PGEFS+RAF N+KLDL Q EA
Sbjct: 71 NPHSFTGEDVLELQGHGGPVILDMLLDAVVQ-AGARLARPGEFSERAFLNDKLDLAQAEA 129
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DLI+A + Q+A Q +LK +S N ++
Sbjct: 130 IADLIEASS----QQAAKQALNSLKGEFS---------------------------NKIH 158
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+ Q++ L +E I+ E IDF D I+E LN V
Sbjct: 159 ELVEQLIHLRMYVESAIDFP--------------------EEEIDFLSDGIVEGK-LNDV 197
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
Q + ++ G +R G+K VI G PN GKSSL+N L +K I+IVT+I
Sbjct: 198 IDQTDAVLAQAQQ--------GALLRDGMKVVIAGRPNAGKSSLLNALAEKDIAIVTNIA 249
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTT 426
GTTRDV+ +H+ I G P+ ++DTAGLR +
Sbjct: 250 GTTRDVLREHIHIDGMPLHIIDTAGLRDS 278
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TI A+++ G+ GV +IRVSGP L +A + PKPRYA + + + +LD
Sbjct: 8 TIAAIATAPGRGGVGIIRVSGPKAL----PIAQHILGITPKPRYAHYGDFCN-ANGDILD 62
Query: 89 EGLCLWFPR-HGKCGVSVIRV---SGPDTLNALKSMACYPDQKVSKPRYASLRNIVD 141
+G+ L+FP H G V+ + GP L+ L ++++P S R ++
Sbjct: 63 QGIALYFPNPHSFTGEDVLELQGHGGPVILDMLLDAVVQAGARLARPGEFSERAFLN 119
>gi|153821980|ref|ZP_01974647.1| tRNA modification GTPase TrmE [Vibrio cholerae B33]
gi|229508290|ref|ZP_04397794.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae BX
330286]
gi|229508871|ref|ZP_04398362.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae B33]
gi|229517142|ref|ZP_04406588.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae RC9]
gi|229606564|ref|YP_002877212.1| tRNA modification GTPase TrmE [Vibrio cholerae MJ-1236]
gi|255746813|ref|ZP_05420759.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholera CIRS
101]
gi|262155893|ref|ZP_06029015.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
INDRE 91/1]
gi|360036772|ref|YP_004938535.1| tRNA modification GTPase TrmE [Vibrio cholerae O1 str. 2010EL-1786]
gi|379739910|ref|YP_005331879.1| tRNA modification GTPase TrmE [Vibrio cholerae IEC224]
gi|417811086|ref|ZP_12457754.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-49A2]
gi|417814838|ref|ZP_12461482.1| tRNA modification GTPase TrmE [Vibrio cholerae HCUF01]
gi|418330715|ref|ZP_12941682.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-06A1]
gi|418339178|ref|ZP_12948070.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-23A1]
gi|418342248|ref|ZP_12949069.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-28A1]
gi|418347429|ref|ZP_12952171.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-43A1]
gi|418356609|ref|ZP_12959325.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-61A1]
gi|419824479|ref|ZP_14347992.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1033(6)]
gi|421315283|ref|ZP_15765859.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1032(5)]
gi|421318806|ref|ZP_15769370.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1038(11)]
gi|421322859|ref|ZP_15773394.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1041(14)]
gi|421326311|ref|ZP_15776832.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1042(15)]
gi|421330236|ref|ZP_15780724.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1046(19)]
gi|421333928|ref|ZP_15784402.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1048(21)]
gi|421337744|ref|ZP_15788188.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-20A2]
gi|421345310|ref|ZP_15795700.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-46A1]
gi|421348885|ref|ZP_15799256.1| tRNA modification GTPase TrmE [Vibrio cholerae HE-25]
gi|422890030|ref|ZP_16932489.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-40A1]
gi|422900602|ref|ZP_16936238.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-48A1]
gi|422905000|ref|ZP_16939886.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-70A1]
gi|422911748|ref|ZP_16946297.1| tRNA modification GTPase TrmE [Vibrio cholerae HFU-02]
gi|422921249|ref|ZP_16954498.1| tRNA modification GTPase TrmE [Vibrio cholerae BJG-01]
gi|422924214|ref|ZP_16957283.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-38A1]
gi|423143280|ref|ZP_17130914.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-19A1]
gi|423148260|ref|ZP_17135637.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-21A1]
gi|423152049|ref|ZP_17139279.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-22A1]
gi|423154840|ref|ZP_17141991.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-32A1]
gi|423158704|ref|ZP_17145690.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-33A2]
gi|423163367|ref|ZP_17150182.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-48B2]
gi|423729370|ref|ZP_17702720.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-17A1]
gi|423775180|ref|ZP_17713876.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-50A2]
gi|423887675|ref|ZP_17724937.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-62A1]
gi|423920145|ref|ZP_17729550.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-77A1]
gi|424000550|ref|ZP_17743659.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-17A2]
gi|424007526|ref|ZP_17750490.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-37A1]
gi|424022513|ref|ZP_17762195.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-62B1]
gi|424025532|ref|ZP_17765168.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-69A1]
gi|424584904|ref|ZP_18024515.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1030(3)]
gi|424593530|ref|ZP_18032888.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1040(13)]
gi|424597459|ref|ZP_18036675.1| tRNA modification GTPase TrmE [Vibrio Cholerae CP1044(17)]
gi|424600236|ref|ZP_18039409.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1047(20)]
gi|424605135|ref|ZP_18044121.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1050(23)]
gi|424608861|ref|ZP_18047738.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-39A1]
gi|424611766|ref|ZP_18050593.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-41A1]
gi|424615657|ref|ZP_18054367.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-42A1]
gi|424620403|ref|ZP_18058950.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-47A1]
gi|424643224|ref|ZP_18080999.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-56A2]
gi|424651155|ref|ZP_18088696.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-57A2]
gi|424655108|ref|ZP_18092425.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-81A2]
gi|440712071|ref|ZP_20892697.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae 4260B]
gi|443502061|ref|ZP_21069070.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-64A1]
gi|443505960|ref|ZP_21072776.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-65A1]
gi|443509798|ref|ZP_21076489.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-67A1]
gi|443513638|ref|ZP_21080200.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-68A1]
gi|443517446|ref|ZP_21083889.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-71A1]
gi|443522032|ref|ZP_21088299.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-72A2]
gi|443528966|ref|ZP_21094989.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-7A1]
gi|443536491|ref|ZP_21102353.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-80A1]
gi|443536529|ref|ZP_21102389.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-81A1]
gi|449054679|ref|ZP_21733347.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae O1
str. Inaba G4222]
gi|31340537|sp|Q9KVY5.2|MNME_VIBCH RecName: Full=tRNA modification GTPase MnmE
gi|126520519|gb|EAZ77742.1| tRNA modification GTPase TrmE [Vibrio cholerae B33]
gi|229346205|gb|EEO11177.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae RC9]
gi|229354146|gb|EEO19078.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae B33]
gi|229354563|gb|EEO19485.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae BX
330286]
gi|229369219|gb|ACQ59642.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
MJ-1236]
gi|255735570|gb|EET90969.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholera CIRS
101]
gi|262030345|gb|EEY48987.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
INDRE 91/1]
gi|340046010|gb|EGR06945.1| tRNA modification GTPase TrmE [Vibrio cholerae HCUF01]
gi|340046196|gb|EGR07127.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-49A2]
gi|341627208|gb|EGS52532.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-70A1]
gi|341628612|gb|EGS53837.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-48A1]
gi|341628898|gb|EGS54086.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-40A1]
gi|341642171|gb|EGS66656.1| tRNA modification GTPase TrmE [Vibrio cholerae HFU-02]
gi|341649403|gb|EGS73380.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-38A1]
gi|341649438|gb|EGS73414.1| tRNA modification GTPase TrmE [Vibrio cholerae BJG-01]
gi|356423349|gb|EHH76801.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-06A1]
gi|356424005|gb|EHH77427.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-21A1]
gi|356428046|gb|EHH81276.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-19A1]
gi|356428731|gb|EHH81952.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-23A1]
gi|356436198|gb|EHH89318.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-22A1]
gi|356439147|gb|EHH92136.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-28A1]
gi|356446869|gb|EHH99660.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-32A1]
gi|356448861|gb|EHI01622.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-43A1]
gi|356450781|gb|EHI03491.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-61A1]
gi|356451431|gb|EHI04116.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-33A2]
gi|356456881|gb|EHI09458.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-48B2]
gi|356647926|gb|AET27981.1| tRNA modification GTPase TrmE [Vibrio cholerae O1 str. 2010EL-1786]
gi|378793420|gb|AFC56891.1| tRNA modification GTPase TrmE [Vibrio cholerae IEC224]
gi|395924247|gb|EJH35053.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1032(5)]
gi|395925443|gb|EJH36241.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1041(14)]
gi|395926559|gb|EJH37337.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1038(11)]
gi|395936035|gb|EJH46765.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1042(15)]
gi|395936411|gb|EJH47135.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1046(19)]
gi|395938291|gb|EJH48985.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1048(21)]
gi|395948282|gb|EJH58933.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-20A2]
gi|395948920|gb|EJH59555.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-46A1]
gi|395957078|gb|EJH67663.1| tRNA modification GTPase TrmE [Vibrio cholerae HE-25]
gi|395965472|gb|EJH75641.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-56A2]
gi|395965621|gb|EJH75784.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-57A2]
gi|395967928|gb|EJH77952.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-42A1]
gi|395977675|gb|EJH87079.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-47A1]
gi|395979786|gb|EJH89111.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1030(3)]
gi|395980190|gb|EJH89479.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1047(20)]
gi|408011487|gb|EKG49297.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-39A1]
gi|408018667|gb|EKG56100.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-41A1]
gi|408038989|gb|EKG75298.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1040(13)]
gi|408046103|gb|EKG81819.1| tRNA modification GTPase TrmE [Vibrio Cholerae CP1044(17)]
gi|408047874|gb|EKG83371.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1050(23)]
gi|408058357|gb|EKG93160.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-81A2]
gi|408613009|gb|EKK86340.1| tRNA modification GTPase TrmE [Vibrio cholerae CP1033(6)]
gi|408629180|gb|EKL01889.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-17A1]
gi|408632242|gb|EKL04711.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-50A2]
gi|408661051|gb|EKL32045.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-77A1]
gi|408661807|gb|EKL32786.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-62A1]
gi|408843790|gb|EKL83940.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-37A1]
gi|408850917|gb|EKL90858.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-17A2]
gi|408876556|gb|EKM15669.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-62B1]
gi|408882520|gb|EKM21335.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-69A1]
gi|439972316|gb|ELP48611.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae 4260B]
gi|443433544|gb|ELS76045.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-64A1]
gi|443437373|gb|ELS83464.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-65A1]
gi|443441213|gb|ELS90875.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-67A1]
gi|443445029|gb|ELS98280.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-68A1]
gi|443448863|gb|ELT05472.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-71A1]
gi|443451925|gb|ELT12162.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-72A2]
gi|443460229|gb|ELT27617.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-7A1]
gi|443460346|gb|ELT31435.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-80A1]
gi|443467776|gb|ELT42430.1| tRNA modification GTPase TrmE [Vibrio cholerae HC-81A1]
gi|448265825|gb|EMB03058.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae O1
str. Inaba G4222]
Length = 453
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 174/344 (50%), Gaps = 80/344 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVS----KPRYASLRNIVDPVSEVVLDEGLCL 154
G+ GV +IRVSGP +A + Q V+ +PRYA D + LD+G+ L
Sbjct: 14 GRGGVGIIRVSGP--------LAAHVAQTVTGRTLRPRYAEYLPFTDEDGQQ-LDQGIAL 64
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
+FP P+SFTGED E Q HG V++ ++ + ++ G+RPA PGEFS+RAF N+K+DLTQ
Sbjct: 65 FFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDLTQ 124
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
EA+ DLI A +E
Sbjct: 125 AEAIADLIDASSE----------------------------------------------- 137
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IED 331
+S + L G K RI + ++S+I L VEA IDF E+EI + D
Sbjct: 138 --QAAKSALQSLQGEFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLAD 185
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
++ ++ ++ + +N+ G +R G+K VI G PN GKSSL+N L K+ +
Sbjct: 186 GKVSADLQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IVT I GTTRDV+ +H+ I G P+ ++DTAGLR SD +E G
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR-DASDAVEKIG 284
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + +++ + +PRYA D + L
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTG----RTLRPRYAEYLPFTDEDGQ-QL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALFFPNPHSFTGEDVLELQG 82
>gi|404400605|ref|ZP_10992189.1| tRNA modification GTPase TrmE [Pseudomonas fuscovaginae UPB0736]
Length = 456
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 160/333 (48%), Gaps = 66/333 (19%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ GV ++R+SGP ++ A + KPRYA + EV LDEGL L+FP
Sbjct: 15 QGRGGVGIVRISGP----LAQAAALAISGRELKPRYAHYGPFMGETGEV-LDEGLALYFP 69
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
PNSFTGED E Q HG V++ +L +L G R A PGEFS+RAF N+KLDL Q EA
Sbjct: 70 GPNSFTGEDVLELQGHGGPVVLDMLLQRCLQL-GCRLARPGEFSERAFLNDKLDLAQAEA 128
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DLI+A + + AL ++G + ++ VEA IDF E+EI
Sbjct: 129 IADLIEASSTQAARNALRSLQGAFSHRVHHLTEQLISLRIYVEAAIDFPEEEI------- 181
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+ V A +D DE L+TV
Sbjct: 182 --------------------------------DFLADGHVLAMLDAVRDE------LSTV 203
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+ Q G +R G+ VI G PN GKSSL+N L ++ +IVT I
Sbjct: 204 IREAGQ---------------GALLRDGMTVVIAGRPNAGKSSLLNALAGREAAIVTEIA 248
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRD++ +H+ I G P+ ++DTAGLR T +
Sbjct: 249 GTTRDILREHIHIDGMPLHVVDTAGLRDTDDHV 281
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
+ TI A+++ G+ GV ++R+SGP ++ A + KPRYA + + V
Sbjct: 5 RETIAAVATAQGRGGVGIVRISGP----LAQAAALAISGRELKPRYAHYGPFMGETGE-V 59
Query: 87 LDEGLCLWFP 96
LDEGL L+FP
Sbjct: 60 LDEGLALYFP 69
>gi|229530209|ref|ZP_04419598.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
12129(1)]
gi|229332342|gb|EEN97829.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
12129(1)]
Length = 453
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 174/344 (50%), Gaps = 80/344 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVS----KPRYASLRNIVDPVSEVVLDEGLCL 154
G+ GV +IRVSGP +A + Q V+ +PRYA D + LD+G+ L
Sbjct: 14 GRGGVGIIRVSGP--------LAAHVAQTVTGRTLRPRYAEYLPFTDEDGQQ-LDQGIAL 64
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
+FP P+SFTGED E Q HG V++ ++ + ++ G+RPA PGEFS+RAF N+K+DLTQ
Sbjct: 65 FFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDLTQ 124
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
EA+ DLI A +E
Sbjct: 125 AEAIADLIDASSE----------------------------------------------- 137
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IED 331
+S + L G K RI + ++S+I L VEA IDF E+EI + D
Sbjct: 138 --QAAKSALQSLQGEFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLAD 185
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
++ ++ ++ + +N+ G +R G+K VI G PN GKSSL+N L K+ +
Sbjct: 186 GKVSADLQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IVT I GTTRDV+ +H+ I G P+ ++DTAGLR SD +E G
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR-DASDAVEKIG 284
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + +++ + +PRYA D + L
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTG----RTLRPRYAEYLPFTDEDGQ-QL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALFFPNPHSFTGEDVLELQG 82
>gi|15640035|ref|NP_062587.1| tRNA modification GTPase TrmE [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|153827657|ref|ZP_01980324.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae MZO-2]
gi|227080240|ref|YP_002808791.1| tRNA modification GTPase TrmE [Vibrio cholerae M66-2]
gi|254851569|ref|ZP_05240919.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae MO10]
gi|298501189|ref|ZP_07010988.1| tRNA modification GTPase TrmE [Vibrio cholerae MAK 757]
gi|9654394|gb|AAF93181.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|149737870|gb|EDM52775.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae MZO-2]
gi|227008128|gb|ACP04340.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae M66-2]
gi|254847274|gb|EET25688.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae MO10]
gi|297540061|gb|EFH76123.1| tRNA modification GTPase TrmE [Vibrio cholerae MAK 757]
Length = 464
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 174/344 (50%), Gaps = 80/344 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVS----KPRYASLRNIVDPVSEVVLDEGLCL 154
G+ GV +IRVSGP +A + Q V+ +PRYA D + LD+G+ L
Sbjct: 25 GRGGVGIIRVSGP--------LAAHVAQTVTGRTLRPRYAEYLPFTDEDGQQ-LDQGIAL 75
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
+FP P+SFTGED E Q HG V++ ++ + ++ G+RPA PGEFS+RAF N+K+DLTQ
Sbjct: 76 FFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDLTQ 135
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
EA+ DLI A +E
Sbjct: 136 AEAIADLIDASSE----------------------------------------------- 148
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IED 331
+S + L G K RI + ++S+I L VEA IDF E+EI + D
Sbjct: 149 --QAAKSALQSLQGEFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLAD 196
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
++ ++ ++ + +N+ G +R G+K VI G PN GKSSL+N L K+ +
Sbjct: 197 GKVSADLQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 252
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IVT I GTTRDV+ +H+ I G P+ ++DTAGLR SD +E G
Sbjct: 253 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR-DASDAVEKIG 295
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + +++ + +PRYA D + L
Sbjct: 15 DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTG----RTLRPRYAEYLPFTDEDGQ-QL 69
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 70 DQGIALFFPNPHSFTGEDVLELQG 93
>gi|238787834|ref|ZP_04631631.1| tRNA modification GTPase mnmE [Yersinia frederiksenii ATCC 33641]
gi|238724177|gb|EEQ15820.1| tRNA modification GTPase mnmE [Yersinia frederiksenii ATCC 33641]
Length = 454
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 119/335 (35%), Positives = 169/335 (50%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG A ++A K+ KPRYA D V +LD+G+ L+FP
Sbjct: 15 GRGGVGILRVSG----RAAATVAQAVLGKLPKPRYADYLPFKD-VDGSILDQGIALYFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
RS V L G+ VRI ++++ L VEA IDF ++EI + D
Sbjct: 141 ARSAVNSLQGAFS----------VRIHQLVEALTHLRIYVEAAIDFPDEEIDFLSDG--- 187
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+ Q+ + +E+ + + G +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 188 KIEGQLNGVMADLEQ-VRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 246
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 247 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
++ +TI A ++ G+ GV ++RVSG A ++A K+PKPRYA D V
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRVSG----RAAATVAQAVLGKLPKPRYADYLPFKD-VD 55
Query: 84 KVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRN 138
+LD+G+ L+FP + G V+ + GP L+ LK + P ++++P S R
Sbjct: 56 GSILDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERA 115
Query: 139 IVD 141
++
Sbjct: 116 FLN 118
>gi|190171256|gb|ACE63698.1| ThdF [Pantoea sp. E147]
Length = 439
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 163/334 (48%), Gaps = 69/334 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + + K+ KPRYA D V LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGAQAAEVARQLLG----KLPKPRYADYLPFTDSDGRV-LDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRIVALPGVRIAQPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 122 ADL-----------------------------------------IDASSEQ--------A 132
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS V L G I + +R VEA IDF ++EI + L+ R
Sbjct: 133 ARSAVNSLQGVFSTRINHLVEALTHLR---------IYVEAAIDFPDEEI---DFLSDGR 180
Query: 339 --SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+Q+ + G ++ + + G +R G+K VI G PN GKSSL+N L + +IVT I
Sbjct: 181 IEAQLNTVIGDLDA-VRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTDI 239
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 240 AGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 273
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++RVSG + + K+PKPRYA D +V LD+G+ LWFP
Sbjct: 7 GRGGVGILRVSGAQAAEVARQLLG----KLPKPRYADYLPFTDSDGRV-LDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRIVALPGVRIAQPGEFSERAFLN 110
>gi|268593483|ref|ZP_06127704.1| tRNA modification GTPase TrmE [Providencia rettgeri DSM 1131]
gi|291310904|gb|EFE51357.1| tRNA modification GTPase TrmE [Providencia rettgeri DSM 1131]
Length = 454
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 168/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSGP + + K+ KPRYA D V LD+G+ L+FP
Sbjct: 15 GRGGVGILRVSGPKAAQVAEIVLG----KLPKPRYADYLPFRDEEGSV-LDQGIALYFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + + G+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLRRILTIDGIRIANPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + A++ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSAMNSLQGAFSSHIHQLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E++ D L VR
Sbjct: 187 ---------GKIEAKL-------------------------------NEVVAD--LEQVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
SQ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 SQARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
+ I +TI A ++ G+ GV ++RVSGP + + K+PKPRYA D
Sbjct: 1 MQINDTIVAQATPPGRGGVGILRVSGPKAAQVAEIVLG----KLPKPRYADYLPFRDEEG 56
Query: 84 KVVLDEGLCLWFP 96
VLD+G+ L+FP
Sbjct: 57 S-VLDQGIALYFP 68
>gi|440738485|ref|ZP_20918016.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens BRIP34879]
gi|447919192|ref|YP_007399760.1| tRNA modification GTPase TrmE [Pseudomonas poae RE*1-1-14]
gi|440381021|gb|ELQ17567.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens BRIP34879]
gi|445203055|gb|AGE28264.1| tRNA modification GTPase TrmE [Pseudomonas poae RE*1-1-14]
Length = 456
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 119/337 (35%), Positives = 162/337 (48%), Gaps = 74/337 (21%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVS----KPRYASLRNIVDPVSEVVLDEGLC 153
G+ GV ++R+SGP +A Q +S KPRYA +D + VLDEGL
Sbjct: 15 QGRGGVGIVRISGP--------LAGRAAQLISGRELKPRYAHYGPFLD-ADKSVLDEGLA 65
Query: 154 LWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLT 213
L+FP PNSFTGED E Q HG V++ +L +L G R A PGEFS+RAF N+KLDL
Sbjct: 66 LYFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCLQL-GCRLARPGEFSERAFLNDKLDLA 124
Query: 214 QTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIED 273
Q EA+ DLI+A + + AL ++G + ++ VEA IDF E+EI
Sbjct: 125 QAEAIADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLISLRIYVEAAIDFPEEEI--- 181
Query: 274 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNI 333
+ V A +D DE
Sbjct: 182 ------------------------------------DFLADGHVLAMLDKVRDE------ 199
Query: 334 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIV 393
L+TV + Q G +R G+ VI G PN GKSSL+N L ++ +IV
Sbjct: 200 LSTVLREAGQ---------------GALLRDGMTVVIAGRPNAGKSSLLNALAGREAAIV 244
Query: 394 TSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
T I GTTRD++ +H+ I G P+ ++DTAGLR T +
Sbjct: 245 TEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTDDQV 281
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 25 AIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSK 84
A + TI A+++ G+ GV ++R+SGP A + ++ + KPRYA +D K
Sbjct: 3 APRETIAAVATAQGRGGVGIVRISGPLAGRAAQLISG----RELKPRYAHYGPFLD-ADK 57
Query: 85 VVLDEGLCLWFP 96
VLDEGL L+FP
Sbjct: 58 SVLDEGLALYFP 69
>gi|262402089|ref|ZP_06078653.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. RC586]
gi|262351735|gb|EEZ00867.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. RC586]
Length = 453
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 118/340 (34%), Positives = 174/340 (51%), Gaps = 72/340 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP + + +++ + +PRYA D + LD+G+ L+FP
Sbjct: 14 GRGGVGIIRVSGPLSAHVAQTVTG----RTLRPRYAEYLPFTDEDGQQ-LDQGIALFFPN 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ ++ + ++ G+RPA PGEFS+RAF N+K+DLTQ EA+
Sbjct: 69 PHSFTGEDVLELQGHGGPVVMDMLIRRILQINGVRPARPGEFSERAFLNDKMDLTQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E
Sbjct: 129 ADLIDASSE-------------------------------------------------QA 139
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
+S + L G K RI + ++S+I L VEA IDF E+EI + D ++
Sbjct: 140 AKSALQSLQGEFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLADGKVS 189
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
++ ++ + +N+ G +R G+K VI G PN GKSSL+N L K+ +IVT
Sbjct: 190 ADLQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTD 245
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I GTTRDV+ +H+ I G P+ ++DTAGLR SD +E G
Sbjct: 246 IAGTTRDVLREHIHIDGMPLHIIDTAGLR-DASDAVEKIG 284
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + + +++ + +PRYA D + L
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLSAHVAQTVTG----RTLRPRYAEYLPFTDEDGQ-QL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALFFPNPHSFTGEDVLELQG 82
>gi|262172771|ref|ZP_06040449.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio mimicus
MB-451]
gi|261893847|gb|EEY39833.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio mimicus
MB-451]
Length = 453
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 174/344 (50%), Gaps = 80/344 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVS----KPRYASLRNIVDPVSEVVLDEGLCL 154
G+ GV +IRVSGP +A + Q V+ +PRYA D + LD+G+ L
Sbjct: 14 GRGGVGIIRVSGP--------LAAHVAQTVTGRTLRPRYAEYLPFTDENGQQ-LDQGIAL 64
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
+FP P+SFTGED E Q HG V++ ++ + ++ G+RPA PGEFS+RAF N+K+DLTQ
Sbjct: 65 FFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQINGVRPARPGEFSERAFLNDKMDLTQ 124
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
EA+ DLI A +E
Sbjct: 125 AEAIADLIDASSE----------------------------------------------- 137
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IED 331
+S + L G K RI + ++S+I L VEA IDF E+EI + D
Sbjct: 138 --QAAKSALQSLQGEFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLAD 185
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
++ ++ ++ + +N+ G +R G+K VI G PN GKSSL+N L K+ +
Sbjct: 186 GKVSADLQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IVT I GTTRDV+ +H+ I G P+ ++DTAGLR SD +E G
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR-DASDAVEKIG 284
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + +++ + +PRYA D + L
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTG----RTLRPRYAEYLPFTDENGQ-QL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALFFPNPHSFTGEDVLELQG 82
>gi|390450537|ref|ZP_10236128.1| tRNA modification GTPase TrmE [Nitratireductor aquibiodomus RA22]
gi|389662440|gb|EIM74006.1| tRNA modification GTPase TrmE [Nitratireductor aquibiodomus RA22]
Length = 437
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 116/324 (35%), Positives = 165/324 (50%), Gaps = 64/324 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+V+R+SGP T +AL+++A K+ +PR+A+LR + D +LD L L+FP P
Sbjct: 15 SGVAVVRLSGPGTCSALEALAG----KLPEPRHATLRTLRDSRG-AILDRSLVLFFPGPQ 69
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDC E +HG AV+ A+L L+ R AE GEF++RAF N K D
Sbjct: 70 SFTGEDCGELHLHGGRAVVQAVLETLSGYSDFRLAEAGEFTRRAFLNGKF---------D 120
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
L +AE L L S A EA F+ L
Sbjct: 121 LTEAEA--------------LADLIS----------AETEAQRRFA---------LANAE 147
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
S+ L+ K + + A +EA +DFS++E + ++ V +
Sbjct: 148 SRHRALYDGWRKTL----------------IHARAMIEAELDFSDEEDVPGSVAERVWEE 191
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
+ +L S+E+H + IR G + VI+G PN GKSSL+N L ++ I+IVT PGTT
Sbjct: 192 IAELRSSLERHAAGYRTAEI-IREGFRVVILGAPNAGKSSLLNMLARRDIAIVTEEPGTT 250
Query: 401 RDVIEKHLDIGGYPVILLDTAGLR 424
RDV+E LD+GG VI+ DTAG+R
Sbjct: 251 RDVLEAVLDVGGVKVIVTDTAGIR 274
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 49/71 (69%), Gaps = 5/71 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
++ TIFALSSG GV+V+R+SGP T +AL+++A K+P+PR+A+LR + D
Sbjct: 1 MRETIFALSSGALPSGVAVVRLSGPGTCSALEALAG----KLPEPRHATLRTLRDS-RGA 55
Query: 86 VLDEGLCLWFP 96
+LD L L+FP
Sbjct: 56 ILDRSLVLFFP 66
>gi|424810933|ref|ZP_18236267.1| tRNA modification GTPase TrmE [Vibrio mimicus SX-4]
gi|342321944|gb|EGU17740.1| tRNA modification GTPase TrmE [Vibrio mimicus SX-4]
Length = 453
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 174/344 (50%), Gaps = 80/344 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVS----KPRYASLRNIVDPVSEVVLDEGLCL 154
G+ GV +IRVSGP +A + Q V+ +PRYA D + LD+G+ L
Sbjct: 14 GRGGVGIIRVSGP--------LAAHVAQTVTGRTLRPRYAEYLPFTDENGQQ-LDQGIAL 64
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
+FP P+SFTGED E Q HG V++ ++ + ++ G+RPA PGEFS+RAF N+K+DLTQ
Sbjct: 65 FFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQINGVRPARPGEFSERAFLNDKMDLTQ 124
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
EA+ DLI A +E
Sbjct: 125 AEAIADLIDASSE----------------------------------------------- 137
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IED 331
+S + L G K RI + ++S+I L VEA IDF E+EI + D
Sbjct: 138 --QAAKSALQSLQGEFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLAD 185
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
++ ++ ++ + +N+ G +R G+K VI G PN GKSSL+N L K+ +
Sbjct: 186 GKVSADLQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IVT I GTTRDV+ +H+ I G P+ ++DTAGLR SD +E G
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR-DASDAVEKIG 284
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + +++ + +PRYA D + L
Sbjct: 4 DTIVAQATALGRGGVGIIRVSGPLAAHVAQTVTG----RTLRPRYAEYLPFTDENGQ-QL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALFFPNPHSFTGEDVLELQG 82
>gi|153830815|ref|ZP_01983482.1| tRNA modification GTPase TrmE [Vibrio cholerae 623-39]
gi|148873699|gb|EDL71834.1| tRNA modification GTPase TrmE [Vibrio cholerae 623-39]
Length = 453
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 174/344 (50%), Gaps = 80/344 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVS----KPRYASLRNIVDPVSEVVLDEGLCL 154
G+ GV +IRVSGP +A + Q V+ +PRYA D + LD+G+ L
Sbjct: 14 GRGGVGIIRVSGP--------LAAHVAQTVTGRTLRPRYAEYLPFTDENGQQ-LDQGIAL 64
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
+FP P+SFTGED E Q HG V++ ++ + ++ G+RPA PGEFS+RAF N+K+DLTQ
Sbjct: 65 FFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQINGVRPARPGEFSERAFLNDKMDLTQ 124
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
EA+ DLI A +E
Sbjct: 125 AEAIADLIDASSE----------------------------------------------- 137
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IED 331
+S + L G K RI + ++S+I L VEA IDF E+EI + D
Sbjct: 138 --QAAKSALQSLQGEFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLAD 185
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
++ ++ ++ + +N+ G +R G+K VI G PN GKSSL+N L K+ +
Sbjct: 186 GKVSADLQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IVT I GTTRDV+ +H+ I G P+ ++DTAGLR SD +E G
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR-DASDAVEKIG 284
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + +++ + +PRYA D + L
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTG----RTLRPRYAEYLPFTDENGQ-QL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALFFPNPHSFTGEDVLELQG 82
>gi|449144919|ref|ZP_21775730.1| thiophene and furan oxidation protein ThdF [Vibrio mimicus CAIM
602]
gi|449079439|gb|EMB50362.1| thiophene and furan oxidation protein ThdF [Vibrio mimicus CAIM
602]
Length = 453
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 174/344 (50%), Gaps = 80/344 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVS----KPRYASLRNIVDPVSEVVLDEGLCL 154
G+ GV +IRVSGP +A + Q V+ +PRYA D + LD+G+ L
Sbjct: 14 GRGGVGIIRVSGP--------LAAHVAQTVTGRTLRPRYAEYLPFTDENGQQ-LDQGIAL 64
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
+FP P+SFTGED E Q HG V++ ++ + ++ G+RPA PGEFS+RAF N+K+DLTQ
Sbjct: 65 FFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQINGVRPARPGEFSERAFLNDKMDLTQ 124
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
EA+ DLI A +E
Sbjct: 125 AEAIADLIDASSE----------------------------------------------- 137
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IED 331
+S + L G K RI + ++S+I L VEA IDF E+EI + D
Sbjct: 138 --QAAKSALQSLQGEFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLAD 185
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
++ ++ ++ + +N+ G +R G+K VI G PN GKSSL+N L K+ +
Sbjct: 186 GKVSADLQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IVT I GTTRDV+ +H+ I G P+ ++DTAGLR SD +E G
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR-DASDAVEKIG 284
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + +++ + +PRYA D + L
Sbjct: 4 DTIVAQATALGRGGVGIIRVSGPLAAHVAQTVTG----RTLRPRYAEYLPFTDENGQ-QL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALFFPNPHSFTGEDVLELQG 82
>gi|258622951|ref|ZP_05717966.1| tRNA modification GTPase [Vibrio mimicus VM573]
gi|258584734|gb|EEW09468.1| tRNA modification GTPase [Vibrio mimicus VM573]
Length = 464
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 174/344 (50%), Gaps = 80/344 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVS----KPRYASLRNIVDPVSEVVLDEGLCL 154
G+ GV +IRVSGP +A + Q V+ +PRYA D + LD+G+ L
Sbjct: 25 GRGGVGIIRVSGP--------LAAHVAQTVTGRTLRPRYAEYLPFTDENGQQ-LDQGIAL 75
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
+FP P+SFTGED E Q HG V++ ++ + ++ G+RPA PGEFS+RAF N+K+DLTQ
Sbjct: 76 FFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQINGVRPARPGEFSERAFLNDKMDLTQ 135
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
EA+ DLI A +E
Sbjct: 136 AEAIADLIDASSE----------------------------------------------- 148
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IED 331
+S + L G K RI + ++S+I L VEA IDF E+EI + D
Sbjct: 149 --QAAKSALQSLQGEFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLAD 196
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
++ ++ ++ + +N+ G +R G+K VI G PN GKSSL+N L K+ +
Sbjct: 197 GKVSADLQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 252
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IVT I GTTRDV+ +H+ I G P+ ++DTAGLR SD +E G
Sbjct: 253 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR-DASDAVEKIG 295
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + +++ + +PRYA D + L
Sbjct: 15 DTIVAQATALGRGGVGIIRVSGPLAAHVAQTVTG----RTLRPRYAEYLPFTDENGQ-QL 69
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 70 DQGIALFFPNPHSFTGEDVLELQG 93
>gi|77361917|ref|YP_341492.1| tRNA modification GTPase TrmE [Pseudoalteromonas haloplanktis
TAC125]
gi|123589159|sp|Q3IK56.1|MNME_PSEHT RecName: Full=tRNA modification GTPase MnmE
gi|76876828|emb|CAI88050.1| enzyme adding cmnm(5) to tRNA-s(2)U34, forming (with subsequent
MnmG action) cmnm(5)s(2)U34-tRNA, an intermediate in
mnm(5)s(2)U34-tRNA synthesis [Pseudoalteromonas
haloplanktis TAC125]
Length = 454
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 120/337 (35%), Positives = 173/337 (51%), Gaps = 66/337 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSG + KS+A K+ K RYA E LD+G+ ++F
Sbjct: 15 GRGGVGIIRVSG----SLAKSVAEKVVGKIPKVRYADYVPFKSLAGEQ-LDQGIAIYFAG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L ++K+ G+R A+PGEFS+RAF N+KLDLTQ EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVVLDMLLKEISKIEGVRLAKPGEFSERAFMNDKLDLTQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G + + ++ VEA IDF ++EI + L+
Sbjct: 130 ADLINATSEQAAKSALQSLQGEFSKHIETLVEKVIHLRMYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
++ + ++I LNTV
Sbjct: 187 -----------------------GKVSGDLDAIIAQ-------------------LNTVT 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
Q Q GSI +R G++ VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 DQAKQ--GSI-------------MREGMRVVIAGRPNAGKSSLLNALAGREAAIVTEIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDV+ +H+ I G P+ ++DTAGLR + D++E G
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLR-ESPDLVEQIG 285
>gi|319409465|emb|CBI83114.1| tRNA modification GTPase [Bartonella schoenbuchensis R1]
Length = 435
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 116/330 (35%), Positives = 164/330 (49%), Gaps = 66/330 (20%)
Query: 102 GVSVIRVSGPDTLNALKSM-ACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+V+R+SGP +N +K++ C P K R+ N++ LD L ++FP P+
Sbjct: 15 GVAVVRLSGPHVVNIVKTLCGCLP-----KARFMHYGNLI-ARDGSFLDSALTVFFPGPH 68
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDC EF +HG AV+N L L+ P R AE GEFS+RAF K+DL Q EAL D
Sbjct: 69 SFTGEDCAEFHLHGGKAVVNRFLDELSAFPECRIAEAGEFSRRAFTEGKIDLIQAEALAD 128
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI+AETE QR+ A+ G+L +LY WR ++ + A +EA IDFS+++ I D+I + +
Sbjct: 129 LIEAETEGQRRLAVIGTSGHLTKLYRGWRNELITARALIEAEIDFSDEDDIPDSISDEIW 188
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
+ +L S+ +HI + + + G++ VI A
Sbjct: 189 ENMKKLSCSLCEHIAAGERANI-LTDGLRVVIVGAP------------------------ 223
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
SG S+I N L + ++IVT GTT
Sbjct: 224 ----------------------NSGKSSII------------NRLAGRPVAIVTEEAGTT 249
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
RD +E L +GG PV DTAG R T S I
Sbjct: 250 RDALEIRLILGGLPVFFTDTAGFRKTESKI 279
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 90/206 (43%), Gaps = 29/206 (14%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSM-ACYPDQKVPKPRYASLRNIVDPVSKVV 86
+TIFALSSG GV+V+R+SGP +N +K++ C +PK R+ N++
Sbjct: 2 DTIFALSSGLLPSGVAVVRLSGPHVVNIVKTLCGC-----LPKARFMHYGNLI-ARDGSF 55
Query: 87 LDEGLCLWFPR-HGKCGVSVIRV---SGPDTLNA-LKSMACYPDQKVSKPRYASLRNIVD 141
LD L ++FP H G G +N L ++ +P+ ++++ S R +
Sbjct: 56 LDSALTVFFPGPHSFTGEDCAEFHLHGGKAVVNRFLDELSAFPECRIAEAGEFSRRAFTE 115
Query: 142 PVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGS--IAVINAILGALTKLPGLRPAEPGE 199
+++ E L D E + G +AVI G LTKL R
Sbjct: 116 GKIDLIQAEALA------------DLIEAETEGQRRLAVIGTS-GHLTKL--YRGWRNEL 160
Query: 200 FSKRAFFNNKLDLTQTEALGDLIQAE 225
+ RA ++D + + + D I E
Sbjct: 161 ITARALIEAEIDFSDEDDIPDSISDE 186
>gi|85712623|ref|ZP_01043670.1| tRNA modification GTPase [Idiomarina baltica OS145]
gi|85693614|gb|EAQ31565.1| tRNA modification GTPase [Idiomarina baltica OS145]
Length = 467
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 122/337 (36%), Positives = 166/337 (49%), Gaps = 75/337 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSM--ACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWF 156
G+ GV ++RVSGP ++ C P PR A D + LDEG+ L+F
Sbjct: 28 GRGGVGIVRVSGPQAKQVASALIGHCPP------PRKAEYVPFYDKEGHL-LDEGIALFF 80
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
PNSFTGED E Q HG +I+ I+ A+ +LP +RPA PGEFS+RAF N+KLDLTQ E
Sbjct: 81 KGPNSFTGEDVLELQGHGGPVLIDMIIKAILELPDIRPARPGEFSERAFLNDKLDLTQAE 140
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ DLI +E Q A K L+ L E+ ID D +I
Sbjct: 141 AIADLIDTNSE---QAA----KAALQSLKGEFSH-----------KIDVLVDAVI----- 177
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI---IEDNI 333
H+ + VEA IDF ++EI + +
Sbjct: 178 ----------------HLRMY-------------------VEAAIDFPDEEIDFLSDGKV 202
Query: 334 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIV 393
N + + QL HIE K G +R G++ VI G PN GKSSL+N L ++ +IV
Sbjct: 203 ANDLAEIIDQLF-----HIEQQAKQGTLMREGMRIVIAGRPNAGKSSLLNALAGRESAIV 257
Query: 394 TSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
T I GTTRDV+ +H+ I G P+ ++DTAGLR + +
Sbjct: 258 TEIAGTTRDVLREHIQIDGMPLHIIDTAGLRDSPDQV 294
>gi|70984128|ref|XP_747583.1| mitochondrial GTPase (Mss1) [Aspergillus fumigatus Af293]
gi|66845210|gb|EAL85545.1| mitochondrial GTPase (Mss1), putative [Aspergillus fumigatus Af293]
gi|159122369|gb|EDP47490.1| mitochondrial GTPase (Mss1), putative [Aspergillus fumigatus A1163]
Length = 604
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 114/342 (33%), Positives = 174/342 (50%), Gaps = 73/342 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSE----VVLDEG-LC 153
G+ ++V+RVSG + +++ P + + R A++R + DP E VLD G L
Sbjct: 75 GRAAIAVVRVSGSACVQIYRALC--PSAPLPRARVAAVRTLYDPTQEPSANTVLDAGALV 132
Query: 154 LWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL----PGLRPAEPGEFSKRAFFNNK 209
L+FP P + TGED E +HG A++ ++L A+ + +R AEPGEF++RAF NN+
Sbjct: 133 LYFPGPKTVTGEDVLELHLHGGPAIVKSVLAAIARSNRPESTVRYAEPGEFTRRAFMNNR 192
Query: 210 LDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDE 269
LDL Q EALGD + A+TE QR+ A+ L + Y W
Sbjct: 193 LDLPQIEALGDTLTADTEQQRRLAVRGASDALSRRYESW--------------------- 231
Query: 270 IIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEII 329
R Q++ G +E A IDFSED+
Sbjct: 232 ----------RQQLLYARGELE---------------------------ALIDFSEDQYF 254
Query: 330 EDNILNTVRS---QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLC 386
+++ + VRS QV L + HIE ++K G +R+GIK ++G PN GKSSL+N +
Sbjct: 255 DESPEDFVRSVAGQVRALQTQLRLHIENASK-GELLRNGIKIALLGAPNAGKSSLLNRIV 313
Query: 387 QKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428
K+ +IV++ GTTRD+++ +D+GG+ L D AG+R+ S
Sbjct: 314 GKEAAIVSTEEGTTRDIVDVGVDLGGWYCKLGDMAGIRSEKS 355
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 144/298 (48%), Gaps = 76/298 (25%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPV- 82
L +TI+ALS+ G+ ++V+RVSG + +++ P +P+ R A++R + DP
Sbjct: 61 LEADSTIYALSTAPGRAAIAVVRVSGSACVQIYRALC--PSAPLPRARVAAVRTLYDPTQ 118
Query: 83 ---SKVVLDEG-LCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRN 138
+ VLD G L L+FP GP T+
Sbjct: 119 EPSANTVLDAGALVLYFP-------------GPKTV------------------------ 141
Query: 139 IVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL----PGLRP 194
TGED E +HG A++ ++L A+ + +R
Sbjct: 142 ------------------------TGEDVLELHLHGGPAIVKSVLAAIARSNRPESTVRY 177
Query: 195 AEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILE 254
AEPGEF++RAF NN+LDL Q EALGD + A+TE QR+ A+ L + Y WRQ +L
Sbjct: 178 AEPGEFTRRAFMNNRLDLPQIEALGDTLTADTEQQRRLAVRGASDALSRRYESWRQQLLY 237
Query: 255 SLASVEAYIDFSEDEIIEDNILNTVRS---QVVQLHGSIEKHIELSNKCGVRIRSGIK 309
+ +EA IDFSED+ +++ + VRS QV L + HIE ++K G +R+GIK
Sbjct: 238 ARGELEALIDFSEDQYFDESPEDFVRSVAGQVRALQTQLRLHIENASK-GELLRNGIK 294
>gi|444334405|ref|ZP_21149960.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
gi|443550450|gb|ELT58746.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
Length = 451
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 170/335 (50%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEV---VLDEGLCLW 155
G+ G+ ++RVSGP + + + K KPR A P E VLD+G+ L+
Sbjct: 13 GRGGIGILRVSGPKAIEVAQVVLG----KCPKPRMADYL----PFKEADGTVLDQGIALY 64
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
F PNSFTGED E Q HG V++ +L + ++ G+R A PGEFS++AF N+KLDL Q
Sbjct: 65 FKGPNSFTGEDVLELQGHGGQVVLDLLLKRILRIEGIRLARPGEFSEQAFLNDKLDLAQA 124
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
EA+ DLI A +E + AL ++G ++ ++ VEA IDF ++EI D +
Sbjct: 125 EAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEEI--DFL 182
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILN 335
+ G IE H+ + II L+
Sbjct: 183 AD----------GKIEGHL-------------------------------NNIIAQ--LD 199
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
VR++ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 200 KVRAEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNTLAGREAAIVTD 244
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ + G P+ ++DTAGLR T ++
Sbjct: 245 IAGTTRDVLREHIHLDGMPLHIIDTAGLRDATDEV 279
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP + + + K PKPR A +
Sbjct: 1 MKETIVAQATAPGRGGIGILRVSGPKAIEVAQVVLG----KCPKPRMADYLPFKE-ADGT 55
Query: 86 VLDEGLCLWF 95
VLD+G+ L+F
Sbjct: 56 VLDQGIALYF 65
>gi|421780982|ref|ZP_16217455.1| tRNA modification GTPase TrmE [Serratia plymuthica A30]
gi|407756654|gb|EKF66764.1| tRNA modification GTPase TrmE [Serratia plymuthica A30]
Length = 455
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 119/352 (33%), Positives = 176/352 (50%), Gaps = 75/352 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +A +++ K+ KPRYA D LD+G+ LWFP
Sbjct: 16 GRGGVGILRISGRGAKDAAQALLG----KLPKPRYADYLPFRDAAG-ATLDQGIALWFPG 70
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 71 PNSFTGEDVLELQGHGGPVILDLLLKRVLALPGVRIARPGEFSERAFLNDKLDLAQAEAI 130
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 131 ADL-----------------------------------------IDASSEQ--------A 141
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEIIEDNILNTV 337
RS + L G+ RI ++++ L VEA IDF ++EI + L+
Sbjct: 142 ARSAMNSLQGAFS----------TRIHQLVEALTHLRIYVEAAIDFPDEEI---DFLSDG 188
Query: 338 RSQVVQLHGSIEK--HIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+ + QL+G + ++ + G +R G+K VI G PN GKSSL+N L + +IVT
Sbjct: 189 KIEA-QLNGVMASLANVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTD 247
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI----IETEGNLLEKNNQ 443
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++ IE N +E+ ++
Sbjct: 248 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADR 299
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +A +++ K+PKPRYA D + L
Sbjct: 6 DTIVAQATPPGRGGVGILRISGRGAKDAAQALLG----KLPKPRYADYLPFRD-AAGATL 60
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 61 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVLALPGVRIARPGEFSERAFLN 119
>gi|422851541|ref|ZP_16898211.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK150]
gi|325694429|gb|EGD36338.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK150]
Length = 457
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 121/339 (35%), Positives = 175/339 (51%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + +SK +L +IVDP ++ +LDE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKI--FKGKNLSKVESHTLNYGHIVDPQNQEILDEVMVGAM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 RSPKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARMAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL +LA VE ID+ E + +E+
Sbjct: 134 AVMDIIRAKTDKAMNNAVKQLDGSLFNLINNTRQEILNTLAQVEVNIDYPEYDDVEEMTT 193
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
+R + A EA + N+LNT
Sbjct: 194 QLMREKT-------------------------------AEFEALL---------SNLLNT 213
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
R G I +R GI + I+G PNVGKSSL+N L + +IVT I
Sbjct: 214 AR------RGKI-------------LREGISTAIIGRPNVGKSSLLNNLLCEDKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 255 EGTTRDVIEEYVNIKGVPLKLIDTAGIR-ETDDLVEQIG 292
>gi|312623584|ref|YP_004025197.1| tRNA modification GTPase trme [Caldicellulosiruptor kronotskyensis
2002]
gi|312204051|gb|ADQ47378.1| tRNA modification GTPase TrmE [Caldicellulosiruptor kronotskyensis
2002]
Length = 455
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 126/343 (36%), Positives = 182/343 (53%), Gaps = 73/343 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKP---RYASLRNIVDPVSEVVLDEGLCLW 155
G G+ ++R+SG + + + + K K RYA+L ++ D + +DE + +
Sbjct: 14 GTGGIGIVRISGKNAFDIAQKLIRSRKYKTVKDIPIRYAALVDVYD--GDEFVDEAILIK 71
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
F P+S+TGED E Q HG + V+ IL A K G R A PGEF+KRAF N ++DL+Q
Sbjct: 72 FKSPHSYTGEDVVEIQSHGGMVVLKRILEAAIK-NGARHAMPGEFTKRAFLNGRIDLSQA 130
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
EA+ D+I + + + L Q
Sbjct: 131 EAVIDIINS-----KTRLLQQ--------------------------------------- 146
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSE---DEIIEDN 332
N + QL G + + IE ++ + + +AS+EA IDFSE DE+ +D
Sbjct: 147 -NAAK----QLKGMLSRRIEEISQLLLNM---------VASIEASIDFSEHEVDEVSKDE 192
Query: 333 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
IL T+ + + + IEK I+ S + G I+SGI +VIVG PNVGKSSL+N L +++ +I
Sbjct: 193 ILFTIDAALEK----IEKLIK-SYETGKVIKSGIYTVIVGRPNVGKSSLLNRLLKEEKAI 247
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
VT IPGTTRDVIE+ LDI G P+IL DTAG+R T DI+E G
Sbjct: 248 VTDIPGTTRDVIEEVLDIEGVPIILADTAGVR-KTEDIVEKIG 289
>gi|163745111|ref|ZP_02152471.1| tRNA modification GTPase TrmE [Oceanibulbus indolifex HEL-45]
gi|161381929|gb|EDQ06338.1| tRNA modification GTPase TrmE [Oceanibulbus indolifex HEL-45]
Length = 428
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 118/333 (35%), Positives = 164/333 (49%), Gaps = 67/333 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV+VIR+SGP ++A K + R + LRN+ + EV+ D+ L L FP
Sbjct: 12 GRAGVAVIRISGPQAF----AIAHKISGKQPEGRTSVLRNLQNAAGEVI-DQALVLSFPG 66
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED EFQ+HGSIAV+ A+L L++ P R AE GEF++RA N KLDL Q
Sbjct: 67 PNSFTGEDVIEFQLHGSIAVVRAMLATLSEFPDTRIAEAGEFTRRALENEKLDLAQ---- 122
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
VE D E E
Sbjct: 123 ----------------------------------------VEGLADLIEAET------EA 136
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASV-EAYIDFSEDEIIEDNILNTV 337
R Q V++ LS G R+ K +I A++ EA IDF+++E+ D + V
Sbjct: 137 QRKQAVRV---------LSGHLGARVEDWRKDLIRAAALLEATIDFADEEVPID-VTPEV 186
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+ ++ ++ I R+RSG + I+G PN GKS+L+N L + +I + +
Sbjct: 187 NDLLTKVGAELKAEIR-GTHVAERVRSGFEVAIIGPPNAGKSTLLNALAGRDAAITSELA 245
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRDVIE +D+GG PV LLDTAGLR + I
Sbjct: 246 GTTRDVIEVRMDLGGLPVTLLDTAGLRDSEDQI 278
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 10/131 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFA +S G+ GV+VIR+SGP ++A K P+ R + LRN+ + +V+
Sbjct: 2 DTIFAQASAPGRAGVAVIRISGPQAF----AIAHKISGKQPEGRTSVLRNLQNAAGEVI- 56
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSGPDTLNALKSMAC----YPDQKVSKPRYASLRNIVDP 142
D+ L L FP + G VI ++ +++M +PD ++++ + R + +
Sbjct: 57 DQALVLSFPGPNSFTGEDVIEFQLHGSIAVVRAMLATLSEFPDTRIAEAGEFTRRALENE 116
Query: 143 VSEVVLDEGLC 153
++ EGL
Sbjct: 117 KLDLAQVEGLA 127
>gi|240138138|ref|YP_002962610.1| tRNA modification GTPase trmE [Methylobacterium extorquens AM1]
gi|418060732|ref|ZP_12698630.1| tRNA modification GTPase TrmE [Methylobacterium extorquens DSM
13060]
gi|240008107|gb|ACS39333.1| tRNA modification GTPase trmE [Methylobacterium extorquens AM1]
gi|373565719|gb|EHP91750.1| tRNA modification GTPase TrmE [Methylobacterium extorquens DSM
13060]
Length = 444
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 121/352 (34%), Positives = 170/352 (48%), Gaps = 76/352 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ V+V+R+SGP AL +A + +PR SLR + DP S +LD+ L W P
Sbjct: 20 GRAAVTVVRISGPAAGLALDRLAG----RRPEPRRLSLRRLRDPDSRDLLDQALVAWLPG 75
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P + TGED E +HG +AV +A+L AL ++PG RPAE G FS+RAF N +
Sbjct: 76 PATATGEDMAELHLHGGLAVRSAVLRALGRVPGCRPAEAGAFSRRAFLNGR--------- 126
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
ID +E E I D I
Sbjct: 127 --------------------------------------------IDLTEAEGIADLIDAE 142
Query: 279 VRSQVVQ----LHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFS-EDEIIEDNI 333
+Q VQ L G++ + + + G+ + LA EA +DF+ E ++ ED +
Sbjct: 143 TEAQRVQALRQLDGALGRQVAAWRETGIDL---------LAGAEAALDFADEGDVDEDGL 193
Query: 334 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIV 393
+ + L +I + + G R+R G V+VG PN GKS+L+N L + +IV
Sbjct: 194 DAALSGRATALRDAIRAALA-DGRRGERLREGFCVVLVGAPNAGKSTLLNALSGRDAAIV 252
Query: 394 TSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKNNQQR 445
+ IPGTTRD IE D+GG PV+L+DTAGLR T+D IE EG K Q R
Sbjct: 253 SDIPGTTRDTIEVRCDLGGLPVVLVDTAGLR-ETADAIEAEGV---KRTQSR 300
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 133/282 (47%), Gaps = 67/282 (23%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFA +SG G+ V+V+R+SGP AL +A + P+PR SLR + DP S+ +L
Sbjct: 10 DTIFAPASGFGRAAVTVVRISGPAAGLALDRLAG----RRPEPRRLSLRRLRDPDSRDLL 65
Query: 88 DEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVV 147
D+ L W P GP T + ++E+
Sbjct: 66 DQALVAWLP-------------GPATATG------------------------EDMAELH 88
Query: 148 LDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFN 207
L GL + AV+ A+ ++PG RPAE G FS+RAF N
Sbjct: 89 LHGGLAV--------------------RSAVLRAL----GRVPGCRPAEAGAFSRRAFLN 124
Query: 208 NKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFS- 266
++DLT+ E + DLI AETE QR +AL Q+ G L + + WR+ ++ LA EA +DF+
Sbjct: 125 GRIDLTEAEGIADLIDAETEAQRVQALRQLDGALGRQVAAWRETGIDLLAGAEAALDFAD 184
Query: 267 EDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGI 308
E ++ ED + + + L +I + + G R+R G
Sbjct: 185 EGDVDEDGLDAALSGRATALRDAIRAALA-DGRRGERLREGF 225
>gi|270264114|ref|ZP_06192381.1| tRNA modification GTPase mnmE [Serratia odorifera 4Rx13]
gi|270041763|gb|EFA14860.1| tRNA modification GTPase mnmE [Serratia odorifera 4Rx13]
Length = 455
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 119/352 (33%), Positives = 176/352 (50%), Gaps = 75/352 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +A +++ K+ KPRYA D LD+G+ LWFP
Sbjct: 16 GRGGVGILRISGRGAKDAAQALLG----KLPKPRYADYLPFRDAAG-ATLDQGIALWFPG 70
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 71 PNSFTGEDVLELQGHGGPVILDLLLKRVLALPGVRIARPGEFSERAFLNDKLDLAQAEAI 130
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 131 ADL-----------------------------------------IDASSEQ--------A 141
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEIIEDNILNTV 337
RS + L G+ RI ++++ L VEA IDF ++EI + L+
Sbjct: 142 ARSAMNSLQGAFS----------TRIHQLVEALTHLRIYVEAAIDFPDEEI---DFLSDG 188
Query: 338 RSQVVQLHGSIEK--HIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+ + QL+G + ++ + G +R G+K VI G PN GKSSL+N L + +IVT
Sbjct: 189 KIEA-QLNGVMADLDNVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTD 247
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI----IETEGNLLEKNNQ 443
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++ IE N +E+ ++
Sbjct: 248 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADR 299
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +A +++ K+PKPRYA D + L
Sbjct: 6 DTIVAQATPPGRGGVGILRISGRGAKDAAQALLG----KLPKPRYADYLPFRD-AAGATL 60
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 61 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVLALPGVRIARPGEFSERAFLN 119
>gi|402772735|ref|YP_006592272.1| tRNA modification GTPase TrmE [Methylocystis sp. SC2]
gi|401774755|emb|CCJ07621.1| tRNA modification GTPase TrmE [Methylocystis sp. SC2]
Length = 432
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 174/340 (51%), Gaps = 70/340 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ ++VIR+SGP T AL ++A K +PR AS + DP + +LD G+ L+FP
Sbjct: 15 GRAAIAVIRISGPGTGEALTALAG----KRLEPRQASFAVLRDPQTGEMLDRGIALFFPG 70
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P S TGED E Q+HG A++ L AL + PGLRPAEPGEF++R+F N KL
Sbjct: 71 PASSTGEDYGELQLHGGRAIVEGALAALHRRPGLRPAEPGEFARRSFANGKL-------- 122
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL QAE L L A EA
Sbjct: 123 -DLSQAEA--------------LADLID----------AQTEAQ---------------- 141
Query: 279 VRSQVVQLHG-SIEKHIELSNKCGVRIRSGIKSVIC--LASVEAYIDFSEDEIIEDNILN 335
R Q +++ G ++ + +E G ++ + LA VEA +DFS++ +
Sbjct: 142 -RRQALRVAGGALRRKVE-----------GWRAALVESLAVVEAELDFSDEADVGAFSPA 189
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+ + + L + + L+ R+R G +I+G PN GKS+L+N L ++ ++IV+
Sbjct: 190 RLSALLSPLAEDMRAALRLA-PASERMRDGFVVMILGRPNAGKSTLINALTRRDLAIVSP 248
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IPGTTRD+IE HL+IGG PV L+DTAGLR +D IE G
Sbjct: 249 IPGTTRDMIEAHLEIGGLPVTLIDTAGLR-EAADAIERIG 287
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
+ ++TIFAL +G G+ ++VIR+SGP T AL ++A K +PR AS + DP +
Sbjct: 1 MTAQDTIFALGTGAGRAAIAVIRISGPGTGEALTALAG----KRLEPRQASFAVLRDPQT 56
Query: 84 KVVLDEGLCLWFP 96
+LD G+ L+FP
Sbjct: 57 GEMLDRGIALFFP 69
>gi|261346747|ref|ZP_05974391.1| tRNA modification GTPase TrmE [Providencia rustigianii DSM 4541]
gi|282565147|gb|EFB70682.1| tRNA modification GTPase TrmE [Providencia rustigianii DSM 4541]
Length = 454
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSGP +++ K+ KPRYA D V VLD+G+ ++FP
Sbjct: 15 GRGGVGILRVSGPKAALVAETVLG----KLPKPRYAEYLPFRD-VDGSVLDQGIAIYFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + + +R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLRRILTIGAIRIANPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + A++ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSAMNSLQGAFSSHIHQLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+++D L VR
Sbjct: 186 --------DGKIEAKL-------------------------------NEVVDD--LEQVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
SQ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 SQARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
+ I +TI A ++ G+ GV ++RVSGP +++ K+PKPRYA D V
Sbjct: 1 MQINDTIVAQATPPGRGGVGILRVSGPKAALVAETVLG----KLPKPRYAEYLPFRD-VD 55
Query: 84 KVVLDEGLCLWFP 96
VLD+G+ ++FP
Sbjct: 56 GSVLDQGIAIYFP 68
>gi|333929843|ref|YP_004503422.1| tRNA modification GTPase mnmE [Serratia sp. AS12]
gi|333934796|ref|YP_004508374.1| tRNA modification GTPase mnmE [Serratia plymuthica AS9]
gi|386331666|ref|YP_006027836.1| tRNA modification GTPase mnmE [Serratia sp. AS13]
gi|333476403|gb|AEF48113.1| tRNA modification GTPase mnmE [Serratia plymuthica AS9]
gi|333493903|gb|AEF53065.1| tRNA modification GTPase mnmE [Serratia sp. AS12]
gi|333963999|gb|AEG30772.1| tRNA modification GTPase mnmE [Serratia sp. AS13]
Length = 454
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 119/352 (33%), Positives = 176/352 (50%), Gaps = 75/352 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +A +++ K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISGRGAKDAAQALLG----KLPKPRYADYLPFRDAAG-TTLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRVLALPGVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEIIEDNILNTV 337
RS + L G+ RI ++++ L VEA IDF ++EI + L+
Sbjct: 141 ARSAMNSLQGAFS----------TRIHQLVEALTHLRIYVEAAIDFPDEEI---DFLSDG 187
Query: 338 RSQVVQLHGSIEK--HIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+ + QL+G + ++ + G +R G+K VI G PN GKSSL+N L + +IVT
Sbjct: 188 KIEA-QLNGVMADLDNVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTD 246
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI----IETEGNLLEKNNQ 443
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++ IE N +E+ ++
Sbjct: 247 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADR 298
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
++ +TI A ++ G+ GV ++R+SG +A +++ K+PKPRYA D +
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRISGRGAKDAAQALLG----KLPKPRYADYLPFRD-AA 55
Query: 84 KVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRN 138
LD+G+ LWFP + G V+ + GP L+ LK + P ++++P S R
Sbjct: 56 GTTLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVLALPGVRIARPGEFSERA 115
Query: 139 IVD 141
++
Sbjct: 116 FLN 118
>gi|402820064|ref|ZP_10869631.1| trmE protein [alpha proteobacterium IMCC14465]
gi|402510807|gb|EJW21069.1| trmE protein [alpha proteobacterium IMCC14465]
Length = 444
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 115/337 (34%), Positives = 166/337 (49%), Gaps = 65/337 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ +++IR+SG T L+ + P + R ASLR I +P + +D GL L+F
Sbjct: 11 GRGAIAIIRLSGDQTAPILEKLTGKP---APEARQASLRIITEPETGDPIDSGLVLYFQA 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+S+TGED E +HG +A+++ +L L+ L GLRPAEPGEF++ A N ++DLTQ EA+
Sbjct: 68 PHSYTGEDMAELHIHGGVAIVDRLLDVLSGLEGLRPAEPGEFTRLAVLNGRMDLTQAEAV 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I AET Q+++A QM+G L LY WRQ + SLA +EA I+F+ DE + I
Sbjct: 128 ADMIDAETMAQQKQAFRQMQGALGVLYESWRQKLATSLAHLEADIEFA-DEDLPGGIGQA 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
V +V L I HI + G +R G++ I A + + ++LN
Sbjct: 187 VLGEVAALSDEIAAHIH--DDRGRTLRHGVEIAIIGAP----------NVGKSSLLN--- 231
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
HI V R+G
Sbjct: 232 ------------HIAGREAAIVSARAG--------------------------------- 246
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD++E L +GG P +L DTAG+R D IE EG
Sbjct: 247 TTRDIVEVSLTLGGVPALLADTAGIR-AAGDEIEREG 282
>gi|312794739|ref|YP_004027662.1| tRNA modification gtpase trme [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312181879|gb|ADQ42049.1| tRNA modification GTPase TrmE [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 455
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 128/344 (37%), Positives = 178/344 (51%), Gaps = 75/344 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMA---CYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLW 155
G G+ ++R+SG D + + + Y K RYA+L ++ D + +DE + +
Sbjct: 14 GTGGIGIVRISGKDAFDIAEKLIRSRKYKSIKDIPARYAALVDVYD--GDEFVDEAILIK 71
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
F P+S+TGED E Q HG + V+ IL A K G R A PGEF+KRAF N ++DL+Q
Sbjct: 72 FKSPHSYTGEDIVEIQSHGGMVVLKRILEAAIK-NGARHAMPGEFTKRAFLNGRIDLSQA 130
Query: 216 EALGDLIQAETE-LQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
EA+ D+I ++T LQ+ A KQL Q I E I
Sbjct: 131 EAVIDIINSKTRLLQQNAA--------KQLKGMLSQRIEE----------------ISQL 166
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSE---DEIIED 331
+LN V AS+EA IDFSE DE+
Sbjct: 167 LLNLV-----------------------------------ASIEASIDFSEHEVDEVPHT 191
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
IL+TV + + ++ ++ S + G I+SGI +VIVG PNVGKSSL+N L +++ +
Sbjct: 192 EILSTVDAALQKIDKLLK-----SYETGKAIKSGIYTVIVGRPNVGKSSLLNRLLKEEKA 246
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IVT IPGTTRDVIE+ LDI G P+IL DTAG+R T D++E G
Sbjct: 247 IVTDIPGTTRDVIEEVLDIEGIPIILADTAGVR-KTEDVVEKIG 289
>gi|222153198|ref|YP_002562375.1| tRNA modification GTPase TrmE [Streptococcus uberis 0140J]
gi|222114011|emb|CAR42339.1| tRNA modification GTPase TrmE [Streptococcus uberis 0140J]
Length = 458
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 172/337 (51%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG + L K + D + + +I+DP +LDE + +
Sbjct: 18 GEGAIGIVRLSGTEALAIAKKVFKGKDLEAVASHTINYGHILDPEKNEILDEVMVTVMKE 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L K G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 78 PKTFTREDVVEINTHGGIAVTNEILQLLIK-NGARMAEPGEFTKRAFLNGRVDLTQAEAV 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+LK+L + RQ ILNT
Sbjct: 137 MDIIRAKTDKAMNIAVKQLDGSLKELINSTRQ-----------------------EILNT 173
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ +R
Sbjct: 174 -----------------------------------LAQVEVNIDYPEYDDVEEMTTALMR 198
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + +E+ + + K G +R G+ + I+G PNVGKSSL+N L +++ +IVT I G
Sbjct: 199 EKTQEFQNLLEQLLRTA-KRGKILREGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIAG 257
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 258 TTRDVIEEYVNIKGVPLKLVDTAGIR-DTDDIVEKIG 293
>gi|372277406|ref|ZP_09513442.1| tRNA modification GTPase TrmE [Pantoea sp. SL1_M5]
gi|390436482|ref|ZP_10225020.1| tRNA modification GTPase TrmE [Pantoea agglomerans IG1]
Length = 454
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 163/334 (48%), Gaps = 69/334 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + + K+ KPRYA D V LD+G+ LWFP
Sbjct: 15 GRGGVGILRVSGAQAAEVARQLLG----KLPKPRYADYLPFTDSDGRV-LDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRIVALPGVRIAQPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS V L G I + +R VEA IDF ++EI + L+ R
Sbjct: 141 ARSAVNSLQGVFSTRINHLVEALTHLR---------IYVEAAIDFPDEEI---DFLSDGR 188
Query: 339 --SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+Q+ + G ++ + + G +R G+K VI G PN GKSSL+N L + +IVT I
Sbjct: 189 IEAQLNTVIGDLDA-VRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTDI 247
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 248 AGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++RVSG + + K+PKPRYA D +V L
Sbjct: 5 DTIVAQATPPGRGGVGILRVSGAQAAEVARQLLG----KLPKPRYADYLPFTDSDGRV-L 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVALPGVRIAQPGEFSERAFLN 118
>gi|16272938|ref|NP_439164.1| tRNA modification GTPase TrmE [Haemophilus influenzae Rd KW20]
gi|1574033|gb|AAC22664.1| thiophene and furan oxidation protein (thdF) [Haemophilus
influenzae Rd KW20]
Length = 461
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 114/332 (34%), Positives = 168/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++RVSGP +++ K KPR A D +LD+G+ L+F
Sbjct: 22 GRGGIGILRVSGPLATKVAQAILG----KCPKPRMADYLPFKD-ADGTILDQGIALYFKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L + ++ G+R A PGEFS++AF N+KLDL Q EA+
Sbjct: 77 PNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLDLAQAEAI 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G + +E ++ VEA IDF ++EI D + +
Sbjct: 137 ADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEEI--DFLADG 194
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+I + ++ +I N L VR
Sbjct: 195 ------------------------KIEANLRGII-------------------NQLEDVR 211
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S+ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 212 SEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR ++
Sbjct: 257 TTRDVLREHIHIDGMPLHIIDTAGLRDAIDEV 288
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP +++ K PKPR A D
Sbjct: 10 MKETIVAQATAPGRGGIGILRVSGPLATKVAQAILG----KCPKPRMADYLPFKD-ADGT 64
Query: 86 VLDEGLCLWF 95
+LD+G+ L+F
Sbjct: 65 ILDQGIALYF 74
>gi|422006871|ref|ZP_16353859.1| tRNA modification GTPase TrmE [Providencia rettgeri Dmel1]
gi|414098062|gb|EKT59712.1| tRNA modification GTPase TrmE [Providencia rettgeri Dmel1]
Length = 454
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 168/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSGP +A K+ KPRYA D V LD+G+ L+FP
Sbjct: 15 GRGGVGILRVSGPKA----AQIAEIVLGKLPKPRYADYLPFRDEDGSV-LDQGIALYFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + + G+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLRRILTIDGIRIANPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + A++ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSAMNSLQGAFSSHIHQLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E++ D L VR
Sbjct: 187 ---------GKIEAKL-------------------------------NEVVAD--LEQVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
SQ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 SQARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
+ I +TI A ++ G+ GV ++RVSGP +A K+PKPRYA D
Sbjct: 1 MQINDTIVAQATPPGRGGVGILRVSGPKA----AQIAEIVLGKLPKPRYADYLPFRDE-D 55
Query: 84 KVVLDEGLCLWFP 96
VLD+G+ L+FP
Sbjct: 56 GSVLDQGIALYFP 68
>gi|398997445|ref|ZP_10700270.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM21]
gi|398124087|gb|EJM13610.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM21]
Length = 456
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 164/333 (49%), Gaps = 66/333 (19%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ GV ++R+SGP A K+++ + KPR+A + +E VLDEG+ L+FP
Sbjct: 15 QGRGGVGIVRISGPLASLAAKAISG----RELKPRFAHYGPFLS-ANEEVLDEGIALYFP 69
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
PNSFTGED E Q HG V++ +L +L G R A PGEFS+RAF N+KLDL Q EA
Sbjct: 70 GPNSFTGEDVLELQGHGGPIVLDMLLKRCLEL-GCRLARPGEFSERAFLNDKLDLAQAEA 128
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DLI+A + + AL ++G Q + ++ VEA IDF E+EI
Sbjct: 129 IADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEAAIDFPEEEI------- 181
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+ V A +D DE L+TV
Sbjct: 182 --------------------------------DFLADGHVLAMLDKVRDE------LSTV 203
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+ Q G +R G+ VI G PN GKSSL+N L ++ +IVT I
Sbjct: 204 LREAGQ---------------GALLRDGMTVVIAGRPNAGKSSLLNALAGREAAIVTEIA 248
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRD++ +H+ I G P+ ++DTAGLR T +
Sbjct: 249 GTTRDILREHIHIDGMPLHVVDTAGLRDTDDHV 281
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 25 AIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSK 84
A + TI A+++ G+ GV ++R+SGP A K+++ + KPR+A + ++
Sbjct: 3 APRETIAAVATAQGRGGVGIVRISGPLASLAAKAISG----RELKPRFAHYGPFLS-ANE 57
Query: 85 VVLDEGLCLWFP 96
VLDEG+ L+FP
Sbjct: 58 EVLDEGIALYFP 69
>gi|332163526|ref|YP_004300103.1| tRNA modification GTPase TrmE [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386310443|ref|YP_006006499.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Yersinia
enterocolitica subsp. palearctica Y11]
gi|418241576|ref|ZP_12868102.1| tRNA modification GTPase TrmE [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|433548886|ref|ZP_20504932.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Yersinia
enterocolitica IP 10393]
gi|318608032|emb|CBY29530.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Yersinia
enterocolitica subsp. palearctica Y11]
gi|325667756|gb|ADZ44400.1| tRNA modification GTPase TrmE [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330861751|emb|CBX71925.1| tRNA modification GTPase mnmE [Yersinia enterocolitica W22703]
gi|351778990|gb|EHB21117.1| tRNA modification GTPase TrmE [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|431789927|emb|CCO67972.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Yersinia
enterocolitica IP 10393]
Length = 454
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 119/335 (35%), Positives = 168/335 (50%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG A ++A K+ KPRYA D V LD+G+ L+FP
Sbjct: 15 GRGGVGILRVSG----RAAATVAQAVLGKLPKPRYADYLPFKD-VDGSTLDQGIALYFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
RS V L G+ VRI ++++ L VEA IDF ++EI + D
Sbjct: 141 ARSAVNSLQGAFS----------VRIHQLVEALTHLRIYVEAAIDFPDEEIDFLSDG--- 187
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+ Q+ + +E+ + + G +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 188 KIEGQLNGVMADLEQ-VRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 246
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 247 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
++ +TI A ++ G+ GV ++RVSG A ++A K+PKPRYA D V
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRVSG----RAAATVAQAVLGKLPKPRYADYLPFKD-VD 55
Query: 84 KVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRN 138
LD+G+ L+FP + G V+ + GP L+ LK + P ++++P S R
Sbjct: 56 GSTLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERA 115
Query: 139 IVD 141
++
Sbjct: 116 FLN 118
>gi|149190487|ref|ZP_01868758.1| tRNA modification GTPase TrmE [Vibrio shilonii AK1]
gi|148835741|gb|EDL52707.1| tRNA modification GTPase TrmE [Vibrio shilonii AK1]
Length = 474
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 119/335 (35%), Positives = 167/335 (49%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYAS-LRNIVDPVSEVVLDEGLCLWFP 157
G+ GV +IRVSGP +A K KPRYA L SE LD+G+ L+FP
Sbjct: 35 GRGGVGIIRVSGP----LAAEVALQVTGKTLKPRYADYLPFKAQDGSE--LDQGIALYFP 88
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P+SFTGED E Q HG V++ ++ + +PG+RPA PGEFS+RAF N+K+DLTQ EA
Sbjct: 89 NPHSFTGEDVLELQGHGGPVVMDMLIKRILLIPGVRPARPGEFSERAFLNDKMDLTQAEA 148
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DLI A +E
Sbjct: 149 IADLIDASSE-------------------------------------------------E 159
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI--IEDNILN 335
+S + L G K I++ + + +R VEA IDF E+EI + D +
Sbjct: 160 AAKSALQSLQGQFSKRIQVLVESLIHLR---------IYVEAAIDFPEEEIDFLADGKVA 210
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
++ S+ K +N+ G +R G+K VI G PN GKSSL+N L K+ +IVT
Sbjct: 211 GDLQHIIDNLESVRKE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTD 266
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 267 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 301
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 10/127 (7%)
Query: 20 RCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIV 79
R + +TI A ++ G+ GV +IRVSGP +A K KPRYA
Sbjct: 17 RLGNTMTTDTIVAQATAPGRGGVGIIRVSGP----LAAEVALQVTGKTLKPRYADYLPF- 71
Query: 80 DPVSKVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLNAL-KSMACYPDQKVSKPRYA 134
LD+G+ L+FP H G V+ + GP ++ L K + P + ++P
Sbjct: 72 KAQDGSELDQGIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILLIPGVRPARPGEF 131
Query: 135 SLRNIVD 141
S R ++
Sbjct: 132 SERAFLN 138
>gi|343499272|ref|ZP_08737255.1| tRNA modification GTPase TrmE [Vibrio tubiashii ATCC 19109]
gi|418479449|ref|ZP_13048531.1| tRNA modification GTPase TrmE [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342823147|gb|EGU57803.1| tRNA modification GTPase TrmE [Vibrio tubiashii ATCC 19109]
gi|384572960|gb|EIF03464.1| tRNA modification GTPase TrmE [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 453
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 114/332 (34%), Positives = 167/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP +A K +PRYA + D+G+ L+FP
Sbjct: 14 GRGGVGIIRVSGP----LAAQVATEVTGKELRPRYAEYLPFNSQDGHQI-DQGIALYFPN 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ ++ + ++PG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 69 PHSFTGEDVLELQGHGGPVVMDMLIKRILQIPGIRTARPGEFSERAFLNDKLDLAQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G + + ++ VEA IDF E+EI D + +
Sbjct: 129 ADLIDASSEEAAKSALQSLQGAFSGRINTLVESLIHLRIYVEAAIDFPEEEI--DFLADG 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
++ + ++++I DN L VR
Sbjct: 187 ------------------------KVAADLQTII------------------DN-LAAVR 203
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ Q G +R G+K VI G PN GKSSL+N L K+ +IVT I G
Sbjct: 204 KEATQ---------------GAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTDIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 249 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 280
>gi|123444347|ref|YP_001008312.1| tRNA modification GTPase TrmE [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|420260619|ref|ZP_14763296.1| tRNA modification GTPase TrmE [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|166234832|sp|A1JT87.1|MNME_YERE8 RecName: Full=tRNA modification GTPase MnmE
gi|122091308|emb|CAL14194.1| putative thiophene and furan oxidation protein [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|404511954|gb|EKA25812.1| tRNA modification GTPase TrmE [Yersinia enterocolitica subsp.
enterocolitica WA-314]
Length = 454
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 119/335 (35%), Positives = 168/335 (50%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG A ++A K+ KPRYA D V LD+G+ L+FP
Sbjct: 15 GRGGVGILRVSG----RAAATVAQAVLGKLPKPRYADYLPFKD-VDGSTLDQGIALYFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
RS V L G+ VRI ++++ L VEA IDF ++EI + D
Sbjct: 141 ARSAVNSLQGAFS----------VRIHQLVEALTHLRIYVEAAIDFPDEEIDFLSDG--- 187
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+ Q+ + +E+ + + G +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 188 KIEGQLNGVMADLEQ-VRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 246
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 247 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
++ +TI A ++ G+ GV ++RVSG A ++A K+PKPRYA D V
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRVSG----RAAATVAQAVLGKLPKPRYADYLPFKD-VD 55
Query: 84 KVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRN 138
LD+G+ L+FP + G V+ + GP L+ LK + P ++++P S R
Sbjct: 56 GSTLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERA 115
Query: 139 IVD 141
++
Sbjct: 116 FLN 118
>gi|332187013|ref|ZP_08388754.1| small GTP-binding domain protein [Sphingomonas sp. S17]
gi|332013023|gb|EGI55087.1| small GTP-binding domain protein [Sphingomonas sp. S17]
Length = 428
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 115/339 (33%), Positives = 169/339 (49%), Gaps = 71/339 (20%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
++VIRVSGP A + +A ++ KPR A LR + D E LD L L FP P
Sbjct: 15 AAIAVIRVSGPQAFAATERLAG----RLPKPRRAGLRRLRDAAGET-LDSALVLSFPGPA 69
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
+ TGED E HG AV+ A+ GAL PG+R AEPGEF++RA + ++DL + E L D
Sbjct: 70 TATGEDLVELHCHGGRAVVAAVEGALAAQPGVRHAEPGEFTRRALTHGRIDLAEAEGLAD 129
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
L++A+TE QR+ A + V
Sbjct: 130 LLEAQTERQRRAA------------------------------------------IGAVE 147
Query: 281 SQVVQ-LHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEII--EDNILNTV 337
QV Q L G +++ LS A++EA +DF+E++ + + L +
Sbjct: 148 GQVSQALRGWMDRTATLS-----------------AAIEAMLDFAEEDDVPLDAAALAGI 190
Query: 338 RSQVVQLHGSIEKHIELSNKCGV-RIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
R + + G + +E+ ++ V R+ GI+ V+ G PN GKS+L+N L +++ +IV+ I
Sbjct: 191 RGE---MDGLAQAMLEVVDRPPVDRLHDGIRVVLAGPPNSGKSTLLNLLTEREAAIVSPI 247
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRD IE + GG +L DTAGL T D+IE G
Sbjct: 248 AGTTRDRIEASVLRGGIAYVLTDTAGLAEDTDDVIEAIG 286
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ +TIFA+SSG ++VIRVSGP A + +A ++PKPR A LR + D +
Sbjct: 1 MADTIFAVSSGQPPAAIAVIRVSGPQAFAATERLAG----RLPKPRRAGLRRLRDAAGE- 55
Query: 86 VLDEGLCLWFP 96
LD L L FP
Sbjct: 56 TLDSALVLSFP 66
>gi|457095196|gb|EMG25691.1| GTPase and tRNA-U34 5-formylation enzyme [Streptococcus parauberis
KRS-02083]
Length = 488
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 117/337 (34%), Positives = 171/337 (50%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG L+ KS+ D + +I+DP + +LDE + +
Sbjct: 48 GEGAIGIVRLSGSQALDIAKSVFKGKDLASVASHTINYGHILDPDKDEILDEVMVSVMRE 107
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L K G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 108 PKTFTREDVVEINTHGGIAVTNEILQLLIK-HGARMAEPGEFTKRAFLNGRVDLTQAEAV 166
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+LKQL RQ ILNT
Sbjct: 167 MDIIRAKTDKAMNIAVKQLDGSLKQLIDATRQ-----------------------EILNT 203
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ +R
Sbjct: 204 -----------------------------------LAQVEVNIDYPEYDDVEEMTTALMR 228
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + +E + + + G +R G+ + I+G PNVGKSSL+N L +++ +IVT I G
Sbjct: 229 EKTQEFQTLLENLLRTARR-GKILREGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIAG 287
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 288 TTRDVIEEYVNIKGVPLKLVDTAGIR-DTEDIVEKIG 323
>gi|329123024|ref|ZP_08251595.1| tRNA modification GTPase TrmE [Haemophilus aegyptius ATCC 11116]
gi|327471955|gb|EGF17395.1| tRNA modification GTPase TrmE [Haemophilus aegyptius ATCC 11116]
Length = 461
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 114/332 (34%), Positives = 168/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++RVSGP +++ K KPR A D +LD+G+ L+F
Sbjct: 22 GRGGIGILRVSGPLATKVAQAILG----KCPKPRMADYLPFKD-ADGTILDQGIALYFKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L + ++ G+R A PGEFS++AF N+KLDL Q EA+
Sbjct: 77 PNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLDLAQAEAI 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G + +E ++ VEA IDF ++EI D + +
Sbjct: 137 ADLIYATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEEI--DFLADG 194
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+I + ++ +I N L VR
Sbjct: 195 ------------------------KIEANLRGII-------------------NQLEDVR 211
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S+ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 212 SEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR ++
Sbjct: 257 TTRDVLREHIHIDGMPLHIIDTAGLRDAIDEV 288
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP +++ K PKPR A D
Sbjct: 10 MKETIVAQATAPGRGGIGILRVSGPLATKVAQAILG----KCPKPRMADYLPFKD-ADGT 64
Query: 86 VLDEGLCLWF 95
+LD+G+ L+F
Sbjct: 65 ILDQGIALYF 74
>gi|416036079|ref|ZP_11573613.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|347996838|gb|EGY37887.1| tRNA modification GTPase TrmE [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
Length = 451
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 171/335 (51%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEV---VLDEGLCLW 155
G G+ ++RVSGP + +++ K KPR A P E VLD+G+ L+
Sbjct: 13 GCGGIGILRVSGPKAIEVAQAVLG----KCPKPRMADYL----PFKEADGTVLDQGIALY 64
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
F PNSFTGED E Q HG V++ +L + ++ G+R A PGEFS++AF N+KLDL Q
Sbjct: 65 FKGPNSFTGEDVLELQGHGGQVVLDLLLKRILRIEGIRLARPGEFSEQAFLNDKLDLAQA 124
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
EA+ DLI A +E + AL ++G ++ ++ VEA IDF ++EI D +
Sbjct: 125 EAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEEI--DFL 182
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILN 335
+ G IE H+ ++II L+
Sbjct: 183 AD----------GKIEGHL-------------------------------NDIIAQ--LD 199
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
VR++ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 200 KVRAEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNTLAGREAAIVTD 244
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ + G P+ ++DTAGLR T ++
Sbjct: 245 IAGTTRDVLREHIHLDGMPLHIIDTAGLRDATDEV 279
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G G+ ++RVSGP + +++ K PKPR A +
Sbjct: 1 MKETIVAQATAPGCGGIGILRVSGPKAIEVAQAVLG----KCPKPRMADYLPFKE-ADGT 55
Query: 86 VLDEGLCLWF 95
VLD+G+ L+F
Sbjct: 56 VLDQGIALYF 65
>gi|262167093|ref|ZP_06034808.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
RC27]
gi|262024479|gb|EEY43165.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae
RC27]
Length = 453
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 123/344 (35%), Positives = 172/344 (50%), Gaps = 80/344 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVS----KPRYASLRNIVDPVSEVVLDEGLCL 154
G+ GV +IRVSGP +A + Q V+ +PRYA D + LD+G+ L
Sbjct: 14 GRGGVGIIRVSGP--------LAAHVAQTVTGRTLRPRYAEYLPFTDEDGQQ-LDQGIAL 64
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
+FP P+SFTGED E Q HG V++ ++ + ++ G+RPA PGEFS+RAF N+K+DLTQ
Sbjct: 65 FFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDLTQ 124
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
EA+ DLI A +E
Sbjct: 125 AEAIADLIDASSE----------------------------------------------- 137
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEIIEDNI 333
+S + L G K RI + ++S+I L VEA IDF E+EI D +
Sbjct: 138 --QAAKSALQSLQGEFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEI--DFL 183
Query: 334 LNTVRSQVVQLHGSIEKHIELSNKC--GVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
+ S L I+ + + + G +R G+K VI G PN GKSSL+N L K+ +
Sbjct: 184 ADGKVS--ADLQTIIDNLVAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IVT I GTTRDV+ +H+ I G P+ ++DTAGLR SD +E G
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR-DASDAVEKIG 284
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + +++ + +PRYA D + L
Sbjct: 4 DTIVAQATALGRGGVGIIRVSGPLAAHVAQTVTG----RTLRPRYAEYLPFTDEDGQ-QL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALFFPNPHSFTGEDVLELQG 82
>gi|229846059|ref|ZP_04466171.1| tRNA modification GTPase TrmE [Haemophilus influenzae 7P49H1]
gi|229811063|gb|EEP46780.1| tRNA modification GTPase TrmE [Haemophilus influenzae 7P49H1]
Length = 452
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 114/332 (34%), Positives = 168/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++RVSGP +++ K KPR A D +LD+G+ L+F
Sbjct: 13 GRGGIGILRVSGPLATKVAQAILG----KCPKPRMADYLPFKD-ADGTILDQGIALYFKS 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L + ++ G+R A PGEFS++AF N+KLDL Q EA+
Sbjct: 68 PNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLDLAQAEAI 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G + + ++ VEA IDF ++EI D + +
Sbjct: 128 ADLIDATSEQAVRSALKSLQGEFSKKVNALVDSVIYLRTYVEASIDFPDEEI--DFLADG 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+I + ++ +I N L VR
Sbjct: 186 ------------------------KIEANLRGII-------------------NQLEDVR 202
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S+ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 203 SEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 247
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T ++
Sbjct: 248 TTRDVLREHIHIDGMPLHIIDTAGLRDATDEV 279
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP +++ K PKPR A D
Sbjct: 1 MKETIVAQATAPGRGGIGILRVSGPLATKVAQAILG----KCPKPRMADYLPFKD-ADGT 55
Query: 86 VLDEGLCLWF 95
+LD+G+ L+F
Sbjct: 56 ILDQGIALYF 65
>gi|416892113|ref|ZP_11923546.1| tRNA modification GTPase TrmE [Aggregatibacter aphrophilus ATCC
33389]
gi|347814982|gb|EGY31625.1| tRNA modification GTPase TrmE [Aggregatibacter aphrophilus ATCC
33389]
Length = 451
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 116/336 (34%), Positives = 167/336 (49%), Gaps = 73/336 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++RVSGP ++ +++ K KPR A D +LD+G+ L+F
Sbjct: 13 GRGGIGILRVSGPKAIDVAQAVLG----KCPKPRMADYLPFKDE-DGTLLDQGIALYFKS 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L + ++ G+R A PGEFS++AF N+KLDL Q EA+
Sbjct: 68 PNSFTGEDVLELQGHGGQVVLDLLLKRILRIDGIRLARPGEFSEQAFLNDKLDLAQAEAI 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E
Sbjct: 128 ADLIDASSE-------------------------------------------------QA 138
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLAS-VEAYIDFSEDEI---IEDNIL 334
RS + L G E SNK + + SVI L + VEA IDF ++EI + I
Sbjct: 139 ARSALKSLQG------EFSNK----VNQLVDSVIYLRTYVEAAIDFPDEEIDFLADGKIE 188
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
+ + + QL G + K G +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 189 SYLNDIIAQLDG-----VRAEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVT 243
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ + G P+ ++DTAGLR T ++
Sbjct: 244 DIAGTTRDVLREHIHLDGMPLHIIDTAGLREATDEV 279
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP ++ +++ K PKPR A D
Sbjct: 1 MKETIVAQATAPGRGGIGILRVSGPKAIDVAQAVLG----KCPKPRMADYLPFKDE-DGT 55
Query: 86 VLDEGLCLWF 95
+LD+G+ L+F
Sbjct: 56 LLDQGIALYF 65
>gi|386825677|ref|ZP_10112797.1| tRNA modification GTPase TrmE [Serratia plymuthica PRI-2C]
gi|386377419|gb|EIJ18236.1| tRNA modification GTPase TrmE [Serratia plymuthica PRI-2C]
Length = 455
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 119/352 (33%), Positives = 176/352 (50%), Gaps = 75/352 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +A +++ K+ KPRYA D LD+G+ LWFP
Sbjct: 16 GRGGVGILRISGRGAKDAAQALLG----KLPKPRYADYLPFRD-AEGATLDQGIALWFPG 70
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 71 PNSFTGEDVLELQGHGGPVILDLLLKRVLALPGVRIARPGEFSERAFLNDKLDLAQAEAI 130
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 131 ADL-----------------------------------------IDASSEQ--------A 141
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEIIEDNILNTV 337
RS + L G+ RI ++++ L VEA IDF ++EI + L+
Sbjct: 142 ARSAMNSLQGAFS----------TRIHQLVEALTHLRIYVEAAIDFPDEEI---DFLSDG 188
Query: 338 RSQVVQLHGSIEK--HIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+ + QL+G + ++ + G +R G+K VI G PN GKSSL+N L + +IVT
Sbjct: 189 KIEA-QLNGVMADLDNVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTD 247
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI----IETEGNLLEKNNQ 443
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++ IE N +E+ ++
Sbjct: 248 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADR 299
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +A +++ K+PKPRYA D L
Sbjct: 6 DTIVAQATPPGRGGVGILRISGRGAKDAAQALLG----KLPKPRYADYLPFRD-AEGATL 60
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 61 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVLALPGVRIARPGEFSERAFLN 119
>gi|157368276|ref|YP_001476265.1| tRNA modification GTPase TrmE [Serratia proteamaculans 568]
gi|166991115|sp|A8G7P7.1|MNME_SERP5 RecName: Full=tRNA modification GTPase MnmE
gi|157320040|gb|ABV39137.1| tRNA modification GTPase TrmE [Serratia proteamaculans 568]
Length = 454
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 120/352 (34%), Positives = 174/352 (49%), Gaps = 75/352 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG K +A K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISG----RGAKDVAQALLGKLPKPRYADYLPFRDAAG-ATLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRVLALPGMRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEIIEDNILNTV 337
RS + L G+ RI ++++ L VEA IDF ++EI + L+
Sbjct: 141 ARSAMNSLQGAFS----------TRIHQLVEALTHLRIYVEAAIDFPDEEI---DFLSDG 187
Query: 338 RSQVVQLHGSIEK--HIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+ + QL+G + + + G +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 188 KIEA-QLNGVMADLDSVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 246
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI----IETEGNLLEKNNQ 443
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++ IE N +E+ ++
Sbjct: 247 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADR 298
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
++ +TI A ++ G+ GV ++R+SG K +A K+PKPRYA D +
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRISG----RGAKDVAQALLGKLPKPRYADYLPFRD-AA 55
Query: 84 KVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRN 138
LD+G+ LWFP + G V+ + GP L+ LK + P ++++P S R
Sbjct: 56 GATLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVLALPGMRIARPGEFSERA 115
Query: 139 IVD 141
++
Sbjct: 116 FLN 118
>gi|262371178|ref|ZP_06064499.1| tRNA modification GTPase mnmE [Acinetobacter johnsonii SH046]
gi|262313908|gb|EEY94954.1| tRNA modification GTPase mnmE [Acinetobacter johnsonii SH046]
Length = 454
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 170/340 (50%), Gaps = 72/340 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV VIR+SGP + +++ + + K R+A R D EV +DEGL + FP
Sbjct: 18 GRGGVGVIRLSGPKSYEIAQALT---QKDLPKARFAGFRQFYDASGEV-MDEGLAICFPN 73
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG + NA+LG L +L G A+ GEFS RAF N KLDL Q EA+
Sbjct: 74 PNSFTGEDVVELQGHGGPVIQNALLGRLLEL-GAIAAKAGEFSMRAFENGKLDLVQAEAI 132
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A ++ + A+ +L+ +S +LE L +
Sbjct: 133 ADLIDATSQAAARSAVR----SLQGAFSTKVNHVLEQLIHL------------------- 169
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI---IEDNILN 335
+LH VEA IDF E+EI ++ ILN
Sbjct: 170 ------RLH-----------------------------VEAAIDFPEEEIDFLVDGKILN 194
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+ ++ ++ S + G +R G++ VI G+PN GKSSL+N L + +IVT
Sbjct: 195 LLDGVTAAVN-----QVQQSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGIERAIVTD 249
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I GTTRDV+ + + + G P+ L DTAGLR T DI+E EG
Sbjct: 250 IAGTTRDVLHEKITLNGLPITLTDTAGLR-ETGDIVEKEG 288
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 24/139 (17%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
+ TI A+++ G+ GV VIR+SGP + +++ + +PK R+A R D S V
Sbjct: 7 RTTIAAIATPPGRGGVGVIRLSGPKSYEIAQALT---QKDLPKARFAGFRQFYD-ASGEV 62
Query: 87 LDEGLCLWFPR-HGKCGVSVIRV---SGPDTLNALK----------------SMACYPDQ 126
+DEGL + FP + G V+ + GP NAL SM + +
Sbjct: 63 MDEGLAICFPNPNSFTGEDVVELQGHGGPVIQNALLGRLLELGAIAAKAGEFSMRAFENG 122
Query: 127 KVSKPRYASLRNIVDPVSE 145
K+ + ++ +++D S+
Sbjct: 123 KLDLVQAEAIADLIDATSQ 141
>gi|414071437|ref|ZP_11407406.1| tRNA modification GTPase MnmE [Pseudoalteromonas sp. Bsw20308]
gi|410806157|gb|EKS12154.1| tRNA modification GTPase MnmE [Pseudoalteromonas sp. Bsw20308]
Length = 454
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 118/334 (35%), Positives = 166/334 (49%), Gaps = 77/334 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSG + KS+A K+ K RYA E LD+G+ ++F
Sbjct: 15 GRGGVGIIRVSG----SLAKSVAEKVVGKIPKVRYADYVPFKSLAGEQ-LDQGIAIYFAG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L ++K+ G+R A+PGEFS+RAF N+KLDLTQ EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVVLDMLLKEISKIEGVRLAKPGEFSERAFMNDKLDLTQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G + + ++ VEA IDF ++EI
Sbjct: 130 ADLINATSEQAAKSALQSLQGEFSKHIETLVEKVIHLRMYVEAAIDFPDEEI-------- 181
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNI----- 333
DF D + ++
Sbjct: 182 -------------------------------------------DFLSDGKVSGDLDAIIT 198
Query: 334 -LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
LNTV +Q Q GSI +R G++ VI G PN GKSSL+N L ++ +I
Sbjct: 199 QLNTVTNQAKQ--GSI-------------MREGMRVVIAGRPNAGKSSLLNALAGREAAI 243
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426
VT I GTTRDV+ +H+ I G P+ ++DTAGLR +
Sbjct: 244 VTEIAGTTRDVLREHIHIDGMPLHIIDTAGLRES 277
>gi|328859150|gb|EGG08260.1| hypothetical protein MELLADRAFT_34988 [Melampsora larici-populina
98AG31]
Length = 350
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 122/355 (34%), Positives = 175/355 (49%), Gaps = 78/355 (21%)
Query: 96 PRHGKCGVSVIRVSGPD----------TLNALKSMACYPDQKVSKPRYASLRNIVDPVSE 145
P + K +S+IRV GP T++ K Q PR A LR IVDP ++
Sbjct: 47 PTNSKSALSIIRVDGPQAAGLYHQMTSTISPKKHSNAPLHQSKLPPRTAKLRRIVDPSTK 106
Query: 146 VVLD-EGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRA 204
LD E + + FP ++ T EF +HGS A+ +++ +L++L R A+PGEF++R
Sbjct: 107 ETLDPEAIVINFPHQSTSTTS-TFEFHLHGSPAITKSVILSLSRLSNFRLAQPGEFTQRR 165
Query: 205 FFNN------KLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLAS 258
+ + + DL Q AL +LI AET+ QR+ A+HQ G KQ+Y R+ +LES+A
Sbjct: 166 YERSMIRDQPEFDLNQLLALKNLIDAETDEQRKLAIHQFDGPFKQVYQSMRKTLLESMAL 225
Query: 259 VEAYIDFSEDEIIED-NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASV 317
EA IDFSED I+D ++ V +V L I H+ SN+
Sbjct: 226 CEAIIDFSEDGSIDDESVWKQVSHKVQSLRSIIRSHLNDSNR------------------ 267
Query: 318 EAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVG 377
+ +LN G+R+ + G PNVG
Sbjct: 268 ------------HEKVLN-----------------------GIRL------TLFGAPNVG 286
Query: 378 KSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIE 432
KS+L+N+L ++ SIV+ PGTTRDVIE LD G+P+I+ DTAGLR T I E
Sbjct: 287 KSTLLNWLVNREASIVSPHPGTTRDVIEISLDFHGFPIIVSDTAGLRDTQDPIEE 341
>gi|163851007|ref|YP_001639050.1| tRNA modification GTPase TrmE [Methylobacterium extorquens PA1]
gi|163662612|gb|ABY29979.1| tRNA modification GTPase TrmE [Methylobacterium extorquens PA1]
Length = 444
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 117/352 (33%), Positives = 168/352 (47%), Gaps = 76/352 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ V+V+R+SGP L +A +PR SLR + DP S +LD+ L W P
Sbjct: 20 GRAAVTVVRISGPAAGLTLDRLA----GGRPEPRRLSLRCLRDPESRDILDQALVAWLPG 75
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P + TGED E +HG +AV +A+L AL ++PG RPAE G FS+RAF N +
Sbjct: 76 PATATGEDMAELHLHGGLAVRSAVLRALGRVPGCRPAEAGAFSRRAFLNGR--------- 126
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
ID +E E I D I
Sbjct: 127 --------------------------------------------IDLTEAEGIADLIDAE 142
Query: 279 VRSQVVQ----LHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
+Q VQ + G++ + + + G+ + LA EA +DF+++ +++ L
Sbjct: 143 TEAQRVQALRQIDGALGRQVAAWRETGIDL---------LAGAEAALDFADEGDVDEAGL 193
Query: 335 NTVRS-QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIV 393
+ S + L +I + + G R+R G V+ G PN GKS+L+N L + +IV
Sbjct: 194 DAALSGRAAFLRDAIRAALA-DGRRGERLREGFCVVLAGAPNAGKSTLLNALTGRDAAIV 252
Query: 394 TSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKNNQQR 445
+ IPGTTRD IE D+GG PV+L+DTAGLR T+D IE EG K Q R
Sbjct: 253 SDIPGTTRDAIEVRCDLGGLPVVLVDTAGLR-DTADAIEAEGV---KRTQSR 300
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 136/289 (47%), Gaps = 67/289 (23%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFA +SG G+ V+V+R+SGP L +A P+PR SLR + DP S+ +L
Sbjct: 10 DTIFAPASGFGRAAVTVVRISGPAAGLTLDRLA----GGRPEPRRLSLRCLRDPESRDIL 65
Query: 88 DEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVV 147
D+ L W P GP T + ++E+
Sbjct: 66 DQALVAWLP-------------GPATATG------------------------EDMAELH 88
Query: 148 LDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFN 207
L GL V +A+L AL ++PG RPAE G FS+RAF N
Sbjct: 89 LHGGLA------------------------VRSAVLRALGRVPGCRPAEAGAFSRRAFLN 124
Query: 208 NKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSE 267
++DLT+ E + DLI AETE QR +AL Q+ G L + + WR+ ++ LA EA +DF++
Sbjct: 125 GRIDLTEAEGIADLIDAETEAQRVQALRQIDGALGRQVAAWRETGIDLLAGAEAALDFAD 184
Query: 268 DEIIEDNILNTVRS-QVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA 315
+ +++ L+ S + L +I + + G R+R G V+ A
Sbjct: 185 EGDVDEAGLDAALSGRAAFLRDAIRAALA-DGRRGERLREGFCVVLAGA 232
>gi|261213270|ref|ZP_05927552.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. RC341]
gi|260837544|gb|EEX64247.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. RC341]
Length = 453
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 173/344 (50%), Gaps = 80/344 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVS----KPRYASLRNIVDPVSEVVLDEGLCL 154
G+ GV +IRVSGP +A + Q V+ +PRYA D + LD+G+ L
Sbjct: 14 GRGGVGIIRVSGP--------LAAHVAQTVTGRMLRPRYAEYLPFTDENGQQ-LDQGIAL 64
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
+FP P+SFTGED E Q HG V++ ++ + ++ G+RPA PGEFS+RAF N+K+DLTQ
Sbjct: 65 FFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQINGVRPARPGEFSERAFLNDKMDLTQ 124
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
EA+ DLI A +E
Sbjct: 125 AEAIADLIDASSE----------------------------------------------- 137
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IED 331
+S + L G K RI + + S+I L VEA IDF E+EI + D
Sbjct: 138 --QAAKSALQSLQGEFSK----------RIHTLVGSLIHLRIYVEAAIDFPEEEIDFLAD 185
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
++ ++ ++ + +N+ G +R G+K VI G PN GKSSL+N L K+ +
Sbjct: 186 GKVSADLQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IVT I GTTRDV+ +H+ I G P+ ++DTAGLR SD +E G
Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR-DASDAVEKIG 284
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + +++ ++ +PRYA D + L
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTG----RMLRPRYAEYLPFTDENGQ-QL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALFFPNPHSFTGEDVLELQG 82
>gi|148285155|ref|YP_001249245.1| tRNA modification GTPase TrmE [Orientia tsutsugamushi str. Boryong]
gi|205415786|sp|A5CFM7.1|MNME_ORITB RecName: Full=tRNA modification GTPase MnmE
gi|146740594|emb|CAM81244.1| tRNA modification GTPase TrmE [Orientia tsutsugamushi str. Boryong]
Length = 447
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 122/337 (36%), Positives = 170/337 (50%), Gaps = 64/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SG +L ++ + C V PR R I + V+D+ L ++F
Sbjct: 14 GKAGVAVFRISGSLSLLIVERL-CGKFNIV--PRKVYYRTIRCYATSQVIDKALIVYFKG 70
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
SFTGED E HGS+AV + ++ + G+R AEPGEF+KRAF N K+DLT E L
Sbjct: 71 EQSFTGEDVVEIHTHGSVAVAKMLTRSILECDGIRLAEPGEFAKRAFLNGKMDLTMAEGL 130
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL IE L
Sbjct: 131 VDL-------------------------------------------------IESETLMQ 141
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+ + Q+ G +EK S+ G+ I+ L+ +E YIDF ++EI + ++L +
Sbjct: 142 HKQAIRQMEGELEKL--YSHWRGMLIK-------ILSFIEGYIDFPDEEIPQ-SVLREAK 191
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S + L I H+ + K G +R GI I GE N GKSSL+N+L ++ +IV+ IPG
Sbjct: 192 SIINNLTREISNHLGDTRK-GEVLRHGIVLAITGETNTGKSSLLNYLTMREAAIVSDIPG 250
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE HLDIGGYP+I+ DTAG+R + D IE EG
Sbjct: 251 TTRDVIEAHLDIGGYPIIVRDTAGIR-ESDDPIEQEG 286
>gi|374850916|dbj|BAL53892.1| tRNA modification GTPase TrmE [uncultured Acidobacteria bacterium]
gi|374851668|dbj|BAL54621.1| tRNA modification GTPase TrmE [uncultured Acidobacteria bacterium]
Length = 465
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 116/353 (32%), Positives = 177/353 (50%), Gaps = 75/353 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALK-----SMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLC 153
G+ G+ ++R+SGP + + P + + PR A+ I DP + +LDE +
Sbjct: 17 GRGGIGIVRLSGPRAREIARIVFHPKVEGAPHEVLFSPRRATFGEIRDPQTRDLLDEAIA 76
Query: 154 LWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLT 213
+FP P+S+TGED EF HGS V+ +L AL + G R A PGEF+ RAF N ++DLT
Sbjct: 77 TFFPGPHSYTGEDVVEFSCHGSPVVLRRVLDALLEC-GARAAGPGEFTLRAFLNGRIDLT 135
Query: 214 QTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIED 273
Q EA+ DLI+A+T Q + AL Q++GNL + RQ +++ + +E ++F ED+++ +
Sbjct: 136 QAEAIRDLIEAQTVTQARVALRQLQGNLSRRLQPLRQTLVDVIVQMETAVEFVEDDVVTE 195
Query: 274 ---NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIE 330
++L + + + QL I H + G +R GI
Sbjct: 196 SRASLLRRLDAVIAQLE-EIASH----YRTGRLVREGI---------------------- 228
Query: 331 DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQI 390
HI + K PNVGKSSL N L +++
Sbjct: 229 --------------------HIAIVGK----------------PNVGKSSLFNRLLERER 252
Query: 391 SIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKNNQ 443
+IVT IPGTTRD++ + I G P+ L+DTAGLR T D +E G +E++ Q
Sbjct: 253 AIVTEIPGTTRDMLIEMASIEGIPIHLVDTAGLREAT-DRVERLG--IERSRQ 302
>gi|258626075|ref|ZP_05720926.1| tRNA modification GTPase [Vibrio mimicus VM603]
gi|258581601|gb|EEW06499.1| tRNA modification GTPase [Vibrio mimicus VM603]
Length = 464
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 118/340 (34%), Positives = 172/340 (50%), Gaps = 72/340 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP +++ + +PRYA D + LD+G+ L+FP
Sbjct: 25 GRGGVGIIRVSGPLAAQVAQTVTG----RTLRPRYAEYLPFTDENGQQ-LDQGIALFFPN 79
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ ++ + ++ G+RPA PGEFS+RAF N+K+DLTQ EA+
Sbjct: 80 PHSFTGEDVLELQGHGGPVVMDMLIRRILQINGVRPARPGEFSERAFLNDKMDLTQAEAI 139
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E
Sbjct: 140 ADLIDASSE-------------------------------------------------QA 150
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
+S + L G K RI + ++S+I L VEA IDF E+EI + D ++
Sbjct: 151 AKSALQSLQGEFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLADGKVS 200
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
++ ++ + +N+ G +R G+K VI G PN GKSSL+N L K+ +IVT
Sbjct: 201 ADLQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTD 256
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I GTTRDV+ +H+ I G P+ ++DTAGLR SD +E G
Sbjct: 257 IAGTTRDVLREHIHIDGMPLHIIDTAGLR-DASDAVEKIG 295
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP +++ + +PRYA D + L
Sbjct: 15 DTIVAQATAPGRGGVGIIRVSGPLAAQVAQTVTG----RTLRPRYAEYLPFTDENGQ-QL 69
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 70 DQGIALFFPNPHSFTGEDVLELQG 93
>gi|456371113|gb|EMF50009.1| GTPase and tRNA-U34 5-formylation enzyme [Streptococcus parauberis
KRS-02109]
Length = 488
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 171/337 (50%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG L+ KS+ D + +I+DP + +LDE + +
Sbjct: 48 GEGAIGIVRLSGSQALDIAKSVFKGKDLASVASHTINYGHILDPDKDEILDEVMVSVMRE 107
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L K G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 108 PKTFTREDVVEINTHGGIAVTNEILQLLIK-HGARMAEPGEFTKRAFLNGRVDLTQAEAV 166
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+LKQL RQ ILNT
Sbjct: 167 MDIIRAKTDKAMNIAVKQLDGSLKQLIDATRQ-----------------------EILNT 203
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ +R
Sbjct: 204 -----------------------------------LAQVEVNIDYPEYDDVEEMTTALMR 228
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + +E + + + G +R G+ + I+G PNVGKSSL+N L +++ +IVT I G
Sbjct: 229 EKTQEFQTLLENLLRTARR-GKILREGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIAG 287
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 288 TTRDVIEEYVNIKGVPLKLVDTAGIR-DTEDVVEKIG 323
>gi|359442202|ref|ZP_09232076.1| tRNA modification GTPase MnmE [Pseudoalteromonas sp. BSi20429]
gi|392535926|ref|ZP_10283063.1| tRNA modification GTPase TrmE [Pseudoalteromonas arctica A 37-1-2]
gi|358035985|dbj|GAA68325.1| tRNA modification GTPase MnmE [Pseudoalteromonas sp. BSi20429]
Length = 454
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 118/334 (35%), Positives = 166/334 (49%), Gaps = 77/334 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSG + KS+A K+ K RYA E LD+G+ ++F
Sbjct: 15 GRGGVGIIRVSG----SLAKSVAEKVVGKIPKVRYADYVPFKSLAGEQ-LDQGIAIYFAG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L ++K+ G+R A+PGEFS+RAF N+KLDLTQ EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVVLDMLLKEISKIEGVRLAKPGEFSERAFMNDKLDLTQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G + + ++ VEA IDF ++EI
Sbjct: 130 ADLINATSEQAAKSALQSLQGEFSKHIETLVEKVIHLRMYVEAAIDFPDEEI-------- 181
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNI----- 333
DF D + ++
Sbjct: 182 -------------------------------------------DFLSDGKVSGDLDAIIT 198
Query: 334 -LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
LNTV +Q Q GSI +R G++ VI G PN GKSSL+N L ++ +I
Sbjct: 199 QLNTVTNQAKQ--GSI-------------MREGMRVVIAGRPNAGKSSLLNALAGREAAI 243
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426
VT I GTTRDV+ +H+ I G P+ ++DTAGLR +
Sbjct: 244 VTEIAGTTRDVLREHIHIDGMPLHIIDTAGLRES 277
>gi|229593496|ref|YP_002875615.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens SBW25]
gi|229365362|emb|CAY53749.1| probable tRNA modification GTPase [Pseudomonas fluorescens SBW25]
Length = 456
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 118/334 (35%), Positives = 162/334 (48%), Gaps = 68/334 (20%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYP-DQKVSKPRYASLRNIVDPVSEVVLDEGLCLWF 156
G+ GV ++R+SGP L S+A + KPRYA +D + VLDEGL L+F
Sbjct: 15 QGRGGVGIVRISGP-----LASVAANAISGRELKPRYAHYGPFLD-ADQSVLDEGLALYF 68
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P PNSFTGED E Q HG V++ +L +L G R A PGEFS++AF N+KLDL Q E
Sbjct: 69 PGPNSFTGEDVLELQGHGGPVVLDMLLQRCLQL-GCRLARPGEFSEQAFLNDKLDLAQAE 127
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ DLI+A + + AL ++G + ++ VEA IDF E+EI
Sbjct: 128 AIADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLISLRIYVEAAIDFPEEEI------ 181
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
+ V A +D DE L+T
Sbjct: 182 ---------------------------------DFLADGHVLAMLDKVRDE------LST 202
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
V + Q G +R G+ VI G PN GKSSL+N L ++ +IVT I
Sbjct: 203 VLREAGQ---------------GALLRDGMTVVIAGRPNAGKSSLLNALAGREAAIVTEI 247
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRD++ +H+ I G P+ ++DTAGLR T +
Sbjct: 248 AGTTRDILREHIHIDGMPLHVVDTAGLRDTDDQV 281
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 7/73 (9%)
Query: 25 AIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYP-DQKVPKPRYASLRNIVDPVS 83
A + TI A+++ G+ GV ++R+SGP L S+A + KPRYA +D
Sbjct: 3 APRETIAAVATAQGRGGVGIVRISGP-----LASVAANAISGRELKPRYAHYGPFLD-AD 56
Query: 84 KVVLDEGLCLWFP 96
+ VLDEGL L+FP
Sbjct: 57 QSVLDEGLALYFP 69
>gi|195978293|ref|YP_002123537.1| tRNA modification GTPase TrmE [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|195974998|gb|ACG62524.1| tRNA modification GTPase TrmE [Streptococcus equi subsp.
zooepidemicus MGCS10565]
Length = 458
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 117/337 (34%), Positives = 170/337 (50%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG L+ KS+ D + +I+ P + V+DE +
Sbjct: 18 GEGAIGIVRLSGTKALDIAKSIFKGKDLTTVASHTLNYGHIIKPSTGEVIDEVMVSVMLA 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L K G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 78 PKTFTREDVIEINTHGGIAVTNDILQLLIK-QGARMAEPGEFTKRAFLNGRIDLTQAEAV 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI+A+T+ A+ Q+ G+L QL S+ RQ ILNT
Sbjct: 137 MDLIRAKTDKAMSIAIKQLDGSLSQLISDTRQ-----------------------EILNT 173
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ +R
Sbjct: 174 -----------------------------------LAQVEVNIDYPEYDDVEEMTTALLR 198
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + +E+ + + K G +R G+ + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 199 DKTQEFQALLEQLLR-TAKRGKILREGLSTAIIGRPNVGKSSLLNTLLREDKAIVTDIAG 257
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 258 TTRDVIEEYVNIKGIPLKLVDTAGIR-ETDDLVEQIG 293
>gi|399065165|ref|ZP_10747787.1| small GTP-binding protein [Novosphingobium sp. AP12]
gi|398029984|gb|EJL23425.1| small GTP-binding protein [Novosphingobium sp. AP12]
Length = 424
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 114/336 (33%), Positives = 164/336 (48%), Gaps = 69/336 (20%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVS-EVVLDEGLCLWFPKP 159
++V+R+SGP AL+++ P+ PR AS R + VS E VLD L LWFP P
Sbjct: 15 AAIAVVRLSGPQAGAALEALCGLPE-----PRRASYRTLR--VSRETVLDRALVLWFPGP 67
Query: 160 NSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALG 219
+ TGED E +HG AV+ A AL LPGLR A PGEF++RAF N ++DL + E L
Sbjct: 68 RTATGEDLVELHLHGGRAVVAATERALGDLPGLRRATPGEFTRRAFANGRIDLAEAEGLA 127
Query: 220 DLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTV 279
DL+ AETELQR
Sbjct: 128 DLLSAETELQR------------------------------------------------- 138
Query: 280 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRS 339
RS + G +E + ++++ A+VEA +DFS+++ + D L +
Sbjct: 139 RSAIAMAGGVFSAQVEDWRE---------RALVASAAVEAVLDFSDEDDVSD--LPPDFA 187
Query: 340 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGT 399
+ +++ G+ E LS +R G + V+ G PN GKS+L N L + + +I + GT
Sbjct: 188 ERLRVLGA-ELSDWLSRPRAETLREGYRVVLAGPPNAGKSTLFNALVEDEAAITAPLAGT 246
Query: 400 TRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TRDV+ + + I G P + DTAGLR T+D IE G
Sbjct: 247 TRDVLTRAVAIEGVPFVFADTAGLRDETTDAIEAIG 282
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 119/249 (47%), Gaps = 69/249 (27%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSK- 84
+ +TIFALSSG ++V+R+SGP AL+++ C +P+PR AS R + VS+
Sbjct: 1 MNDTIFALSSGSPPAAIAVVRLSGPQAGAALEAL-C----GLPEPRRASYRTLR--VSRE 53
Query: 85 VVLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVS 144
VLD L LWFP PR A+ ++V
Sbjct: 54 TVLDRALVLWFP---------------------------------GPRTATGEDLV---- 76
Query: 145 EVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRA 204
E +HG AV+ A AL LPGLR A PGEF++RA
Sbjct: 77 ------------------------ELHLHGGRAVVAATERALGDLPGLRRATPGEFTRRA 112
Query: 205 FFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYID 264
F N ++DL + E L DL+ AETELQR+ A+ G +WR+ L + A+VEA +D
Sbjct: 113 FANGRIDLAEAEGLADLLSAETELQRRSAIAMAGGVFSAQVEDWRERALVASAAVEAVLD 172
Query: 265 FSEDEIIED 273
FS+++ + D
Sbjct: 173 FSDEDDVSD 181
>gi|396458660|ref|XP_003833943.1| hypothetical protein LEMA_P067040.1 [Leptosphaeria maculans JN3]
gi|312210491|emb|CBX90578.1| hypothetical protein LEMA_P067040.1 [Leptosphaeria maculans JN3]
Length = 723
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 115/347 (33%), Positives = 172/347 (49%), Gaps = 82/347 (23%)
Query: 99 GKCGVSVIRVSGP---DTLNALKSMACYPDQKVSKPRYASLRNI----VDPVSEVVLDEG 151
G+ ++VIR+SG +AL A +P KPR A+LR + + P +LD G
Sbjct: 89 GRAAIAVIRISGSACRQIYHALCPSAAFP-----KPRQATLRKLYTPNISPSPATLLDSG 143
Query: 152 -LCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGAL-------------TKLPGLRPAEP 197
L L+FP P++ TGED E VHG A++ A+L A+ T +R AEP
Sbjct: 144 ALVLYFPAPSTVTGEDLLELHVHGGPAIVRAVLAAIPACTKVADAVSGGTAAAQIRYAEP 203
Query: 198 GEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLA 257
GEF++RAF NN++DL Q E+LG+ + A TE QR+ ++ +L Y +WR L+L +
Sbjct: 204 GEFTRRAFANNRMDLPQIESLGETLSATTEEQRKLSVRGTTSSLAARYEQWRMLLLAARG 263
Query: 258 SVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASV 317
+EA IDFSED+ +++ S Q+H S+ H+E
Sbjct: 264 ELEALIDFSEDQHFDESPAVLCASVAKQVH-SLRIHMEA--------------------- 301
Query: 318 EAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVG 377
++ N VR ++ +R+GI ++G PN G
Sbjct: 302 --------------HVANAVRGEL--------------------LRNGISVALLGAPNAG 327
Query: 378 KSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424
KSSL+N + + +IV+ GTTRDV+E LD+GG+ V + D AGLR
Sbjct: 328 KSSLLNRIVGRDAAIVSHEAGTTRDVVEVGLDLGGWLVKMGDMAGLR 374
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNI----VDPVSK 84
TI+ALS+ G+ ++VIR+SG ++ P PKPR A+LR + + P
Sbjct: 80 TIYALSTAPGRAAIAVIRISGSACRQIYHALC--PSAAFPKPRQATLRKLYTPNISPSPA 137
Query: 85 VVLDEG-LCLWFP 96
+LD G L L+FP
Sbjct: 138 TLLDSGALVLYFP 150
>gi|332533705|ref|ZP_08409564.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudoalteromonas
haloplanktis ANT/505]
gi|332036869|gb|EGI73330.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudoalteromonas
haloplanktis ANT/505]
Length = 454
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 118/334 (35%), Positives = 166/334 (49%), Gaps = 77/334 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSG + KS+A K+ K RYA E LD+G+ ++F
Sbjct: 15 GRGGVGIIRVSG----SLAKSVAEKVVGKIPKVRYADYVPFKSLAGEQ-LDQGIAIYFAG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L ++K+ G+R A+PGEFS+RAF N+KLDLTQ EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVVLDMLLKEISKIEGVRLAKPGEFSERAFMNDKLDLTQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G + + ++ VEA IDF ++EI
Sbjct: 130 ADLINATSEQAAKSALQSLQGEFSKHIETLVEKVIHLRMYVEAAIDFPDEEI-------- 181
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNI----- 333
DF D + ++
Sbjct: 182 -------------------------------------------DFLSDGKVSGDLDTIIT 198
Query: 334 -LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
LNTV +Q Q GSI +R G++ VI G PN GKSSL+N L ++ +I
Sbjct: 199 QLNTVTNQAKQ--GSI-------------MREGMRVVIAGRPNAGKSSLLNALAGREAAI 243
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426
VT I GTTRDV+ +H+ I G P+ ++DTAGLR +
Sbjct: 244 VTEIAGTTRDVLREHIHIDGMPLHIIDTAGLRES 277
>gi|189184774|ref|YP_001938559.1| tRNA modification GTPase TrmE [Orientia tsutsugamushi str. Ikeda]
gi|189181545|dbj|BAG41325.1| tRNA modification GTP-binding protein ThdF (TrmE) [Orientia
tsutsugamushi str. Ikeda]
Length = 447
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 123/337 (36%), Positives = 171/337 (50%), Gaps = 64/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SG +L ++ + C V PR R I ++ V+D+ L ++F
Sbjct: 14 GKAGVAVFRISGGLSLLIVERL-CGKFNIV--PRKVYYRTIRCYITSQVIDKALIVYFQG 70
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
SFTGED E HGS+AV + ++ + G+R AEPGEF+KRAF N K+DLT E L
Sbjct: 71 EYSFTGEDVVEIHTHGSVAVAKMLTRSILECDGVRLAEPGEFAKRAFLNGKMDLTMAEGL 130
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL IE L
Sbjct: 131 VDL-------------------------------------------------IESETLMQ 141
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+ + Q+ G +EK S+ G+ I+ L+ VE YIDF ++EI + ++L +
Sbjct: 142 HKQAIRQMGGELEKL--YSHWRGMLIK-------ILSFVEGYIDFPDEEIPQ-SVLREAK 191
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S + L I H+ + K G +R GI I GE N GKSSL+N+L ++ +IV+ IPG
Sbjct: 192 SIINNLTQEISNHLGDARK-GEVLRHGIVLAITGETNTGKSSLLNYLTMREAAIVSDIPG 250
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE HLDIGGYP+I+ DTAG+R + D IE EG
Sbjct: 251 TTRDVIEAHLDIGGYPIIVRDTAGIR-ESDDPIEQEG 286
>gi|152988592|ref|YP_001351679.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa PA7]
gi|452877534|ref|ZP_21954812.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa VRFPA01]
gi|166234809|sp|A6VF44.1|MNME_PSEA7 RecName: Full=tRNA modification GTPase MnmE
gi|150963750|gb|ABR85775.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa PA7]
gi|452185755|gb|EME12773.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa VRFPA01]
Length = 455
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 166/332 (50%), Gaps = 66/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSGP +A + KPR+A +D +V+ DEGL L+FP
Sbjct: 16 GRGGVGIVRVSGP----LAGRIAVEVSGRELKPRHAHYGPFLDGGGQVI-DEGLSLYFPG 70
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ ++ +L G R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 71 PNSFTGEDVLELQGHGGPVVLDLLVQRCLEL-GARQARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI+A +E + AL ++G + + ++ VEA IDF E+EI D + +
Sbjct: 130 ADLIEASSEQAARNALRSLQGEFSRRVHALTEQLISLRIYVEAAIDFPEEEI--DFLADG 187
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+ G +EK VR L+TVR
Sbjct: 188 ------HVLGLLEK---------VRTE----------------------------LSTVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ Q G +R G+ VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 REASQ---------------GALLRDGMTVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T +
Sbjct: 250 TTRDVLREHIHIDGMPLHVVDTAGLRDTEDHV 281
>gi|56698706|ref|YP_169083.1| tRNA modification GTPase TrmE [Ruegeria pomeroyi DSS-3]
gi|81819880|sp|Q5LLM7.1|MNME_SILPO RecName: Full=tRNA modification GTPase MnmE
gi|56680443|gb|AAV97109.1| tRNA modification GTPase TrmE [Ruegeria pomeroyi DSS-3]
Length = 428
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 120/345 (34%), Positives = 168/345 (48%), Gaps = 66/345 (19%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
GK GV+VIR+SGP + AC R S+R + D LD+G+ L F
Sbjct: 11 QGKAGVAVIRLSGPRAYH----TACLLAGPDLPSRGLSVRQLKDSQG-ARLDDGVVLTFA 65
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGED EFQ+HGS+A A+L L L GLR AEPGEF++RA N K+ L Q E
Sbjct: 66 APASFTGEDVAEFQIHGSLATTEAVLRCLGDLDGLRLAEPGEFTRRALENGKMSLPQVEG 125
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI + E + Q+ Q +LN
Sbjct: 126 LADLI--DAETEAQRKQAQA-------------------------------------VLN 146
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
Q+ + G R K + A +EA IDF+++E+ D + V
Sbjct: 147 GALGQLAE---------------GWRA----KLIRAAALLEAVIDFADEEVPTD-VSPEV 186
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
R+ + ++ +E I + RIR+G + I+G PN GKS+L+N L ++ ++ + +
Sbjct: 187 RALLAEVRADLEHEIA-GVRIAERIRTGFEVAIIGPPNAGKSTLLNMLAGREAALTSEVA 245
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKNN 442
GTTRDVIE +D+GG PV LLDTAGLR T D++E G L +
Sbjct: 246 GTTRDVIEVRMDLGGLPVTLLDTAGLR-ETGDLVEGMGIALARRR 289
>gi|358012764|ref|ZP_09144574.1| tRNA modification GTPase TrmE [Acinetobacter sp. P8-3-8]
Length = 454
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 123/343 (35%), Positives = 166/343 (48%), Gaps = 78/343 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV VIR+SGP A + + K R+A R D EV +DEGL + FP
Sbjct: 18 GRGGVGVIRLSGP---KAYAIAEALTQKALPKARFAGFRQFFDEKGEV-MDEGLAICFPN 73
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG + NA+L L +L G A+ GEFS RAF N K+DL Q EA+
Sbjct: 74 PNSFTGEDVVELQGHGGPVIQNALLARLLEL-GATAAKAGEFSMRAFENGKMDLVQAEAI 132
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A ++ + A+ ++G N +NT
Sbjct: 133 ADLIDATSQAAARSAVRSLQGAFS-------------------------------NKVNT 161
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI--IED----N 332
V +++ H+ L VEA IDF E+EI + D
Sbjct: 162 VLEKLI--------HLRLH-------------------VEAAIDFPEEEIDFLADGKILT 194
Query: 333 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
+L V+S V ++ S + G +R G++ VI G+PN GKSSL+N L +I
Sbjct: 195 LLQDVQSSV--------SAVQQSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGNDRAI 246
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
VT I GTTRDV+ + + + G P+ L DTAGLR T DI+E EG
Sbjct: 247 VTDIAGTTRDVLHEKITLNGLPITLTDTAGLR-ETGDIVEKEG 288
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 24/141 (17%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
+ TI A+++ G+ GV VIR+SGP A + +PK R+A R D + V
Sbjct: 7 QTTIAAIATPPGRGGVGVIRLSGP---KAYAIAEALTQKALPKARFAGFRQFFDEKGE-V 62
Query: 87 LDEGLCLWFPR-HGKCGVSVIRV---SGPDTLNALK----------------SMACYPDQ 126
+DEGL + FP + G V+ + GP NAL SM + +
Sbjct: 63 MDEGLAICFPNPNSFTGEDVVELQGHGGPVIQNALLARLLELGATAAKAGEFSMRAFENG 122
Query: 127 KVSKPRYASLRNIVDPVSEVV 147
K+ + ++ +++D S+
Sbjct: 123 KMDLVQAEAIADLIDATSQAA 143
>gi|212712606|ref|ZP_03320734.1| hypothetical protein PROVALCAL_03701 [Providencia alcalifaciens DSM
30120]
gi|212684822|gb|EEB44350.1| hypothetical protein PROVALCAL_03701 [Providencia alcalifaciens DSM
30120]
Length = 454
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 115/332 (34%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSGP +++ K+ KPRYA D VLD+G+ ++FP
Sbjct: 15 GRGGVGILRVSGPQAALVAETVLG----KLPKPRYADYLPFRD-ADGSVLDQGIAIYFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + + +R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLRRILTIANIRIANPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + A++ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSAMNSLQGAFSSHIHQLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E++ D L+ VR
Sbjct: 186 --------DGKIEAKL-------------------------------NEVVAD--LDQVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
SQ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 SQARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
+ I +TI A ++ G+ GV ++RVSGP +++ K+PKPRYA D
Sbjct: 1 MQINDTIVAQATAPGRGGVGILRVSGPQAALVAETVLG----KLPKPRYADYLPFRD-AD 55
Query: 84 KVVLDEGLCLWFP 96
VLD+G+ ++FP
Sbjct: 56 GSVLDQGIAIYFP 68
>gi|422020441|ref|ZP_16366980.1| tRNA modification GTPase TrmE [Providencia alcalifaciens Dmel2]
gi|414101577|gb|EKT63176.1| tRNA modification GTPase TrmE [Providencia alcalifaciens Dmel2]
Length = 454
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 115/332 (34%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSGP +++ K+ KPRYA D VLD+G+ ++FP
Sbjct: 15 GRGGVGILRVSGPQAALVAETVLG----KLPKPRYADYLPFRD-ADGSVLDQGIAIYFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + + +R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLRRILTIANIRIANPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + A++ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSAMNSLQGAFSSHIHQLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E++ D L+ VR
Sbjct: 186 --------DGKIEAKL-------------------------------NEVVAD--LDQVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
SQ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 SQARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
+ I +TI A ++ G+ GV ++RVSGP +++ K+PKPRYA D
Sbjct: 1 MQINDTIVAQATAPGRGGVGILRVSGPQAALVAETVLG----KLPKPRYADYLPFRD-AD 55
Query: 84 KVVLDEGLCLWFP 96
VLD+G+ ++FP
Sbjct: 56 GSVLDQGIAIYFP 68
>gi|389721005|ref|ZP_10187760.1| tRNA modification GTPase TrmE [Acinetobacter sp. HA]
gi|388609102|gb|EIM38295.1| tRNA modification GTPase TrmE [Acinetobacter sp. HA]
Length = 472
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 124/343 (36%), Positives = 173/343 (50%), Gaps = 78/343 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV VIR+SGP + +++ +++ K R+A R D EV +DEGL + FP
Sbjct: 36 GRGGVGVIRLSGPKSYAIAQALT---RKELPKARFAGFRQFYDAAGEV-MDEGLAICFPN 91
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG + NA+L L +L G A+ GEFS RAF N KLDL Q EA+
Sbjct: 92 PNSFTGEDVVELQGHGGPVIQNALLARLLEL-GAIAAKAGEFSMRAFENGKLDLVQAEAI 150
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A ++ + A+ +L+ +S +N
Sbjct: 151 ADLIDATSQAAARSAVR----SLQGAFSTK---------------------------VNA 179
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI--IED----N 332
V Q++ H+ L VEA IDF E+EI + D N
Sbjct: 180 VLEQLI--------HLRLH-------------------VEAAIDFPEEEIDFLADGKILN 212
Query: 333 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
+L+ V S + Q ++ S + G +R G++ VI G+PN GKSSL+N L + +I
Sbjct: 213 LLDGVSSAITQ--------VQQSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGIERAI 264
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
VT I GTTRDV+ + + + G P+ L DTAGLR T DI+E EG
Sbjct: 265 VTDIAGTTRDVLHEKITLNGLPITLTDTAGLR-ETGDIVEKEG 306
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 24/138 (17%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TI A+++ G+ GV VIR+SGP + +++ +++PK R+A R D + V+
Sbjct: 26 TTIAAIATPPGRGGVGVIRLSGPKSYAIAQALT---RKELPKARFAGFRQFYDAAGE-VM 81
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLNALK----------------SMACYPDQK 127
DEGL + FP + G V+ + GP NAL SM + + K
Sbjct: 82 DEGLAICFPNPNSFTGEDVVELQGHGGPVIQNALLARLLELGAIAAKAGEFSMRAFENGK 141
Query: 128 VSKPRYASLRNIVDPVSE 145
+ + ++ +++D S+
Sbjct: 142 LDLVQAEAIADLIDATSQ 159
>gi|374571860|ref|ZP_09644956.1| tRNA modification GTPase TrmE [Bradyrhizobium sp. WSM471]
gi|374420181|gb|EHQ99713.1| tRNA modification GTPase TrmE [Bradyrhizobium sp. WSM471]
Length = 452
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 116/333 (34%), Positives = 170/333 (51%), Gaps = 65/333 (19%)
Query: 103 VSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSF 162
++V+RVSGP L ++A K+ PR AS R + D + + D+ + LWFP P S
Sbjct: 20 LAVVRVSGPGASLVLTTLAG----KLPAPRQASRRLLHDGAGQPI-DDSVVLWFPGPASA 74
Query: 163 TGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLI 222
TGED EF VHG AV+ A+ A++ +P +R AEPGEF++RAF N KLDLT+ E L DLI
Sbjct: 75 TGEDVAEFHVHGGRAVLAALFAAISIIPNMRAAEPGEFTRRAFENGKLDLTEAEGLDDLI 134
Query: 223 QAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQ 282
A+T+ QR++AL Q++G L +WR+ I+E+ A +EA IDFS++ + ++
Sbjct: 135 HADTDRQRRQALRQLQGLLGDRARDWRERIIEASALIEAGIDFSDEGDVPAELMAPAVKA 194
Query: 283 VVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVV 342
+ LH I + + + R+R G+ V+ +A E N+ +
Sbjct: 195 ISALHDEIAEVLAAQGQA-ERLRDGL--VVAIAG-------------EPNVGKST----- 233
Query: 343 QLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRD 402
L N+ R V + P+ G TTRD
Sbjct: 234 -----------LINQLARR------DVAIVSPHAG---------------------TTRD 255
Query: 403 VIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
VIE LD+ GYPV ++DTAG+R T D +E EG
Sbjct: 256 VIEVQLDLDGYPVTVIDTAGIR-ETDDPVEQEG 287
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TIFALSSG ++V+RVSGP L ++A K+P PR AS R + D + +
Sbjct: 6 QTIFALSSGRPPSALAVVRVSGPGASLVLTTLAG----KLPAPRQASRRLLHDGAGQPI- 60
Query: 88 DEGLCLWFP 96
D+ + LWFP
Sbjct: 61 DDSVVLWFP 69
>gi|309751333|gb|ADO81317.1| tRNA modification GTPase mnmE [Haemophilus influenzae R2866]
Length = 461
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/332 (34%), Positives = 167/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++RVSGP +++ K KPR A D +LD+G+ L+F
Sbjct: 22 GRGGIGILRVSGPLATKVAQAILG----KCPKPRMADYLPFKD-ADGTILDQGIALYFKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L + ++ G+R A PGEFS++AF N+KLDL Q EA+
Sbjct: 77 PNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLDLAQAEAI 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G + + ++ VEA IDF ++EI D + +
Sbjct: 137 ADLIDATSEQAVRSALKSLQGEFSKKVNALVDSVIYLRTYVEASIDFPDEEI--DFLADG 194
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+I + ++ +I N L VR
Sbjct: 195 ------------------------KIEANLRGII-------------------NQLEDVR 211
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S+ Q GSI +R G+K VI G PN GKSSL+N L + +IVT I G
Sbjct: 212 SEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGHEAAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T ++
Sbjct: 257 TTRDVLREHIHIDGMPLHIIDTAGLRNATDEV 288
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP +++ K PKPR A D
Sbjct: 10 MKETIVAQATAPGRGGIGILRVSGPLATKVAQAILG----KCPKPRMADYLPFKD-ADGT 64
Query: 86 VLDEGLCLWF 95
+LD+G+ L+F
Sbjct: 65 ILDQGIALYF 74
>gi|392310424|ref|ZP_10272958.1| tRNA modification GTPase TrmE [Pseudoalteromonas citrea NCIMB 1889]
Length = 454
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 121/334 (36%), Positives = 169/334 (50%), Gaps = 77/334 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSG TL L + K K RYA + + LD+G+ L+F
Sbjct: 15 GRGGVGIIRVSG--TLATLVAEQIVG--KCPKTRYAEYLPF-NTLQGEQLDQGIALYFAG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG VI+ +L + ++ G+R A+PGEFS+RAF N+K+DLTQ EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVVIDMLLKEICQISGVRLAQPGEFSERAFLNDKMDLTQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + ALH ++G DFS N +NT
Sbjct: 130 ADLINATSEQAAKSALHSLQG------------------------DFS-------NHINT 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNI----- 333
+ +V+ L +E I+ ++ IDF D + ++
Sbjct: 159 LVEKVIHLRMYVEAAIDFPDE--------------------EIDFLSDGKVSGDLNAIID 198
Query: 334 -LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
LN VR Q Q GSI +R G++ VI G PN GKSSL+N L ++ +I
Sbjct: 199 QLNEVRKQAKQ--GSI-------------MREGMRVVIAGRPNAGKSSLLNALAGREAAI 243
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426
VT I GTTRDV+ +H+ I G P+ ++DTAGLR +
Sbjct: 244 VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDS 277
>gi|359435231|ref|ZP_09225454.1| tRNA modification GTPase MnmE [Pseudoalteromonas sp. BSi20652]
gi|357918132|dbj|GAA61703.1| tRNA modification GTPase MnmE [Pseudoalteromonas sp. BSi20652]
Length = 488
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 118/334 (35%), Positives = 166/334 (49%), Gaps = 77/334 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSG + KS+A K+ K RYA E LD+G+ ++F
Sbjct: 49 GRGGVGIIRVSG----SLAKSVAEKVVGKIPKVRYADYVPFKSLAGEQ-LDQGIAIYFAG 103
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L ++K+ G+R A+PGEFS+RAF N+KLDLTQ EA+
Sbjct: 104 PNSFTGEDVLELQGHGGPVVLDMLLKEISKIDGVRLAKPGEFSERAFMNDKLDLTQAEAI 163
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G + + ++ VEA IDF ++EI
Sbjct: 164 ADLINATSEQAAKSALQSLQGEFSKHIETLVEKVIHLRMYVEAAIDFPDEEI-------- 215
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNI----- 333
DF D + ++
Sbjct: 216 -------------------------------------------DFLSDGKVSGDLDAIIT 232
Query: 334 -LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
LNTV +Q Q GSI +R G++ VI G PN GKSSL+N L ++ +I
Sbjct: 233 QLNTVTNQAKQ--GSI-------------MREGMRVVIAGRPNAGKSSLLNALAGREAAI 277
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426
VT I GTTRDV+ +H+ I G P+ ++DTAGLR +
Sbjct: 278 VTEIAGTTRDVLREHIHIDGMPLHIIDTAGLRES 311
>gi|238750293|ref|ZP_04611795.1| tRNA modification GTPase mnmE [Yersinia rohdei ATCC 43380]
gi|238711526|gb|EEQ03742.1| tRNA modification GTPase mnmE [Yersinia rohdei ATCC 43380]
Length = 497
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 119/335 (35%), Positives = 167/335 (49%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG A S+A K+ KPRYA D + LD+G+ L+FP
Sbjct: 58 GRGGVGILRVSG----RAAASVAQAVLGKLPKPRYADYLPFKD-IDGSTLDQGIALYFPG 112
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 113 PNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDLAQAEAI 172
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 173 ADL-----------------------------------------IDASSEQ--------A 183
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
RS V L G+ VRI ++++ L VEA IDF ++EI + D
Sbjct: 184 ARSAVNSLQGAFS----------VRIHQLVEALTHLRIYVEAAIDFPDEEIDFLSDG--- 230
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+ Q+ + +E+ + + G +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 231 KIEGQLNGVMADLEQ-VRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 289
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR ++
Sbjct: 290 IAGTTRDVLREHIHIDGMPLHIIDTAGLREANDEV 324
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 10/128 (7%)
Query: 19 RRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNI 78
+R ++ +TI A ++ G+ GV ++RVSG A S+A K+PKPRYA
Sbjct: 39 KREITMSTTDTIVAQATPPGRGGVGILRVSG----RAAASVAQAVLGKLPKPRYADYLPF 94
Query: 79 VDPVSKVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRY 133
D + LD+G+ L+FP + G V+ + GP L+ LK + P ++++P
Sbjct: 95 KD-IDGSTLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGE 153
Query: 134 ASLRNIVD 141
S R ++
Sbjct: 154 FSERAFLN 161
>gi|153949187|ref|YP_001403100.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis IP
31758]
gi|166991119|sp|A7FPC2.1|MNME_YERP3 RecName: Full=tRNA modification GTPase MnmE
gi|152960682|gb|ABS48143.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis IP
31758]
Length = 454
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 122/349 (34%), Positives = 168/349 (48%), Gaps = 69/349 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG A +A K+ KPRYA D V LD+G+ L+FP
Sbjct: 15 GRGGVGILRVSG----RAASEVAHAVLGKLPKPRYADYLPFKD-VDGSTLDQGIALYFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS V L G+ I + +R +++ I E IDF D IE LN V
Sbjct: 141 ARSAVNSLQGAFSARIHQLVEALTHLRIYVEAAIDFPDEE--IDFLSDGKIEGQ-LNGVM 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + Q + + G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 198 ADLEQ--------VRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI----IETEGNLLEKNNQ 443
TTRDV+ +H+ I G P+ ++DTAGLR ++ IE N +E+ ++
Sbjct: 250 TTRDVLREHIHINGMPLHIIDTAGLREANDEVERIGIERAWNEIEQADR 298
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
++ +TI A ++ G+ GV ++RVSG A +A K+PKPRYA D V
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRVSG----RAASEVAHAVLGKLPKPRYADYLPFKD-VD 55
Query: 84 KVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRN 138
LD+G+ L+FP + G V+ + GP L+ LK + P ++++P S R
Sbjct: 56 GSTLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERA 115
Query: 139 IVD 141
++
Sbjct: 116 FLN 118
>gi|19114056|ref|NP_593144.1| mitochondrial GTPase (predicted) [Schizosaccharomyces pombe 972h-]
gi|14194952|sp|Q9UTE7.1|MSS1_SCHPO RecName: Full=tRNA modification GTPase mss1, mitochondrial; Flags:
Precursor
gi|6433990|emb|CAB60697.1| mitochondrial GTPase (predicted) [Schizosaccharomyces pombe]
Length = 496
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/328 (35%), Positives = 168/328 (51%), Gaps = 65/328 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G V+++R+SGP+ K++A V KPR ASLR I PV V+D+ L L+F K
Sbjct: 34 GTSAVAIVRISGPNACKVAKTLA----GSVPKPRIASLRTIKHPVRSEVIDKALMLYFKK 89
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTK--LPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P+SFTGED E Q+HG AV++ L A+ + +P +R A+PGEFS+RAF+N + DLTQ E
Sbjct: 90 PSSFTGEDVVELQLHGGTAVVDVTLEAIKQSGIPNIRYAKPGEFSERAFYNGRADLTQLE 149
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
L D+I A+T Q A + G++ + WR+ ++E A +EA IDFSE+ ++D
Sbjct: 150 GLIDVINAQTAEQLYSANKEAHGSIYDICFRWRKKLIEYRAFLEASIDFSEEHELDDIET 209
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
+ ++ ++ I+ HIE KC +R GI I S N
Sbjct: 210 IKLFEELNEMKDEIDAHIE-GGKCKEVLRKGINVAILGPS------------------NA 250
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+S ++ L L+N+ +ISIV+
Sbjct: 251 GKSSLINL---------LANR-------------------------------RISIVSPQ 270
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLR 424
GTTRD IE +DI G+PV+L DTAGLR
Sbjct: 271 SGTTRDAIEVLVDINGFPVLLSDTAGLR 298
>gi|59710609|ref|YP_203385.1| tRNA modification GTPase TrmE [Vibrio fischeri ES114]
gi|197334085|ref|YP_002154774.1| tRNA modification GTPase TrmE [Vibrio fischeri MJ11]
gi|423684739|ref|ZP_17659547.1| tRNA modification GTPase TrmE [Vibrio fischeri SR5]
gi|81311054|sp|Q5E8Z9.1|MNME_VIBF1 RecName: Full=tRNA modification GTPase MnmE
gi|59478710|gb|AAW84497.1| tRNA modification GTPase TrmE [Vibrio fischeri ES114]
gi|197315575|gb|ACH65022.1| tRNA modification GTPase TrmE [Vibrio fischeri MJ11]
gi|371495786|gb|EHN71380.1| tRNA modification GTPase TrmE [Vibrio fischeri SR5]
Length = 455
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 121/336 (36%), Positives = 175/336 (52%), Gaps = 73/336 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP K +A K KPRYA D + + LD+G+ L+FP
Sbjct: 16 GRGGVGIIRVSGPKA----KDVALAVIGKELKPRYAEYAPFKDE-NGLELDQGIALYFPN 70
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ ++ + K+ G+R A PGEFS+RAF N+K+DL Q EA+
Sbjct: 71 PHSFTGEDVLELQGHGGPVVMDMLIKRILKIDGIRTARPGEFSERAFLNDKMDLAQAEAI 130
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESL----ASVEAYIDFSEDEIIEDN 274
DLI A +E + AL+ ++G ++S ++ESL VEA IDF E+EI D
Sbjct: 131 ADLIDASSEEAAKSALNSLQG----VFSNKINTLVESLIYLRIYVEAAIDFPEEEI--DF 184
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
+ + ++ ++ +I DN L
Sbjct: 185 LADG------------------------KVSGDLQGII------------------DN-L 201
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
N VR + Q G+I + G+++ VI G PN GKSSL+N L K +IVT
Sbjct: 202 NAVRKEANQ--GAIMRE-------GMKV------VIAGRPNAGKSSLLNALSGKDTAIVT 246
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 247 DIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 282
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP K +A K KPRYA D + + L
Sbjct: 6 DTIVAQATAPGRGGVGIIRVSGPKA----KDVALAVIGKELKPRYAEYAPFKDE-NGLEL 60
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 61 DQGIALYFPNPHSFTGEDVLELQG 84
>gi|242241426|ref|YP_002989607.1| tRNA modification GTPase TrmE [Dickeya dadantii Ech703]
gi|242133483|gb|ACS87785.1| tRNA modification GTPase TrmE [Dickeya dadantii Ech703]
Length = 453
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 167/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ +PR+A D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISGAAAAAVAQAVLG----KLPRPRHADYLPFRD-TDGSVLDQGIALWFPA 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + P +R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILAQPDVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + A++ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSAVNSLQGAFSTHVHQLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I + L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NDVIAN--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+Q Q G +R G+K VI G PN GKSSL+N L + +IVT I G
Sbjct: 205 AQARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+P+PR+A D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGAAAAAVAQAVLG----KLPRPRHADYLPFRD-TDGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + PD ++++P S R ++
Sbjct: 60 DQGIALWFPAPNSFTGEDVLELQGHGGPVILDLLLKRILAQPDVRIARPGEFSERAFLN 118
>gi|420754239|ref|ZP_15229651.1| tRNA modification GTPase TrmE [Yersinia pestis PY-65]
gi|391622369|gb|EIS63301.1| tRNA modification GTPase TrmE [Yersinia pestis PY-65]
Length = 454
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 122/349 (34%), Positives = 168/349 (48%), Gaps = 69/349 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG A +A K+ KPRYA D V LD+G+ L+FP
Sbjct: 15 GRGGVGILRVSG----RAASEVAHAVLGKLPKPRYADYLPFKD-VDGSTLDQGIALYFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS V L G+ I + +R +++ I E IDF D IE LN V
Sbjct: 141 ARSAVNSLQGAFSARIHQLVEALTHLRIYVEAAIDFPDEE--IDFLSDGKIEGQ-LNGVM 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + Q + + G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 198 ADLEQ--------VRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI----IETEGNLLEKNNQ 443
TTRDV+ +H+ I G P+ ++DTAGLR ++ IE N +E+ ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREANDEVERIGIERAWNEIEQADR 298
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
++ +TI A ++ G+ GV ++RVSG A +A K+PKPRYA D V
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRVSG----RAASEVAHAVLGKLPKPRYADYLPFKD-VD 55
Query: 84 KVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRN 138
LD+G+ L+FP + G V+ + GP L+ LK + P ++++P S R
Sbjct: 56 GSTLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERA 115
Query: 139 IVD 141
++
Sbjct: 116 FLN 118
>gi|392547701|ref|ZP_10294838.1| tRNA modification GTPase TrmE [Pseudoalteromonas rubra ATCC 29570]
Length = 454
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 119/328 (36%), Positives = 171/328 (52%), Gaps = 65/328 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IR+SG TL + +A K K RYA E LD+G+ L+F
Sbjct: 15 GRGGVGIIRISG--TLA--EQVAHKILGKCPKTRYAEYLPFQTLQGEQ-LDQGIALFFKG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L ++++ G+R A+PGEFS+RAF N+KLDLTQ EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVVLDMLLKEISQVEGVRLAKPGEFSERAFMNDKLDLTQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + ALH ++G+ + + + ++ VEA IDF ++EI + L+
Sbjct: 130 ADLINATSEQAAKSALHSLQGDFSKHINALVEQVIHLRMYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
++ +K++I SV VR
Sbjct: 187 -----------------------GKVAGDLKAIIAQLSV-------------------VR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
Q Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 QQAKQ--GSI-------------MREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTT 426
TTRDV+ +H+ I G P+ ++DTAGLR +
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDS 277
>gi|156048568|ref|XP_001590251.1| hypothetical protein SS1G_09015 [Sclerotinia sclerotiorum 1980]
gi|154693412|gb|EDN93150.1| hypothetical protein SS1G_09015 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 502
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/314 (36%), Positives = 162/314 (51%), Gaps = 68/314 (21%)
Query: 124 PDQKVSKPRYASLRNIVDPVSEV--VLD-EGLCLWFPKPNSFTGEDCCEFQVHGSIAVIN 180
P + + KPRYA++R + +P++ +LD + L L+FP P + TGED E VHG A +
Sbjct: 27 PSKPIPKPRYAAVRTLYEPLAPTRNILDSDALVLYFPAPKTVTGEDVLELHVHGGSATVK 86
Query: 181 AILGAL---TKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQM 237
A+L A+ T +R AEPGEF++RAF NN+LDL Q EAL D + AETE QR+ A+
Sbjct: 87 AVLSAIPQCTSPAKIRYAEPGEFTRRAFQNNRLDLAQVEALSDTLSAETEQQRRAAVRGT 146
Query: 238 KGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELS 297
GNL + Y EA+ R Q++ G +E
Sbjct: 147 SGNLGRTY--------------EAW-----------------RQQLLYARGELE------ 169
Query: 298 NKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDN---ILNTVRSQVVQLHGSIEKHIEL 354
A IDFSED+ +++ +L V +QV + SI H
Sbjct: 170 ---------------------ALIDFSEDQHFDESPAELLWNVTAQVEVMLESIAAHESA 208
Query: 355 SNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP 414
S++ G ++ GI+ ++G PN GKSSL+N + ++ SIV+ GTTRD++E LDI GY
Sbjct: 209 SHR-GELLKKGIRISLLGPPNAGKSSLLNQIVGREASIVSQEAGTTRDIVEVSLDIRGYL 267
Query: 415 VILLDTAGLRTTTS 428
DTAGLRT S
Sbjct: 268 CTFADTAGLRTQVS 281
>gi|22127986|ref|NP_671409.1| tRNA modification GTPase TrmE [Yersinia pestis KIM10+]
gi|45443733|ref|NP_995272.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Microtus str.
91001]
gi|108810138|ref|YP_654054.1| tRNA modification GTPase TrmE [Yersinia pestis Antiqua]
gi|108814120|ref|YP_649887.1| tRNA modification GTPase TrmE [Yersinia pestis Nepal516]
gi|145601169|ref|YP_001165245.1| tRNA modification GTPase TrmE [Yersinia pestis Pestoides F]
gi|150260963|ref|ZP_01917691.1| putative thiophene and furan oxidation protein [Yersinia pestis
CA88-4125]
gi|162421232|ref|YP_001608454.1| tRNA modification GTPase TrmE [Yersinia pestis Angola]
gi|165926155|ref|ZP_02221987.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165939964|ref|ZP_02228501.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis
str. IP275]
gi|166009545|ref|ZP_02230443.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166213299|ref|ZP_02239334.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167401538|ref|ZP_02307032.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167422868|ref|ZP_02314621.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167425489|ref|ZP_02317242.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|229839810|ref|ZP_04459969.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
pestis biovar Orientalis str. PEXU2]
gi|229841895|ref|ZP_04462051.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
pestis biovar Orientalis str. India 195]
gi|229896772|ref|ZP_04511935.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
pestis Pestoides A]
gi|229904660|ref|ZP_04519771.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
pestis Nepal516]
gi|270488372|ref|ZP_06205446.1| tRNA modification GTPase TrmE [Yersinia pestis KIM D27]
gi|294505627|ref|YP_003569689.1| tRNA modification GTPase [Yersinia pestis Z176003]
gi|384124196|ref|YP_005506816.1| tRNA modification GTPase [Yersinia pestis D106004]
gi|384128064|ref|YP_005510678.1| tRNA modification GTPase [Yersinia pestis D182038]
gi|384138047|ref|YP_005520749.1| tRNA modification GTPase TrmE [Yersinia pestis A1122]
gi|384416929|ref|YP_005626291.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
pestis biovar Medievalis str. Harbin 35]
gi|420549349|ref|ZP_15047070.1| tRNA modification GTPase TrmE [Yersinia pestis PY-01]
gi|420554702|ref|ZP_15051844.1| tRNA modification GTPase TrmE [Yersinia pestis PY-02]
gi|420560337|ref|ZP_15056726.1| tRNA modification GTPase TrmE [Yersinia pestis PY-03]
gi|420565702|ref|ZP_15061563.1| tRNA modification GTPase TrmE [Yersinia pestis PY-04]
gi|420570724|ref|ZP_15066132.1| tRNA modification GTPase TrmE [Yersinia pestis PY-05]
gi|420576416|ref|ZP_15071271.1| tRNA modification GTPase TrmE [Yersinia pestis PY-06]
gi|420581686|ref|ZP_15076070.1| tRNA modification GTPase TrmE [Yersinia pestis PY-07]
gi|420587104|ref|ZP_15080972.1| tRNA modification GTPase TrmE [Yersinia pestis PY-08]
gi|420592189|ref|ZP_15085542.1| tRNA modification GTPase TrmE [Yersinia pestis PY-09]
gi|420597583|ref|ZP_15090394.1| tRNA modification GTPase TrmE [Yersinia pestis PY-10]
gi|420603271|ref|ZP_15095438.1| tRNA modification GTPase TrmE [Yersinia pestis PY-11]
gi|420608652|ref|ZP_15100326.1| tRNA modification GTPase TrmE [Yersinia pestis PY-12]
gi|420614079|ref|ZP_15105188.1| tRNA modification GTPase TrmE [Yersinia pestis PY-13]
gi|420619408|ref|ZP_15109819.1| tRNA modification GTPase TrmE [Yersinia pestis PY-14]
gi|420624716|ref|ZP_15114618.1| tRNA modification GTPase TrmE [Yersinia pestis PY-15]
gi|420629685|ref|ZP_15119128.1| tRNA modification GTPase TrmE [Yersinia pestis PY-16]
gi|420634853|ref|ZP_15123756.1| tRNA modification GTPase TrmE [Yersinia pestis PY-19]
gi|420640129|ref|ZP_15128508.1| tRNA modification GTPase TrmE [Yersinia pestis PY-25]
gi|420645570|ref|ZP_15133492.1| tRNA modification GTPase TrmE [Yersinia pestis PY-29]
gi|420650903|ref|ZP_15138286.1| tRNA modification GTPase TrmE [Yersinia pestis PY-32]
gi|420656521|ref|ZP_15143350.1| tRNA modification GTPase TrmE [Yersinia pestis PY-34]
gi|420661965|ref|ZP_15148202.1| tRNA modification GTPase TrmE [Yersinia pestis PY-36]
gi|420667311|ref|ZP_15153024.1| tRNA modification GTPase TrmE [Yersinia pestis PY-42]
gi|420672175|ref|ZP_15157457.1| tRNA modification GTPase TrmE [Yersinia pestis PY-45]
gi|420677502|ref|ZP_15162310.1| tRNA modification GTPase TrmE [Yersinia pestis PY-46]
gi|420683089|ref|ZP_15167337.1| tRNA modification GTPase TrmE [Yersinia pestis PY-47]
gi|420688465|ref|ZP_15172125.1| tRNA modification GTPase TrmE [Yersinia pestis PY-48]
gi|420693774|ref|ZP_15176764.1| tRNA modification GTPase TrmE [Yersinia pestis PY-52]
gi|420699482|ref|ZP_15181793.1| tRNA modification GTPase TrmE [Yersinia pestis PY-53]
gi|420705423|ref|ZP_15186447.1| tRNA modification GTPase TrmE [Yersinia pestis PY-54]
gi|420710655|ref|ZP_15191192.1| tRNA modification GTPase TrmE [Yersinia pestis PY-55]
gi|420716152|ref|ZP_15196058.1| tRNA modification GTPase TrmE [Yersinia pestis PY-56]
gi|420721699|ref|ZP_15200788.1| tRNA modification GTPase TrmE [Yersinia pestis PY-58]
gi|420727125|ref|ZP_15205597.1| tRNA modification GTPase TrmE [Yersinia pestis PY-59]
gi|420732622|ref|ZP_15210543.1| tRNA modification GTPase TrmE [Yersinia pestis PY-60]
gi|420737610|ref|ZP_15215046.1| tRNA modification GTPase TrmE [Yersinia pestis PY-61]
gi|420743099|ref|ZP_15219984.1| tRNA modification GTPase TrmE [Yersinia pestis PY-63]
gi|420748811|ref|ZP_15224754.1| tRNA modification GTPase TrmE [Yersinia pestis PY-64]
gi|420760307|ref|ZP_15234451.1| tRNA modification GTPase TrmE [Yersinia pestis PY-66]
gi|420765430|ref|ZP_15239065.1| tRNA modification GTPase TrmE [Yersinia pestis PY-71]
gi|420770633|ref|ZP_15243718.1| tRNA modification GTPase TrmE [Yersinia pestis PY-72]
gi|420775601|ref|ZP_15248228.1| tRNA modification GTPase TrmE [Yersinia pestis PY-76]
gi|420781245|ref|ZP_15253172.1| tRNA modification GTPase TrmE [Yersinia pestis PY-88]
gi|420786861|ref|ZP_15258085.1| tRNA modification GTPase TrmE [Yersinia pestis PY-89]
gi|420791872|ref|ZP_15262604.1| tRNA modification GTPase TrmE [Yersinia pestis PY-90]
gi|420797446|ref|ZP_15267611.1| tRNA modification GTPase TrmE [Yersinia pestis PY-91]
gi|420802545|ref|ZP_15272196.1| tRNA modification GTPase TrmE [Yersinia pestis PY-92]
gi|420807875|ref|ZP_15277033.1| tRNA modification GTPase TrmE [Yersinia pestis PY-93]
gi|420813308|ref|ZP_15281883.1| tRNA modification GTPase TrmE [Yersinia pestis PY-94]
gi|420818735|ref|ZP_15286822.1| tRNA modification GTPase TrmE [Yersinia pestis PY-95]
gi|420824110|ref|ZP_15291615.1| tRNA modification GTPase TrmE [Yersinia pestis PY-96]
gi|420829163|ref|ZP_15296178.1| tRNA modification GTPase TrmE [Yersinia pestis PY-98]
gi|420834756|ref|ZP_15301221.1| tRNA modification GTPase TrmE [Yersinia pestis PY-99]
gi|420839686|ref|ZP_15305683.1| tRNA modification GTPase TrmE [Yersinia pestis PY-100]
gi|420844903|ref|ZP_15310412.1| tRNA modification GTPase TrmE [Yersinia pestis PY-101]
gi|420850551|ref|ZP_15315484.1| tRNA modification GTPase TrmE [Yersinia pestis PY-102]
gi|420856308|ref|ZP_15320313.1| tRNA modification GTPase TrmE [Yersinia pestis PY-103]
gi|420861371|ref|ZP_15324803.1| tRNA modification GTPase TrmE [Yersinia pestis PY-113]
gi|421765623|ref|ZP_16202406.1| tRNA modification GTPase TrmE [Yersinia pestis INS]
gi|123073044|sp|Q1CCJ3.1|MNME_YERPN RecName: Full=tRNA modification GTPase MnmE
gi|123245359|sp|Q1C0B3.1|MNME_YERPA RecName: Full=tRNA modification GTPase MnmE
gi|166234833|sp|A4TSL0.1|MNME_YERPP RecName: Full=tRNA modification GTPase MnmE
gi|254811500|sp|A9R5S1.1|MNME_YERPG RecName: Full=tRNA modification GTPase MnmE
gi|21961132|gb|AAM87660.1|AE014013_5 GTP-binding protein [Yersinia pestis KIM10+]
gi|45438603|gb|AAS64149.1| GTP-binding protein [Yersinia pestis biovar Microtus str. 91001]
gi|108777768|gb|ABG20287.1| tRNA modification GTPase trmE [Yersinia pestis Nepal516]
gi|108782051|gb|ABG16109.1| tRNA modification GTPase trmE [Yersinia pestis Antiqua]
gi|145212865|gb|ABP42272.1| tRNA modification GTPase trmE [Yersinia pestis Pestoides F]
gi|149290371|gb|EDM40448.1| putative thiophene and furan oxidation protein [Yersinia pestis
CA88-4125]
gi|162354047|gb|ABX87995.1| tRNA modification GTPase TrmE [Yersinia pestis Angola]
gi|165912090|gb|EDR30730.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis
str. IP275]
gi|165922015|gb|EDR39192.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165991467|gb|EDR43768.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166205597|gb|EDR50077.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166958260|gb|EDR55281.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167048920|gb|EDR60328.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167055503|gb|EDR65296.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|229678778|gb|EEO74883.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
pestis Nepal516]
gi|229691234|gb|EEO83287.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
pestis biovar Orientalis str. India 195]
gi|229696176|gb|EEO86223.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
pestis biovar Orientalis str. PEXU2]
gi|229700210|gb|EEO88246.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
pestis Pestoides A]
gi|262363792|gb|ACY60513.1| tRNA modification GTPase [Yersinia pestis D106004]
gi|262367728|gb|ACY64285.1| tRNA modification GTPase [Yersinia pestis D182038]
gi|270336876|gb|EFA47653.1| tRNA modification GTPase TrmE [Yersinia pestis KIM D27]
gi|294356086|gb|ADE66427.1| tRNA modification GTPase [Yersinia pestis Z176003]
gi|320017433|gb|ADW01005.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia
pestis biovar Medievalis str. Harbin 35]
gi|342853176|gb|AEL71729.1| tRNA modification GTPase TrmE [Yersinia pestis A1122]
gi|391420283|gb|EIQ83089.1| tRNA modification GTPase TrmE [Yersinia pestis PY-03]
gi|391420336|gb|EIQ83141.1| tRNA modification GTPase TrmE [Yersinia pestis PY-02]
gi|391420354|gb|EIQ83158.1| tRNA modification GTPase TrmE [Yersinia pestis PY-01]
gi|391435299|gb|EIQ96368.1| tRNA modification GTPase TrmE [Yersinia pestis PY-04]
gi|391436688|gb|EIQ97618.1| tRNA modification GTPase TrmE [Yersinia pestis PY-05]
gi|391440039|gb|EIR00643.1| tRNA modification GTPase TrmE [Yersinia pestis PY-06]
gi|391452443|gb|EIR11846.1| tRNA modification GTPase TrmE [Yersinia pestis PY-07]
gi|391452502|gb|EIR11903.1| tRNA modification GTPase TrmE [Yersinia pestis PY-08]
gi|391454148|gb|EIR13386.1| tRNA modification GTPase TrmE [Yersinia pestis PY-09]
gi|391468041|gb|EIR25952.1| tRNA modification GTPase TrmE [Yersinia pestis PY-10]
gi|391468888|gb|EIR26724.1| tRNA modification GTPase TrmE [Yersinia pestis PY-11]
gi|391470309|gb|EIR27988.1| tRNA modification GTPase TrmE [Yersinia pestis PY-12]
gi|391484273|gb|EIR40558.1| tRNA modification GTPase TrmE [Yersinia pestis PY-13]
gi|391485487|gb|EIR41623.1| tRNA modification GTPase TrmE [Yersinia pestis PY-14]
gi|391485654|gb|EIR41771.1| tRNA modification GTPase TrmE [Yersinia pestis PY-15]
gi|391500186|gb|EIR54711.1| tRNA modification GTPase TrmE [Yersinia pestis PY-16]
gi|391500432|gb|EIR54933.1| tRNA modification GTPase TrmE [Yersinia pestis PY-19]
gi|391505219|gb|EIR59250.1| tRNA modification GTPase TrmE [Yersinia pestis PY-25]
gi|391516679|gb|EIR69549.1| tRNA modification GTPase TrmE [Yersinia pestis PY-29]
gi|391517277|gb|EIR70097.1| tRNA modification GTPase TrmE [Yersinia pestis PY-34]
gi|391517771|gb|EIR70540.1| tRNA modification GTPase TrmE [Yersinia pestis PY-32]
gi|391530423|gb|EIR82001.1| tRNA modification GTPase TrmE [Yersinia pestis PY-36]
gi|391533523|gb|EIR84787.1| tRNA modification GTPase TrmE [Yersinia pestis PY-42]
gi|391535670|gb|EIR86726.1| tRNA modification GTPase TrmE [Yersinia pestis PY-45]
gi|391549050|gb|EIR98787.1| tRNA modification GTPase TrmE [Yersinia pestis PY-47]
gi|391549101|gb|EIR98834.1| tRNA modification GTPase TrmE [Yersinia pestis PY-46]
gi|391549517|gb|EIR99215.1| tRNA modification GTPase TrmE [Yersinia pestis PY-48]
gi|391563602|gb|EIS11899.1| tRNA modification GTPase TrmE [Yersinia pestis PY-52]
gi|391565084|gb|EIS13232.1| tRNA modification GTPase TrmE [Yersinia pestis PY-53]
gi|391567888|gb|EIS15695.1| tRNA modification GTPase TrmE [Yersinia pestis PY-54]
gi|391579011|gb|EIS25193.1| tRNA modification GTPase TrmE [Yersinia pestis PY-55]
gi|391580255|gb|EIS26274.1| tRNA modification GTPase TrmE [Yersinia pestis PY-56]
gi|391590776|gb|EIS35448.1| tRNA modification GTPase TrmE [Yersinia pestis PY-58]
gi|391594342|gb|EIS38504.1| tRNA modification GTPase TrmE [Yersinia pestis PY-60]
gi|391594970|gb|EIS39065.1| tRNA modification GTPase TrmE [Yersinia pestis PY-59]
gi|391608922|gb|EIS51368.1| tRNA modification GTPase TrmE [Yersinia pestis PY-61]
gi|391609300|gb|EIS51709.1| tRNA modification GTPase TrmE [Yersinia pestis PY-63]
gi|391610749|gb|EIS52997.1| tRNA modification GTPase TrmE [Yersinia pestis PY-64]
gi|391624308|gb|EIS64965.1| tRNA modification GTPase TrmE [Yersinia pestis PY-66]
gi|391632696|gb|EIS72194.1| tRNA modification GTPase TrmE [Yersinia pestis PY-71]
gi|391634223|gb|EIS73523.1| tRNA modification GTPase TrmE [Yersinia pestis PY-72]
gi|391644648|gb|EIS82620.1| tRNA modification GTPase TrmE [Yersinia pestis PY-76]
gi|391647499|gb|EIS85122.1| tRNA modification GTPase TrmE [Yersinia pestis PY-88]
gi|391651791|gb|EIS88922.1| tRNA modification GTPase TrmE [Yersinia pestis PY-89]
gi|391657660|gb|EIS94149.1| tRNA modification GTPase TrmE [Yersinia pestis PY-90]
gi|391665134|gb|EIT00751.1| tRNA modification GTPase TrmE [Yersinia pestis PY-91]
gi|391674426|gb|EIT09033.1| tRNA modification GTPase TrmE [Yersinia pestis PY-93]
gi|391674665|gb|EIT09253.1| tRNA modification GTPase TrmE [Yersinia pestis PY-94]
gi|391674786|gb|EIT09367.1| tRNA modification GTPase TrmE [Yersinia pestis PY-92]
gi|391688650|gb|EIT21848.1| tRNA modification GTPase TrmE [Yersinia pestis PY-95]
gi|391690468|gb|EIT23493.1| tRNA modification GTPase TrmE [Yersinia pestis PY-96]
gi|391692243|gb|EIT25102.1| tRNA modification GTPase TrmE [Yersinia pestis PY-98]
gi|391705796|gb|EIT37302.1| tRNA modification GTPase TrmE [Yersinia pestis PY-99]
gi|391706487|gb|EIT37916.1| tRNA modification GTPase TrmE [Yersinia pestis PY-100]
gi|391707026|gb|EIT38415.1| tRNA modification GTPase TrmE [Yersinia pestis PY-101]
gi|391721602|gb|EIT51506.1| tRNA modification GTPase TrmE [Yersinia pestis PY-102]
gi|391721718|gb|EIT51614.1| tRNA modification GTPase TrmE [Yersinia pestis PY-103]
gi|391722592|gb|EIT52377.1| tRNA modification GTPase TrmE [Yersinia pestis PY-113]
gi|411172943|gb|EKS42992.1| tRNA modification GTPase TrmE [Yersinia pestis INS]
Length = 454
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 122/349 (34%), Positives = 168/349 (48%), Gaps = 69/349 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG A +A K+ KPRYA D V LD+G+ L+FP
Sbjct: 15 GRGGVGILRVSG----RAASEVAHAVLGKLPKPRYADYLPFKD-VDGSTLDQGIALYFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS V L G+ I + +R +++ I E IDF D IE LN V
Sbjct: 141 ARSAVNSLQGAFSARIHQLVEALTHLRIYVEAAIDFPDEE--IDFLSDGKIEGQ-LNGVM 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + Q + + G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 198 ADLEQ--------VRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI----IETEGNLLEKNNQ 443
TTRDV+ +H+ I G P+ ++DTAGLR ++ IE N +E+ ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREANDEVERIGIERAWNEIEQADR 298
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
++ +TI A ++ G+ GV ++RVSG A +A K+PKPRYA D V
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRVSG----RAASEVAHAVLGKLPKPRYADYLPFKD-VD 55
Query: 84 KVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRN 138
LD+G+ L+FP + G V+ + GP L+ LK + P ++++P S R
Sbjct: 56 GSTLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERA 115
Query: 139 IVD 141
++
Sbjct: 116 FLN 118
>gi|89067424|ref|ZP_01154937.1| tRNA modification GTPase [Oceanicola granulosus HTCC2516]
gi|89046993|gb|EAR53047.1| tRNA modification GTPase [Oceanicola granulosus HTCC2516]
Length = 422
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 170/339 (50%), Gaps = 79/339 (23%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMAC-YPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWF 156
G+ GV+V+R+SGP A++ +A P+ +LR + D E LDE L L F
Sbjct: 11 RGRAGVAVVRLSGPQARAAVERLAGPLPEDG------RTLRKLRDGADE--LDEALVLVF 62
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P+ SFTGE+ E +HGS+AVI+A+L L + LR A GEF+ RAF N +LDL Q E
Sbjct: 63 PEGRSFTGEEVVELHLHGSLAVISAVLQRLGQDRRLRMAAAGEFTNRAFVNGRLDLAQVE 122
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
L DLI AETE+Q
Sbjct: 123 GLADLIDAETEVQ----------------------------------------------- 135
Query: 277 NTVRSQVVQ-LHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILN 335
R Q V+ L G++ + EL +R +A VEA IDF+++++ ED
Sbjct: 136 ---RKQAVRALDGALGRKAELWRAQLIR---------AVALVEATIDFADEDVPED---- 179
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGV----RIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
V ++V +L + + S GV R+R+G + I+G PNVGKS+L+N L ++ +
Sbjct: 180 -VSAEVAELVEGVRTDLA-SEARGVGIAERVRAGFEVAILGAPNVGKSTLLNALAGREAA 237
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I + + GTTRDVIE +++ G PV +LDTAGLR T +
Sbjct: 238 ITSEVAGTTRDVIEVRMELAGLPVTVLDTAGLREATDQV 276
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 9/70 (12%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYA-SLRNIVDPVSKVV 86
+TIFAL+S G+ GV+V+R+SGP A++ +A P P +LR + D +
Sbjct: 2 DTIFALASARGRAGVAVVRLSGPQARAAVERLAG------PLPEDGRTLRKLRDGADE-- 53
Query: 87 LDEGLCLWFP 96
LDE L L FP
Sbjct: 54 LDEALVLVFP 63
>gi|218931079|ref|YP_002348954.1| tRNA modification GTPase TrmE [Yersinia pestis CO92]
gi|21363009|sp|Q8Z9U2.1|MNME_YERPE RecName: Full=tRNA modification GTPase MnmE
gi|115349690|emb|CAL22671.1| putative thiophene and furan oxidation protein [Yersinia pestis
CO92]
Length = 454
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 122/349 (34%), Positives = 168/349 (48%), Gaps = 69/349 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG A +A K+ KPRYA D V LD+G+ L+FP
Sbjct: 15 GRGGVGILRVSG----RAASEVAHAVLGKLPKPRYADYLPFKD-VDGSTLDQGIALYFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS V L G+ I + +R +++ I E IDF D IE LN V
Sbjct: 141 ARSAVNSLQGAFSARIHQLVEALTHLRIYVEAAIDFPDEE--IDFLSDGKIEGQ-LNGVM 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + Q + + G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 198 ADLEQ--------VRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI----IETEGNLLEKNNQ 443
TTRDV+ +H+ I G P+ ++DTAGLR ++ IE N +E+ ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREANDEVERIGIERAWNEIEQADR 298
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
++ +TI A ++ G+ GV ++RVSG A +A K+PKPRYA D V
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRVSG----RAASEVAHAVLGKLPKPRYADYLPFKD-VD 55
Query: 84 KVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRN 138
LD+G+ L+FP + G V+ + GP L+ LK + P ++++P S R
Sbjct: 56 GSTLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERA 115
Query: 139 IVD 141
++
Sbjct: 116 FLN 118
>gi|51598233|ref|YP_072424.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis IP
32953]
gi|186897489|ref|YP_001874601.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis PB1/+]
gi|81638080|sp|Q663S6.1|MNME_YERPS RecName: Full=tRNA modification GTPase MnmE
gi|254811499|sp|B2K868.1|MNME_YERPB RecName: Full=tRNA modification GTPase MnmE
gi|51591515|emb|CAH23187.1| putative thiophene and furan oxidation protein [Yersinia
pseudotuberculosis IP 32953]
gi|186700515|gb|ACC91144.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis PB1/+]
Length = 454
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 122/349 (34%), Positives = 168/349 (48%), Gaps = 69/349 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG A +A K+ KPRYA D V LD+G+ L+FP
Sbjct: 15 GRGGVGILRVSG----RAASEVAHAVLGKLPKPRYADYLPFKD-VDGSTLDQGIALYFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS V L G+ I + +R +++ I E IDF D IE LN V
Sbjct: 141 ARSAVNSLQGAFSARIHQLVEALTHLRIYVEAAIDFPDEE--IDFLSDGKIEGQ-LNGVM 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + Q + + G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 198 ADLEQ--------VRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI----IETEGNLLEKNNQ 443
TTRDV+ +H+ I G P+ ++DTAGLR ++ IE N +E+ ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREANDEVERIGIERAWNEIEQADR 298
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
++ +TI A ++ G+ GV ++RVSG A +A K+PKPRYA D V
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRVSG----RAASEVAHAVLGKLPKPRYADYLPFKD-VD 55
Query: 84 KVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRN 138
LD+G+ L+FP + G V+ + GP L+ LK + P ++++P S R
Sbjct: 56 GSTLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERA 115
Query: 139 IVD 141
++
Sbjct: 116 FLN 118
>gi|333905163|ref|YP_004479034.1| tRNA modification GTPase TrmE [Streptococcus parauberis KCTC 11537]
gi|333120428|gb|AEF25362.1| tRNA modification GTPase TrmE [Streptococcus parauberis KCTC 11537]
Length = 488
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 171/337 (50%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG L+ KS+ D + +I+DP + +LDE + +
Sbjct: 48 GEGAIGIVRLSGGQALDIAKSVFKGKDLASVASHTINYGHILDPDKDEILDEVMVSVMRE 107
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L K G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 108 PKTFTREDVVEINTHGGIAVTNEILQLLIK-HGARMAEPGEFTKRAFLNGRVDLTQAEAV 166
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+LKQL RQ ILNT
Sbjct: 167 MDIIRAKTDKAMNIAVKQLDGSLKQLIDATRQ-----------------------EILNT 203
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ +R
Sbjct: 204 -----------------------------------LAQVEVNIDYPEYDDVEEMTTALMR 228
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + +E + + + G +R G+ + I+G PNVGKSSL+N L +++ +IVT I G
Sbjct: 229 EKTQEFQTLLENLLRTARR-GKILREGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIAG 287
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 288 TTRDVIEEYVNIKGVPLKLVDTAGIR-DTEDVVEKIG 323
>gi|119467792|ref|XP_001257702.1| mitochondrial GTPase (Mss1), putative [Neosartorya fischeri NRRL
181]
gi|119405854|gb|EAW15805.1| mitochondrial GTPase (Mss1), putative [Neosartorya fischeri NRRL
181]
Length = 604
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/342 (33%), Positives = 173/342 (50%), Gaps = 73/342 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSE----VVLDEG-LC 153
G+ ++V+RVSG + +++ P + + R A++R + DP E VLD G L
Sbjct: 75 GRAAIAVVRVSGSACVQIYRALC--PSAPLPRARVAAVRTLYDPTQEPSANTVLDAGALV 132
Query: 154 LWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG----LRPAEPGEFSKRAFFNNK 209
L+FP P + TGED E +HG A++ ++L A+ + +R AEPGEF++RAF NN+
Sbjct: 133 LYFPGPKTVTGEDVLELHLHGGPAIVKSVLAAIARSNRPESLVRYAEPGEFTRRAFMNNR 192
Query: 210 LDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDE 269
LDL Q EALGD + A+TE QR+ A+ L + Y W
Sbjct: 193 LDLPQIEALGDTLTADTEQQRRLAVRGASDALSRRYESW--------------------- 231
Query: 270 IIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEII 329
R Q++ G +E A IDFSED+
Sbjct: 232 ----------RQQLLYARGELE---------------------------ALIDFSEDQYF 254
Query: 330 EDNILNTVRS---QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLC 386
+++ VRS QV L + HIE ++K G +R+GIK ++G PN GKSSL+N +
Sbjct: 255 DESPEEFVRSVAGQVRALQTQLRLHIENASK-GELLRNGIKIALLGAPNAGKSSLLNRIV 313
Query: 387 QKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428
K+ +IV++ GTTRD+++ +D+GG+ L D AG+R+ S
Sbjct: 314 GKEAAIVSTEEGTTRDIVDVGVDLGGWYCKLGDMAGIRSEKS 355
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 143/298 (47%), Gaps = 76/298 (25%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPV- 82
L +TI+ALS+ G+ ++V+RVSG + +++ P +P+ R A++R + DP
Sbjct: 61 LEADSTIYALSTAPGRAAIAVVRVSGSACVQIYRALC--PSAPLPRARVAAVRTLYDPTQ 118
Query: 83 ---SKVVLDEG-LCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRN 138
+ VLD G L L+FP GP T+
Sbjct: 119 EPSANTVLDAGALVLYFP-------------GPKTV------------------------ 141
Query: 139 IVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG----LRP 194
TGED E +HG A++ ++L A+ + +R
Sbjct: 142 ------------------------TGEDVLELHLHGGPAIVKSVLAAIARSNRPESLVRY 177
Query: 195 AEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILE 254
AEPGEF++RAF NN+LDL Q EALGD + A+TE QR+ A+ L + Y WRQ +L
Sbjct: 178 AEPGEFTRRAFMNNRLDLPQIEALGDTLTADTEQQRRLAVRGASDALSRRYESWRQQLLY 237
Query: 255 SLASVEAYIDFSEDEIIEDNILNTVRS---QVVQLHGSIEKHIELSNKCGVRIRSGIK 309
+ +EA IDFSED+ +++ VRS QV L + HIE ++K G +R+GIK
Sbjct: 238 ARGELEALIDFSEDQYFDESPEEFVRSVAGQVRALQTQLRLHIENASK-GELLRNGIK 294
>gi|163783084|ref|ZP_02178079.1| tRNA modification GTPase TrmE [Hydrogenivirga sp. 128-5-R1-1]
gi|159881764|gb|EDP75273.1| tRNA modification GTPase TrmE [Hydrogenivirga sp. 128-5-R1-1]
Length = 448
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 112/331 (33%), Positives = 168/331 (50%), Gaps = 70/331 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + V+R++G D L + + + + KPRYA +VD E + DEG+ +++
Sbjct: 13 GESAIGVVRLTGKDVLPTV--LRYFRTKSEVKPRYAHYGTLVDERGEPI-DEGILVYYRA 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNS+TGED E +HG+ ++ +L L G R AEPGEF++RAF N KLDL Q EA+
Sbjct: 70 PNSYTGEDMVELSLHGNPLILKRVL-ELFLSAGCRLAEPGEFTRRAFLNGKLDLAQAEAV 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
+LI A+TEL R+ +L Q++G L + +N+
Sbjct: 129 AELISAKTELARRASLRQLRGELSRY-------------------------------VNS 157
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+R +++L IE IE S E++I +
Sbjct: 158 LRESLLELSAYIEADIEFS--------------------------------EEDIPTLTK 185
Query: 339 SQVVQLHGSIEKHIEL---SNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
QV+ + + + I+ + K G +R GIK IVG PNVGKSSL N L ++ +IVT
Sbjct: 186 EQVIGMVDRVLEGIDQLLSTAKTGKLLREGIKLAIVGRPNVGKSSLFNALLKEDRAIVTD 245
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426
I GTTRD IE+ L++ G PV L+DTAG+R +
Sbjct: 246 IEGTTRDYIEESLNLRGIPVRLIDTAGIRES 276
>gi|399216994|emb|CCF73681.1| unnamed protein product [Babesia microti strain RI]
Length = 471
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/355 (32%), Positives = 180/355 (50%), Gaps = 84/355 (23%)
Query: 99 GKCGVSVIRVSGPDT---LNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLW 155
G CG++++RVSGP N + + ++K+ R S+ N +P+ D+ +CL
Sbjct: 56 GGCGIAIVRVSGPKVGLIFNRITGDSF--NKKLLYKRLFSIEN--EPI-----DDAICLL 106
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG---LRPAEPGEFSKRAFFNNKLDL 212
FP P S+TGED EF HGS AVINA+ A++++ +R A+ GEF +RAF+N K+ L
Sbjct: 107 FPSPKSYTGEDVIEFHTHGSRAVINALFDAISRVDDSGTIRIADRGEFIRRAFYNGKVKL 166
Query: 213 TQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIE 272
+Q EA+GDLI A T+ QR+ A M G+L LY +W ++ +L+++EA IDF E+ +
Sbjct: 167 SQVEAIGDLIAANTQEQRKLAFSAMSGSLYNLYKKWSDNLIYALSNLEACIDFGEESSSD 226
Query: 273 DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDN 332
+L+T++ V+ + K N C V
Sbjct: 227 FQLLDTIK--VLNATNLVCK-----NNCNVN----------------------------- 250
Query: 333 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPN-------VGKSSLMNFL 385
N+ R ++ R+ +I+G PN GKS+L+N +
Sbjct: 251 -FNSRRGHII--------------------RNSANVIILGTPNSGNFEDDTGKSTLINSI 289
Query: 386 CQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR-----TTTSDIIETEG 435
Q+ ISIV+++ GTTRD++ H+DI G+P DTAG+R T + IE EG
Sbjct: 290 SQETISIVSNLAGTTRDLVTAHVDIDGFPFTFTDTAGIRHIDNHLLTHNSIEAEG 344
>gi|170026449|ref|YP_001722954.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis YPIII]
gi|205829188|sp|B1JRQ1.1|MNME_YERPY RecName: Full=tRNA modification GTPase MnmE
gi|169752983|gb|ACA70501.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis YPIII]
Length = 454
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 122/349 (34%), Positives = 168/349 (48%), Gaps = 69/349 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG A +A K+ KPRYA D V LD+G+ L+FP
Sbjct: 15 GRGGVGILRVSG----RAASEVAHAVLGKLPKPRYADYLPFKD-VDGSTLDQGIALYFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS V L G+ I + +R +++ I E IDF D IE LN V
Sbjct: 141 ARSAVNSLQGAFSARIHQLVEALTHLRIYVEAAIDFPDEE--IDFLSDGKIEGQ-LNGVM 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + Q + + G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 198 ADLEQ--------VRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI----IETEGNLLEKNNQ 443
TTRDV+ +H+ I G P+ ++DTAGLR ++ IE N +E+ ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREANDEVERIGIERAWNEIEQADR 298
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
++ +TI A ++ G+ GV ++RVSG A +A K+PKPRYA D V
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRVSG----RAASEVAHAVLGKLPKPRYADYLPFKD-VD 55
Query: 84 KVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRN 138
LD+G+ L+FP + G V+ + GP L+ LK + P ++++P S R
Sbjct: 56 GSTLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERA 115
Query: 139 IVD 141
++
Sbjct: 116 FLN 118
>gi|167626215|ref|YP_001676509.1| tRNA modification GTPase TrmE [Shewanella halifaxensis HAW-EB4]
gi|189036208|sp|B0TQH0.1|MNME_SHEHH RecName: Full=tRNA modification GTPase MnmE
gi|167356237|gb|ABZ78850.1| tRNA modification GTPase TrmE [Shewanella halifaxensis HAW-EB4]
Length = 453
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 175/340 (51%), Gaps = 72/340 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSG N ++ + + K RYA + + EV+ D+G+ L+F
Sbjct: 14 GRGGVGIIRVSGDLASNVAMAVLGH----IPKTRYADYCDFKEDSGEVI-DQGIALFFKG 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ ++ + ++ GLR A+PGEFS++AF N+KLDLTQ EA+
Sbjct: 69 PNSFTGEDVLELQGHGGQIVLDMLIKRVMEVDGLRIAKPGEFSEQAFMNDKLDLTQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G +FS
Sbjct: 129 ADLIDATSEQAAKSALNSLQG------------------------EFS------------ 152
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI---IEDNILN 335
Q+H +EK L VEA IDF ++E+ + I
Sbjct: 153 -----TQVHDLVEKVTNLR-----------------LYVEAAIDFPDEEVDFLSDGKIAA 190
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
++ + +L G ++ S K G IR G+K VI G PN GKSSL+N L K+ +IVT
Sbjct: 191 SLNGIIGKLDG-----VQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESAIVTE 245
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I GTTRDV+ +H+ + G P+ ++DTAGLR T+D +E G
Sbjct: 246 IAGTTRDVLREHIHLDGMPLHIIDTAGLR-DTADTVEKIG 284
>gi|255020153|ref|ZP_05292222.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Acidithiobacillus
caldus ATCC 51756]
gi|340783570|ref|YP_004750177.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Acidithiobacillus
caldus SM-1]
gi|254970295|gb|EET27788.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Acidithiobacillus
caldus ATCC 51756]
gi|340557721|gb|AEK59475.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Acidithiobacillus
caldus SM-1]
Length = 449
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/340 (34%), Positives = 176/340 (51%), Gaps = 71/340 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SGP L +++ C Q+ +PR A L+ D LD+G+ L+FP
Sbjct: 19 GEAGVGILRLSGPRALAIARAL-CR-RQRPWEPRRAYLQRFYDDRGGA-LDQGIVLYFPA 75
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HGS V+ + + +L G R A PGEFS+RAF N ++DL Q E L
Sbjct: 76 PNSFTGEDVVELQGHGSPLVLQLLQQSARRL-GARDARPGEFSERAFLNGRMDLAQAEGL 134
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A++E Q + AL ++G FSE +N
Sbjct: 135 ADLIHAQSESQARAALASLEGR------------------------FSEK-------INE 163
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEII---EDNILN 335
+R ++Q+ LA EA +DFSE+++ D +
Sbjct: 164 LREAILQV---------------------------LALCEAGLDFSEEDLGSAHRDALEQ 196
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+++ +L +++ + G R+ G + ++G PNVGKSSL+N L ++ +IVT+
Sbjct: 197 ALKTSQRRLESLLQQA-----RQGARLARGARVALIGRPNVGKSSLLNALAGRESAIVTA 251
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I GTTRD++ + L IGG V L+DTAGL+ ++D +E EG
Sbjct: 252 IAGTTRDLVREELQIGGLTVELVDTAGLQ-DSADPVEREG 290
>gi|297581962|ref|ZP_06943882.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae RC385]
gi|297533829|gb|EFH72670.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae RC385]
Length = 464
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/340 (34%), Positives = 173/340 (50%), Gaps = 72/340 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP + + +++ + +PRYA D + LD+G+ L+FP
Sbjct: 25 GRGGVGIIRVSGPLSAHVAQTVTG----RTLRPRYAEYLPFTDEDGQQ-LDQGIALFFPN 79
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ ++ + ++ G+RPA PGEFS+ AF N+K+DLTQ EA+
Sbjct: 80 PHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSEHAFLNDKMDLTQAEAI 139
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E
Sbjct: 140 ADLIDASSE-------------------------------------------------QA 150
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
+S + L G K RI + ++S+I L VEA IDF E+EI + D ++
Sbjct: 151 AKSALQSLQGEFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLADGKVS 200
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
++ ++ + +N+ G +R G+K VI G PN GKSSL+N L K+ +IVT
Sbjct: 201 ADLQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTD 256
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I GTTRDV+ +H+ I G P+ ++DTAGLR SD +E G
Sbjct: 257 IAGTTRDVLREHIHIDGMPLHIIDTAGLR-DASDAVEKIG 295
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + + +++ + +PRYA D + L
Sbjct: 15 DTIVAQATALGRGGVGIIRVSGPLSAHVAQTVTG----RTLRPRYAEYLPFTDEDGQ-QL 69
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 70 DQGIALFFPNPHSFTGEDVLELQG 93
>gi|150398397|ref|YP_001328864.1| tRNA modification GTPase TrmE [Sinorhizobium medicae WSM419]
gi|205415806|sp|A6UEE9.1|MNME_SINMW RecName: Full=tRNA modification GTPase MnmE
gi|150029912|gb|ABR62029.1| tRNA modification GTPase TrmE [Sinorhizobium medicae WSM419]
Length = 440
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 134/213 (62%), Gaps = 6/213 (2%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV++IRVSGP T +AL + C P + R A+LR I S++ LD GL L+FP P
Sbjct: 17 AGVALIRVSGPATADALARL-CGP---LPPARVATLRTIRTRNSDI-LDSGLVLYFPGPA 71
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDCCE QVHG AV++AIL L + GLR AE GEF++RAF N KLDL + E L D
Sbjct: 72 SFTGEDCCELQVHGGRAVVSAILDELAAMDGLRHAEAGEFARRAFQNGKLDLVEVEGLAD 131
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI AETE+QR+ A+ Q G LY+ W + + + A +EA +DF++++ I ++ +
Sbjct: 132 LIAAETEMQRRLAVEQSGGGQSALYAGWARRLTHARAMIEAELDFADEDDIPGSVSAAIW 191
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
+ + +L I++HI + + IR G+K VI
Sbjct: 192 TDIGRLREEIDEHIARAGVAEI-IRDGLKIVIA 223
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 79/121 (65%), Gaps = 2/121 (1%)
Query: 315 ASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEP 374
A +EA +DF++++ I ++ + + + +L I++HI + + IR G+K VI GEP
Sbjct: 168 AMIEAELDFADEDDIPGSVSAAIWTDIGRLREEIDEHIARAGVAEI-IRDGLKIVIAGEP 226
Query: 375 NVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETE 434
N GKSSL+N L Q+ I+IVT I GTTRDV+ L + G+ V L DTAGLR T +++E E
Sbjct: 227 NAGKSSLLNALAQRDIAIVTEIAGTTRDVLSVDLSLAGFSVKLFDTAGLR-ETDEVVERE 285
Query: 435 G 435
G
Sbjct: 286 G 286
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 5/73 (6%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
+ +TI+ALSSG GV++IRVSGP T +AL + C P +P R A+LR I S
Sbjct: 1 MQFTDTIYALSSGSPPAGVALIRVSGPATADALARL-CGP---LPPARVATLRTIRTRNS 56
Query: 84 KVVLDEGLCLWFP 96
+LD GL L+FP
Sbjct: 57 D-ILDSGLVLYFP 68
>gi|395800065|ref|ZP_10479344.1| tRNA modification GTPase TrmE [Pseudomonas sp. Ag1]
gi|395335907|gb|EJF67769.1| tRNA modification GTPase TrmE [Pseudomonas sp. Ag1]
Length = 456
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 118/337 (35%), Positives = 161/337 (47%), Gaps = 74/337 (21%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVS----KPRYASLRNIVDPVSEVVLDEGLC 153
G+ GV ++R+SGP +A Q +S KPRYA + E VLDEG+
Sbjct: 15 QGRGGVGIVRISGP--------LAGVAAQAISGRELKPRYAHYGPFLG-ADEEVLDEGIA 65
Query: 154 LWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLT 213
L+FP PNSFTGED E Q HG V++ +L +L G R A PGEFS+RAF N+KLDL
Sbjct: 66 LYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQL-GCRLARPGEFSERAFLNDKLDLA 124
Query: 214 QTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIED 273
Q EA+ DLI+A + + AL ++G + ++ VEA IDF E+EI
Sbjct: 125 QAEAIADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLISLRIYVEAAIDFPEEEI--- 181
Query: 274 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNI 333
+ V A +D DE
Sbjct: 182 ------------------------------------DFLADGHVLAMLDKVRDE------ 199
Query: 334 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIV 393
L+TV + Q G +R G+ VI G PN GKSSL+N L ++ +IV
Sbjct: 200 LSTVLREAGQ---------------GALLRDGMTVVIAGRPNAGKSSLLNALAGREAAIV 244
Query: 394 TSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
T I GTTRD++ +H+ I G P+ ++DTAGLR T +
Sbjct: 245 TEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTDDQV 281
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 25 AIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSK 84
A + TI A+++ G+ GV ++R+SGP A ++++ + KPRYA + +
Sbjct: 3 APRETIAAVATAQGRGGVGIVRISGPLAGVAAQAISG----RELKPRYAHYGPFLG-ADE 57
Query: 85 VVLDEGLCLWFP 96
VLDEG+ L+FP
Sbjct: 58 EVLDEGIALYFP 69
>gi|190171174|gb|ACE63657.1| ThdF [Citrobacter koseri]
Length = 439
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 169/335 (50%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 122 ADL-----------------------------------------IDASSEQ--------A 132
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEIIEDNILNTV 337
RS + L G+ R+ + ++++ L VEA IDF ++EI + L+
Sbjct: 133 ARSALNSLQGAFS----------ARVNNLVEALTHLRIYVEAAIDFPDEEI---DFLSDG 179
Query: 338 RSQVVQLHGSIEK--HIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+ + QL+G I + + G +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 180 KIEA-QLNGVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 273
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++R+SG L A + +A K+PKPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 110
>gi|121602914|ref|YP_988349.1| tRNA modification GTPase TrmE [Bartonella bacilliformis KC583]
gi|421760169|ref|ZP_16196989.1| tRNA modification GTPase TrmE [Bartonella bacilliformis INS]
gi|205829116|sp|A1UQU6.1|MNME_BARBK RecName: Full=tRNA modification GTPase MnmE
gi|120615091|gb|ABM45692.1| tRNA modification GTPase TrmE [Bartonella bacilliformis KC583]
gi|411176562|gb|EKS46581.1| tRNA modification GTPase TrmE [Bartonella bacilliformis INS]
Length = 435
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 167/330 (50%), Gaps = 66/330 (20%)
Query: 102 GVSVIRVSGPDTLNALKSM-ACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+VIRVSGP ++ +K++ C P K R+ +++ LD L ++FP+P+
Sbjct: 15 GVAVIRVSGPRVVDIVKTLCGCLP-----KARFMHHGDLI-ARDGSFLDSALTVFFPRPH 68
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDC EF +HG AV+N L L+ G R AE GEFS+RAF K+DL Q E L D
Sbjct: 69 SFTGEDCAEFHLHGGKAVVNRFLDELSTFTGCRLAEAGEFSRRAFIEGKIDLVQAEGLAD 128
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI+AETE QR+ A+ G+L +LY WR ++ + A +EA +DFS++ + + + V
Sbjct: 129 LIEAETESQRRLAVMGANGHLTELYRHWRNKLMTARALIEAELDFSDEADVSNFSSDKVW 188
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
+ +L S+ +HI + + +R GIK VI + N+ +S
Sbjct: 189 QNMQELSDSLCEHIAEGERANI-LRDGIKVVIV------------------GVPNSGKSS 229
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
++ + + G P ++IVT GTT
Sbjct: 230 II-------------------------NRLAGRP---------------VAIVTEEEGTT 249
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
RD +E L +GG PV+++DTAG R T S I
Sbjct: 250 RDALEVRLILGGLPVLVMDTAGFRETESKI 279
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSM-ACYPDQKVPKPRYASLRNIVDPVSKVV 86
+TIFA+SSG GV+VIRVSGP ++ +K++ C +PK R+ +++
Sbjct: 2 DTIFAVSSGLLPSGVAVIRVSGPRVVDIVKTLCGC-----LPKARFMHHGDLI-ARDGSF 55
Query: 87 LDEGLCLWFPR 97
LD L ++FPR
Sbjct: 56 LDSALTVFFPR 66
>gi|225870695|ref|YP_002746642.1| tRNA modification GTPase TrmE [Streptococcus equi subsp. equi 4047]
gi|225700099|emb|CAW94188.1| tRNA modification GTPase TrmE [Streptococcus equi subsp. equi 4047]
Length = 458
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 117/337 (34%), Positives = 170/337 (50%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG L+ KS+ D + +I+ P + V+DE +
Sbjct: 18 GEGAIGIVRLSGTKALDIAKSIFKGKDLTTVASHTLNYGHIIKPSTGEVIDEVMVSVMLA 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L K G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 78 PKTFTREDVIEINTHGGIAVTNDILQLLIK-QGARMAEPGEFTKRAFLNGRIDLTQAEAV 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI+A+T+ A+ Q+ G+L QL S+ RQ ILNT
Sbjct: 137 MDLIRAKTDKAMSIAIKQLDGSLSQLISDTRQ-----------------------EILNT 173
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ +R
Sbjct: 174 -----------------------------------LAQVEVNIDYPEYDDVEEMTTALLR 198
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + +E+ + + K G +R G+ + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 199 DKTREFQTLLEQLLR-TAKRGKILREGLSTAIIGRPNVGKSSLLNTLLREDKAIVTDIAG 257
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 258 TTRDVIEEYVNIKGIPLKLVDTAGIR-ETDDLVEQIG 293
>gi|395650532|ref|ZP_10438382.1| tRNA modification GTPase TrmE [Pseudomonas extremaustralis 14-3
substr. 14-3b]
Length = 456
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 162/333 (48%), Gaps = 66/333 (19%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ GV ++R+SGP ++++ + KPRYA +D + VLDEGL ++FP
Sbjct: 15 QGRGGVGIVRISGPLAGKVAEAISG----RELKPRYAHYGPFLD-ADKSVLDEGLAIYFP 69
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
PNSFTGED E Q HG V++ +L +L G R A PGEFS+RAF N+KLDL Q EA
Sbjct: 70 GPNSFTGEDVLELQGHGGPVVLDMLLQRCLQL-GCRLARPGEFSERAFLNDKLDLAQAEA 128
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DLI+A + + AL ++G + ++ VEA IDF E+EI
Sbjct: 129 IADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLISLRIYVEAAIDFPEEEI------- 181
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+ V A +D DE L+TV
Sbjct: 182 --------------------------------DFLADGHVLAMLDKVRDE------LSTV 203
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+ Q G +R G+ VI G PN GKSSL+N L ++ +IVT I
Sbjct: 204 LREAGQ---------------GALLRDGMTVVIAGRPNAGKSSLLNALAGREAAIVTEIA 248
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRD++ +H+ I G P+ ++DTAGLR T +
Sbjct: 249 GTTRDILREHIHIDGMPLHVVDTAGLRDTDDQV 281
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 25 AIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSK 84
A + TI A+++ G+ GV ++R+SGP ++++ + KPRYA +D K
Sbjct: 3 APRETIAAVATAQGRGGVGIVRISGPLAGKVAEAISG----RELKPRYAHYGPFLD-ADK 57
Query: 85 VVLDEGLCLWFP 96
VLDEGL ++FP
Sbjct: 58 SVLDEGLAIYFP 69
>gi|440233153|ref|YP_007346946.1| tRNA modification GTPase trmE [Serratia marcescens FGI94]
gi|440054858|gb|AGB84761.1| tRNA modification GTPase trmE [Serratia marcescens FGI94]
Length = 454
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 113/335 (33%), Positives = 167/335 (49%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + + K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISGKKAAEVAQVLLG----KLPKPRYADYLPFRD-ADGATLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRVLALPGVRIAQPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
RS + L G+ RI ++++ L VEA IDF ++EI + D
Sbjct: 141 ARSAMNSLQGAFSS----------RIHQLVEALTNLRIYVEAAIDFPDEEIDFLSDG--- 187
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+ +Q+ + G +++ + + G +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 188 KIEAQLNAVIGDLDQ-VRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 246
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 247 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG + + K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRISGKKAAEVAQVLLG----KLPKPRYADYLPFRD-ADGATL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVLALPGVRIAQPGEFSERAFLN 118
>gi|255723826|ref|XP_002546842.1| hypothetical protein CTRG_01147 [Candida tropicalis MYA-3404]
gi|240134733|gb|EER34287.1| hypothetical protein CTRG_01147 [Candida tropicalis MYA-3404]
Length = 488
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/351 (32%), Positives = 174/351 (49%), Gaps = 78/351 (22%)
Query: 99 GKCGVSVIRVSGPDT---LNALKSMACYPDQKVSKPRYASLRNIVDPVSE--VVLDEGLC 153
GK ++V+R+SGP N L P K R AS+R ++ ++ +LDE L
Sbjct: 24 GKSAIAVVRISGPQAKYIYNKLTRTTTPP-----KNRIASVRKLLSTETDKPSILDEALT 78
Query: 154 LWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG------LRPAEPGEFSKRAFFN 207
L+ P P ++TGED E +HG IA+I A++ ++ L +R A+ GEFS++AF N
Sbjct: 79 LYLPGPKTYTGEDLLELHLHGGIAIIKAVMNSIKTLHAPDQGIIIRQADRGEFSRQAFVN 138
Query: 208 NKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSE 267
+LDLT+ E + ++I +ETE QR L G + ++ +WRQ ILE +A++ IDF E
Sbjct: 139 GRLDLTELEGINEMINSETEQQRLANLSSSSGKTRLVFKQWRQDILEEIANLTTIIDFGE 198
Query: 268 DEIIE--DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSE 325
D ++ + ++N V + +L I K+
Sbjct: 199 DHDLDETETLINNVIVNIKKLEEQIRKY-------------------------------- 226
Query: 326 DEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFL 385
L VRS + L+ GIK ++G PN GKSS++N L
Sbjct: 227 --------LKKVRSSEILLN-------------------GIKLTLLGPPNAGKSSILNTL 259
Query: 386 CQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT-TTSDIIETEG 435
K +IV+ I GTTRD ++ +IGG+ V++ DTAG+R +DIIE EG
Sbjct: 260 VNKDAAIVSEIAGTTRDALDIPCEIGGFKVVIGDTAGIRMLEKADIIEREG 310
>gi|422021266|ref|ZP_16367779.1| tRNA modification GTPase TrmE [Providencia sneebia DSM 19967]
gi|414099735|gb|EKT61374.1| tRNA modification GTPase TrmE [Providencia sneebia DSM 19967]
Length = 454
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 121/336 (36%), Positives = 174/336 (51%), Gaps = 73/336 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG +++ K+ K RYA D V VLD+G+ ++FP
Sbjct: 15 GRGGVGILRVSGAKAALVAETVLG----KLPKARYADYLPFRD-VDGTVLDQGIAIFFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + + G+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLRRILTIEGIRIANPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLAS----VEAYIDFSEDEIIEDN 274
DLI A +E + A++ ++G S+ Q++ E+L + VEA IDF ++EI +
Sbjct: 130 ADLIDASSEQAARSAMNSLQGAFS---SQIHQMV-EALTTLRIYVEAAIDFPDEEI---D 182
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
L+ G IE + DE+I D L
Sbjct: 183 FLS---------DGKIEAKL-------------------------------DEVIAD--L 200
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
VRSQ Q G +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 201 AQVRSQAHQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVT 245
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 246 DIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
+ +TI A ++ G+ GV ++RVSG +++ K+PK RYA D V
Sbjct: 1 MQTNDTIVAQATPPGRGGVGILRVSGAKAALVAETVLG----KLPKARYADYLPFRD-VD 55
Query: 84 KVVLDEGLCLWFP 96
VLD+G+ ++FP
Sbjct: 56 GTVLDQGIAIFFP 68
>gi|254582943|ref|XP_002499203.1| ZYRO0E06446p [Zygosaccharomyces rouxii]
gi|238942777|emb|CAR30948.1| ZYRO0E06446p [Zygosaccharomyces rouxii]
Length = 506
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/344 (33%), Positives = 169/344 (49%), Gaps = 70/344 (20%)
Query: 100 KCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKP 159
K ++V+R+SG + + + + R LRN+ P + +LD+ L L+F P
Sbjct: 38 KSAIAVVRISGTHSKYVYHQLNNSEKKLIH--RRTLLRNLYGP-GKNLLDKALTLFFDSP 94
Query: 160 NSFTGEDCCEFQVHGSIAVINAILGALTKLPG------LRPAEPGEFSKRAFFNNKLDLT 213
S+TGED E +HG AV ++L A+ L +R A PGEF++RAF N K+DL
Sbjct: 95 KSYTGEDLLELHIHGGKAVTGSVLNAIGSLNDRNSGIEIRYALPGEFTQRAFQNGKIDLI 154
Query: 214 QTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIED 273
+ E + +LI AETE QR+ AL G K L+ WR D
Sbjct: 155 EVEGIRELIDAETETQRRCALSSFNGMNKNLFMLWR-----------------------D 191
Query: 274 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIED-- 331
I+N + A + A IDF ED IED
Sbjct: 192 KIVNNI-----------------------------------AQLTAIIDFGEDTEIEDTN 216
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
N+L V+ +VQL I + I+ K + ++SG+K V++G PN GKSSL+N + +S
Sbjct: 217 NLLQLVKHNMVQLKQEINQFIQKIEKTSI-LQSGVKVVLLGPPNAGKSSLINSISNDDVS 275
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I++ PGTTRD +E +D+ GY V + DTAG+R+ +SD IE G
Sbjct: 276 IISHTPGTTRDTVEASIDVNGYKVTISDTAGIRSHSSDEIELLG 319
>gi|88798543|ref|ZP_01114127.1| tRNA modification GTPase [Reinekea blandensis MED297]
gi|88778643|gb|EAR09834.1| tRNA modification GTPase [Reinekea sp. MED297]
Length = 455
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 120/328 (36%), Positives = 168/328 (51%), Gaps = 69/328 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG A ++A +K +PRYA P V+DEG+ L+FP
Sbjct: 16 GRGGVGIVRVSG----KAATAVAEKILKKRPEPRYAHYGPFYHPTQGDVIDEGIALFFPG 71
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG ++ +L A+ L G R A PGEFS+RAF N+K+DLTQ EA+
Sbjct: 72 PNSFTGEDVLELQGHGGPVILELLLEAVCSL-GCRLARPGEFSERAFLNDKIDLTQAEAI 130
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A + + A+ ++G DFS N ++
Sbjct: 131 ADLIDASSREAARSAVRSLQG------------------------DFS-------NAVHQ 159
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI--IEDNILNT 336
+ Q++QL RI VEA IDF E+EI + D + T
Sbjct: 160 LVEQLIQL----------------RI-----------YVEAAIDFPEEEIDFLSDGKVET 192
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
QV+ S ++ + G +R G+ VI G PN GKSSL+N L ++ +IVT I
Sbjct: 193 DLRQVM----SQLADVQATANQGSLMRDGMTVVIAGRPNAGKSSLLNALSGQERAIVTDI 248
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLR 424
GTTRDV+++H+ I G P+ ++DTAGLR
Sbjct: 249 AGTTRDVLKEHIHIDGMPLHIIDTAGLR 276
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
+A +TI A+++ G+ GV ++RVSG A ++A +K P+PRYA P
Sbjct: 2 IASNDTITAIATPPGRGGVGIVRVSG----KAATAVAEKILKKRPEPRYAHYGPFYHPTQ 57
Query: 84 KVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLNALKSMACYPDQKVSKPRYASLRNI 139
V+DEG+ L+FP + G V+ + GP L L C ++++P S R
Sbjct: 58 GDVIDEGIALFFPGPNSFTGEDVLELQGHGGPVILELLLEAVCSLGCRLARPGEFSERAF 117
Query: 140 VD 141
++
Sbjct: 118 LN 119
>gi|322698186|gb|EFY89958.1| GTPase family protein [Metarhizium acridum CQMa 102]
Length = 483
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 117/318 (36%), Positives = 161/318 (50%), Gaps = 75/318 (23%)
Query: 134 ASLRNIVDPVSEV---VLD-EGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL 189
A++R ++DP S +LD E L L+FP P + TGE+ E VHG A + A+L A+ K
Sbjct: 17 ATVRTLLDPASNTETNILDVEALLLYFPSPKTVTGEEVLELHVHGGPATVKAVLSAIPKC 76
Query: 190 PG---LRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYS 246
+R AEPGEF+KRAFFN +LDL Q E+LGD + AETE QR+ A+ G L + Y
Sbjct: 77 QTSTRVRYAEPGEFTKRAFFNGRLDLAQIESLGDTLDAETEQQRRAAVRGNSGALGRSYE 136
Query: 247 EWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRS 306
+W R ++Q G IE
Sbjct: 137 DW-------------------------------RHHLLQARGEIE--------------- 150
Query: 307 GIKSVICLASVEAYIDFSEDEIIEDN---ILNTVRSQVVQLHGSIEKHIELSNKCGVRIR 363
A IDFSED+ +++ +L V QV ++ SI+ H EL ++ +R
Sbjct: 151 ------------ALIDFSEDQHFDESQSELLGNVARQVAKILHSIDLH-ELGSQRSELLR 197
Query: 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGL 423
+GI+ +VG PN GKSSLMN + ++ SIV+ GTTRD++E LDI G+ DTAG
Sbjct: 198 NGIRIALVGPPNTGKSSLMNIIVGREASIVSGEAGTTRDIVEASLDIRGFLCSFADTAGF 257
Query: 424 R--TTTSD----IIETEG 435
R T TSD +E EG
Sbjct: 258 RSKTETSDEVIGAVEEEG 275
>gi|395235786|ref|ZP_10413989.1| tRNA modification GTPase TrmE [Enterobacter sp. Ag1]
gi|394729540|gb|EJF29514.1| tRNA modification GTPase TrmE [Enterobacter sp. Ag1]
Length = 454
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/335 (34%), Positives = 167/335 (49%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISGRQAREVAEAVLG----KLPKPRYADYLPFRD-ADGSALDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIANPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
RS + L G+ RI ++++ L VEA IDF ++EI + D
Sbjct: 141 ARSALNSLQGAFS----------ARINHLVEALTHLRIYVEAAIDFPDEEIDFLSDG--- 187
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+ +Q+ ++ G ++ + + G +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 188 KIEAQLHRVIGDLDA-VRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 246
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 247 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 94/228 (41%), Gaps = 28/228 (12%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D L
Sbjct: 5 DTIIAQATPPGRGGVGILRISGRQAREVAEAVLG----KLPKPRYADYLPFRD-ADGSAL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVDP 142
D+G+ LWFP + G V+ + GP L+ LK + P +++ P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIANPGEFSERAFLND 119
Query: 143 VSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSK 202
++ E + + A IN ++ ALT L
Sbjct: 120 KLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARINHLVEALTHL------------- 166
Query: 203 RAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQ 250
R + +D E I ++ + + LH++ G+L + +E RQ
Sbjct: 167 RIYVEAAIDFPDEE-----IDFLSDGKIEAQLHRVIGDLDAVRAEARQ 209
>gi|238753998|ref|ZP_04615357.1| tRNA modification GTPase mnmE [Yersinia ruckeri ATCC 29473]
gi|238707750|gb|EEQ00109.1| tRNA modification GTPase mnmE [Yersinia ruckeri ATCC 29473]
Length = 454
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 167/349 (47%), Gaps = 69/349 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG +++ K+ KPRYA D LD+G+ L+FP
Sbjct: 15 GRGGVGILRVSGRAVAAVAQAVLG----KLPKPRYADYLPFRD-TDGTTLDQGIVLYFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E
Sbjct: 130 ADLIDASSE-------------------------------------------------QA 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS V L G+ I + +R +++ I E IDF D IE LN V
Sbjct: 141 ARSAVNSLQGAFSIRIHQLVEALTHLRIYVEAAIDFPDEE--IDFLSDGKIEGQ-LNGVM 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S + + + + G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 198 SDLAK--------VRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI----IETEGNLLEKNNQ 443
TTRDV+ +H+ I G P+ ++DTAGLR + ++ IE N +E+ ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADR 298
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
++ +TI A ++ G+ GV ++RVSG +++ K+PKPRYA D
Sbjct: 1 MSATDTIVAQATPPGRGGVGILRVSGRAVAAVAQAVLG----KLPKPRYADYLPFRD-TD 55
Query: 84 KVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRN 138
LD+G+ L+FP + G V+ + GP L+ LK + P ++++P S R
Sbjct: 56 GTTLDQGIVLYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERA 115
Query: 139 IVD 141
++
Sbjct: 116 FLN 118
>gi|410594432|ref|YP_006951159.1| tRNA modification GTPase MnmE [Streptococcus agalactiae SA20-06]
gi|421532049|ref|ZP_15978422.1| tRNA modification GTPase TrmE [Streptococcus agalactiae STIR-CD-17]
gi|403642772|gb|EJZ03589.1| tRNA modification GTPase TrmE [Streptococcus agalactiae STIR-CD-17]
gi|410518071|gb|AFV72215.1| tRNA modification GTPase MnmE [Streptococcus agalactiae SA20-06]
Length = 458
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 115/337 (34%), Positives = 169/337 (50%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D L + D + + +IVDP +LDE +
Sbjct: 18 GEGAIGIVRISGTDALKIASKIYRGKDLSAIQSHTLNYGHIVDPDKNEILDEVMLGVMLA 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL + + G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 78 PKTFTREDVIEINTHGGIAVTNEILQLILR-HGARMAEPGEFTKRAFLNGRVDLTQAEAV 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI+A+T+ A+ Q+ G+LK L + RQ ILNT
Sbjct: 137 MDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQ-----------------------EILNT 173
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ + +R
Sbjct: 174 -----------------------------------LAQVEVNIDYPEYDDVEEMTITLMR 198
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + +E + + + G +R G+ + I+G PNVGKSSL+N L +++ +IVT I G
Sbjct: 199 EKTQEFQALMENLLRTARR-GKILREGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEG 257
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 258 TTRDVIEEYVNIKGVPLKLVDTAGIR-DTDDIVEKIG 293
>gi|445415858|ref|ZP_21434289.1| tRNA modification GTPase TrmE [Acinetobacter sp. WC-743]
gi|444762658|gb|ELW87015.1| tRNA modification GTPase TrmE [Acinetobacter sp. WC-743]
Length = 454
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 121/343 (35%), Positives = 171/343 (49%), Gaps = 78/343 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV VIR+SGP + +++ + + K R+A R D EV LDEGL + FP
Sbjct: 18 GRGGVGVIRLSGPKAYSIAQALT---QKDLPKARFAGFRQFFDHQGEV-LDEGLAICFPN 73
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG + NA+L L +L G A+ GEFS RAF N K+DL Q EA+
Sbjct: 74 PNSFTGEDVVELQGHGGPVIQNALLTRLLEL-GATAAKAGEFSMRAFENGKMDLVQAEAI 132
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A ++ + A+ ++G + N +NT
Sbjct: 133 ADLIDATSQAAARSAVRSLQG-------------------------------VFSNKVNT 161
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI--IED----N 332
V +++ H+ L VEA IDF E+EI + D +
Sbjct: 162 VLEKLI--------HLRLH-------------------VEAAIDFPEEEIDFLADGKILS 194
Query: 333 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
+L V++ V ++ S + G +R G++ VI G+PN GKSSL+N L +I
Sbjct: 195 LLEEVQTSVAA--------VQQSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGNDRAI 246
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
VT I GTTRDV+ + + + G P+ L DTAGLR T D++E EG
Sbjct: 247 VTDIAGTTRDVLHEKISLNGLPITLTDTAGLR-ETGDVVEKEG 288
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 24/139 (17%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
+ TI A+++ G+ GV VIR+SGP + +++ + +PK R+A R D + V
Sbjct: 7 QTTIAAIATPPGRGGVGVIRLSGPKAYSIAQALT---QKDLPKARFAGFRQFFDHQGE-V 62
Query: 87 LDEGLCLWFPR-HGKCGVSVIRV---SGPDTLNALK----------------SMACYPDQ 126
LDEGL + FP + G V+ + GP NAL SM + +
Sbjct: 63 LDEGLAICFPNPNSFTGEDVVELQGHGGPVIQNALLTRLLELGATAAKAGEFSMRAFENG 122
Query: 127 KVSKPRYASLRNIVDPVSE 145
K+ + ++ +++D S+
Sbjct: 123 KMDLVQAEAIADLIDATSQ 141
>gi|395767579|ref|ZP_10448112.1| tRNA modification GTPase mnmE [Bartonella doshiae NCTC 12862]
gi|395413942|gb|EJF80395.1| tRNA modification GTPase mnmE [Bartonella doshiae NCTC 12862]
Length = 435
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/329 (34%), Positives = 158/329 (48%), Gaps = 64/329 (19%)
Query: 102 GVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNS 161
GV+VIR+SGP +N +K++ Y + K R+ N+ LD L ++FP P+S
Sbjct: 15 GVAVIRLSGPHVVNVVKTLCGY----LPKARFMHYGNLT-ARDGSFLDSALTVFFPAPHS 69
Query: 162 FTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDL 221
FTGEDC EF +HG AV+N L L+ G R AE GEFS+RAF KLDL Q E L DL
Sbjct: 70 FTGEDCAEFHLHGGKAVVNRFLDELSTFTGCRIAEAGEFSRRAFIEGKLDLVQAEGLADL 129
Query: 222 IQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRS 281
I+AETE QR+ A+ G L LY +WR ++++ A +EA +DFS++ I ++I + V
Sbjct: 130 IEAETESQRRLAVMSTSGRLTTLYRDWRHKLIKARAFIEAELDFSDEADIPNSISDEVWK 189
Query: 282 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQV 341
+ + S+ HI + + +R G+K VI A
Sbjct: 190 DMEEFCTSLRNHIAEGERASI-LRDGLKIVIAGAPNSG---------------------- 226
Query: 342 VQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTR 401
+S I + + G P ++IVT GTTR
Sbjct: 227 ---------------------KSSIMNRLAGRP---------------VAIVTEEAGTTR 250
Query: 402 DVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
D +E L G PV + DTAG R T + I
Sbjct: 251 DALEMRLVFCGLPVFVTDTAGFRETENKI 279
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFA+SSG GV+VIR+SGP +N +K++ Y +PK R+ N+ L
Sbjct: 2 DTIFAISSGLLPSGVAVIRLSGPHVVNVVKTLCGY----LPKARFMHYGNLT-ARDGSFL 56
Query: 88 DEGLCLWFP 96
D L ++FP
Sbjct: 57 DSALTVFFP 65
>gi|349686317|ref|ZP_08897459.1| tRNA modification GTPase TrmE [Gluconacetobacter oboediens 174Bp2]
Length = 464
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 115/341 (33%), Positives = 173/341 (50%), Gaps = 74/341 (21%)
Query: 100 KCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIV--DPVSEVVLDEGLCLWFP 157
+ ++V+R+SGP T ++S+ C ++ PR ASLR + D + V+LD L LWFP
Sbjct: 49 RAAIAVMRLSGPGTGRIVESL-C---GRLPAPRRASLRGLWRRDGDAPVLLDRALVLWFP 104
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P+S+TGED E +H AVI+A+ L + G RPAEPGEFS+RAF + +LDL Q E
Sbjct: 105 GPDSYTGEDSAELHLHAGPAVISAVADTLVAM-GARPAEPGEFSRRAFTHGRLDLMQAEG 163
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEI---IEDN 274
+ DLI AETE QR++AL Q+ G +LY EW + LA EA IDF ++E+ +E
Sbjct: 164 IADLIDAETEAQRRQALAQVDGAQSRLYQEWADRLRVLLAHQEALIDFPDEELPPEVEQE 223
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
++N +++ LH +++ ++ + + R+R G+ I E + + ++L
Sbjct: 224 LVNGLQA----LHATMQDYLA-TGEGAARLRRGLVFAIV----------GEPNVGKSSLL 268
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
N + + +IV+
Sbjct: 269 NAL------------------------------------------------AGRDAAIVS 280
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
+ GTTRD IE + +G PV L+DTAGLR T D IE EG
Sbjct: 281 TRAGTTRDAIEIRVVMGDVPVTLVDTAGLR-ETDDEIEAEG 320
>gi|190171248|gb|ACE63694.1| ThdF [Escherichia vulneris]
Length = 439
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 114/334 (34%), Positives = 164/334 (49%), Gaps = 69/334 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISG----HKAREVAQAVLGKLPKPRYADYLPFND-ADGTALDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 122 ADL-----------------------------------------IDASSEQ--------A 132
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS + L G+ + + +R VEA IDF ++EI + L+ +
Sbjct: 133 ARSALNSLQGAFSARVNHLVEALTHLR---------IYVEAAIDFPDEEI---DFLSDGK 180
Query: 339 SQVVQLHGSIEK--HIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+ QL+G + + + G +R G+K VI G PN GKSSL+N L ++ +IVT I
Sbjct: 181 IEA-QLNGVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDI 239
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 240 AGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 273
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++R+SG + + +A K+PKPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISG----HKAREVAQAVLGKLPKPRYADYLPFND-ADGTALDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 110
>gi|271502718|ref|YP_003335744.1| tRNA modification GTPase TrmE [Dickeya dadantii Ech586]
gi|270346273|gb|ACZ79038.1| tRNA modification GTPase TrmE [Dickeya dadantii Ech586]
Length = 454
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 115/334 (34%), Positives = 163/334 (48%), Gaps = 69/334 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D V VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISGRQASAVAQAVLG----KLPKPRYADYLPFHD-VDGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRVVALPGVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI--IEDNILNT 336
RS V L G + + +R VEA IDF ++EI + D +
Sbjct: 141 ARSAVNSLQGVFSSRVHQLVEALTHLR---------IYVEAAIDFPDEEIDFLSDGKIEA 191
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+ + V+ G +E + + G +R G+K VI G PN GKSSL+N L + +IVT I
Sbjct: 192 MLNAVI---GDLEG-VRGEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTDI 247
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 248 AGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D V VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGRQASAVAQAVLG----KLPKPRYADYLPFHD-VDGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVVALPGVRIARPGEFSERAFLN 118
>gi|410665010|ref|YP_006917381.1| tRNA modification GTPase TrmE [Simiduia agarivorans SA1 = DSM
21679]
gi|409027367|gb|AFU99651.1| tRNA modification GTPase TrmE [Simiduia agarivorans SA1 = DSM
21679]
Length = 452
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 114/326 (34%), Positives = 159/326 (48%), Gaps = 66/326 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP +L +++ + PR A +D LD+G+ L+F
Sbjct: 16 GRGGVGIIRVSGPASLAIAEAITG----RTPTPRQAHYLPFIDDEGRT-LDQGIALFFKS 70
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L L G R A PGEFS+RAF N+KLDLTQ EA+
Sbjct: 71 PNSFTGEDILELQGHGGPIVMDWLLRRCLNL-GARLARPGEFSERAFLNDKLDLTQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A+T+ + AL+ ++G Q + + + VEA IDF E+EI
Sbjct: 130 ADLIDADTDQAARNALNSLQGAFSQRVEALQHALTQLRIYVEAAIDFPEEEI-------- 181
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
DF D +E + L +
Sbjct: 182 -------------------------------------------DFLSDGRVETD-LQAIL 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S + Q++ + GV R G+ VI G PN GKSSL+N L + +IVT I G
Sbjct: 198 SHLSQVYAEARQ--------GVLTREGMTVVIAGRPNAGKSSLLNALAGRDTAIVTDIEG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLR 424
TTRD++ +H+ I G P+ ++DTAGLR
Sbjct: 250 TTRDILREHIQIDGLPLHIIDTAGLR 275
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
K+TI A+++ G+ GV +IRVSGP +L +++ + P PR A +D +
Sbjct: 5 KDTIAAIATPTGRGGVGIIRVSGPASLAIAEAITG----RTPTPRQAHYLPFIDDEGR-T 59
Query: 87 LDEGLCLWF 95
LD+G+ L+F
Sbjct: 60 LDQGIALFF 68
>gi|392331590|ref|ZP_10276205.1| tRNA modification GTPase TrmE [Streptococcus canis FSL Z3-227]
gi|391419269|gb|EIQ82081.1| tRNA modification GTPase TrmE [Streptococcus canis FSL Z3-227]
Length = 458
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 115/337 (34%), Positives = 171/337 (50%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG + L KS+ D + + +IVDP +E ++DE +
Sbjct: 18 GEGAIGIVRLSGTEALTIAKSVFKGKDLEKVTSHTINYGHIVDPKTEAIVDEVMVSVMLA 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT E+ E HG IAV N IL L + G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 78 PKTFTRENVVEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTKRAFLNGRVDLTQAEAV 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L QL + RQ ILNT
Sbjct: 137 MDIIRAKTDKAMTIAVKQLDGSLSQLINSTRQ-----------------------EILNT 173
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ +R
Sbjct: 174 -----------------------------------LAQVEVNIDYPEYDDVEEMTTALLR 198
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + +E + + K G +R G+ + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 199 EKTQEFQNLLENLLR-TAKRGKILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 257
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 258 TTRDVIEEYVNIKGVPLKLVDTAGIR-ETDDLVEQIG 293
>gi|374334217|ref|YP_005090904.1| tRNA modification GTPase TrmE [Oceanimonas sp. GK1]
gi|372983904|gb|AEY00154.1| tRNA modification GTPase TrmE [Oceanimonas sp. GK1]
Length = 453
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 121/339 (35%), Positives = 175/339 (51%), Gaps = 70/339 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP +++A +V + RYA D VLD+G+ L F
Sbjct: 14 GRGGVGIIRVSGPQA----EAVAQAVLGRVPQVRYADYLPFKDEQG-TVLDQGIALLFKG 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ ++ + LPGLRPA GEFS+RAF N+KLDL Q EA+
Sbjct: 69 PHSFTGEDVLELQGHGGPVVLDMLVRRILALPGLRPARAGEFSERAFLNDKLDLAQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI+A +E + AL ++G +FS
Sbjct: 129 ADLIEASSEQAARSALQSLQG------------------------EFS------------ 152
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
++HG +E L RI VEA IDF ++E+ + L+ +
Sbjct: 153 -----TRVHGLVEALTHL------RI-----------YVEAAIDFPDEEV---DFLSDGK 187
Query: 339 SQVVQLHGSIEKHIELSNKC--GVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+L+G +++ E+ + G +R G+K VI G PN GKSSL+N L K+ +IVT I
Sbjct: 188 I-AGELYGIMDRLTEVQREARQGAIMREGMKVVIAGRPNAGKSSLLNALAGKESAIVTDI 246
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+ +++ + G P+ ++DTAGLR SD +E G
Sbjct: 247 AGTTRDVLREYIHLDGMPLHIIDTAGLR-EASDAVERIG 284
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP +++A +VP+ RYA D VL
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPQA----EAVAQAVLGRVPQVRYADYLPFKDE-QGTVL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L F H G V+ + G
Sbjct: 59 DQGIALLFKGPHSFTGEDVLELQG 82
>gi|395495778|ref|ZP_10427357.1| tRNA modification GTPase TrmE [Pseudomonas sp. PAMC 25886]
Length = 456
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 161/333 (48%), Gaps = 66/333 (19%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ GV ++R+SGP L + + A + KPRYA + E VLDEG+ L+FP
Sbjct: 15 QGRGGVGIVRISGP--LAGVAAQAVI--GRELKPRYAHYGPFLG-ADEEVLDEGIALYFP 69
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
PNSFTGED E Q HG V++ +L +L G R A PGEFS+RAF N+KLDL Q EA
Sbjct: 70 GPNSFTGEDVLELQGHGGPIVLDMLLQRCLQL-GCRLARPGEFSERAFLNDKLDLAQAEA 128
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DLI+A + + AL ++G + ++ VEA IDF E+EI
Sbjct: 129 IADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLISLRIYVEAAIDFPEEEI------- 181
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+ V A +D DE L+TV
Sbjct: 182 --------------------------------DFLADGHVLAMLDRVRDE------LSTV 203
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+ Q G +R G+ VI G PN GKSSL+N L ++ +IVT I
Sbjct: 204 LREAGQ---------------GALLRDGMTVVIAGRPNAGKSSLLNALAGREAAIVTEIA 248
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRD++ +H+ I G P+ ++DTAGLR T +
Sbjct: 249 GTTRDILREHIHIDGMPLHVVDTAGLRDTDDQV 281
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 25 AIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSK 84
A + TI A+++ G+ GV ++R+SGP L + + A + KPRYA + +
Sbjct: 3 APRETIAAVATAQGRGGVGIVRISGP--LAGVAAQAVIGREL--KPRYAHYGPFLG-ADE 57
Query: 85 VVLDEGLCLWFP 96
VLDEG+ L+FP
Sbjct: 58 EVLDEGIALYFP 69
>gi|359438259|ref|ZP_09228295.1| tRNA modification GTPase MnmE [Pseudoalteromonas sp. BSi20311]
gi|358027098|dbj|GAA64544.1| tRNA modification GTPase MnmE [Pseudoalteromonas sp. BSi20311]
Length = 454
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 119/328 (36%), Positives = 170/328 (51%), Gaps = 65/328 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSG N K +A KV K RYA + ++ LD+G+ ++F
Sbjct: 15 GRGGVGIIRVSG----NLAKQVAEKIIGKVPKVRYADYVPF-NTLAGQQLDQGIAIYFAG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ +L ++K+ G+R A+PGEFS+RAF N+KLDLTQ EA+
Sbjct: 70 PHSFTGEDVLELQGHGGPVVLDMLLKEISKIDGVRLAKPGEFSERAFMNDKLDLTQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G + + ++ VEA IDF ++EI + L+
Sbjct: 130 ADLINATSEQAAKSALQSLQGQFSKHIETLVEKVIHLRMYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
K G + + IIE LN V
Sbjct: 186 ------------------DGKVGGDLNT---------------------IIEQ--LNAVT 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+Q Q GSI +R G++ VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 NQAKQ--GSI-------------MREGMRVVIAGRPNAGKSSLLNALAGREAAIVTEIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTT 426
TTRDV+ +H+ I G P+ ++DTAGLR +
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRES 277
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSG N K +A KVPK RYA + ++ L
Sbjct: 5 DTIAAQATAPGRGGVGIIRVSG----NLAKQVAEKIIGKVPKVRYADYVPF-NTLAGQQL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLNA-LKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ ++F H G V+ + GP L+ LK ++ +++KP S R ++
Sbjct: 60 DQGIAIYFAGPHSFTGEDVLELQGHGGPVVLDMLLKEISKIDGVRLAKPGEFSERAFMN 118
>gi|49476318|ref|YP_034359.1| tRNA modification GTPase TrmE [Bartonella henselae str. Houston-1]
gi|81647466|sp|Q6G1K8.1|MNME_BARHE RecName: Full=tRNA modification GTPase MnmE
gi|49239126|emb|CAF28430.1| Thiophene and furan oxidizer [Bartonella henselae str. Houston-1]
Length = 435
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 159/330 (48%), Gaps = 66/330 (20%)
Query: 102 GVSVIRVSGPDTLNALKSM-ACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+VIR+SG ++ + ++ C P K R+ N+ LD L ++FP P+
Sbjct: 15 GVAVIRLSGSHVVHVVTTLCGCLP-----KARFMHYGNLT-ARDGSFLDSALTVFFPAPH 68
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDC EF +HG AV+N L L+ G R AEPGEFS+RAF KLDL Q E L D
Sbjct: 69 SFTGEDCAEFHLHGGKAVVNRFLDELSTFKGCRIAEPGEFSRRAFMEGKLDLVQAEGLAD 128
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI+AETE QR+ A+ G L LY +WR +++ A +EA +DFS++ I + + + V
Sbjct: 129 LIEAETESQRRLAVMGTSGRLTTLYRDWRHKLMKIRAFIEAELDFSDEADIPNTVSDKVW 188
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
V L S+ +HI + + +R G K VI A
Sbjct: 189 KDVENLCISLREHIAEGERASI-LRDGFKIVIVGAPNSG--------------------- 226
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
+S I + + G+P ++IVT GTT
Sbjct: 227 ----------------------KSSIMNRLAGKP---------------VAIVTEEAGTT 249
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
RD +E L +GG PV L+DTAG R T + I
Sbjct: 250 RDALEVRLVLGGLPVFLIDTAGFRETDNKI 279
>gi|414564203|ref|YP_006043164.1| tRNA modification GTPase TrmE [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
gi|338847268|gb|AEJ25480.1| tRNA modification GTPase TrmE [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
Length = 458
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 169/337 (50%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG L+ KS+ D + +I+ P + V+DE +
Sbjct: 18 GEGAIGIVRLSGTKALDIAKSIFKGKDLTTVASHTLNYGHIIRPSTGEVIDEVMVSVMLA 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L K G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 78 PKTFTREDVIEINTHGGIAVTNDILQLLIK-QGARMAEPGEFTKRAFLNGRIDLTQAEAV 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI+A+T+ A+ Q+ G+L QL + RQ ILNT
Sbjct: 137 MDLIRAKTDKAMSIAIKQLDGSLSQLITNTRQ-----------------------EILNT 173
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ +R
Sbjct: 174 -----------------------------------LAQVEVNIDYPEYDDVEEMTTALLR 198
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + +E+ + + K G +R G+ + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 199 DKTQEFQALLEQLLR-TAKRGKILREGLSTAIIGRPNVGKSSLLNTLLREDKAIVTDIAG 257
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 258 TTRDVIEEYVNIKGIPLKLVDTAGIR-ETDDLVEQIG 293
>gi|403051565|ref|ZP_10906049.1| tRNA modification GTPase TrmE [Acinetobacter bereziniae LMG 1003]
Length = 454
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 123/340 (36%), Positives = 171/340 (50%), Gaps = 72/340 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQK-VSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ GV VIR+SGP S+A QK + K R+A R D EV LDEGL + FP
Sbjct: 18 GRGGVGVIRLSGPKAY----SIAQVLTQKDLPKARFAGFRQFFDDQGEV-LDEGLAICFP 72
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
PNSFTGED E Q HG + NA+L L +L G A+ GEFS RAF N K+DL Q EA
Sbjct: 73 NPNSFTGEDVVELQGHGGPVIQNALLTRLLEL-GATAAKAGEFSMRAFENGKMDLVQAEA 131
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DLI A ++ + A+ ++G + N +N
Sbjct: 132 IADLIDATSQAAARSAVRSLQG-------------------------------VFSNKVN 160
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI--IEDNILN 335
TV +++ H+ L VEA IDF E+EI + D +
Sbjct: 161 TVLEKLI--------HLRLH-------------------VEAAIDFPEEEIDFLADGKIL 193
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
++ +V ++++ S + G +R G++ VI G+PN GKSSL+N L +IVT
Sbjct: 194 SLLEEVQTSVAAVQQ----SARQGQLLREGLQVVIAGKPNAGKSSLLNALAGNDRAIVTD 249
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I GTTRDV+ + + + G P+ L DTAGLR T D++E EG
Sbjct: 250 IAGTTRDVLHEKISLNGLPITLTDTAGLR-ETGDVVEKEG 288
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 26/140 (18%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQK-VPKPRYASLRNIVDPVSKV 85
+ TI A+++ G+ GV VIR+SGP S+A QK +PK R+A R D +
Sbjct: 7 QTTIAAIATPPGRGGVGVIRLSGPKAY----SIAQVLTQKDLPKARFAGFRQFFDDQGE- 61
Query: 86 VLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLNALK----------------SMACYPD 125
VLDEGL + FP + G V+ + GP NAL SM + +
Sbjct: 62 VLDEGLAICFPNPNSFTGEDVVELQGHGGPVIQNALLTRLLELGATAAKAGEFSMRAFEN 121
Query: 126 QKVSKPRYASLRNIVDPVSE 145
K+ + ++ +++D S+
Sbjct: 122 GKMDLVQAEAIADLIDATSQ 141
>gi|359446391|ref|ZP_09236068.1| tRNA modification GTPase MnmE [Pseudoalteromonas sp. BSi20439]
gi|358039730|dbj|GAA72317.1| tRNA modification GTPase MnmE [Pseudoalteromonas sp. BSi20439]
Length = 454
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 121/328 (36%), Positives = 171/328 (52%), Gaps = 65/328 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSG TL K +A KV K RYA + ++ LD+G+ ++F
Sbjct: 15 GRGGVGIIRVSG--TL--AKQVAEKIIGKVPKVRYADYVPF-NTLAGQQLDQGIAIYFAG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L ++K+ G+R A+PGEFS+RAF N+KLDLTQ EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVVLDMLLKEISKIDGVRLAKPGEFSERAFMNDKLDLTQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G + + ++ VEA IDF ++EI + L+
Sbjct: 130 ADLINATSEQAAKSALQSLQGQFSKHIETLVEKVIHLRMYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
K G + + IIE LN V
Sbjct: 186 ------------------DGKVGGDLNA---------------------IIEQ--LNAVT 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+Q Q GSI +R G++ VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 NQAKQ--GSI-------------MREGMRVVIAGRPNAGKSSLLNALAGREAAIVTEIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTT 426
TTRDV+ +H+ I G P+ ++DTAGLR +
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRES 277
>gi|392557204|ref|ZP_10304341.1| tRNA modification GTPase TrmE [Pseudoalteromonas undina NCIMB 2128]
Length = 454
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 119/328 (36%), Positives = 170/328 (51%), Gaps = 65/328 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSG N K +A KV K RYA + ++ LD+G+ ++F
Sbjct: 15 GRGGVGIIRVSG----NLAKQVAEKIIGKVPKVRYADYVPF-NTLAGQQLDQGIAIYFAG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ +L ++K+ G+R A+PGEFS+RAF N+KLDLTQ EA+
Sbjct: 70 PHSFTGEDVLELQGHGGPVVLDMLLKEISKIDGVRLAKPGEFSERAFMNDKLDLTQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G + + ++ VEA IDF ++EI + L+
Sbjct: 130 ADLINATSEQAAKSALQSLQGQFSKHIETLVEKVIHLRMYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
K G + + IIE LN V
Sbjct: 186 ------------------DGKVGGDLNA---------------------IIEQ--LNAVT 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+Q Q GSI +R G++ VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 NQAKQ--GSI-------------MREGMRVVIAGRPNAGKSSLLNALAGREAAIVTEIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTT 426
TTRDV+ +H+ I G P+ ++DTAGLR +
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRES 277
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSG N K +A KVPK RYA + ++ L
Sbjct: 5 DTIAAQATAPGRGGVGIIRVSG----NLAKQVAEKIIGKVPKVRYADYVPF-NTLAGQQL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLNA-LKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ ++F H G V+ + GP L+ LK ++ +++KP S R ++
Sbjct: 60 DQGIAIYFAGPHSFTGEDVLELQGHGGPVVLDMLLKEISKIDGVRLAKPGEFSERAFMN 118
>gi|417841468|ref|ZP_12487572.1| tRNA modification GTPase mnmE [Haemophilus haemolyticus M19501]
gi|341949506|gb|EGT76110.1| tRNA modification GTPase mnmE [Haemophilus haemolyticus M19501]
Length = 452
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 165/332 (49%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++RVSGP +++ K KPR A D VLD+G+ L+F
Sbjct: 13 GRGGIGILRVSGPLATEVAQAVLG----KCPKPRMADYLPFKD-ADGTVLDQGIALYFKS 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L + ++ G+R A PGEFS++AF N+KLDL Q EA+
Sbjct: 68 PNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLDLAQAEAI 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL K L E+ + V +DF
Sbjct: 128 ADLIDATSEQAARSAL-------KSLQGEFSK-------KVNELVDF------------- 160
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
V+ L +E I+ ++ IDF D IE N+ R
Sbjct: 161 ----VIYLRTYVEASIDFPDE--------------------EIDFLADGKIEANL----R 192
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ QL K + K G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 193 GIINQL-----KDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 247
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR T ++
Sbjct: 248 TTRDVLREHIHIDGMPLHIIDTAGLRDATDEV 279
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP +++ K PKPR A D
Sbjct: 1 MKETIVAQATAPGRGGIGILRVSGPLATEVAQAVLG----KCPKPRMADYLPFKD-ADGT 55
Query: 86 VLDEGLCLWF 95
VLD+G+ L+F
Sbjct: 56 VLDQGIALYF 65
>gi|423068243|ref|ZP_17057031.1| tRNA modification GTPase mnmE [Streptococcus intermedius F0395]
gi|355367134|gb|EHG14847.1| tRNA modification GTPase mnmE [Streptococcus intermedius F0395]
Length = 457
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 118/337 (35%), Positives = 171/337 (50%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG ++ + + D + +IVDP + +LDE +
Sbjct: 17 GEGAIGIVRLSGTESFAIAQKIFKGKDLSTVASHTLNYGHIVDPAKDEILDEVMIGAMRS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL + + G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDVIEINTHGGIAVTNEILQLVIR-EGARIAEPGEFTKRAFLNGRVDLTQAEAI 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ IL +LA VE ID+ E + +E
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTLAQVEVNIDYPEYDDVE------ 189
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
E++ K ++C E DF E + +L T R
Sbjct: 190 ----------------EMTTK-----------LLC----EKTADFEE---LLTQLLKTAR 215
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
G +R GI + I+G PNVGKSSL+N L + +IVT I G
Sbjct: 216 R-------------------GKILREGISTAIIGRPNVGKSSLLNNLLCEDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-DTDDIVEQIG 292
>gi|254560700|ref|YP_003067795.1| tRNA modification GTPase trmE [Methylobacterium extorquens DM4]
gi|254267978|emb|CAX23846.1| tRNA modification GTPase trmE [Methylobacterium extorquens DM4]
Length = 444
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 120/352 (34%), Positives = 167/352 (47%), Gaps = 76/352 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ V+V+R+SGP AL +A +PR SLR + DP S +LD+ L W P
Sbjct: 20 GRAAVTVVRISGPAAGLALDRLAG----GRPEPRRLSLRRLRDPDSRDILDQALVAWLPG 75
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P + TGED E +HG +AV +A+L AL +PG RPAE G FS+RAF N +
Sbjct: 76 PATATGEDMAELHLHGGLAVRSAVLRALAGVPGCRPAEAGAFSRRAFLNGR--------- 126
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
ID +E E I D I
Sbjct: 127 --------------------------------------------IDLTEAEGIADLIDAE 142
Query: 279 VRSQVVQ----LHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFS-EDEIIEDNI 333
+Q VQ L G++ + + + G+ + LA EA +DF+ E ++ ED +
Sbjct: 143 TEAQRVQALRQLDGALGRQVAAWRETGIDL---------LAGAEAALDFADEGDVDEDGL 193
Query: 334 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIV 393
+ + L +I + + G R+R G V+ G PN GKS+L+N L + +IV
Sbjct: 194 DAALSGRATALRDAIRAALA-DGRRGERLREGFCVVLAGAPNAGKSTLLNALSGRDAAIV 252
Query: 394 TSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKNNQQR 445
+ IPGTTRD IE D+GG PV+L+DTAGLR T+D IE EG K Q R
Sbjct: 253 SDIPGTTRDAIEVRCDLGGLPVVLVDTAGLR-ETADAIEAEGV---KRTQSR 300
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 135/289 (46%), Gaps = 67/289 (23%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFA +SG G+ V+V+R+SGP AL +A P+PR SLR + DP S+ +L
Sbjct: 10 DTIFAPASGFGRAAVTVVRISGPAAGLALDRLAG----GRPEPRRLSLRRLRDPDSRDIL 65
Query: 88 DEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVV 147
D+ L W P GP T + ++E+
Sbjct: 66 DQALVAWLP-------------GPATATG------------------------EDMAELH 88
Query: 148 LDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFN 207
L GL + AV+ A+ G +PG RPAE G FS+RAF N
Sbjct: 89 LHGGLAV--------------------RSAVLRALAG----VPGCRPAEAGAFSRRAFLN 124
Query: 208 NKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFS- 266
++DLT+ E + DLI AETE QR +AL Q+ G L + + WR+ ++ LA EA +DF+
Sbjct: 125 GRIDLTEAEGIADLIDAETEAQRVQALRQLDGALGRQVAAWRETGIDLLAGAEAALDFAD 184
Query: 267 EDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA 315
E ++ ED + + + L +I + + G R+R G V+ A
Sbjct: 185 EGDVDEDGLDAALSGRATALRDAIRAALA-DGRRGERLREGFCVVLAGA 232
>gi|225868377|ref|YP_002744325.1| tRNA modification GTPase TrmE [Streptococcus equi subsp.
zooepidemicus]
gi|225701653|emb|CAW98957.1| tRNA modification GTPase TrmE [Streptococcus equi subsp.
zooepidemicus]
Length = 458
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 169/337 (50%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG L+ KS+ D + +I+ P + V+DE +
Sbjct: 18 GEGAIGIVRLSGTKALDIAKSIFKGKDLTTVASHTLNYGHIIRPSTGEVIDEVMVSVMLA 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L K G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 78 PKTFTREDVIEINTHGGIAVTNDILQLLIK-QGARMAEPGEFTKRAFLNGRIDLTQAEAV 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI+A+T+ A+ Q+ G+L QL + RQ ILNT
Sbjct: 137 MDLIRAKTDKAMSIAIKQLDGSLSQLITNTRQ-----------------------EILNT 173
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ +R
Sbjct: 174 -----------------------------------LAQVEVNIDYPEYDDVEEMTTALLR 198
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + +E+ + + K G +R G+ + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 199 DKTQEFQALLEQLLR-TAKRGKILREGLSTAIIGRPNVGKSSLLNTLLREDKAIVTDIAG 257
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 258 TTRDVIEEYVNIKGIPLKLVDTAGIR-ETDDLVEQIG 293
>gi|357637846|ref|ZP_09135719.1| tRNA modification GTPase TrmE [Streptococcus urinalis 2285-97]
gi|418416637|ref|ZP_12989836.1| tRNA modification GTPase mnmE [Streptococcus urinalis FB127-CNA-2]
gi|357586300|gb|EHJ55708.1| tRNA modification GTPase TrmE [Streptococcus urinalis 2285-97]
gi|410874455|gb|EKS22386.1| tRNA modification GTPase mnmE [Streptococcus urinalis FB127-CNA-2]
Length = 458
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 173/337 (51%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG + L+ + + + K + +++DP + +LDE +
Sbjct: 18 GEGAIGIVRLSGTNALDIAQRVFKGKNLKTVDSHTINYGHVIDPKTNEILDEVMVTVMLA 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L K G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 78 PKTFTREDVIEINTHGGIAVTNEILQLLIK-NGARMAEPGEFTKRAFLNGRVDLTQAEAI 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L QL ++ RQ ILNT
Sbjct: 137 MDIIRAKTDKAMNVAVKQLDGSLYQLINDTRQ-----------------------EILNT 173
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ ++
Sbjct: 174 -----------------------------------LAQVEVNIDYPEYDDVEEMTTQLLK 198
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ +E ++ + K G +R G+ + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 199 EKTLEFQNLLENLLKTA-KRGKILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIEG 257
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 258 TTRDVIEEYVNIKGVPLKLVDTAGIR-DTDDLVEKIG 293
>gi|386266263|ref|YP_005829755.1| tRNA modification GTPase mnmE [Haemophilus influenzae R2846]
gi|309973499|gb|ADO96700.1| tRNA modification GTPase mnmE [Haemophilus influenzae R2846]
Length = 461
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 117/338 (34%), Positives = 166/338 (49%), Gaps = 77/338 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++RVSGP +++ K KPR A D +LD+G+ L+F
Sbjct: 22 GRGGIGILRVSGPLATKVAQAILG----KCPKPRMADYLPFKD-ADGTILDQGIALYFKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L + ++ G+R A PGEFS++AF N+KLDL Q EA+
Sbjct: 77 PNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLDLAQAEAI 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + A LK L E+ + + NT
Sbjct: 137 ADLIDATSEQAARSA-------LKSLQGEFSKKV------------------------NT 165
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNI----- 333
+ V+ L +E I+ ++ IDF D IE N+
Sbjct: 166 LVDSVIYLRTYVEASIDFPDE--------------------EIDFLADGKIEANLRGIIN 205
Query: 334 -LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
L VRS+ Q GSI +R G+K VI G PN GKSSL+N L ++ +I
Sbjct: 206 QLEDVRSEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAI 250
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
VT I GTTRDV+ +H+ I G P+ ++DTAGLR T ++
Sbjct: 251 VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEV 288
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP +++ K PKPR A D
Sbjct: 10 MKETIVAQATAPGRGGIGILRVSGPLATKVAQAILG----KCPKPRMADYLPFKD-ADGT 64
Query: 86 VLDEGLCLWF 95
+LD+G+ L+F
Sbjct: 65 ILDQGIALYF 74
>gi|261324003|ref|ZP_05963200.1| tRNA modification GTPase mnmE [Brucella neotomae 5K33]
gi|261299983|gb|EEY03480.1| tRNA modification GTPase mnmE [Brucella neotomae 5K33]
Length = 442
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 132/215 (61%), Gaps = 6/215 (2%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+VIR+SGP T +++ C Q + +PR+A+L + + D GL L+FP P+
Sbjct: 21 SGVAVIRISGPKTRFVYETI-C---QAIPEPRHAALLTFRSRNGDAI-DRGLTLFFPAPH 75
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDC EF +HG AV+ +L L +LPG R AE GEF++RAF N K+DLT E L D
Sbjct: 76 SFTGEDCAEFHLHGGKAVVEKMLAVLGELPGYRIAEAGEFTRRAFANGKMDLTIAEGLAD 135
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI AETE QR+ A+ GN ++LYSEWRQ ++ + A +EA +DF+++ + ++ V
Sbjct: 136 LIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVPGSVSMQVW 195
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA 315
Q+ L IE HI S K +R G+ VI A
Sbjct: 196 QQLSALKHEIEHHIA-SGKRAAMLRDGLHVVIVGA 229
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 72/114 (63%), Gaps = 1/114 (0%)
Query: 315 ASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEP 374
A +EA +DF+++ + ++ V Q+ L IE HI S K +R G+ VIVG P
Sbjct: 172 AFIEAELDFADESDVPGSVSMQVWQQLSALKHEIEHHIA-SGKRAAMLRDGLHVVIVGAP 230
Query: 375 NVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428
N GKSSL+NFL + ++I++ GTTRD++E LD+GG PV + DTAGLR T S
Sbjct: 231 NAGKSSLLNFLAGRDVAIISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDS 284
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFALSSG GV+VIR+SGP T +++ C Q +P+PR+A+L +
Sbjct: 9 DTIFALSSGRLPSGVAVIRISGPKTRFVYETI-C---QAIPEPRHAALLTFRSRNGDAI- 63
Query: 88 DEGLCLWFP 96
D GL L+FP
Sbjct: 64 DRGLTLFFP 72
>gi|289548080|ref|YP_003473068.1| tRNA modification GTPase TrmE [Thermocrinis albus DSM 14484]
gi|289181697|gb|ADC88941.1| tRNA modification GTPase TrmE [Thermocrinis albus DSM 14484]
Length = 450
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 122/341 (35%), Positives = 172/341 (50%), Gaps = 71/341 (20%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
+G+ + V+R+SG L +K + KPRYA L +VD + DEG+ +++P
Sbjct: 15 YGESAIGVLRLSGKGVLEKIKPFLKL--KGAVKPRYAHLVTLVDEEGREI-DEGILVFYP 71
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P S+TGED E +HG+ +++ L L G+R AEPGEF++RAF N K+DL Q EA
Sbjct: 72 SPKSYTGEDMIELSLHGNPLILHRAL-ELFLSAGIRLAEPGEFTRRAFLNGKMDLLQAEA 130
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DLI A TEL
Sbjct: 131 VADLIGARTEL------------------------------------------------- 141
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
VR + QL G + IE RIRS + +I A VEA I+FSE +I
Sbjct: 142 AVRCALRQLRGELSDRIE-------RIRSQLLELI--AYVEADIEFSEQ-----DIPTLS 187
Query: 338 RSQVVQLHGSIEKHIE---LSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
R ++++ + K +E + + G +R G+ IVG+PNVGKSSL N L Q +IVT
Sbjct: 188 REEILKRLEDLIKDLEDLLATARVGNFLRKGLNLAIVGKPNVGKSSLFNALLGSQRAIVT 247
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IPGTTRD +++ +IGG P+ L+DTAG+RTTT D +E G
Sbjct: 248 DIPGTTRDFLQEQWNIGGIPINLVDTAGIRTTT-DPVEQMG 287
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
+ I AL++ +G+ + V+R+SG L +K + KPRYA L +VD + +
Sbjct: 5 REPIVALATPYGESAIGVLRLSGKGVLEKIKPFLKL--KGAVKPRYAHLVTLVDEEGREI 62
Query: 87 LDEGLCLWFP 96
DEG+ +++P
Sbjct: 63 -DEGILVFYP 71
>gi|156082555|ref|XP_001608762.1| tRNA modification GTPase TrmE [Babesia bovis T2Bo]
gi|154796011|gb|EDO05194.1| tRNA modification GTPase TrmE , putative [Babesia bovis]
Length = 529
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 117/376 (31%), Positives = 179/376 (47%), Gaps = 77/376 (20%)
Query: 68 PKPRYASLRNIVDPVSKVVLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQK 127
P+ Y L + D + L + G CG++V R++G +L L+ +
Sbjct: 31 PRHTYTHLNDTTDGQTVYGLSSAV-----HEGGCGIAVTRITGKQSLELLQLLTKSTGTN 85
Query: 128 VS------KPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINA 181
S +PR A+LR + D +D + ++FP PNSFTGED E HGS AVI+
Sbjct: 86 ASNNTFECEPRVATLRVLYDKTHSAPIDRVITIYFPAPNSFTGEDVVEIHTHGSRAVISQ 145
Query: 182 ILGA---LTKLPGL--RPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQ 236
+ L+K GL R AE GEF++RAF+N KLDL Q EA+ D+I+AET+++ + A +
Sbjct: 146 LFATIRELSKEYGLKVRQAERGEFTRRAFYNGKLDLIQAEAIRDVIRAETQIEVENAALK 205
Query: 237 MKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIEL 296
+ G L ++Y W + + L VEA I+F+E ++ NT ++ EL
Sbjct: 206 IYGRLSKIYHTWTDRLNQILGIVEAKIEFNEQA--STDLQNTALAR------------EL 251
Query: 297 SNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSN 356
N ++R N +N R+++V +
Sbjct: 252 -NDIATQVR--------------------------NHINDNRAELVSM------------ 272
Query: 357 KCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI 416
G IVG PN GKSSL+N +C + ++IV +PGTTRD + D+ G +
Sbjct: 273 --------GATVAIVGPPNAGKSSLINTICDRNVAIVADLPGTTRDPVHAKYDLNGIKIT 324
Query: 417 LLDTAGLRTTTSDIIE 432
L+DTAG+R S+ E
Sbjct: 325 LVDTAGIRIVESETTE 340
>gi|119475232|ref|ZP_01615585.1| tRNA modification GTPase [marine gamma proteobacterium HTCC2143]
gi|119451435|gb|EAW32668.1| tRNA modification GTPase [marine gamma proteobacterium HTCC2143]
Length = 465
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 123/350 (35%), Positives = 175/350 (50%), Gaps = 86/350 (24%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASL------RNIVDPVSEVVLDEGL 152
G+ GV ++RVSGP++ K++A PRYAS + ++ S+ V+D GL
Sbjct: 17 GRGGVGIVRVSGPNS----KAIASLITDSQLAPRYASYGAFYEANSTINTRSDRVIDYGL 72
Query: 153 CLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDL 212
L+FP PNSFTGED E Q HG +++ +L + KL G R A PGEFS+RAF NNK+DL
Sbjct: 73 TLFFPGPNSFTGEDVLELQAHGGPVILDYLLSEIIKL-GARLARPGEFSERAFLNNKMDL 131
Query: 213 TQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIE 272
TQ EA+ ++I+
Sbjct: 132 TQAEAIA-------------------------------------------------DLID 142
Query: 273 DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICL-ASVEAYIDFSEDEI--I 329
L R+ V L G K +I S + +V+ L VEA IDF E+EI +
Sbjct: 143 SASLQAARNAVRSLQGQFSK----------KIMSLVSAVVNLRVYVEAAIDFPEEEIDFL 192
Query: 330 ED----NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFL 385
D + L+T+ +Q+ ++ K G ++ G+ VI G+PN GKSSL+N L
Sbjct: 193 ADGKVSSDLDTILNQLNRVFSEA--------KQGSLVQEGMTVVIAGKPNAGKSSLLNAL 244
Query: 386 CQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
+ +IVT I GTTRDV+ +H+ I G P+ ++DTAGLR + DIIE EG
Sbjct: 245 SGRDSAIVTEIEGTTRDVLREHIQIDGMPLHIIDTAGLR-DSPDIIEQEG 293
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 14/124 (11%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASL------RNIVDP 81
+TI A+++ G+ GV ++RVSGP++ K++A PRYAS + ++
Sbjct: 7 DTIVAIATAPGRGGVGIVRVSGPNS----KAIASLITDSQLAPRYASYGAFYEANSTINT 62
Query: 82 VSKVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLNALKSMACYPDQKVSKPRYASLR 137
S V+D GL L+FP + G V+ + GP L+ L S ++++P S R
Sbjct: 63 RSDRVIDYGLTLFFPGPNSFTGEDVLELQAHGGPVILDYLLSEIIKLGARLARPGEFSER 122
Query: 138 NIVD 141
++
Sbjct: 123 AFLN 126
>gi|86147167|ref|ZP_01065483.1| tRNA modification GTPase [Vibrio sp. MED222]
gi|85835051|gb|EAQ53193.1| tRNA modification GTPase [Vibrio sp. MED222]
Length = 453
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 168/335 (50%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP +A KV KPRYA + LD+G+ L+FP
Sbjct: 14 GRGGVGIIRVSGPQA----AQVALEVTGKVLKPRYAEYLPF-KSHNGTELDQGIALYFPN 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ ++ + + G+R A PGEFS+RAF N+K+DLTQ EA+
Sbjct: 69 PHSFTGEDVLELQGHGGPVVMDMLIKRILSISGVRAARPGEFSERAFLNDKMDLTQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E
Sbjct: 129 ADLIDASSE-------------------------------------------------EA 139
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
+S + L G K RI + + S+I L VEA IDF E+EI + D ++
Sbjct: 140 AKSALQSLQGEFSK----------RINTLVDSLIYLRIYVEAAIDFPEEEIDFLADGKVS 189
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
T ++ ++E + +N+ + +R G+K VI G PN GKSSL+N L K+ +IVT
Sbjct: 190 TDLQAIID---NLEAVRQEANQGSI-MREGMKVVIAGRPNAGKSSLLNALSGKESAIVTD 245
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 246 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 280
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP +A KV KPRYA + L
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPQA----AQVALEVTGKVLKPRYAEYLPF-KSHNGTEL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALYFPNPHSFTGEDVLELQG 82
>gi|410610862|ref|ZP_11321967.1| tRNA modification GTPase mnmE [Glaciecola psychrophila 170]
gi|410169573|dbj|GAC35856.1| tRNA modification GTPase mnmE [Glaciecola psychrophila 170]
Length = 460
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 113/328 (34%), Positives = 168/328 (51%), Gaps = 65/328 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IR+SG A +++ K+ + R A D + ++ D+G+ ++F
Sbjct: 21 GRGGVGIIRISGNLASTAARTILG----KLPETRKAEYLPFSDTDNNLI-DQGIAIFFKA 75
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L A+ K+P LR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 76 PNSFTGEDVLELQGHGGQVVLDMLLNAILKIPKLRIARPGEFSERAFLNDKLDLAQAEAI 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G Q + ++ VEA IDF ++EI + L+
Sbjct: 136 ADLIDASSEQAAKGALRSLQGAFSQYIHTLVEQVIHLRMYVEAAIDFPDEEI---DFLS- 191
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G I+K +E + IKS T+R
Sbjct: 192 --------DGKIQKDLE----------NIIKS-----------------------FETLR 210
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
Q Q G +R G++ VI G+PN GKSSL+N L + +IVT + G
Sbjct: 211 QQTKQ---------------GALLREGMRVVIAGKPNAGKSSLLNALAGRDAAIVTDVAG 255
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTT 426
TTRDV+++H+ + G P+ ++DTAGLR +
Sbjct: 256 TTRDVLKEHIHLDGMPLHIIDTAGLRDS 283
>gi|392428499|ref|YP_006469510.1| tRNA modification GTPase [Streptococcus intermedius JTH08]
gi|419777515|ref|ZP_14303427.1| tRNA modification GTPase TrmE [Streptococcus intermedius SK54]
gi|383844995|gb|EID82405.1| tRNA modification GTPase TrmE [Streptococcus intermedius SK54]
gi|391757645|dbj|BAM23262.1| tRNA modification GTPase [Streptococcus intermedius JTH08]
Length = 457
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 118/337 (35%), Positives = 171/337 (50%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG ++ + + D + +IVDP + +LDE +
Sbjct: 17 GEGAIGIVRLSGTESFAIAQKIFKGKDLSTVASHTLNYGHIVDPAKDEILDEVMIGAMRS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL + + G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDVIEINTHGGIAVTNEILQLVIR-EGARIAEPGEFTKRAFLNGRVDLTQAEAI 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ IL +LA VE ID+ E + +E
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTLAQVEVNIDYPEYDDVE------ 189
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
E++ K ++C E DF E + +L T R
Sbjct: 190 ----------------EMTTK-----------LLC----EKTADFEE---LLTQLLKTAR 215
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
G +R GI + I+G PNVGKSSL+N L + +IVT I G
Sbjct: 216 R-------------------GKILREGISTAIIGRPNVGKSSLLNNLLCEDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-DTDDIVEQIG 292
>gi|296533444|ref|ZP_06896027.1| tRNA modification GTPase TrmE [Roseomonas cervicalis ATCC 49957]
gi|296266224|gb|EFH12266.1| tRNA modification GTPase TrmE [Roseomonas cervicalis ATCC 49957]
Length = 439
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 119/337 (35%), Positives = 161/337 (47%), Gaps = 66/337 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ +S++R+SGPD+ L +A ++ +PR ASLR + P + +LDE L LWFP
Sbjct: 15 GRAAISLLRLSGPDSALVLTRLAG----RLPRPRQASLRRLRHPETGELLDEALLLWFPA 70
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P S+TGED E +HG AV+ + AL G RPAEPGEF++RAF N +LDLT E +
Sbjct: 71 PRSYTGEDSAELHLHGGRAVLEGVSAALLAC-GARPAEPGEFTRRAFLNGRLDLTAAEGI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET QR++AL Q G L Y+ W + + LA EA I+F+ED I D + +
Sbjct: 130 ADLIDAETAAQRRQALRQAGGALAARYAGWGERLTRLLAHQEASIEFAEDGIPND-LDDE 188
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
VR L I H+ + G R+R G+ + I A N +
Sbjct: 189 VRQGAATLAAEIAAHLADGGR-GERLREGLWAAIIGAP------------------NAGK 229
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
S ++ E I V R+G +V
Sbjct: 230 SSLLNALAGREAAI-------VSARAGTTRDVV--------------------------- 255
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
E LD+GG PV+L DTAGLR T D IE EG
Sbjct: 256 ------EVRLDLGGVPVLLADTAGLR-DTPDEIEAEG 285
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 4/71 (5%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ +TIFAL+SG G+ +S++R+SGPD+ L +A ++P+PR ASLR + P +
Sbjct: 3 LSDTIFALASGAGRAAISLLRLSGPDSALVLTRLAG----RLPRPRQASLRRLRHPETGE 58
Query: 86 VLDEGLCLWFP 96
+LDE L LWFP
Sbjct: 59 LLDEALLLWFP 69
>gi|414176722|ref|ZP_11430951.1| tRNA modification GTPase TrmE [Afipia broomeae ATCC 49717]
gi|410886875|gb|EKS34687.1| tRNA modification GTPase TrmE [Afipia broomeae ATCC 49717]
Length = 444
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 118/336 (35%), Positives = 167/336 (49%), Gaps = 67/336 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
+++IRVSGP A++ + C +K+ PR A L + D + +DE + LWFP P
Sbjct: 18 SAIAIIRVSGPQARAAVERL-C---RKLPTPRVAHLATLRD-LDGSAIDESVVLWFPGPG 72
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
S TGED EF VHG AVI A+ AL + GLRPAEPGEF++RAF N KL D
Sbjct: 73 SATGEDVAEFHVHGGRAVIAAMFDALGSIDGLRPAEPGEFTRRAFENGKL---------D 123
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
L +AE D++I + R
Sbjct: 124 LTEAE----------------------------------------GLDDLIHADTDRQRR 143
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI-CLASVEAYIDFSEDEIIEDNILNTVRS 339
+ L G + GVR + + +I A +EA IDFS++ + ++
Sbjct: 144 QALRHLKGLL----------GVRAETWRQQIIEASALIEAGIDFSDEGDVSAELVAPALR 193
Query: 340 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGT 399
++ L IE+ + S+ R+R G+ I G PN GKS+L+N L +++ +IV+ GT
Sbjct: 194 RIAALKSEIEETL-CSSAQSERLREGLTVAIAGPPNAGKSTLLNRLARREAAIVSPHAGT 252
Query: 400 TRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TRDVIE HLD+ GYPV L+DTAG+R T D +E EG
Sbjct: 253 TRDVIEVHLDLDGYPVTLIDTAGVR-DTHDPVEQEG 287
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TIFALSSG +++IRVSGP A++ + C +K+P PR A L + D + +
Sbjct: 6 QTIFALSSGRAPSAIAIIRVSGPQARAAVERL-C---RKLPTPRVAHLATLRD-LDGSAI 60
Query: 88 DEGLCLWFPRHGKC 101
DE + LWFP G
Sbjct: 61 DESVVLWFPGPGSA 74
>gi|91974909|ref|YP_567568.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris BisB5]
gi|91681365|gb|ABE37667.1| tRNA modification GTPase trmE [Rhodopseudomonas palustris BisB5]
Length = 462
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 169/337 (50%), Gaps = 73/337 (21%)
Query: 103 VSVIRVSGP---DTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKP 159
++++RVSGP D L AL + PR A R ++ ++ ++D+G+ LWF P
Sbjct: 22 IAMVRVSGPRAGDLLTALTG-------SLPPPRTAR-RVLIRDQNQDLIDDGVALWFAGP 73
Query: 160 NSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALG 219
S TGED EF +HG AV+ A++ AL+ G+RPAEPGEF++RAF N KLDLT+ E L
Sbjct: 74 ASATGEDVAEFHIHGGRAVLAALVRALSAFDGVRPAEPGEFTRRAFENGKLDLTEAEGL- 132
Query: 220 DLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTV 279
D++I +
Sbjct: 133 ------------------------------------------------DDLIHADTEAQR 144
Query: 280 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI-CLASVEAYIDFSEDEIIEDNILNTVR 338
R V QL G + G R R +I A +EA IDF+++ ++ ++
Sbjct: 145 RQAVRQLGGLL----------GDRARRWRAQIIEATALIEAGIDFADEGDVQGELMAPAL 194
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ LH I + + + R+R G+ I G PNVGKS+L+N L +++++IV+ G
Sbjct: 195 QTIAALHDEIAEVLAAQGRS-ERLRDGMVVAIAGPPNVGKSTLINRLARREVAIVSPHAG 253
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE LD+GGYPV ++DTAG+R ++D +E EG
Sbjct: 254 TTRDVIEVQLDLGGYPVTVIDTAGIR-ESNDPVEQEG 289
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 11/71 (15%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGP---DTLNALKSMACYPDQKVPKPRYASLRNIVDPVSK 84
TIFAL++G ++++RVSGP D L AL +P PR A R ++ ++
Sbjct: 8 QTIFALATGQLPSAIAMVRVSGPRAGDLLTALTG-------SLPPPRTAR-RVLIRDQNQ 59
Query: 85 VVLDEGLCLWF 95
++D+G+ LWF
Sbjct: 60 DLIDDGVALWF 70
>gi|77406399|ref|ZP_00783459.1| tRNA modification GTPase TrmE [Streptococcus agalactiae H36B]
gi|77174990|gb|EAO77799.1| tRNA modification GTPase TrmE [Streptococcus agalactiae H36B]
Length = 458
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 115/337 (34%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D L + D + + +IVDP +LDE +
Sbjct: 18 GEGAIGIVRISGTDALKIASKIYRGKDLSAIQSHTLNYGHIVDPDKNEILDEVMLGVMLA 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL + + G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 78 PKTFTREDVIEINTHGGIAVTNEILQLILR-HGARMAEPGEFTKRAFLNGRVDLTQAEAV 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI+A+T+ A+ Q+ G+LK L + RQ ILNT
Sbjct: 137 MDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQ-----------------------EILNT 173
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ +R
Sbjct: 174 -----------------------------------LAQVEVNIDYPEYDDVEEMTTTLMR 198
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + +E + + + G +R G+ + I+G PNVGKSSL+N L +++ +IVT I G
Sbjct: 199 EKTQEFQALMENLLRTARR-GKILREGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEG 257
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 258 TTRDVIEEYVNIKGVPLKLVDTAGIR-DTDDIVEKIG 293
>gi|326436265|gb|EGD81835.1| hypothetical protein PTSG_02550 [Salpingoeca sp. ATCC 50818]
Length = 395
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 88/183 (48%), Positives = 123/183 (67%), Gaps = 9/183 (4%)
Query: 100 KCGVSVIRVSGP---DTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWF 156
+ GV+VIRVSGP D++ L A P R AS+R + DP+S +LD L L F
Sbjct: 23 RAGVAVIRVSGPQAHDSITQLTKAAAPP------ARLASVRKLFDPLSGDMLDHALVLRF 76
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
+ +SFTGE EFQVHG AV++++L AL + GLR AEPGEF++R+F+N+++DLTQ E
Sbjct: 77 DEGHSFTGEAIAEFQVHGGNAVVSSVLKALEGVEGLRHAEPGEFTRRSFWNDRMDLTQVE 136
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
L DLI AETE QR++AL M G ++Y W+ +L ++A +EAYIDFSE+E IE+++
Sbjct: 137 GLSDLITAETEQQRKQALSYMTGKASKVYQTWKSTLLRAVAQIEAYIDFSEEENIEEDVT 196
Query: 277 NTV 279
V
Sbjct: 197 ARV 199
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
L TIFALSSG + GV+VIRVSGP +++ + P R AS+R + DP+S
Sbjct: 8 LGQGETIFALSSGGVRAGVAVIRVSGPQAHDSITQLT---KAAAPPARLASVRKLFDPLS 64
Query: 84 KVVLDEGLCLWF 95
+LD L L F
Sbjct: 65 GDMLDHALVLRF 76
>gi|306843478|ref|ZP_07476079.1| tRNA modification GTPase TrmE [Brucella inopinata BO1]
gi|306276169|gb|EFM57869.1| tRNA modification GTPase TrmE [Brucella inopinata BO1]
Length = 442
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 132/215 (61%), Gaps = 6/215 (2%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+VIR+SGP T +++ C Q + +PR+A+L + + D GL L+FP P+
Sbjct: 21 SGVAVIRISGPKTRFVYETI-C---QAIPEPRHAALLTFRSRNGDAI-DRGLTLFFPAPH 75
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDC EF +HG AV+ +L L +LPG R AE GEF++RAF N K+DLT E L D
Sbjct: 76 SFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDLTIAEGLAD 135
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI AETE QR+ AL GN ++LYSEWRQ ++ + A +EA +DF+++ + ++ V
Sbjct: 136 LIAAETEGQRRLALQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVPGSVSMQVW 195
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA 315
Q+ L IE HI S K +R G+ VI A
Sbjct: 196 QQLSALKHEIEHHIA-SGKRAAMLRDGLHVVIVGA 229
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 72/114 (63%), Gaps = 1/114 (0%)
Query: 315 ASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEP 374
A +EA +DF+++ + ++ V Q+ L IE HI S K +R G+ VIVG P
Sbjct: 172 AFIEAELDFADESDVPGSVSMQVWQQLSALKHEIEHHIA-SGKRAAMLRDGLHVVIVGAP 230
Query: 375 NVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428
N GKSSL+NFL + ++I++ GTTRD++E LD+GG PV + DTAGLR T S
Sbjct: 231 NAGKSSLLNFLAGRDVAIISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDS 284
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFALSSG GV+VIR+SGP T +++ C Q +P+PR+A+L +
Sbjct: 9 DTIFALSSGRLPSGVAVIRISGPKTRFVYETI-C---QAIPEPRHAALLTFRSRNGDAI- 63
Query: 88 DEGLCLWFP 96
D GL L+FP
Sbjct: 64 DRGLTLFFP 72
>gi|339301636|ref|ZP_08650730.1| tRNA modification GTPase TrmE [Streptococcus agalactiae ATCC 13813]
gi|319744919|gb|EFV97251.1| tRNA modification GTPase TrmE [Streptococcus agalactiae ATCC 13813]
Length = 469
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 115/337 (34%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D L + D + + +IVDP +LDE +
Sbjct: 29 GEGAIGIVRISGTDALKIASKIYRGKDLSAIQSHTLNYGHIVDPDKNEILDEVMLGVMLA 88
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL + + G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 89 PKTFTREDVIEINTHGGIAVTNEILQLILR-HGARMAEPGEFTKRAFLNGRVDLTQAEAV 147
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI+A+T+ A+ Q+ G+LK L + RQ ILNT
Sbjct: 148 MDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQ-----------------------EILNT 184
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ +R
Sbjct: 185 -----------------------------------LAQVEVNIDYPEYDDVEEMTTTLMR 209
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + +E + + + G +R G+ + I+G PNVGKSSL+N L +++ +IVT I G
Sbjct: 210 EKTQEFQALMENLLRTARR-GKILREGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEG 268
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 269 TTRDVIEEYVNIKGVPLKLVDTAGIR-DTDDIVEKIG 304
>gi|433656324|ref|YP_007273703.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio
parahaemolyticus BB22OP]
gi|432507012|gb|AGB08529.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio
parahaemolyticus BB22OP]
Length = 453
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 114/334 (34%), Positives = 163/334 (48%), Gaps = 69/334 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP +A K KPRYA VLD+G+ L+FP
Sbjct: 14 GRGGVGIIRVSGPKA----NQVALEVTGKTLKPRYAEYLPF-QAEDGTVLDQGIALYFPN 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ ++ + + G+R A PGEFS+RAF N+K+DLTQ EA+
Sbjct: 69 PHSFTGEDVLELQGHGGPVVMDMLIKRILGIAGVRAARPGEFSERAFLNDKMDLTQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E
Sbjct: 129 ADLIDASSE-------------------------------------------------EA 139
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI--IEDNILNT 336
+S + L G +HI+ + + +R VEA IDF E+EI + D +
Sbjct: 140 AKSALQSLQGQFSQHIQTLVESLIHLR---------IYVEAAIDFPEEEIDFLADGKVAG 190
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
++ ++ K +N+ G +R G+K VI G PN GKSSL+N L K+ +IVT I
Sbjct: 191 DLQAIIDNLDAVRKE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTDI 246
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 247 AGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 280
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP +A K KPRYA VL
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPKA----NQVALEVTGKTLKPRYAEYLPF-QAEDGTVL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALYFPNPHSFTGEDVLELQG 82
>gi|205422245|sp|Q13E22.2|MNME_RHOPS RecName: Full=tRNA modification GTPase MnmE
Length = 460
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 169/337 (50%), Gaps = 73/337 (21%)
Query: 103 VSVIRVSGP---DTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKP 159
++++RVSGP D L AL + PR A R ++ ++ ++D+G+ LWF P
Sbjct: 20 IAMVRVSGPRAGDLLTALTG-------SLPPPRTAR-RVLIRDQNQDLIDDGVALWFAGP 71
Query: 160 NSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALG 219
S TGED EF +HG AV+ A++ AL+ G+RPAEPGEF++RAF N KLDLT+ E L
Sbjct: 72 ASATGEDVAEFHIHGGRAVLAALVRALSAFDGVRPAEPGEFTRRAFENGKLDLTEAEGL- 130
Query: 220 DLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTV 279
D++I +
Sbjct: 131 ------------------------------------------------DDLIHADTEAQR 142
Query: 280 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI-CLASVEAYIDFSEDEIIEDNILNTVR 338
R V QL G + G R R +I A +EA IDF+++ ++ ++
Sbjct: 143 RQAVRQLGGLL----------GDRARRWRAQIIEATALIEAGIDFADEGDVQGELMAPAL 192
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ LH I + + + R+R G+ I G PNVGKS+L+N L +++++IV+ G
Sbjct: 193 QTIAALHDEIAEVLAAQGRS-ERLRDGMVVAIAGPPNVGKSTLINRLARREVAIVSPHAG 251
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE LD+GGYPV ++DTAG+R ++D +E EG
Sbjct: 252 TTRDVIEVQLDLGGYPVTVIDTAGIR-ESNDPVEQEG 287
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 11/71 (15%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGP---DTLNALKSMACYPDQKVPKPRYASLRNIVDPVSK 84
TIFAL++G ++++RVSGP D L AL +P PR A R ++ ++
Sbjct: 6 QTIFALATGQLPSAIAMVRVSGPRAGDLLTALTG-------SLPPPRTAR-RVLIRDQNQ 57
Query: 85 VVLDEGLCLWF 95
++D+G+ LWF
Sbjct: 58 DLIDDGVALWF 68
>gi|238793137|ref|ZP_04636765.1| tRNA modification GTPase mnmE [Yersinia intermedia ATCC 29909]
gi|238727510|gb|EEQ19036.1| tRNA modification GTPase mnmE [Yersinia intermedia ATCC 29909]
Length = 454
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 121/352 (34%), Positives = 174/352 (49%), Gaps = 75/352 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG A +A K+ KPRYA D LD+G+ L+FP
Sbjct: 15 GRGGVGILRVSG----RAAAEVAQAVLGKLPKPRYADYLPFKD-TDGSTLDQGIALYFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
RS V L G+ V+I ++++ L VEA IDF ++EI + D
Sbjct: 141 ARSAVNSLQGAFS----------VKIHQLVEALTHLRIYVEAAIDFPDEEIDFLSDG--- 187
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+ Q+ + +E+ + + G +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 188 KIEGQLNGVMADLEQ-VRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 246
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI----IETEGNLLEKNNQ 443
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++ IE N +E+ ++
Sbjct: 247 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADR 298
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
++ +TI A ++ G+ GV ++RVSG A +A K+PKPRYA D
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRVSG----RAAAEVAQAVLGKLPKPRYADYLPFKD-TD 55
Query: 84 KVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRN 138
LD+G+ L+FP + G V+ + GP L+ LK + P ++++P S R
Sbjct: 56 GSTLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERA 115
Query: 139 IVD 141
++
Sbjct: 116 FLN 118
>gi|343511665|ref|ZP_08748820.1| tRNA modification GTPase TrmE [Vibrio scophthalmi LMG 19158]
gi|343515737|ref|ZP_08752787.1| tRNA modification GTPase TrmE [Vibrio sp. N418]
gi|342797400|gb|EGU33050.1| tRNA modification GTPase TrmE [Vibrio scophthalmi LMG 19158]
gi|342797693|gb|EGU33334.1| tRNA modification GTPase TrmE [Vibrio sp. N418]
Length = 453
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 115/335 (34%), Positives = 168/335 (50%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP + +A K +PRYA D + LD+G+ L+FP
Sbjct: 14 GRGGVGIIRVSGP----LAEKVALEVAGKALRPRYAEYLPFCDEAGKQ-LDQGIALFFPN 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ ++ + K+ G+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 69 PHSFTGEDVLELQGHGGPVVMDMLIKRILKIDGIRTARPGEFSERAFLNDKLDLAQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E
Sbjct: 129 ADLIDASSE-------------------------------------------------EA 139
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
+S + L G+ + RI + + S+I L VEA IDF E+EI + D ++
Sbjct: 140 AKSALQSLQGAFSQ----------RINTLVDSLIYLRIYVEAAIDFPEEEIDFLADGKVS 189
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
++ ++ K +N+ + +R G+K VI G PN GKSSL+N L K+ +IVT
Sbjct: 190 ADLQAIIDNLAAVRKE---ANQGSI-MREGMKVVIAGRPNAGKSSLLNALSGKESAIVTD 245
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 246 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 280
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + +A K +PRYA D K L
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGP----LAEKVALEVAGKALRPRYAEYLPFCDEAGK-QL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALFFPNPHSFTGEDVLELQG 82
>gi|407722342|ref|YP_006842004.1| tRNA modification GTPase MnmE [Sinorhizobium meliloti Rm41]
gi|418402604|ref|ZP_12976113.1| tRNA modification GTPase TrmE [Sinorhizobium meliloti CCNWSX0020]
gi|359503432|gb|EHK75985.1| tRNA modification GTPase TrmE [Sinorhizobium meliloti CCNWSX0020]
gi|407320574|emb|CCM69178.1| tRNA modification GTPase MnmE [Sinorhizobium meliloti Rm41]
Length = 439
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 130/213 (61%), Gaps = 6/213 (2%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV++IRVSGP+T +AL + C + PR A+LR I E LD GL L+FP P
Sbjct: 17 AGVAIIRVSGPETADALVRL-C---GTLPPPRIATLRTIRTRNGET-LDSGLVLYFPTPA 71
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDCCE QVHG AV++AIL L GLR AE GEF++RAF N KLDL + E L D
Sbjct: 72 SFTGEDCCELQVHGGRAVVSAILDELAATGGLRHAEAGEFARRAFQNGKLDLVEVEGLAD 131
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI AETE+QR+ A+ Q G LY+ W + + S A +EA +DF++++ + ++ +
Sbjct: 132 LIAAETEMQRRLAIEQSGGGQSALYAGWARRLTHSRAMIEAELDFADEDDVPGSVSAVIW 191
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
V +L I+ HI + + IR G+K VI
Sbjct: 192 EDVGRLRQEIDGHIARAGLAEI-IRDGLKIVIA 223
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 77/121 (63%), Gaps = 2/121 (1%)
Query: 315 ASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEP 374
A +EA +DF++++ + ++ + V +L I+ HI + + IR G+K VI GEP
Sbjct: 168 AMIEAELDFADEDDVPGSVSAVIWEDVGRLRQEIDGHIARAGLAEI-IRDGLKIVIAGEP 226
Query: 375 NVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETE 434
N GKSSL+N L ++ I+IVT + GTTRDV+ L + G+ V L DTAGLR T +++E E
Sbjct: 227 NAGKSSLLNALARRDIAIVTEVAGTTRDVLSVDLSLAGFSVKLFDTAGLR-ETDELVERE 285
Query: 435 G 435
G
Sbjct: 286 G 286
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI+ALSSG GV++IRVSGP+T +AL + C +P PR A+LR I + L
Sbjct: 5 DTIYALSSGSLPAGVAIIRVSGPETADALVRL-C---GTLPPPRIATLRTIRTRNGE-TL 59
Query: 88 DEGLCLWFP 96
D GL L+FP
Sbjct: 60 DSGLVLYFP 68
>gi|161621425|ref|NP_387444.2| tRNA modification GTPase TrmE [Sinorhizobium meliloti 1021]
gi|334318030|ref|YP_004550649.1| tRNA modification GTPase mnmE [Sinorhizobium meliloti AK83]
gi|384531156|ref|YP_005715244.1| tRNA modification GTPase mnmE [Sinorhizobium meliloti BL225C]
gi|384537873|ref|YP_005721958.1| probabable thiophene and furan oxidation protein [Sinorhizobium
meliloti SM11]
gi|433615111|ref|YP_007191909.1| tRNA modification GTPase TrmE [Sinorhizobium meliloti GR4]
gi|205422307|sp|Q92KW1.2|MNME_RHIME RecName: Full=tRNA modification GTPase MnmE
gi|187904240|emb|CAC47917.2| Probable thiophene and furan oxidation protein [Sinorhizobium
meliloti 1021]
gi|333813332|gb|AEG06001.1| tRNA modification GTPase mnmE [Sinorhizobium meliloti BL225C]
gi|334097024|gb|AEG55035.1| tRNA modification GTPase mnmE [Sinorhizobium meliloti AK83]
gi|336034765|gb|AEH80697.1| probabable thiophene and furan oxidation protein [Sinorhizobium
meliloti SM11]
gi|429553301|gb|AGA08310.1| tRNA modification GTPase TrmE [Sinorhizobium meliloti GR4]
Length = 439
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 130/213 (61%), Gaps = 6/213 (2%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV++IRVSGP+T +AL + C + PR A+LR I E LD GL L+FP P
Sbjct: 17 AGVAIIRVSGPETADALVRL-C---GTLPPPRIATLRTIRTRNGET-LDSGLVLYFPTPA 71
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDCCE QVHG AV++AIL L GLR AE GEF++RAF N KLDL + E L D
Sbjct: 72 SFTGEDCCELQVHGGRAVVSAILDELAATGGLRHAEAGEFARRAFQNGKLDLVEVEGLAD 131
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI AETE+QR+ A+ Q G LY+ W + + S A +EA +DF++++ + ++ +
Sbjct: 132 LIAAETEMQRRLAIEQSGGGQSALYAGWARRLTHSRAMIEAELDFADEDDVPGSVSAVIW 191
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
V +L I+ HI + + IR G+K VI
Sbjct: 192 EDVGRLRQEIDGHIARAGLAEI-IRDGLKIVIA 223
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 77/121 (63%), Gaps = 2/121 (1%)
Query: 315 ASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEP 374
A +EA +DF++++ + ++ + V +L I+ HI + + IR G+K VI GEP
Sbjct: 168 AMIEAELDFADEDDVPGSVSAVIWEDVGRLRQEIDGHIARAGLAEI-IRDGLKIVIAGEP 226
Query: 375 NVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETE 434
N GKSSL+N L ++ I+IVT + GTTRDV+ L + G+ V L DTAGLR T +++E E
Sbjct: 227 NAGKSSLLNALARRDIAIVTEVAGTTRDVLSVDLSLAGFSVKLFDTAGLR-ETDELVERE 285
Query: 435 G 435
G
Sbjct: 286 G 286
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI+ALSSG GV++IRVSGP+T +AL + C +P PR A+LR I + L
Sbjct: 5 DTIYALSSGSLPAGVAIIRVSGPETADALVRL-C---GTLPPPRIATLRTIRTRNGE-TL 59
Query: 88 DEGLCLWFP 96
D GL L+FP
Sbjct: 60 DSGLVLYFP 68
>gi|322835121|ref|YP_004215148.1| tRNA modification GTPase TrmE [Rahnella sp. Y9602]
gi|384260344|ref|YP_005404278.1| tRNA modification GTPase TrmE [Rahnella aquatilis HX2]
gi|321170322|gb|ADW76021.1| tRNA modification GTPase TrmE [Rahnella sp. Y9602]
gi|380756320|gb|AFE60711.1| tRNA modification GTPase TrmE [Rahnella aquatilis HX2]
Length = 454
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 117/348 (33%), Positives = 164/348 (47%), Gaps = 69/348 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG A + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISG----RAARDVAQAVLGKLPKPRYADYLPFQD-ADGSTLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + L +R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRIIALENVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E
Sbjct: 130 ADLIDASSE-------------------------------------------------QA 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS V L G+ I + +R +++ I E IDF D IE LNTV
Sbjct: 141 ARSAVNSLQGAFSNRIHHLVEALTHLRIFVEAAIDFPDEE--IDFLSDGKIEAK-LNTVM 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + + G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 198 GDL--------DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI----IETEGNLLEKNN 442
TTRDV+ +H+ + G P+ ++DTAGLR + ++ IE N +E+ +
Sbjct: 250 TTRDVLREHIHLDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQAD 297
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
++ +TI A ++ G+ GV ++R+SG A + +A K+PKPRYA D
Sbjct: 1 MSTSDTIIAQATPPGRGGVGILRISG----RAARDVAQAVLGKLPKPRYADYLPFQD-AD 55
Query: 84 KVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRN 138
LD+G+ LWFP + G V+ + GP L+ LK + + ++++P S R
Sbjct: 56 GSTLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIIALENVRIARPGEFSERA 115
Query: 139 IVD 141
++
Sbjct: 116 FLN 118
>gi|383192306|ref|YP_005202434.1| tRNA modification GTPase TrmE [Rahnella aquatilis CIP 78.65 = ATCC
33071]
gi|371590564|gb|AEX54294.1| tRNA modification GTPase TrmE [Rahnella aquatilis CIP 78.65 = ATCC
33071]
Length = 454
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 113/332 (34%), Positives = 157/332 (47%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG A + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISG----RAARDVAQAVLGKLPKPRYADYLPFQD-ADGSTLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + L +R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRIIALENVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E
Sbjct: 130 ADLIDASSE-------------------------------------------------QA 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS V L G+ I + +R +++ I E IDF D IE LNTV
Sbjct: 141 ARSAVNSLQGAFSNRIHHLVEALTHLRIFVEAAIDFPDEE--IDFLSDGKIEAK-LNTVM 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + + G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 198 GDL--------DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ + G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHLDGMPLHIIDTAGLREASDEV 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
++ +TI A ++ G+ GV ++R+SG A + +A K+PKPRYA D
Sbjct: 1 MSTSDTIIAQATPPGRGGVGILRISG----RAARDVAQAVLGKLPKPRYADYLPFQD-AD 55
Query: 84 KVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRN 138
LD+G+ LWFP + G V+ + GP L+ LK + + ++++P S R
Sbjct: 56 GSTLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIIALENVRIARPGEFSERA 115
Query: 139 IVD 141
++
Sbjct: 116 FLN 118
>gi|22537039|ref|NP_687890.1| tRNA modification GTPase TrmE [Streptococcus agalactiae 2603V/R]
gi|76788077|ref|YP_329621.1| tRNA modification GTPase TrmE [Streptococcus agalactiae A909]
gi|77410695|ref|ZP_00787054.1| tRNA modification GTPase TrmE [Streptococcus agalactiae CJB111]
gi|406709365|ref|YP_006764091.1| tRNA modification GTPase TrmE [Streptococcus agalactiae
GD201008-001]
gi|417005149|ref|ZP_11943742.1| tRNA modification GTPase TrmE [Streptococcus agalactiae FSL S3-026]
gi|424049561|ref|ZP_17787112.1| tRNA modification GTPase TrmE [Streptococcus agalactiae ZQ0910]
gi|32171818|sp|Q8CX13.1|MNME_STRA5 RecName: Full=tRNA modification GTPase MnmE
gi|123601915|sp|Q3K1I2.1|MNME_STRA1 RecName: Full=tRNA modification GTPase MnmE
gi|22533896|gb|AAM99762.1|AE014231_20 tRNA modification GTPase TrmE [Streptococcus agalactiae 2603V/R]
gi|76563134|gb|ABA45718.1| tRNA modification GTPase TrmE [Streptococcus agalactiae A909]
gi|77163231|gb|EAO74183.1| tRNA modification GTPase TrmE [Streptococcus agalactiae CJB111]
gi|341576962|gb|EGS27370.1| tRNA modification GTPase TrmE [Streptococcus agalactiae FSL S3-026]
gi|389648834|gb|EIM70323.1| tRNA modification GTPase TrmE [Streptococcus agalactiae ZQ0910]
gi|406650250|gb|AFS45651.1| tRNA modification GTPase TrmE [Streptococcus agalactiae
GD201008-001]
Length = 458
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 115/337 (34%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D L + D + + +IVDP +LDE +
Sbjct: 18 GEGAIGIVRISGTDALKIASKIYRGKDLSAIQSHTLNYGHIVDPDKNEILDEVMLGVMLA 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL + + G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 78 PKTFTREDVIEINTHGGIAVTNEILQLILR-HGARMAEPGEFTKRAFLNGRVDLTQAEAV 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI+A+T+ A+ Q+ G+LK L + RQ ILNT
Sbjct: 137 MDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQ-----------------------EILNT 173
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ +R
Sbjct: 174 -----------------------------------LAQVEVNIDYPEYDDVEEMTTTLMR 198
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + +E + + + G +R G+ + I+G PNVGKSSL+N L +++ +IVT I G
Sbjct: 199 EKTQEFQALMENLLRTARR-GKILREGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEG 257
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 258 TTRDVIEEYVNIKGVPLKLVDTAGIR-DTDDIVEKIG 293
>gi|190171220|gb|ACE63680.1| ThdF [Enterobacter kobei]
Length = 439
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 116/335 (34%), Positives = 169/335 (50%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKDS-DGTPLDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 122 ADL-----------------------------------------IDASSEQ--------A 132
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
RS + L G+ R+ ++++ L VEA IDF ++EI + D
Sbjct: 133 ARSALNSLQGAFS----------ARVNHLVEALTHLRIYVEAAIDFPDEEIDFLSDG--- 179
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+ +Q+ Q+ ++ + + G +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 180 KIEAQLNQVMSDLDA-VRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 238
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 239 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 273
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++R+SG L A + +A K+PKPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKDS-DGTPLDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P +++KP S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLN 110
>gi|430809707|ref|ZP_19436822.1| tRNA modification GTPase TrmE [Cupriavidus sp. HMR-1]
gi|429497854|gb|EKZ96374.1| tRNA modification GTPase TrmE [Cupriavidus sp. HMR-1]
Length = 475
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 118/342 (34%), Positives = 165/342 (48%), Gaps = 72/342 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ V+RVSGPD + A+ C + +PR+A+ VD V+ D GL L+FP
Sbjct: 16 GRGGIGVVRVSGPD-VGAVMRAVC---GRTLQPRHATYLPFVDARGNVI-DHGLALYFPA 70
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILG---ALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
PNS+TGE+ E Q HG V+ +L K GLR AEPGEF++RAF N+KLDL Q
Sbjct: 71 PNSYTGEEVLELQGHGGPVVMQMLLSRCLEAGKDIGLRVAEPGEFTRRAFLNDKLDLAQA 130
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
EA+ DLI+A TE + A M+G + + ++ VEA +DF E+EI
Sbjct: 131 EAVADLIEASTEAAARSAARSMEGEFSKAIHALVEKVIHLRMLVEATLDFPEEEI----- 185
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCG--VRIRSGIKSVICLASVEAYIDFSEDEIIEDNI 333
+E SN G RIR + V+ A
Sbjct: 186 ----------------DFLEASNARGQLTRIREDLAGVLKQA------------------ 211
Query: 334 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIV 393
+ G +R G+ V+ G+PNVGKSSL+N L ++IV
Sbjct: 212 -----------------------RQGSLLREGLSVVLAGQPNVGKSSLLNALAGSDLAIV 248
Query: 394 TSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
T I GTTRD + + + I G P+ ++DTAGLR +D +E G
Sbjct: 249 TPIAGTTRDRVRETIQIDGIPLHIIDTAGLRDDAADEVERIG 290
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 30 IFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDE 89
I A+++ G+ G+ V+RVSGPD + A+ C + +PR+A+ VD V+ D
Sbjct: 8 IAAIATAPGRGGIGVVRVSGPD-VGAVMRAVC---GRTLQPRHATYLPFVDARGNVI-DH 62
Query: 90 GLCLWFP 96
GL L+FP
Sbjct: 63 GLALYFP 69
>gi|407367469|ref|ZP_11114001.1| tRNA modification GTPase TrmE [Pseudomonas mandelii JR-1]
Length = 456
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 117/334 (35%), Positives = 163/334 (48%), Gaps = 68/334 (20%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYP-DQKVSKPRYASLRNIVDPVSEVVLDEGLCLWF 156
G+ GV ++R+SGP L S+A + KPR+A ++ +E VLDEG+ L+F
Sbjct: 15 QGRGGVGIVRISGP-----LASIAARAISGRELKPRFAHYGPFLNE-NEEVLDEGIALYF 68
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P PNSFTGED E Q HG V++ +L +L G R A PGEFS+RAF N+KLDL Q E
Sbjct: 69 PGPNSFTGEDVLELQGHGGPIVLDMLLKRCLEL-GCRLARPGEFSERAFLNDKLDLAQAE 127
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ DLI+A + + AL ++G + ++ VEA IDF E+EI
Sbjct: 128 AIADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLIGLRIYVEAAIDFPEEEI------ 181
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
+ V A +D DE L+T
Sbjct: 182 ---------------------------------DFLADGHVLAMLDKVRDE------LST 202
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
V + Q G +R G+ VI G PN GKSSL+N L ++ +IVT I
Sbjct: 203 VLREAGQ---------------GALLRDGMTVVIAGRPNAGKSSLLNALAGREAAIVTEI 247
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRD++ +H+ I G P+ ++DTAGLR T +
Sbjct: 248 AGTTRDILREHIHIDGMPLHVVDTAGLRDTDDQV 281
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYP-DQKVPKPRYASLRNIVDPVSKV 85
+ TI A+++ G+ GV ++R+SGP L S+A + KPR+A ++ ++
Sbjct: 5 RETIAAVATAQGRGGVGIVRISGP-----LASIAARAISGRELKPRFAHYGPFLNE-NEE 58
Query: 86 VLDEGLCLWFP 96
VLDEG+ L+FP
Sbjct: 59 VLDEGIALYFP 69
>gi|25010947|ref|NP_735342.1| tRNA modification GTPase TrmE [Streptococcus agalactiae NEM316]
gi|77413158|ref|ZP_00789357.1| tRNA modification GTPase TrmE [Streptococcus agalactiae 515]
gi|32171831|sp|Q8E5T7.1|MNME_STRA3 RecName: Full=tRNA modification GTPase MnmE
gi|23095326|emb|CAD46537.1| unknown [Streptococcus agalactiae NEM316]
gi|77160776|gb|EAO71888.1| tRNA modification GTPase TrmE [Streptococcus agalactiae 515]
Length = 458
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 115/337 (34%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D L + D + + +IVDP +LDE +
Sbjct: 18 GEGAIGIVRISGTDALKIASKIYRGKDLSAIQSHTLNYGHIVDPDKNEILDEVMLGVMLA 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL + + G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 78 PKTFTREDVIEINTHGGIAVTNEILQLILR-HGARMAEPGEFTKRAFLNGRVDLTQAEAV 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI+A+T+ A+ Q+ G+LK L + RQ ILNT
Sbjct: 137 MDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQ-----------------------EILNT 173
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ +R
Sbjct: 174 -----------------------------------LAQVEVNIDYPEYDDVEEMTTTLMR 198
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + +E + + + G +R G+ + I+G PNVGKSSL+N L +++ +IVT I G
Sbjct: 199 EKTQEFQALMENLLRTARR-GKILREGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEG 257
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 258 TTRDVIEEYVNIKGVPLKLVDTAGIR-DTDDIVEKIG 293
>gi|62290906|ref|YP_222699.1| tRNA modification GTPase TrmE [Brucella abortus bv. 1 str. 9-941]
gi|82700817|ref|YP_415391.1| tRNA modification GTPase TrmE [Brucella melitensis biovar Abortus
2308]
gi|189025119|ref|YP_001935887.1| tRNA modification GTPase TrmE [Brucella abortus S19]
gi|237816411|ref|ZP_04595404.1| tRNA modification GTPase TrmE [Brucella abortus str. 2308 A]
gi|260546168|ref|ZP_05821908.1| tRNA modification GTPase mnmE [Brucella abortus NCTC 8038]
gi|260755735|ref|ZP_05868083.1| tRNA modification GTPase TrmE [Brucella abortus bv. 6 str. 870]
gi|260758959|ref|ZP_05871307.1| tRNA modification GTPase TrmE [Brucella abortus bv. 4 str. 292]
gi|260760683|ref|ZP_05873026.1| tRNA modification GTPase TrmE [Brucella abortus bv. 2 str. 86/8/59]
gi|260884761|ref|ZP_05896375.1| tRNA modification GTPase mnmE [Brucella abortus bv. 9 str. C68]
gi|297247290|ref|ZP_06931008.1| tRNA modification GTPase TrmE [Brucella abortus bv. 5 str. B3196]
gi|376272222|ref|YP_005150800.1| tRNA modification GTPase TrmE [Brucella abortus A13334]
gi|423167975|ref|ZP_17154678.1| tRNA modification GTPase mnmE [Brucella abortus bv. 1 str. NI435a]
gi|423169649|ref|ZP_17156324.1| tRNA modification GTPase mnmE [Brucella abortus bv. 1 str. NI474]
gi|423175361|ref|ZP_17162030.1| tRNA modification GTPase mnmE [Brucella abortus bv. 1 str. NI486]
gi|423177789|ref|ZP_17164434.1| tRNA modification GTPase mnmE [Brucella abortus bv. 1 str. NI488]
gi|423179082|ref|ZP_17165723.1| tRNA modification GTPase mnmE [Brucella abortus bv. 1 str. NI010]
gi|423182213|ref|ZP_17168850.1| tRNA modification GTPase mnmE [Brucella abortus bv. 1 str. NI016]
gi|423186845|ref|ZP_17173459.1| tRNA modification GTPase mnmE [Brucella abortus bv. 1 str. NI021]
gi|423190719|ref|ZP_17177327.1| tRNA modification GTPase mnmE [Brucella abortus bv. 1 str. NI259]
gi|75496086|sp|Q57AJ6.1|MNME_BRUAB RecName: Full=tRNA modification GTPase MnmE
gi|123547323|sp|Q2YR11.1|MNME_BRUA2 RecName: Full=tRNA modification GTPase MnmE
gi|62197038|gb|AAX75338.1| TrmE, tRNA modification GTPase [Brucella abortus bv. 1 str. 9-941]
gi|82616918|emb|CAJ12019.1| ATP/GTP-binding site motif A (P-loop):Ras GTPase superfamily:tRNA
modification GTPase TrmE:Small GTP-binding protein
domain:G [Brucella melitensis biovar Abortus 2308]
gi|189020691|gb|ACD73413.1| tRNA modification GTPase [Brucella abortus S19]
gi|237788478|gb|EEP62693.1| tRNA modification GTPase TrmE [Brucella abortus str. 2308 A]
gi|260096275|gb|EEW80151.1| tRNA modification GTPase mnmE [Brucella abortus NCTC 8038]
gi|260669277|gb|EEX56217.1| tRNA modification GTPase TrmE [Brucella abortus bv. 4 str. 292]
gi|260671115|gb|EEX57936.1| tRNA modification GTPase TrmE [Brucella abortus bv. 2 str. 86/8/59]
gi|260675843|gb|EEX62664.1| tRNA modification GTPase TrmE [Brucella abortus bv. 6 str. 870]
gi|260874289|gb|EEX81358.1| tRNA modification GTPase mnmE [Brucella abortus bv. 9 str. C68]
gi|297174459|gb|EFH33806.1| tRNA modification GTPase TrmE [Brucella abortus bv. 5 str. B3196]
gi|363399828|gb|AEW16798.1| tRNA modification GTPase TrmE [Brucella abortus A13334]
gi|374535805|gb|EHR07326.1| tRNA modification GTPase mnmE [Brucella abortus bv. 1 str. NI486]
gi|374539724|gb|EHR11227.1| tRNA modification GTPase mnmE [Brucella abortus bv. 1 str. NI435a]
gi|374543328|gb|EHR14811.1| tRNA modification GTPase mnmE [Brucella abortus bv. 1 str. NI474]
gi|374548991|gb|EHR20437.1| tRNA modification GTPase mnmE [Brucella abortus bv. 1 str. NI488]
gi|374552026|gb|EHR23455.1| tRNA modification GTPase mnmE [Brucella abortus bv. 1 str. NI016]
gi|374552398|gb|EHR23826.1| tRNA modification GTPase mnmE [Brucella abortus bv. 1 str. NI010]
gi|374554489|gb|EHR25900.1| tRNA modification GTPase mnmE [Brucella abortus bv. 1 str. NI259]
gi|374557557|gb|EHR28953.1| tRNA modification GTPase mnmE [Brucella abortus bv. 1 str. NI021]
Length = 442
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 132/215 (61%), Gaps = 6/215 (2%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+VIR+SGP T +++ C Q + +PR+A+L + + D GL L+FP P+
Sbjct: 21 SGVAVIRISGPKTRFVYETI-C---QAIPEPRHAALLTFRSRNGDAI-DRGLTLFFPAPH 75
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDC EF +HG AV+ +L L +LPG R AE GEF++RAF N K+DLT E L D
Sbjct: 76 SFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDLTIAEGLAD 135
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI AETE QR+ A+ GN ++LYSEWRQ ++ + A +EA +DF+++ + ++ V
Sbjct: 136 LIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVPGSVSMQVW 195
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA 315
Q+ L IE HI S K +R G+ VI A
Sbjct: 196 QQLSALKHEIEHHIA-SGKRAAMLRDGLHVVIVGA 229
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 72/114 (63%), Gaps = 1/114 (0%)
Query: 315 ASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEP 374
A +EA +DF+++ + ++ V Q+ L IE HI S K +R G+ VIVG P
Sbjct: 172 AFIEAELDFADESDVPGSVSMQVWQQLSALKHEIEHHIA-SGKRAAMLRDGLHVVIVGAP 230
Query: 375 NVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428
N GKSSL+NFL + ++I++ GTTRD++E LD+GG PV + DTAGLR T S
Sbjct: 231 NAGKSSLLNFLAGRDVAIISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDS 284
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFALSSG GV+VIR+SGP T +++ C Q +P+PR+A+L +
Sbjct: 9 DTIFALSSGRLPSGVAVIRISGPKTRFVYETI-C---QAIPEPRHAALLTFRSRNGDAI- 63
Query: 88 DEGLCLWFP 96
D GL L+FP
Sbjct: 64 DRGLTLFFP 72
>gi|407698259|ref|YP_006823047.1| tRNA modification GTPase TrmE [Alcanivorax dieselolei B5]
gi|407255597|gb|AFT72704.1| tRNA modification GTPase TrmE [Alcanivorax dieselolei B5]
Length = 458
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 125/339 (36%), Positives = 171/339 (50%), Gaps = 70/339 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV V+R+SG AL+ A + PR A R D EV+ DEGL L FP
Sbjct: 17 GRGGVGVVRLSGD---GALEIAAGVVGDRPLHPRQAHFRRFRDERGEVI-DEGLVLSFPG 72
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED EFQ HG V++ ++ A G R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 73 PGSFTGEDVVEFQGHGGPVVLDMLVRACL-YHGARQARPGEFSQRAFLNDKLDLAQAEAI 131
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL+ A T+ + AL ++G FSE+ +N
Sbjct: 132 ADLVDAGTQASARAALRSLQGA------------------------FSEE-------VNR 160
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+ Q++QL RI VEA IDF E+EI + L+ R
Sbjct: 161 LVEQLIQL----------------RI-----------YVEAAIDFPEEEI---DFLSDGR 190
Query: 339 --SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+ + L G +++ + + + G +R G+ VI G PN GKSSLMN L +IVT +
Sbjct: 191 VAADLRALLGQLDR-VLATARQGRLVREGLTLVIAGRPNAGKSSLMNRLAGFDAAIVTEV 249
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
PGTTRDV+ + + I G P+ ++DTAGLR + D +E EG
Sbjct: 250 PGTTRDVLRESIQIDGLPLNVIDTAGLR-ESPDRVEQEG 287
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A+++ G+ GV V+R+SG AL+ A + PR A R D +V+
Sbjct: 7 DTIVAIATAPGRGGVGVVRLSGD---GALEIAAGVVGDRPLHPRQAHFRRFRDERGEVI- 62
Query: 88 DEGLCLWFPRHGK-CGVSVIRV---SGPDTLNALKSMACYPDQKVSKPRYASLRNIVD 141
DEGL L FP G G V+ GP L+ L Y + ++P S R ++
Sbjct: 63 DEGLVLSFPGPGSFTGEDVVEFQGHGGPVVLDMLVRACLYHGARQARPGEFSQRAFLN 120
>gi|261215012|ref|ZP_05929293.1| tRNA modification GTPase TrmE [Brucella abortus bv. 3 str. Tulya]
gi|260916619|gb|EEX83480.1| tRNA modification GTPase TrmE [Brucella abortus bv. 3 str. Tulya]
Length = 442
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 132/215 (61%), Gaps = 6/215 (2%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+VIR+SGP T +++ C Q + +PR+A+L + + D GL L+FP P+
Sbjct: 21 SGVAVIRISGPKTRFVYETI-C---QAIPEPRHAALLTFRSRNGDAI-DRGLTLFFPAPH 75
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDC EF +HG AV+ +L L +LPG R AE GEF++RAF N K+DLT E L D
Sbjct: 76 SFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDLTIAEGLAD 135
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI AETE QR+ A+ GN ++LYSEWRQ ++ + A +EA +DF+++ + ++ V
Sbjct: 136 LIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVPGSVSMQVW 195
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA 315
Q+ L IE HI S K +R G+ VI A
Sbjct: 196 QQLSALKHEIEHHIA-SGKRAAMLRDGLHVVIVGA 229
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 72/114 (63%), Gaps = 1/114 (0%)
Query: 315 ASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEP 374
A +EA +DF+++ + ++ V Q+ L IE HI S K +R G+ VIVG P
Sbjct: 172 AFIEAELDFADESDVPGSVSMQVWQQLSALKHEIEHHIA-SGKRAAMLRDGLHVVIVGAP 230
Query: 375 NVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428
N GKSSL+NFL + ++I++ GTTRD++E LD+GG PV + DTAGLR T S
Sbjct: 231 NAGKSSLLNFLAGRDVAIISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDS 284
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFALSSG GV+VIR+SGP T +++ C Q +P+PR+A+L +
Sbjct: 9 DTIFALSSGRLPSGVAVIRISGPKTRFVYETI-C---QAIPEPRHAALLTFRSRNGDAI- 63
Query: 88 DEGLCLWFP 96
D GL L+FP
Sbjct: 64 DRGLTLFFP 72
>gi|345864669|ref|ZP_08816867.1| tRNA modification GTPase MnmE [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345124202|gb|EGW54084.1| tRNA modification GTPase MnmE [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 449
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 123/343 (35%), Positives = 177/343 (51%), Gaps = 79/343 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G GV ++RVSG D +++A K+ +PR AS R D V+ D G+ L+FP
Sbjct: 16 GSGGVGIVRVSGADCKRVAEALAG----KLPQPRLASYRPFHDQDGSVI-DTGILLYFPA 70
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED EFQ HG +++ +L + L G+RPA GEF++RAF N K+DL Q EA+
Sbjct: 71 PHSFTGEDVLEFQAHGGAVILDLLLQRILDL-GIRPARAGEFTERAFLNGKIDLAQAEAV 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI+A T + A ++G ++SE
Sbjct: 130 ADLIEARTVSAARLAGRTLQG----VFSE------------------------------- 154
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI--IED----N 332
++H +E+ IEL RI VE+ IDF E+EI + D N
Sbjct: 155 ------RVHALVEQLIEL------RI-----------YVESAIDFPEEEIDFLSDGRVAN 191
Query: 333 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
L T+ Q+ QL I+ +N G +R G+ VI G PN GKSSL+N L ++ +I
Sbjct: 192 DLKTLTEQLAQL-------IQSAN-TGRLLRDGMTLVIAGRPNAGKSSLLNQLSGEERAI 243
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
VT IPGTTRD++ + + I G P+ ++DTAG+R + D +E EG
Sbjct: 244 VTDIPGTTRDLLREQIQIDGLPLHIIDTAGIR-DSEDPVEIEG 285
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
++TI A+++ G GV ++RVSG D +++A K+P+PR AS R D V+
Sbjct: 5 RDTIAAVATPPGSGGVGIVRVSGADCKRVAEALAG----KLPQPRLASYRPFHDQDGSVI 60
Query: 87 LDEGLCLWFPR-HGKCGVSVI 106
D G+ L+FP H G V+
Sbjct: 61 -DTGILLYFPAPHSFTGEDVL 80
>gi|345876689|ref|ZP_08828454.1| inner membrane protein oxaA [endosymbiont of Riftia pachyptila
(vent Ph05)]
gi|344226289|gb|EGV52627.1| inner membrane protein oxaA [endosymbiont of Riftia pachyptila
(vent Ph05)]
Length = 475
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 123/343 (35%), Positives = 177/343 (51%), Gaps = 79/343 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G GV ++RVSG D +++A K+ +PR AS R D V+ D G+ L+FP
Sbjct: 42 GSGGVGIVRVSGADCKRVAEALAG----KLPQPRLASYRPFHDQDGSVI-DTGILLYFPA 96
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED EFQ HG +++ +L + L G+RPA GEF++RAF N K+DL Q EA+
Sbjct: 97 PHSFTGEDVLEFQAHGGAVILDLLLQRILDL-GIRPARAGEFTERAFLNGKIDLAQAEAV 155
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI+A T + A ++G ++SE
Sbjct: 156 ADLIEARTVSAARLAGRTLQG----VFSE------------------------------- 180
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI--IED----N 332
++H +E+ IEL RI VE+ IDF E+EI + D N
Sbjct: 181 ------RVHALVEQLIEL------RI-----------YVESAIDFPEEEIDFLSDGRVAN 217
Query: 333 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
L T+ Q+ QL I+ +N G +R G+ VI G PN GKSSL+N L ++ +I
Sbjct: 218 DLKTLTEQLAQL-------IQSAN-TGRLLRDGMTLVIAGRPNAGKSSLLNQLSGEERAI 269
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
VT IPGTTRD++ + + I G P+ ++DTAG+R + D +E EG
Sbjct: 270 VTDIPGTTRDLLREQIQIDGLPLHIIDTAGIR-DSEDPVEIEG 311
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
++TI A+++ G GV ++RVSG D +++A K+P+PR AS R D V+
Sbjct: 31 RDTIAAVATPPGSGGVGIVRVSGADCKRVAEALAG----KLPQPRLASYRPFHDQDGSVI 86
Query: 87 LDEGLCLWFPR-HGKCGVSVI 106
D G+ L+FP H G V+
Sbjct: 87 -DTGILLYFPAPHSFTGEDVL 106
>gi|148559809|ref|YP_001259867.1| tRNA modification GTPase TrmE [Brucella ovis ATCC 25840]
gi|294851291|ref|ZP_06791964.1| tRNA modification GTPase TrmE [Brucella sp. NVSL 07-0026]
gi|205829121|sp|A5VT20.1|MNME_BRUO2 RecName: Full=tRNA modification GTPase MnmE
gi|148371066|gb|ABQ61045.1| tRNA modification GTPase TrmE [Brucella ovis ATCC 25840]
gi|294819880|gb|EFG36879.1| tRNA modification GTPase TrmE [Brucella sp. NVSL 07-0026]
Length = 442
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 131/215 (60%), Gaps = 6/215 (2%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+VIR+SGP T +++ Q + +PR+A+L + + D GL L+FP P+
Sbjct: 21 SGVAVIRISGPKTRFVYETI----RQAIPEPRHAALLTFRSRNGDAI-DRGLTLFFPAPH 75
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDC EF +HG AV+ +L L +LPG R AE GEF++RAF N K+DLT E L D
Sbjct: 76 SFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDLTIAEGLAD 135
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI AETE QR+ A+ GN ++LYSEWRQ ++ + A +EA +DF+++ + ++ V
Sbjct: 136 LIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVPGSVSMQVW 195
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA 315
Q+ L IE HI S K +R G+ VI A
Sbjct: 196 QQLSALKHEIEHHIA-SGKRAAMLRDGLHVVIVGA 229
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 72/114 (63%), Gaps = 1/114 (0%)
Query: 315 ASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEP 374
A +EA +DF+++ + ++ V Q+ L IE HI S K +R G+ VIVG P
Sbjct: 172 AFIEAELDFADESDVPGSVSMQVWQQLSALKHEIEHHIA-SGKRAAMLRDGLHVVIVGAP 230
Query: 375 NVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428
N GKSSL+NFL + ++I++ GTTRD++E LD+GG PV + DTAGLR T S
Sbjct: 231 NAGKSSLLNFLAGRDVAIISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDS 284
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFALSSG GV+VIR+SGP T +++ Q +P+PR+A+L +
Sbjct: 9 DTIFALSSGRLPSGVAVIRISGPKTRFVYETI----RQAIPEPRHAALLTFRSRNGDAI- 63
Query: 88 DEGLCLWFP 96
D GL L+FP
Sbjct: 64 DRGLTLFFP 72
>gi|75674297|ref|YP_316718.1| tRNA modification GTPase TrmE [Nitrobacter winogradskyi Nb-255]
gi|123614357|sp|Q3SWH5.1|MNME_NITWN RecName: Full=tRNA modification GTPase MnmE
gi|74419167|gb|ABA03366.1| tRNA modification GTPase trmE [Nitrobacter winogradskyi Nb-255]
Length = 456
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 114/336 (33%), Positives = 167/336 (49%), Gaps = 67/336 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
++V+R SG AL+ +A + R A + D V E + D+ + LWFP P
Sbjct: 18 SAIAVVRASGSQAGTALRKLAGA----IPAARTAKRVLLRDSVGEAI-DDAVILWFPAPA 72
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
S TGED EF VHGS AV+NA++ AL+ + R AEPGEF++RAF N K+ D
Sbjct: 73 SATGEDIAEFHVHGSRAVVNALIAALSSIDDARAAEPGEFTRRAFENGKI---------D 123
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
L +AE D++I + R
Sbjct: 124 LTEAE----------------------------------------GLDDLIHADTDRQRR 143
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI-CLASVEAYIDFSEDEIIEDNILNTVRS 339
+ QL G + G R R K +I A +EA IDF+++E + +++
Sbjct: 144 QALRQLQGLL----------GDRARGWRKELIDASALIEAGIDFADEEDVPEDLARPALE 193
Query: 340 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGT 399
++ QL IE+ + S + G R+R G+ I G PN GKS+L+N L +++ +IV+ GT
Sbjct: 194 KIAQLRREIEQTLAASAR-GERLRDGLTVAIAGPPNAGKSTLLNRLARREAAIVSPHAGT 252
Query: 400 TRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TRD+IE +LD+ GYPV L+DTAG+R T D +E EG
Sbjct: 253 TRDIIEVYLDLDGYPVTLIDTAGIR-ETDDPVEQEG 287
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
+ TIFALSSG ++V+R SG AL+ +A +P R A + D V + +
Sbjct: 5 EQTIFALSSGRPPSAIAVVRASGSQAGTALRKLAG----AIPAARTAKRVLLRDSVGEAI 60
Query: 87 LDEGLCLWFP 96
D+ + LWFP
Sbjct: 61 -DDAVILWFP 69
>gi|421217562|ref|ZP_15674463.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070335]
gi|395585048|gb|EJG45440.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070335]
Length = 397
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 169/337 (50%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ ++ + D + +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIVQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + K + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTKLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|17986290|ref|NP_538924.1| tRNA modification GTPase TrmE [Brucella melitensis bv. 1 str. 16M]
gi|225626441|ref|ZP_03784480.1| tRNA modification GTPase TrmE [Brucella ceti str. Cudo]
gi|225853493|ref|YP_002733726.1| tRNA modification GTPase TrmE [Brucella melitensis ATCC 23457]
gi|256263027|ref|ZP_05465559.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 2 str. 63/9]
gi|256370460|ref|YP_003107971.1| tRNA modification GTPase TrmE [Brucella microti CCM 4915]
gi|260562967|ref|ZP_05833453.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 1 str. 16M]
gi|261217881|ref|ZP_05932162.1| tRNA modification GTPase mnmE [Brucella ceti M13/05/1]
gi|261314904|ref|ZP_05954101.1| tRNA modification GTPase mnmE [Brucella pinnipedialis M163/99/10]
gi|261316538|ref|ZP_05955735.1| tRNA modification GTPase mnmE [Brucella pinnipedialis B2/94]
gi|261321269|ref|ZP_05960466.1| tRNA modification GTPase mnmE [Brucella ceti M644/93/1]
gi|261758996|ref|ZP_06002705.1| tRNA modification GTPase mnmE [Brucella sp. F5/99]
gi|265987612|ref|ZP_06100169.1| tRNA modification GTPase mnmE [Brucella pinnipedialis M292/94/1]
gi|265992087|ref|ZP_06104644.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 1 str.
Rev.1]
gi|265993823|ref|ZP_06106380.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 3 str.
Ether]
gi|340791644|ref|YP_004757109.1| tRNA modification GTPase TrmE [Brucella pinnipedialis B2/94]
gi|384212409|ref|YP_005601493.1| tRNA modification GTPase TrmE [Brucella melitensis M5-90]
gi|384409510|ref|YP_005598131.1| tRNA modification GTPase TrmE [Brucella melitensis M28]
gi|81852665|sp|Q8YJS6.1|MNME_BRUME RecName: Full=tRNA modification GTPase MnmE
gi|17981872|gb|AAL51188.1| thiophene and furan oxidation protein thdf [Brucella melitensis bv.
1 str. 16M]
gi|225618098|gb|EEH15141.1| tRNA modification GTPase TrmE [Brucella ceti str. Cudo]
gi|225641858|gb|ACO01772.1| tRNA modification GTPase TrmE [Brucella melitensis ATCC 23457]
gi|256000623|gb|ACU49022.1| tRNA modification GTPase [Brucella microti CCM 4915]
gi|260152983|gb|EEW88075.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 1 str. 16M]
gi|260922970|gb|EEX89538.1| tRNA modification GTPase mnmE [Brucella ceti M13/05/1]
gi|261293959|gb|EEX97455.1| tRNA modification GTPase mnmE [Brucella ceti M644/93/1]
gi|261295761|gb|EEX99257.1| tRNA modification GTPase mnmE [Brucella pinnipedialis B2/94]
gi|261303930|gb|EEY07427.1| tRNA modification GTPase mnmE [Brucella pinnipedialis M163/99/10]
gi|261738980|gb|EEY26976.1| tRNA modification GTPase mnmE [Brucella sp. F5/99]
gi|262764804|gb|EEZ10725.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 3 str.
Ether]
gi|263003153|gb|EEZ15446.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 1 str.
Rev.1]
gi|263092899|gb|EEZ17074.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 2 str. 63/9]
gi|264659809|gb|EEZ30070.1| tRNA modification GTPase mnmE [Brucella pinnipedialis M292/94/1]
gi|326410057|gb|ADZ67122.1| tRNA modification GTPase TrmE [Brucella melitensis M28]
gi|326539774|gb|ADZ87989.1| tRNA modification GTPase TrmE [Brucella melitensis M5-90]
gi|340560103|gb|AEK55341.1| tRNA modification GTPase TrmE [Brucella pinnipedialis B2/94]
Length = 442
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 132/215 (61%), Gaps = 6/215 (2%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+VIR+SGP T +++ C Q + +PR+A+L + + D GL L+FP P+
Sbjct: 21 SGVAVIRISGPKTRFVYETI-C---QAIPEPRHAALLTFRSRNGDAI-DRGLTLFFPAPH 75
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDC EF +HG AV+ +L L +LPG R AE GEF++RAF N K+DLT E L D
Sbjct: 76 SFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDLTIAEGLAD 135
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI AETE QR+ A+ GN ++LYSEWRQ ++ + A +EA +DF+++ + ++ V
Sbjct: 136 LIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVPGSVSMQVW 195
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA 315
Q+ L IE HI S K +R G+ VI A
Sbjct: 196 QQLSALKHEIEHHIA-SGKRAAMLRDGLHVVIVGA 229
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 72/114 (63%), Gaps = 1/114 (0%)
Query: 315 ASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEP 374
A +EA +DF+++ + ++ V Q+ L IE HI S K +R G+ VIVG P
Sbjct: 172 AFIEAELDFADESDVPGSVSMQVWQQLSALKHEIEHHIA-SGKRAAMLRDGLHVVIVGAP 230
Query: 375 NVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428
N GKSSL+NFL + ++I++ GTTRD++E LD+GG PV + DTAGLR T S
Sbjct: 231 NAGKSSLLNFLAGRDVAIISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDS 284
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFALSSG GV+VIR+SGP T +++ C Q +P+PR+A+L +
Sbjct: 9 DTIFALSSGRLPSGVAVIRISGPKTRFVYETI-C---QAIPEPRHAALLTFRSRNGDAI- 63
Query: 88 DEGLCLWFP 96
D GL L+FP
Sbjct: 64 DRGLTLFFP 72
>gi|23502910|ref|NP_699037.1| tRNA modification GTPase TrmE [Brucella suis 1330]
gi|260567467|ref|ZP_05837937.1| tRNA modification GTPase mnmE [Brucella suis bv. 4 str. 40]
gi|261755767|ref|ZP_05999476.1| tRNA modification GTPase mnmE [Brucella suis bv. 3 str. 686]
gi|376281705|ref|YP_005155711.1| tRNA modification GTPase TrmE [Brucella suis VBI22]
gi|384225697|ref|YP_005616861.1| tRNA modification GTPase TrmE [Brucella suis 1330]
gi|81741537|sp|Q8CY34.1|MNME_BRUSU RecName: Full=tRNA modification GTPase MnmE
gi|23348942|gb|AAN30952.1| tRNA modification GTPase TrmE [Brucella suis 1330]
gi|260156985|gb|EEW92065.1| tRNA modification GTPase mnmE [Brucella suis bv. 4 str. 40]
gi|261745520|gb|EEY33446.1| tRNA modification GTPase mnmE [Brucella suis bv. 3 str. 686]
gi|343383877|gb|AEM19369.1| tRNA modification GTPase TrmE [Brucella suis 1330]
gi|358259304|gb|AEU07039.1| tRNA modification GTPase TrmE [Brucella suis VBI22]
Length = 442
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 132/215 (61%), Gaps = 6/215 (2%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+VIR+SGP T +++ C Q + +PR+A+L + + D GL L+FP P+
Sbjct: 21 SGVAVIRISGPKTRFVYETI-C---QAIPEPRHAALLTFRSRNGDAI-DRGLTLFFPAPH 75
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDC EF +HG AV+ +L L +LPG R AE GEF++RAF N K+DLT E L D
Sbjct: 76 SFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDLTIAEGLAD 135
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI AETE QR+ A+ GN ++LYSEWRQ ++ + A +EA +DF+++ + ++ V
Sbjct: 136 LIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVPGSVSMQVW 195
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA 315
Q+ L IE HI S K +R G+ VI A
Sbjct: 196 QQLSALKHEIEHHIA-SGKRAAMLRDGLHVVIVGA 229
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 72/114 (63%), Gaps = 1/114 (0%)
Query: 315 ASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEP 374
A +EA +DF+++ + ++ V Q+ L IE HI S K +R G+ VIVG P
Sbjct: 172 AFIEAELDFADESDVPGSVSMQVWQQLSALKHEIEHHIA-SGKRAAMLRDGLHVVIVGAP 230
Query: 375 NVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428
N GKSSL+NFL + ++I++ GTTRD++E LD+GG PV + DTAGLR T S
Sbjct: 231 NAGKSSLLNFLAGRDVAIISKEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDS 284
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFALSSG GV+VIR+SGP T +++ C Q +P+PR+A+L +
Sbjct: 9 DTIFALSSGRLPSGVAVIRISGPKTRFVYETI-C---QAIPEPRHAALLTFRSRNGDAI- 63
Query: 88 DEGLCLWFP 96
D GL L+FP
Sbjct: 64 DRGLTLFFP 72
>gi|392552758|ref|ZP_10299895.1| tRNA modification GTPase TrmE [Pseudoalteromonas spongiae
UST010723-006]
Length = 454
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 117/341 (34%), Positives = 171/341 (50%), Gaps = 74/341 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV +IRVSG + + + K KPRYA + + + LD+G+ L+F
Sbjct: 15 GKGGVGIIRVSGKLSQQVAEKVLG----KCPKPRYADYLSF-NTLQGEQLDQGIALYFKG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +I+ +L +T++ G+R A+PGEFS+RAF N+K+DLTQ EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVIIDMLLREITQIDGVRLAKPGEFSERAFLNDKMDLTQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D +I N
Sbjct: 130 AD-------------------------------------------------LINANSEQA 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICL-ASVEAYIDFSEDEI---IEDNIL 334
+S + L G KHI+ + ++ VI L VEA IDF ++EI + +
Sbjct: 141 AKSALHSLQGQFSKHID----------TLVEQVIHLRMYVEAAIDFPDEEIDFLSDGKVA 190
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
N + + + QL ++ K G +R G++ VI G PN GKSSL+N L ++ +IVT
Sbjct: 191 NDLNAIIEQL-----DNVTAQAKQGAIMREGMRVVIAGRPNAGKSSLLNALAGREAAIVT 245
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I GTTRDV+ +H+DI G P+ ++DTAGLR + D++E G
Sbjct: 246 DIAGTTRDVLREHIDIDGMPLHIIDTAGLR-ESPDVVEQIG 285
>gi|295697832|ref|YP_003591070.1| tRNA modification GTPase TrmE [Kyrpidia tusciae DSM 2912]
gi|295413434|gb|ADG07926.1| tRNA modification GTPase TrmE [Kyrpidia tusciae DSM 2912]
Length = 461
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 112/333 (33%), Positives = 174/333 (52%), Gaps = 62/333 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRN-IVDPVSEVVLDEGLCLWFP 157
G+ G++VIRVSGP ++ + P + + +VDP + VLDE L +
Sbjct: 17 GEAGIAVIRVSGPGCARVVERIFRGRQSLQDAPSHRMVYGAVVDPDTAEVLDEVLAVRMQ 76
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P S+TGED E HG AV+ +L A+ + G RPAEPGEF+KRAF N +LDL+Q EA
Sbjct: 77 APRSYTGEDVVEIHTHGGSAVVGRVLNAVVR-AGARPAEPGEFTKRAFLNGRLDLSQAEA 135
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DLI+++T+ R+L LE
Sbjct: 136 VIDLIRSKTDAA-------------------RRLALE----------------------- 153
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
QL G + ++ ++R + V +A +E ID+ E ++ ED + +
Sbjct: 154 -------QLKGGLSTRVK-------QMREILLDV--MAQIEVTIDYPEHDV-EDVTIEQI 196
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
R V Q+ I++ + S++ G +R G+++ IVG PNVGKSSL+N L ++ +IVT+IP
Sbjct: 197 REAVDQVREQIDELLA-SSRVGRLVREGVRTAIVGRPNVGKSSLLNALAGRERAIVTAIP 255
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRDV+++ + + G +LDTAG+RTT ++
Sbjct: 256 GTTRDVVDEWIHVRGVAFQILDTAGIRTTEDEV 288
>gi|119773150|ref|YP_925890.1| tRNA modification GTPase TrmE [Shewanella amazonensis SB2B]
gi|166234819|sp|A1S1G4.1|MNME_SHEAM RecName: Full=tRNA modification GTPase MnmE
gi|119765650|gb|ABL98220.1| tRNA modification GTPase TrmE [Shewanella amazonensis SB2B]
Length = 453
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 171/335 (51%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSG + ++ + + KPRYA + V+D+G+ L+F
Sbjct: 14 GRGGVGIIRVSGKLASDVAHTLLGH----LPKPRYADFCDF-KAADGSVIDQGIALFFKG 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ ++ A+ K+ G+R A PGEFS++AF N+KLDLTQ EA+
Sbjct: 69 PNSFTGEDVLELQGHGGQVVMDMLIRAVLKVKGVRIARPGEFSEQAFMNDKLDLTQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E K L L E+
Sbjct: 129 ADLIDATSE-------QAAKSALHSLQGEFS----------------------------- 152
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI---IEDNILN 335
Q+H ++K ++N +R+ VEA IDF ++E+ + I
Sbjct: 153 -----TQVHTLVDK---ITN---LRLY-----------VEAAIDFPDEEVDFLSDGKIAA 190
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+ + + QL ++ S K G IR G+K VI G PN GKSSL+N L K+ +IVT
Sbjct: 191 ALYAIIDQL-----DEVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESAIVTD 245
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ + G P+ ++DTAGLR TT ++
Sbjct: 246 IAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDEV 280
>gi|84394513|ref|ZP_00993223.1| tRNA modification GTPase [Vibrio splendidus 12B01]
gi|84374866|gb|EAP91803.1| tRNA modification GTPase [Vibrio splendidus 12B01]
Length = 453
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 167/335 (49%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP +A K KPRYA + LD+G+ L+FP
Sbjct: 14 GRGGVGIIRVSGP----LATQVALEVTGKTLKPRYAEYLPFKSD-DGIELDQGIALYFPN 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ ++ + + G+R A PGEFS+RAF N+K+DLTQ EA+
Sbjct: 69 PHSFTGEDVLELQGHGGPVVMDMLIKRILAISGVRAARPGEFSERAFLNDKMDLTQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E
Sbjct: 129 ADLIDASSE-------------------------------------------------EA 139
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
+S + L G K RI + + S+I L VEA IDF E+EI + D ++
Sbjct: 140 AKSALQSLQGEFSK----------RINTLVDSLIYLRIYVEAAIDFPEEEIDFLADGKVS 189
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
T ++ ++E + +N+ G +R G+K VI G PN GKSSL+N L K+ +IVT
Sbjct: 190 TDLQAIID---NLEAVRQEANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTD 245
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 246 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 280
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP +A K KPRYA + L
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGP----LATQVALEVTGKTLKPRYAEYLPFKSD-DGIEL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALYFPNPHSFTGEDVLELQG 82
>gi|58039527|ref|YP_191491.1| tRNA modification GTPase TrmE [Gluconobacter oxydans 621H]
gi|81819099|sp|Q5FS11.1|MNME_GLUOX RecName: Full=tRNA modification GTPase MnmE
gi|58001941|gb|AAW60835.1| tRNA modification GTPase [Gluconobacter oxydans 621H]
Length = 437
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 169/336 (50%), Gaps = 68/336 (20%)
Query: 100 KCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKP 159
+ ++++R SGP + LK++ C + ++ PR SLR + + VLD + LW P P
Sbjct: 26 RAAIAIMRASGPGSDAILKAL-C--NGRLPAPRRVSLRTLRH--NGEVLDHAVALWLPGP 80
Query: 160 NSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALG 219
NS+TGED E +H A+I I ALT L G RPAEPGEF++RA +LDL Q EA+
Sbjct: 81 NSYTGEDGFELHLHAGPAIIARIADALTDL-GARPAEPGEFTRRAVQKGRLDLLQAEAIA 139
Query: 220 DLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTV 279
DL+ AETE QR++AL Q G L +L Y D+++
Sbjct: 140 DLVDAETESQRKQALRQADGALSRL-----------------YDDWAQ------------ 170
Query: 280 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRS 339
R+R + LA EA IDF ++E+ +D + + +
Sbjct: 171 -----------------------RLR------LVLAHQEALIDFPDEELPQD-VEDGLIE 200
Query: 340 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGT 399
++ +L + H L + G +R G+ VI G PNVGKSSL+N L +IVT GT
Sbjct: 201 ELSKLQTEMSAH--LQDNRGELMRQGLTVVIAGSPNVGKSSLLNALSGTDAAIVTHRAGT 258
Query: 400 TRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TRD I + G + L+DTAGLR T D IE EG
Sbjct: 259 TRDAIALDWVLDGVRLRLIDTAGLR-ETEDEIEAEG 293
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 13/120 (10%)
Query: 30 IFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDE 89
IFAL++G + ++++R SGP + LK++ C + ++P PR SLR + + VLD
Sbjct: 17 IFALATGPSRAAIAIMRASGPGSDAILKAL-C--NGRLPAPRRVSLRTLRH--NGEVLDH 71
Query: 90 GLCLWFP----RHGKCGVSVIRVSGPDTL----NALKSMACYPDQKVSKPRYASLRNIVD 141
+ LW P G+ G + +GP + +AL + P + R A + +D
Sbjct: 72 AVALWLPGPNSYTGEDGFELHLHAGPAIIARIADALTDLGARPAEPGEFTRRAVQKGRLD 131
>gi|418166801|ref|ZP_12803457.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17971]
gi|353830397|gb|EHE10527.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17971]
Length = 457
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 169/337 (50%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ ++ + D + +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIVQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + K + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTKLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|238759577|ref|ZP_04620739.1| tRNA modification GTPase mnmE [Yersinia aldovae ATCC 35236]
gi|238702236|gb|EEP94791.1| tRNA modification GTPase mnmE [Yersinia aldovae ATCC 35236]
Length = 454
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 122/352 (34%), Positives = 174/352 (49%), Gaps = 75/352 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG A ++A K+ KPRYA D V LD+G+ L+FP
Sbjct: 15 GRGGVGILRVSG----RAAATVAQAVLGKLPKPRYADYLPFKD-VDGSTLDQGIALYFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LP LR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILALPELRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
RS V L G+ VRI ++++ L VEA IDF ++EI + D
Sbjct: 141 ARSAVNSLQGAFS----------VRIHQLVEALTHLRIYVEAAIDFPDEEIDFLSDG--- 187
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+ Q+ + +E+ + + G +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 188 KIEGQLNGVMAELEQ-VRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 246
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI----IETEGNLLEKNNQ 443
I GTTRDV+ +H+ I G P+ ++DTAGLR ++ IE N +E+ ++
Sbjct: 247 IAGTTRDVLREHIHIDGMPLHIIDTAGLREAGDEVERIGIERAWNEIEQADR 298
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
++ +TI A ++ G+ GV ++RVSG A ++A K+PKPRYA D V
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRVSG----RAAATVAQAVLGKLPKPRYADYLPFKD-VD 55
Query: 84 KVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRN 138
LD+G+ L+FP + G V+ + GP L+ LK + P+ ++++P S R
Sbjct: 56 GSTLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPELRIARPGEFSERA 115
Query: 139 IVD 141
++
Sbjct: 116 FLN 118
>gi|238783044|ref|ZP_04627071.1| tRNA modification GTPase mnmE [Yersinia bercovieri ATCC 43970]
gi|238716045|gb|EEQ08030.1| tRNA modification GTPase mnmE [Yersinia bercovieri ATCC 43970]
Length = 482
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 121/352 (34%), Positives = 175/352 (49%), Gaps = 75/352 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG +++ K+ KPRYA D V LD+G+ L+FP
Sbjct: 43 GRGGVGILRVSGRAAAAVAQAVLG----KLPKPRYADYLPFKD-VDGSTLDQGIALYFPG 97
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 98 PNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDLAQAEAI 157
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 158 ADL-----------------------------------------IDASSEQ--------A 168
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
RS V L G+ VRI ++++ L VEA IDF ++EI + D
Sbjct: 169 ARSAVNSLQGAFS----------VRIHQLVEALTHLRIYVEAAIDFPDEEIDFLSDG--- 215
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+ Q+ + +E+ + + G +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 216 KIEGQLNGVMAELEQ-VRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 274
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI----IETEGNLLEKNNQ 443
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++ IE N +E+ ++
Sbjct: 275 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADR 326
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 10/128 (7%)
Query: 19 RRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNI 78
+R ++ +TI A ++ G+ GV ++RVSG +++ K+PKPRYA
Sbjct: 24 KREITMSATDTIVAQATPPGRGGVGILRVSGRAAAAVAQAVLG----KLPKPRYADYLPF 79
Query: 79 VDPVSKVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRY 133
D V LD+G+ L+FP + G V+ + GP L+ LK + P ++++P
Sbjct: 80 KD-VDGSTLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGE 138
Query: 134 ASLRNIVD 141
S R ++
Sbjct: 139 FSERAFLN 146
>gi|332288923|ref|YP_004419775.1| tRNA modification GTPase TrmE [Gallibacterium anatis UMN179]
gi|330431819|gb|AEC16878.1| tRNA modification GTPase TrmE [Gallibacterium anatis UMN179]
Length = 454
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 114/332 (34%), Positives = 171/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSGP + K + K KPR+A+ D + VLD+G+ L+F
Sbjct: 15 GRGGVGILRVSGPLSEQVAKEVLG----KTLKPRFANYLPFKD-IDGSVLDQGIALFFKA 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + ++ G+R A PGEFS++AF N+K+DL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGQVILDLLLKRILQIKGIRLARPGEFSEQAFLNDKIDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E Q A +K + ++ QL+ DE+I
Sbjct: 130 ADLIDASSE---QAARSALKSLQGEFSTKVHQLV---------------DELI------- 164
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+R+ +++ I E IDF D IE + LN +
Sbjct: 165 ------------------------YLRTYVEAAIDFPDEE--IDFLADGKIEAH-LNQII 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++V + ++ K G +R G+K VI G PN GKSSL+N L + +IVT I G
Sbjct: 198 AKVAE--------VQSQAKQGSLLREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ + G P+ ++DTAGLRT T ++
Sbjct: 250 TTRDVLREHIHLDGMPLHIIDTAGLRTATDEV 281
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
K TI A ++ G+ GV ++RVSGP + K + K KPR+A+ D + V
Sbjct: 4 KETIVAQATPPGRGGVGILRVSGPLSEQVAKEVLG----KTLKPRFANYLPFKD-IDGSV 58
Query: 87 LDEGLCLWF 95
LD+G+ L+F
Sbjct: 59 LDQGIALFF 67
>gi|319406398|emb|CBI80039.1| tRNA modification GTPase [Bartonella sp. AR 15-3]
Length = 435
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 160/330 (48%), Gaps = 66/330 (20%)
Query: 102 GVSVIRVSGPDTLNALKSM-ACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+++R+SGP N +K++ C P K R +++ LD L ++FP P+
Sbjct: 15 GVAIVRLSGPQVRNIVKTLCGCLP-----KARLMHYGDLI-ARDGSFLDSALTVFFPAPH 68
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDC EF +HGS AV+N L R AE GEFS+RAF KLDL Q E+L D
Sbjct: 69 SFTGEDCAEFHLHGSKAVVNRFFDELITFENCRLAEAGEFSRRAFVEGKLDLIQAESLAD 128
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LIQAETE QR+ A+ G L +LY +WRQ ++ + A +EA +DFS++ I +++ V
Sbjct: 129 LIQAETESQRRLAIIGTNGTLTKLYRDWRQRLITARALIEAELDFSDESDIPNSVSGKVW 188
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
+ +L S+ +HI + + + GI+ I A
Sbjct: 189 QDIEKLRDSLYEHISAGERASI-LNDGIRIAIVGAP------------------------ 223
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
CG KS I+ N L + I+IV+ GTT
Sbjct: 224 ----------------NCG-------KSSII-----------NRLSGRSIAIVSEEEGTT 249
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
RD +E L +GG PV DTAGLR T + I
Sbjct: 250 RDALEVRLILGGLPVFFTDTAGLRETENKI 279
>gi|161619976|ref|YP_001593863.1| tRNA modification GTPase TrmE [Brucella canis ATCC 23365]
gi|376275352|ref|YP_005115791.1| tRNA modification GTPase TrmE [Brucella canis HSK A52141]
gi|205829120|sp|A9M9E5.1|MNME_BRUC2 RecName: Full=tRNA modification GTPase MnmE
gi|161336787|gb|ABX63092.1| tRNA modification GTPase TrmE [Brucella canis ATCC 23365]
gi|363403919|gb|AEW14214.1| tRNA modification GTPase TrmE [Brucella canis HSK A52141]
Length = 442
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 132/215 (61%), Gaps = 6/215 (2%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+VIR+SGP T +++ C Q + +PR+A+L + + D GL L+FP P+
Sbjct: 21 SGVAVIRISGPKTRFVYETI-C---QAIPEPRHAALLTFRSRNGDAI-DRGLILFFPAPH 75
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDC EF +HG AV+ +L L +LPG R AE GEF++RAF N K+DLT E L D
Sbjct: 76 SFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDLTIAEGLAD 135
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI AETE QR+ A+ GN ++LYSEWRQ ++ + A +EA +DF+++ + ++ V
Sbjct: 136 LIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVPGSVSMQVW 195
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA 315
Q+ L IE HI S K +R G+ VI A
Sbjct: 196 QQLSALKHEIEHHIA-SGKRAAMLRDGLHVVIVGA 229
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 72/114 (63%), Gaps = 1/114 (0%)
Query: 315 ASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEP 374
A +EA +DF+++ + ++ V Q+ L IE HI S K +R G+ VIVG P
Sbjct: 172 AFIEAELDFADESDVPGSVSMQVWQQLSALKHEIEHHIA-SGKRAAMLRDGLHVVIVGAP 230
Query: 375 NVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428
N GKSSL+NFL + ++I++ GTTRD++E LD+GG PV + DTAGLR T S
Sbjct: 231 NAGKSSLLNFLAGRDVAIISKEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDS 284
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFALSSG GV+VIR+SGP T +++ C Q +P+PR+A+L +
Sbjct: 9 DTIFALSSGRLPSGVAVIRISGPKTRFVYETI-C---QAIPEPRHAALLTFRSRNGDAI- 63
Query: 88 DEGLCLWFP 96
D GL L+FP
Sbjct: 64 DRGLILFFP 72
>gi|367011000|ref|XP_003680001.1| hypothetical protein TDEL_0B06610 [Torulaspora delbrueckii]
gi|359747659|emb|CCE90790.1| hypothetical protein TDEL_0B06610 [Torulaspora delbrueckii]
Length = 501
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 130/374 (34%), Positives = 182/374 (48%), Gaps = 77/374 (20%)
Query: 71 RYASLRNIVDPVSKVVLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSK 130
RY++L S V L L P + ++V+R+SG + + + K
Sbjct: 17 RYSTL-------STVGLPTIYALSTPPGQRSAIAVVRISGSHSKYIYHKLT--KSKNDPK 67
Query: 131 PRYASLRNIVDPVSEV-VLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL 189
PR ASLR + V + VLD L L+F PN+FTGED E +HG AV + +L A+ +L
Sbjct: 68 PRIASLRKLYSSVDKKGVLDSSLTLFFSSPNTFTGEDILELHLHGGKAVTSCVLKAIEEL 127
Query: 190 PGL------RPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQ 243
L R A PGEFSKRAF N K DLT+ E + DLI AETE Q K L
Sbjct: 128 HDLGSGYNIRYAYPGEFSKRAFQNAKFDLTEIEGIRDLIDAETET-------QRKSALSS 180
Query: 244 LYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVR 303
E R ++ R++++ SN
Sbjct: 181 FNGENRDRFMQ------------------------WRTKII------------SN----- 199
Query: 304 IRSGIKSVICLASVEAYIDFSEDEIIED--NILNTVRSQVVQLHGSIEKHIELSNKCGVR 361
+A + A IDF +D I+D I+ TV S + QL I + I+ + +
Sbjct: 200 ----------VAQLTAIIDFGDDTEIQDIEKIVMTVESNIKQLRNEIREFIKKIERSSI- 248
Query: 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTA 421
+RSGI++V++G PN GKSSL+N + + ISIV+ PGTTRD IE +++ GY VI+ DTA
Sbjct: 249 LRSGIRTVLLGPPNAGKSSLINTISKDDISIVSQTPGTTRDAIEVAINVNGYKVIICDTA 308
Query: 422 GLRTTTSDIIETEG 435
G+R +SD IE G
Sbjct: 309 GIRDGSSDEIEVLG 322
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/319 (32%), Positives = 146/319 (45%), Gaps = 77/319 (24%)
Query: 7 KAAKEKAVIFFSR-RCSHLAIKN--TIFALSSGHG-KCGVSVIRVSGPDTLNALKSMACY 62
+ K A+ FSR R S L+ TI+ALS+ G + ++V+R+SG + +
Sbjct: 3 RVPKVNALFDFSRCRYSTLSTVGLPTIYALSTPPGQRSAIAVVRISGSHSKYIYHKLT-- 60
Query: 63 PDQKVPKPRYASLRNIVDPVSKV-VLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMA 121
+ PKPR ASLR + V K VLD L L+F S P+T
Sbjct: 61 KSKNDPKPRIASLRKLYSSVDKKGVLDSSLTLFF-------------SSPNTF------- 100
Query: 122 CYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINA 181
TGED E +HG AV +
Sbjct: 101 -----------------------------------------TGEDILELHLHGGKAVTSC 119
Query: 182 ILGALTKLPGL------RPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALH 235
+L A+ +L L R A PGEFSKRAF N K DLT+ E + DLI AETE QR+ AL
Sbjct: 120 VLKAIEELHDLGSGYNIRYAYPGEFSKRAFQNAKFDLTEIEGIRDLIDAETETQRKSALS 179
Query: 236 QMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIED--NILNTVRSQVVQLHGSIEKH 293
G + + +WR I+ ++A + A IDF +D I+D I+ TV S + QL I +
Sbjct: 180 SFNGENRDRFMQWRTKIISNVAQLTAIIDFGDDTEIQDIEKIVMTVESNIKQLRNEIREF 239
Query: 294 IELSNKCGVRIRSGIKSVI 312
I+ + + +RSGI++V+
Sbjct: 240 IKKIERSSI-LRSGIRTVL 257
>gi|418146236|ref|ZP_12783018.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13637]
gi|353815032|gb|EHD95254.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13637]
Length = 457
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 169/337 (50%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ ++ + D + +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIVQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + K + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTKLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|322712825|gb|EFZ04398.1| GTPase family protein [Metarhizium anisopliae ARSEF 23]
Length = 505
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 117/318 (36%), Positives = 160/318 (50%), Gaps = 75/318 (23%)
Query: 134 ASLRNIVDPVSEV---VLD-EGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL 189
A++R ++DP S +LD E L L P P + TGE+ E VHG A + A+L A+ K
Sbjct: 22 ATVRTLLDPASNTETNILDVEALLLHLPSPKTVTGEEVLELHVHGGPATVKAVLSAIPKC 81
Query: 190 PG---LRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYS 246
+R AEPGEF+KRAFFN +LDL Q E+LGD + AETE QR+ A+ G L + Y
Sbjct: 82 QASTRIRYAEPGEFTKRAFFNGRLDLAQIESLGDTLDAETEQQRRAAVRGNSGALGRNYE 141
Query: 247 EWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRS 306
+WR Q++Q G IE
Sbjct: 142 DWRH-------------------------------QLLQARGEIE--------------- 155
Query: 307 GIKSVICLASVEAYIDFSEDEIIEDN---ILNTVRSQVVQLHGSIEKHIELSNKCGVRIR 363
A IDFSED+ +++ +L V QV ++ SI+ H EL ++ +R
Sbjct: 156 ------------ALIDFSEDQHFDESQSELLENVARQVAKILRSIDLH-ELGSQRSELLR 202
Query: 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGL 423
+GI+ +VG PN GKSSLMN + ++ SIV+ GTTRD++E LDI G+ DTAG
Sbjct: 203 NGIRIALVGPPNAGKSSLMNIIVGREASIVSGEAGTTRDIVEASLDIRGFLCSFADTAGF 262
Query: 424 R--TTTSD----IIETEG 435
R T TSD +E EG
Sbjct: 263 RSKTETSDEVIGAVEEEG 280
>gi|449017177|dbj|BAM80579.1| similar to mitochondrial GTP binding protein trmE [Cyanidioschyzon
merolae strain 10D]
Length = 542
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 107/341 (31%), Positives = 159/341 (46%), Gaps = 60/341 (17%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G ++V R+SGP+T L+++ P QK+ +PR R + DP D G+ +WFP
Sbjct: 80 GTGAIAVFRISGPETRQVLQAVLHVPAQKLPQPRQLVPRTLYDPQRNYAFDRGMVVWFPA 139
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P S+TGED E QVHG+ AVI A L AL PGL PA G F+KRA N K+D +Q EAL
Sbjct: 140 PASYTGEDMAELQVHGAPAVIRAALVALAGYPGLVPATAGAFTKRALTNGKMDRSQVEAL 199
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIE--DNIL 276
+IQA++ A++ ++G L+ + WR + ++A +EA ++F E+ + D L
Sbjct: 200 AHIIQADSLDGLALAVNNLQGALRSQHHSWRAHLHAAMAIMEAVLEFGEEHLAHEIDAQL 259
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
++ + + I L++ G R + I L
Sbjct: 260 EQAAQRIRAVQAEMRMQIRLASPEGQRPELSLTPRIVLYG-------------------- 299
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
R+ +G S+ N + Q++ SIV
Sbjct: 300 ------------------------RVNAGKSSLF------------NLIGQREASIVHET 323
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTT--TSDIIETEG 435
PGTTRDV+E+ I G ++DTAGLR T T+ IE EG
Sbjct: 324 PGTTRDVVEQRAYIDGLAATIMDTAGLRETPQTASAIEAEG 364
>gi|182416744|ref|ZP_02948141.1| tRNA modification GTPase TrmE [Clostridium butyricum 5521]
gi|237669621|ref|ZP_04529599.1| tRNA modification GTPase TrmE [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182379401|gb|EDT76896.1| tRNA modification GTPase TrmE [Clostridium butyricum 5521]
gi|237654855|gb|EEP52417.1| tRNA modification GTPase TrmE [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 460
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 120/351 (34%), Positives = 178/351 (50%), Gaps = 68/351 (19%)
Query: 91 LCLWFPRHGKCGVSVIRVSG------PDTLNALKSMACYPDQKVSKPRYASLRNIVDPVS 144
+C G+ G+++IR+SG D + A KS D K RY + IVD +
Sbjct: 7 ICAIATPIGEGGIAIIRISGEKALEIADKIFAPKSKKDIKDMKTYTMRYGT---IVDLDT 63
Query: 145 EVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRA 204
+ ++D+ + + P S+TGE+ E HG + N +L + K G R AEPGEF+KRA
Sbjct: 64 KDIIDDVILSYMKGPRSYTGENVIEVNCHGGVVATNRVLNQIVK-AGARIAEPGEFTKRA 122
Query: 205 FFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYID 264
F N ++DL+Q EA D+I+A+TEL + A+ Q KG L + E R+ +L LA +E +D
Sbjct: 123 FLNGRIDLSQAEATMDIIKAKTELSMKSAMMQSKGALSKEIGELRKYLLNVLALIEYAVD 182
Query: 265 FSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFS 324
F+ ED+ + Q+ SI K I RI S +K+
Sbjct: 183 FT-----EDDEDIVDDDLIAQIKDSITKTI-------TRINSLLKNA------------D 218
Query: 325 EDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNF 384
E +II D G+ VIVG+PNVGKSSL+N
Sbjct: 219 EGKIIRD---------------------------------GLNIVIVGKPNVGKSSLLNS 245
Query: 385 LCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
L +++ +IVT IPGTTRD+IE+++++ G P+ + DTAG+R T D +E G
Sbjct: 246 LLREKRAIVTDIPGTTRDIIEEYINLDGIPIKITDTAGIR-DTEDTVEKIG 295
>gi|293393716|ref|ZP_06638024.1| tRNA modification GTPase [Serratia odorifera DSM 4582]
gi|291423760|gb|EFE96981.1| tRNA modification GTPase [Serratia odorifera DSM 4582]
Length = 454
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 118/351 (33%), Positives = 172/351 (49%), Gaps = 73/351 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG A + +A K+ KPR+A D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISG----RAAQQVAQTLLGKLPKPRHADYLPFRD-ADGATLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRVLALPGVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS + L G+ I + +R VEA IDF ++EI + L+ +
Sbjct: 141 ARSAMNSLQGAFSSRIHQLVEALTHLR---------IYVEAAIDFPDEEI---DFLSDGK 188
Query: 339 SQVVQLHGSIEK--HIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+ QL+G + + + + G +R G+K VI G PN GKSSL+N L ++ +IVT I
Sbjct: 189 IEA-QLNGVMNDLDSVRVEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDI 247
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI----IETEGNLLEKNNQ 443
GTTRDV+ +H+ I G P+ ++DTAGLR ++ IE N +E+ ++
Sbjct: 248 AGTTRDVLREHIHIDGMPLHIIDTAGLREAGDEVERIGIERAWNEIEQADR 298
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
++ +TI A ++ G+ GV ++R+SG A + +A K+PKPR+A D
Sbjct: 1 MSTSDTIVAQATPPGRGGVGILRISG----RAAQQVAQTLLGKLPKPRHADYLPFRD-AD 55
Query: 84 KVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRN 138
LD+G+ LWFP + G V+ + GP L+ LK + P ++++P S R
Sbjct: 56 GATLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVLALPGVRIARPGEFSERA 115
Query: 139 IVD 141
++
Sbjct: 116 FLN 118
>gi|170729246|ref|YP_001763272.1| tRNA modification GTPase TrmE [Shewanella woodyi ATCC 51908]
gi|205415805|sp|B1KQ64.1|MNME_SHEWM RecName: Full=tRNA modification GTPase MnmE
gi|169814593|gb|ACA89177.1| tRNA modification GTPase TrmE [Shewanella woodyi ATCC 51908]
Length = 453
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 118/341 (34%), Positives = 175/341 (51%), Gaps = 74/341 (21%)
Query: 99 GKCGVSVIRVSGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ GV +IR+SG + A+ + P K RYA + D V+D+G+ L+F
Sbjct: 14 GRGGVGIIRISGDKASDVAMAVLGHLP-----KTRYADYCDFKD-AENAVIDQGIALYFQ 67
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
PNSFTGED E Q HG V++ ++ + ++ G+R A+PGEFS++AF N+K+DLTQ EA
Sbjct: 68 GPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVDGVRIAKPGEFSEQAFMNDKMDLTQAEA 127
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DLI A +E + AL+ ++G +FS
Sbjct: 128 IADLIDATSEQAAKSALNSLQG------------------------EFS----------- 152
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI---IEDNIL 334
VQ+H +E+ L R+ VEA IDF ++E+ + I
Sbjct: 153 ------VQIHELVEQVTNL------RLY-----------VEAAIDFPDEEVDFLSDGKIA 189
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
++ + +L ++ S K G IR G+K VI G PN GKSSL+N L K+ +IVT
Sbjct: 190 GSLNRIITKL-----DSVQASAKQGAIIREGMKVVIAGRPNAGKSSLLNALAGKESAIVT 244
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I GTTRDV+ +H+ + G P+ ++DTAGLR T D +E G
Sbjct: 245 EIAGTTRDVLREHIHLDGMPLHIIDTAGLR-DTDDTVEMIG 284
>gi|432752169|ref|ZP_19986745.1| tRNA modification GTPase mnmE [Escherichia coli KTE29]
gi|431293099|gb|ELF83479.1| tRNA modification GTPase mnmE [Escherichia coli KTE29]
Length = 454
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 161/332 (48%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS + L G+ + + +R +++ I E IDF D IE LN V
Sbjct: 141 ARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE--IDFLSDGKIEAQ-LNDVM 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+++ + + G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 198 AEL--------DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|419448659|ref|ZP_13988656.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 4075-00]
gi|379623717|gb|EHZ88350.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 4075-00]
Length = 457
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 115/337 (34%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +IVDP +E V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKIFKGKDLNKVASHTLNYGHIVDPQTEKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + ++ + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTNLLKTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|302693689|ref|XP_003036523.1| hypothetical protein SCHCODRAFT_48069 [Schizophyllum commune H4-8]
gi|300110220|gb|EFJ01621.1| hypothetical protein SCHCODRAFT_48069 [Schizophyllum commune H4-8]
Length = 520
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 173/335 (51%), Gaps = 62/335 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVS---KPRYASLRNIVDPVSEVVLDEGLCLW 155
G+ G++VIR+SGPD L A + ++ S KP A +V P + +D+GL ++
Sbjct: 71 GRGGIAVIRISGPDALQAWAKLVVLQGRQQSSLPKPWRAYRCRVVHPSHKEPIDDGLAIY 130
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
F P SFT ED E VH A+++++L A++ LP RPAE GEF+KRAF +LDLT
Sbjct: 131 FRGPKSFTTEDVVELHVHSGRAIVSSLLSAISALPFCRPAEAGEFTKRAFLGGRLDLT-- 188
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
QAE LK L ID +E E
Sbjct: 189 -------QAE--------------GLKDL------------------ID-AETEGQRRIA 208
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILN 335
LN R L+ + +++ CLA VEA IDF E + IE+ +L+
Sbjct: 209 LNAARGSNRALYEDLRN----------------RAIHCLAQVEALIDFGEGDDIEEGVLD 252
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
R++ +L S+ +H+ + G +R+G++ + G PN GKSSL+N L Q++ +IVT
Sbjct: 253 QARTEARELLASLHRHLA-DGRRGEIVRAGVRLALFGPPNAGKSSLLNCLAQREAAIVTP 311
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
+PGTTRD++E LD+GG P+ + DTAGLR T ++
Sbjct: 312 VPGTTRDILELGLDLGGLPIRVSDTAGLRATQDEV 346
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 133/316 (42%), Gaps = 84/316 (26%)
Query: 25 AIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQK---VPKPRYASLRNIVDP 81
A + TI+ALS+ G+ G++VIR+SGPD L A + ++ +PKP A +V P
Sbjct: 58 AQRKTIYALSTPPGRGGIAVIRISGPDALQAWAKLVVLQGRQQSSLPKPWRAYRCRVVHP 117
Query: 82 VSKVVLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVD 141
K +D+GL ++F GP + + + V + S R IV
Sbjct: 118 SHKEPIDDGLAIYF-------------RGPKS---------FTTEDVVELHVHSGRAIVS 155
Query: 142 PVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGA---LTKLPGLRPAEPG 198
+ + L F +P + EF A LG LT+ GL+
Sbjct: 156 SLLSAI----SALPFCRP-----AEAGEF-------TKRAFLGGRLDLTQAEGLK----- 194
Query: 199 EFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLAS 258
DL E G QR+ AL+ +G+ + LY + R + LA
Sbjct: 195 ------------DLIDAETEG---------QRRIALNAARGSNRALYEDLRNRAIHCLAQ 233
Query: 259 VEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI------ 312
VEA IDF E + IE+ +L+ R++ +L S+ +H+ + G +R+G++ +
Sbjct: 234 VEALIDFGEGDDIEEGVLDQARTEARELLASLHRHLA-DGRRGEIVRAGVRLALFGPPNA 292
Query: 313 -------CLASVEAYI 321
CLA EA I
Sbjct: 293 GKSSLLNCLAQREAAI 308
>gi|189195158|ref|XP_001933917.1| tRNA modification GTPase mss1, mitochondrial precursor [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187979796|gb|EDU46422.1| tRNA modification GTPase mss1, mitochondrial precursor [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 491
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/310 (35%), Positives = 163/310 (52%), Gaps = 72/310 (23%)
Query: 131 PRYASLRNI----VDPVSEVVLDEG-LCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGA 185
PRYA+LR + + P +LD G L L+FP PN+ TGED E VHG A++ A+L A
Sbjct: 13 PRYATLRKLYAPNLPPSPTTILDSGALVLYFPAPNTVTGEDVLELHVHGGPAIVRAVLAA 72
Query: 186 LTK---LPG--------LRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKAL 234
+ + +PG +R AEPGEF++RAF NN++DL Q E+L + + A TE QR+ ++
Sbjct: 73 IPECATVPGGSAPMRTRIRYAEPGEFTRRAFANNRMDLPQIESLRETLSASTEQQRKLSV 132
Query: 235 HQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHI 294
+L Y WR L+L++ +EA IDFSED+ H
Sbjct: 133 RGTTSSLAARYEHWRMLLLQARGELEALIDFSEDQ-----------------------HF 169
Query: 295 ELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIEL 354
+ S +V+C ASV A +D + ++E ++ N VR ++
Sbjct: 170 DES-----------PAVLC-ASVAAQVD-ALRVLMEAHVANAVRGEL------------- 203
Query: 355 SNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP 414
+R+GI ++G PN GKSSL+N + + +IV+ GTTRDV+E LD+GG+
Sbjct: 204 -------LRNGISVALLGAPNAGKSSLLNRVVGRDAAIVSQEAGTTRDVVEVGLDLGGWL 256
Query: 415 VILLDTAGLR 424
V + D AGLR
Sbjct: 257 VKIGDMAGLR 266
>gi|119382760|ref|YP_913816.1| tRNA modification GTPase TrmE [Paracoccus denitrificans PD1222]
gi|205415788|sp|A1AXX6.1|MNME_PARDP RecName: Full=tRNA modification GTPase MnmE
gi|119372527|gb|ABL68120.1| tRNA modification GTPase trmE [Paracoccus denitrificans PD1222]
Length = 419
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 115/343 (33%), Positives = 175/343 (51%), Gaps = 80/343 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GVSV+R+SGP L+S+A V+ PR A+LR + D + ++D L +WF +
Sbjct: 12 GRGGVSVVRLSGPKAHATLESLAG----PVATPRMAALRALRD--GDDLIDRALVIWFAE 65
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
+SFTGE+ E +HG+ + + + AL GLR AE GEF+KRAF N ++DL + E L
Sbjct: 66 GHSFTGEEVAELHLHGAPVIASRLSQALLA-RGLRRAEAGEFTKRAFLNGRIDLAEAEGL 124
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL+ AETE QR+ A+ +G L + E R +
Sbjct: 125 ADLLSAETEAQRKLAMRATEGELGRKADELRSKL-------------------------- 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIED------N 332
IR+G A +EA IDF+++E+ ++ +
Sbjct: 159 -------------------------IRAG-------ALIEASIDFADEEVPDEVPEEALD 186
Query: 333 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
++ VRS + + + S R+R G + I+G PN GKS+L+N + Q++I++
Sbjct: 187 LIKAVRSDI--------QGMLASYPATERLRQGYEVAIIGPPNAGKSTLLNRIGQREIAL 238
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
V+ I GTTRD++E H D+ G PV LDTAGLR +SD +E G
Sbjct: 239 VSEIAGTTRDILELHTDLRGLPVTFLDTAGLR-ESSDPVEAMG 280
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFA ++ G+ GVSV+R+SGP L+S+A V PR A+LR + D ++
Sbjct: 2 DTIFAEATPPGRGGVSVVRLSGPKAHATLESLAG----PVATPRMAALRALRD--GDDLI 55
Query: 88 DEGLCLWF 95
D L +WF
Sbjct: 56 DRALVIWF 63
>gi|403531135|ref|YP_006665664.1| tRNA modification GTPase TrmE [Bartonella quintana RM-11]
gi|403233206|gb|AFR26949.1| tRNA modification GTPase TrmE [Bartonella quintana RM-11]
Length = 436
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 115/329 (34%), Positives = 162/329 (49%), Gaps = 64/329 (19%)
Query: 102 GVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNS 161
GV+VIR+SGP +N +K++ + + K R+ N+ LD L ++FP P+S
Sbjct: 15 GVAVIRLSGPHVINIVKALCGH----LPKARFMHYGNLT-ARDGSFLDSALTVFFPAPHS 69
Query: 162 FTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDL 221
FTGEDC EF +HGS AV+N L L+ G R AE GEFS+RAF KLDL Q E+L DL
Sbjct: 70 FTGEDCAEFHLHGSKAVVNRFLDELSTFDGCRSAEAGEFSRRAFMEGKLDLIQAESLADL 129
Query: 222 IQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRS 281
I+AETE QR+ A+ G L LY +WR ++++ A +EA +DFS++ + D I + V
Sbjct: 130 IEAETESQRRLAVMGTSGRLTTLYRDWRNRLIKARAFIEAELDFSDEADVSDLISDKVWE 189
Query: 282 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQV 341
V +L SI HI + + +R G+K VI A N+ +S +
Sbjct: 190 DVEELCISIRDHITQGERANI-LRDGLKIVIAGAP------------------NSGKSSI 230
Query: 342 VQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTR 401
+ R KSV + G + R
Sbjct: 231 MN-------------------RLAGKSVAIVMEEAGTT---------------------R 250
Query: 402 DVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
D +E L +GG PV L+DTAGLR T + I
Sbjct: 251 DALEIRLVLGGLPVFLMDTAGLRETENKI 279
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFA+SSG GV+VIR+SGP +N +K++ + +PK R+ N+ L
Sbjct: 2 DTIFAVSSGLLPSGVAVIRLSGPHVINIVKALCGH----LPKARFMHYGNLT-ARDGSFL 56
Query: 88 DEGLCLWFP 96
D L ++FP
Sbjct: 57 DSALTVFFP 65
>gi|328950860|ref|YP_004368195.1| tRNA modification GTPase mnmE [Marinithermus hydrothermalis DSM
14884]
gi|328451184|gb|AEB12085.1| tRNA modification GTPase mnmE [Marinithermus hydrothermalis DSM
14884]
Length = 437
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 118/337 (35%), Positives = 164/337 (48%), Gaps = 65/337 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK + V+R+SGP L + D + S +VDP + VLDEGL L F
Sbjct: 18 GKGAIGVVRLSGPQALEVAARLWRGADPRTLPGGRFSYGRVVDPETGEVLDEGLLLVFRA 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P S+TG+D EFQVHGS AV+ +L A + G RPA PGE++ RA+ N ++DL Q EA+
Sbjct: 78 PRSYTGQDAVEFQVHGSPAVLRRVLEACLQA-GARPANPGEYTLRAYLNGRMDLAQAEAV 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
LI+AE++ R++AL + L Q +L+ LA ++A +D+ E E +E +
Sbjct: 137 LALIEAESDAARRQALRGLSRALSTKIEALAQRLLDLLAHIQALLDYPE-EGVEPHEAER 195
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
V +QV LA +E +L T
Sbjct: 196 VIAQV------------------------------LAEIE-------------RLLATTA 212
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ V HG+ + +VG PN GKSSL+N L +IVT IPG
Sbjct: 213 AGRVAAHGA-------------------RITLVGAPNAGKSSLLNALLGYDRAIVTDIPG 253
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD +E L+IGG PVI +DTAG+R T D +E G
Sbjct: 254 TTRDYLEAPLEIGGVPVIAVDTAGVR-ETEDAVERAG 289
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 25 AIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQK-VPKPRYASLRNIVDPVS 83
++ +TI A+++ GK + V+R+SGP L + D + +P R+ S +VDP +
Sbjct: 5 SLNDTIAAIATPPGKGAIGVVRLSGPQALEVAARLWRGADPRTLPGGRF-SYGRVVDPET 63
Query: 84 KVVLDEGLCLWF 95
VLDEGL L F
Sbjct: 64 GEVLDEGLLLVF 75
>gi|213650174|ref|ZP_03380227.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
Length = 279
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 117/328 (35%), Positives = 163/328 (49%), Gaps = 69/328 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D V LD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-RDVAQEVLGKLPKPRYADYLPFKD-VDGSALDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS + L G+ + + +R VEA IDF ++EI + L+ +
Sbjct: 141 ARSALNSLQGAFSARVNHLVEALTHLR---------IYVEAAIDFPDEEI---DFLSDGK 188
Query: 339 SQVVQLHGSIEK--HIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+ QL+G I + + G +R G+K VI G PN GKSSL+N L ++ +IVT I
Sbjct: 189 IEA-QLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDI 247
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLR 424
GTTRDV+ +H+ I G P+ ++DTAGLR
Sbjct: 248 AGTTRDVLREHIHIDGMPLHIIDTAGLR 275
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D V L
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-RDVAQEVLGKLPKPRYADYLPFKD-VDGSAL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118
>gi|90194070|gb|ABD92596.1| ThdF [Gallibacterium anatis DSM 16844 = F 149]
Length = 436
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 113/332 (34%), Positives = 171/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSGP + K + K KPR+A+ D + VLD+G+ L+F
Sbjct: 4 GRGGVGILRVSGPLSEQVAKEVLG----KTLKPRFANYLPFKD-IDGSVLDQGIALFFKA 58
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + ++ G+R A PGEFS++AF N+K+DL Q EA+
Sbjct: 59 PNSFTGEDVLELQGHGGQVILDLLLKRILQIKGIRLARPGEFSEQAFLNDKIDLAQAEAI 118
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E Q A +K + ++ QL+ DE+I
Sbjct: 119 ADLIDASSE---QAARSALKSLQGEFSTKVHQLV---------------DELI------- 153
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+R+ +++ I E IDF D IE + LN +
Sbjct: 154 ------------------------YLRTYVEAAIDFPDEE--IDFLADGKIEAH-LNQII 186
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++V + ++ K G +R G+K VI G PN GKSSL+N L + +IVT + G
Sbjct: 187 AKVAE--------VQSQAKQGSLLREGMKVVIAGRPNAGKSSLLNALSGRDAAIVTDVAG 238
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ + G P+ ++DTAGLRT T ++
Sbjct: 239 TTRDVLREHIHLDGMPLHIIDTAGLRTATDEV 270
>gi|395780499|ref|ZP_10460961.1| tRNA modification GTPase mnmE [Bartonella washoensis 085-0475]
gi|395418845|gb|EJF85162.1| tRNA modification GTPase mnmE [Bartonella washoensis 085-0475]
Length = 435
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 111/329 (33%), Positives = 158/329 (48%), Gaps = 64/329 (19%)
Query: 102 GVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNS 161
GV+VIR+SGP + +K + + + K R+ N+ LD L ++FP P+S
Sbjct: 15 GVAVIRLSGPHVVRVVKDLCGF----LPKARFMHYGNLT-ARDGSFLDSALTVFFPAPHS 69
Query: 162 FTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDL 221
FTGEDC EF +HG AV+N L L+ G R AE GEFS+RAF KLDL Q EAL DL
Sbjct: 70 FTGEDCAEFHLHGGKAVVNRFLDELSTFEGCRIAEAGEFSRRAFIEGKLDLVQAEALADL 129
Query: 222 IQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRS 281
I+AETE QR+ A+ G L LY +WR ++++ A +EA +DFS++ I + + + +
Sbjct: 130 IEAETESQRRLAVMGTSGRLTTLYRDWRHKLMKARAFIEAELDFSDEADIPNLVSDKIWK 189
Query: 282 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQV 341
V +L S+ +HI + + +R G+K VI A
Sbjct: 190 DVEELSVSLREHISEGERASI-LRDGLKIVIAGAPNSG---------------------- 226
Query: 342 VQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTR 401
+S I + + G P ++IV GTTR
Sbjct: 227 ---------------------KSSIMNRLAGRP---------------VAIVMEEAGTTR 250
Query: 402 DVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
D +E L + G PV L DTAG R T + I
Sbjct: 251 DALEIRLVLSGLPVFLTDTAGFRKTENKI 279
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFA+SSG GV+VIR+SGP + +K + + +PK R+ N+ L
Sbjct: 2 DTIFAVSSGLLPSGVAVIRLSGPHVVRVVKDLCGF----LPKARFMHYGNLT-ARDGSFL 56
Query: 88 DEGLCLWFP 96
D L ++FP
Sbjct: 57 DSALTVFFP 65
>gi|190171192|gb|ACE63666.1| ThdF [Enterobacter cloacae]
Length = 439
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 115/332 (34%), Positives = 163/332 (49%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKDS-DGTPLDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A+PGEFS+RAF N+KLDL Q EA+
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAI 121
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 122 ADL-----------------------------------------IDASSEQ--------A 132
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS + L G+ + + +R +++ I E IDF D IE LN V
Sbjct: 133 ARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE--IDFLSDGKIEAQ-LNDVM 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + + + + G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 190 TDL--------EAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 241
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 TTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 273
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++R+SG L A + +A K+PKPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKDS-DGTPLDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P +++KP S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLN 110
>gi|94312541|ref|YP_585751.1| tRNA modification GTPase TrmE [Cupriavidus metallidurans CH34]
gi|205415800|sp|Q1LH94.1|MNME_RALME RecName: Full=tRNA modification GTPase MnmE
gi|93356393|gb|ABF10482.1| GTPase [Cupriavidus metallidurans CH34]
Length = 475
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 117/342 (34%), Positives = 165/342 (48%), Gaps = 72/342 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ V+RVSGPD + A+ C + +PR+A+ +D V+ D GL L+FP
Sbjct: 16 GRGGIGVVRVSGPD-VGAVMRAVC---GRALQPRHATYLPFLDARGNVI-DHGLALYFPA 70
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILG---ALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
PNS+TGE+ E Q HG V+ +L K GLR AEPGEF++RAF N+KLDL Q
Sbjct: 71 PNSYTGEEVLELQGHGGPVVMQMLLSRCLEAGKDIGLRVAEPGEFTRRAFLNDKLDLAQA 130
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
EA+ DLI+A TE + A M+G + + ++ VEA +DF E+EI
Sbjct: 131 EAVADLIEASTEAAARSAARSMEGEFSKAIHALVEKVIHLRMLVEATLDFPEEEI----- 185
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCG--VRIRSGIKSVICLASVEAYIDFSEDEIIEDNI 333
+E SN G RIR + V+ A
Sbjct: 186 ----------------DFLEASNARGQLTRIREDLAGVLKQA------------------ 211
Query: 334 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIV 393
+ G +R G+ V+ G+PNVGKSSL+N L ++IV
Sbjct: 212 -----------------------RQGSLLREGLSVVLAGQPNVGKSSLLNALAGSDLAIV 248
Query: 394 TSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
T I GTTRD + + + I G P+ ++DTAGLR +D +E G
Sbjct: 249 TPIAGTTRDRVRETIQIDGIPLHIIDTAGLRDDAADEVERIG 290
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 30 IFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDE 89
I A+++ G+ G+ V+RVSGPD + A+ C + +PR+A+ +D V+ D
Sbjct: 8 IAAIATAPGRGGIGVVRVSGPD-VGAVMRAVC---GRALQPRHATYLPFLDARGNVI-DH 62
Query: 90 GLCLWFP 96
GL L+FP
Sbjct: 63 GLALYFP 69
>gi|335028981|ref|ZP_08522494.1| tRNA modification GTPase TrmE [Streptococcus infantis SK1076]
gi|334269682|gb|EGL88096.1| tRNA modification GTPase TrmE [Streptococcus infantis SK1076]
Length = 457
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 116/339 (34%), Positives = 173/339 (51%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + D+ +SK +L +IVDP + V+DE +
Sbjct: 17 GEGAIGIVRLSGSDSFTIAQKI--FRDKDLSKVASHTLNYGHIVDPQTGKVMDEVMVGAM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 KSPKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL
Sbjct: 134 AVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EIL 170
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
NT LA VE ID+ E + +E+
Sbjct: 171 NT-----------------------------------LAQVEVNIDYPEYDDVEEATTAV 195
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+R + ++ + ++ + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 196 IREKTLEFEHLLTNLLKTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 255 AGTTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|423711905|ref|ZP_17686210.1| tRNA modification GTPase mnmE [Bartonella washoensis Sb944nv]
gi|395412753|gb|EJF79233.1| tRNA modification GTPase mnmE [Bartonella washoensis Sb944nv]
Length = 435
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 111/329 (33%), Positives = 158/329 (48%), Gaps = 64/329 (19%)
Query: 102 GVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNS 161
GV+VIR+SGP + +K + + + K R+ N+ LD L ++FP P+S
Sbjct: 15 GVAVIRLSGPHVVRVVKDLCGF----LPKARFMHYGNLT-ARDGSFLDSALTVFFPAPHS 69
Query: 162 FTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDL 221
FTGEDC EF +HG AV+N L L+ G R AE GEFS+RAF KLDL Q EAL DL
Sbjct: 70 FTGEDCAEFHLHGGKAVVNRFLDELSTFEGCRIAEAGEFSRRAFIEGKLDLVQAEALADL 129
Query: 222 IQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRS 281
I+AETE QR+ A+ G L LY +WR ++++ A +EA +DFS++ I + + + +
Sbjct: 130 IEAETESQRRLAVMGTSGRLTTLYRDWRHKLMKARAFIEAELDFSDEADIPNLVSDKIWK 189
Query: 282 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQV 341
V +L S+ +HI + + +R G+K VI A
Sbjct: 190 DVEELSVSLREHISEGERASI-LRDGLKIVIAGAPNSG---------------------- 226
Query: 342 VQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTR 401
+S I + + G P ++IV GTTR
Sbjct: 227 ---------------------KSSIMNRLAGRP---------------VAIVMEEAGTTR 250
Query: 402 DVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
D +E L + G PV L DTAG R T + I
Sbjct: 251 DALEIRLVLSGLPVFLTDTAGFRKTENKI 279
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFA+SSG GV+VIR+SGP + +K + + +PK R+ N+ L
Sbjct: 2 DTIFAVSSGLLPSGVAVIRLSGPHVVRVVKDLCGF----LPKARFMHYGNLT-ARDGSFL 56
Query: 88 DEGLCLWFP 96
D L ++FP
Sbjct: 57 DSALTVFFP 65
>gi|78044593|ref|YP_358878.1| tRNA modification GTPase TrmE [Carboxydothermus hydrogenoformans
Z-2901]
gi|123577255|sp|Q3AG56.1|MNME_CARHZ RecName: Full=tRNA modification GTPase MnmE
gi|77996708|gb|ABB15607.1| tRNA modification GTPase TrmE [Carboxydothermus hydrogenoformans
Z-2901]
Length = 461
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 121/351 (34%), Positives = 174/351 (49%), Gaps = 87/351 (24%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR----NIVDPVSEVVLDEGLCL 154
G+ G+ ++RVSGP + A+K++ P Q + S IVDP ++DE L
Sbjct: 14 GEGGIGIVRVSGPGAIEAVKNV-FIPRQSKDLSKVPSFTLHYGKIVDPADGKIVDEVLVS 72
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
P S+TGED E HG I + +L + K G+R AEPGEF+KRAF N ++DL+Q
Sbjct: 73 VMRAPKSYTGEDVVEINCHGGIVAVEKVLELILK-QGIRLAEPGEFTKRAFLNGRIDLSQ 131
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
EA+ D+I+A+TE + A Q+ G L++
Sbjct: 132 AEAVIDIIRAKTEASLKLAGRQLSGELREK------------------------------ 161
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIE---- 330
+N VR +++ + LA +E ID+ E E E
Sbjct: 162 -INAVRQKIINI---------------------------LAFIEVSIDYPEYEFDEVTPE 193
Query: 331 ------DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNF 384
D I+N VR +L S E+ G +R GI +VI G+PNVGKSSL+N
Sbjct: 194 TALKNIDEIINDVR----RLLSSYER--------GRILREGITAVIAGKPNVGKSSLLNA 241
Query: 385 LCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
L +K+ +IVT IPGTTRDVIE +L++ G PV ++DTAG+R T D++E G
Sbjct: 242 LLRKKRAIVTDIPGTTRDVIEDYLNLKGIPVKIVDTAGIR-ETEDLVEKLG 291
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 135/302 (44%), Gaps = 89/302 (29%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLR----NIVDP 81
+++TI A+S+ G+ G+ ++RVSGP + A+K++ P Q + S IVDP
Sbjct: 2 MEDTIAAISTPLGEGGIGIVRVSGPGAIEAVKNV-FIPRQSKDLSKVPSFTLHYGKIVDP 60
Query: 82 VSKVVLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVD 141
++DE L VSV+R
Sbjct: 61 ADGKIVDEVL-----------VSVMRA--------------------------------- 76
Query: 142 PVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFS 201
PK S+TGED E HG I + +L + K G+R AEPGEF+
Sbjct: 77 ---------------PK--SYTGEDVVEINCHGGIVAVEKVLELILK-QGIRLAEPGEFT 118
Query: 202 KRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEA 261
KRAF N ++DL+Q EA+ D+I+A+TE + A Q+ G L++ + RQ I+ LA +E
Sbjct: 119 KRAFLNGRIDLSQAEAVIDIIRAKTEASLKLAGRQLSGELREKINAVRQKIINILAFIEV 178
Query: 262 YIDFSEDEIIE----------DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSV 311
ID+ E E E D I+N VR +L S E+ G +R GI +V
Sbjct: 179 SIDYPEYEFDEVTPETALKNIDEIINDVR----RLLSSYER--------GRILREGITAV 226
Query: 312 IC 313
I
Sbjct: 227 IA 228
>gi|307133252|ref|YP_003885268.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Dickeya
dadantii 3937]
gi|306530781|gb|ADN00712.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Dickeya
dadantii 3937]
Length = 454
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 113/334 (33%), Positives = 160/334 (47%), Gaps = 69/334 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISGRTAAAVAQAVLG----KLPKPRYADYLPFHD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LP +R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRIVALPDVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI--IEDNILNT 336
RS V L G I + +R VEA IDF ++EI + D +
Sbjct: 141 ARSAVNSLQGVFSTRIHQLVEALTHLR---------IYVEAAIDFPDEEIDFLSDGKIEA 191
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+ + V+ G++ + G +R G+K VI G PN GKSSL+N L + +IVT I
Sbjct: 192 MLNDVIGDLGAVRAE----ARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTDI 247
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 248 AGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 281
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGRTAAAVAQAVLG----KLPKPRYADYLPFHD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + PD ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVALPDVRIARPGEFSERAFLN 118
>gi|422858390|ref|ZP_16905040.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK1057]
gi|327460276|gb|EGF06613.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK1057]
Length = 457
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/339 (33%), Positives = 173/339 (51%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + +SK +L +IVDP ++ +LDE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKI--FKGKNLSKVESHTLNYGHIVDPQNQEILDEVMVGAM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 RSPKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARMAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL
Sbjct: 134 AVMDIIRAKTDKAMNNAVKQLDGSLSDLINNTRQ-----------------------EIL 170
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
NT LA VE ID+ E + +E+
Sbjct: 171 NT-----------------------------------LAQVEVNIDYPEYDDVEEMTTQL 195
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+R + V+ + ++ + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 196 MREKTVEFEALLSNLLDTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 255 EGTTRDVIEEYVNIKGVPLKLIDTAGIR-ETDDLVEQIG 292
>gi|417949542|ref|ZP_12592676.1| tRNA modification GTPase TrmE [Vibrio splendidus ATCC 33789]
gi|342808051|gb|EGU43221.1| tRNA modification GTPase TrmE [Vibrio splendidus ATCC 33789]
Length = 453
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 118/333 (35%), Positives = 169/333 (50%), Gaps = 67/333 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP +A K KPRYA + LD+G+ L+FP
Sbjct: 14 GRGGVGIIRVSGP----LATQVALEVTGKTLKPRYAEYLPF-KSADGIELDQGIALYFPN 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ ++ + + G+R A PGEFS+RAF N+K+DLTQ EA+
Sbjct: 69 PHSFTGEDVLELQGHGGPVVMDMLIKRILGISGVRAARPGEFSERAFLNDKMDLTQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E K L+ L E+ + I NT
Sbjct: 129 ADLIDASSE-------EAAKSALQSLQGEFSKRI------------------------NT 157
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILN-TV 337
+ ++ L RI VEA IDF E+EI D + + V
Sbjct: 158 LVDSLIHL----------------RI-----------YVEAAIDFPEEEI--DFLADGKV 188
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+ + + ++E + +N+ G +R G+K VI G PN GKSSL+N L K+ +IVT I
Sbjct: 189 SADLQAIIDNLEAVRQEANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTDIA 247
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 248 GTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 280
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP +A K KPRYA + L
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGP----LATQVALEVTGKTLKPRYAEYLPF-KSADGIEL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALYFPNPHSFTGEDVLELQG 82
>gi|311281727|ref|YP_003943958.1| tRNA modification GTPase TrmE [Enterobacter cloacae SCF1]
gi|308750922|gb|ADO50674.1| tRNA modification GTPase TrmE [Enterobacter cloacae SCF1]
Length = 454
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/334 (34%), Positives = 165/334 (49%), Gaps = 69/334 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFND-ADGAALDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS + L G+ + + +R VEA IDF ++EI + L+ +
Sbjct: 141 ARSALNSLQGAFSARVNHLVEALTHLR---------IYVEAAIDFPDEEI---DFLSDGK 188
Query: 339 SQVVQLHGSIEK--HIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+ QL+G + + + G +R G+K VI G PN GKSSL+N L ++ +IVT I
Sbjct: 189 IEA-QLNGVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDI 247
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 248 AGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 281
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFND-ADGAAL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|261751202|ref|ZP_05994911.1| tRNA modification GTPase mnmE [Brucella suis bv. 5 str. 513]
gi|261740955|gb|EEY28881.1| tRNA modification GTPase mnmE [Brucella suis bv. 5 str. 513]
Length = 442
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 131/215 (60%), Gaps = 6/215 (2%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+VIR+SGP T +++ C Q + +PR+A L + + D GL L+FP P+
Sbjct: 21 SGVAVIRISGPKTRFVYETI-C---QAIPEPRHAVLLTFRSRNGDAI-DRGLTLFFPAPH 75
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDC EF +HG AV+ +L L +LPG R AE GEF++RAF N K+DLT E L D
Sbjct: 76 SFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDLTIAEGLAD 135
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI AETE QR+ A+ GN ++LYSEWRQ ++ + A +EA +DF+++ + ++ V
Sbjct: 136 LIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVPGSVSMQVW 195
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA 315
Q+ L IE HI S K +R G+ VI A
Sbjct: 196 QQLSALKHEIEHHIA-SGKRAAMLRDGLHVVIVGA 229
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 72/114 (63%), Gaps = 1/114 (0%)
Query: 315 ASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEP 374
A +EA +DF+++ + ++ V Q+ L IE HI S K +R G+ VIVG P
Sbjct: 172 AFIEAELDFADESDVPGSVSMQVWQQLSALKHEIEHHIA-SGKRAAMLRDGLHVVIVGAP 230
Query: 375 NVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428
N GKSSL+NFL + ++I++ GTTRD++E LD+GG PV + DTAGLR T S
Sbjct: 231 NAGKSSLLNFLAGRDVAIISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDS 284
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFALSSG GV+VIR+SGP T +++ C Q +P+PR+A L +
Sbjct: 9 DTIFALSSGRLPSGVAVIRISGPKTRFVYETI-C---QAIPEPRHAVLLTFRSRNGDAI- 63
Query: 88 DEGLCLWFP 96
D GL L+FP
Sbjct: 64 DRGLTLFFP 72
>gi|163844080|ref|YP_001628484.1| tRNA modification GTPase TrmE [Brucella suis ATCC 23445]
gi|205829122|sp|B0CJG2.1|MNME_BRUSI RecName: Full=tRNA modification GTPase MnmE
gi|163674803|gb|ABY38914.1| tRNA modification GTPase TrmE [Brucella suis ATCC 23445]
Length = 442
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 132/214 (61%), Gaps = 6/214 (2%)
Query: 102 GVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNS 161
GV+VIR+SGP T +++ C Q + +PR+A+L + + D GL L+FP P++
Sbjct: 22 GVAVIRISGPKTRFVYETI-C---QAIPEPRHAALLTFRSRNGDAI-DRGLTLFFPAPHT 76
Query: 162 FTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDL 221
FTGEDC EF +HG AV+ +L L +LPG R AE GEF++RAF N K+DLT E L DL
Sbjct: 77 FTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDLTIAEGLADL 136
Query: 222 IQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRS 281
I AETE QR+ A+ GN ++LYSEWRQ ++ + A +EA +DF+++ + ++ V
Sbjct: 137 IAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVPGSVSMQVWQ 196
Query: 282 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA 315
Q+ L IE HI S K +R G+ VI A
Sbjct: 197 QLSALKHEIEYHIA-SGKRAAMLRDGLHVVIVGA 229
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 72/114 (63%), Gaps = 1/114 (0%)
Query: 315 ASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEP 374
A +EA +DF+++ + ++ V Q+ L IE HI S K +R G+ VIVG P
Sbjct: 172 AFIEAELDFADESDVPGSVSMQVWQQLSALKHEIEYHIA-SGKRAAMLRDGLHVVIVGAP 230
Query: 375 NVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428
N GKSSL+NFL + ++I++ GTTRD++E LD+GG PV + DTAGLR T S
Sbjct: 231 NAGKSSLLNFLAGRDVAIISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDS 284
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFALSSG GV+VIR+SGP T +++ C Q +P+PR+A+L +
Sbjct: 9 DTIFALSSGRLPSGVAVIRISGPKTRFVYETI-C---QAIPEPRHAALLTFRSRNGDAI- 63
Query: 88 DEGLCLWFP 96
D GL L+FP
Sbjct: 64 DRGLTLFFP 72
>gi|117918464|ref|YP_867656.1| tRNA modification GTPase TrmE [Shewanella sp. ANA-3]
gi|166991117|sp|A0KR31.1|MNME_SHESA RecName: Full=tRNA modification GTPase MnmE
gi|117610796|gb|ABK46250.1| tRNA modification GTPase TrmE [Shewanella sp. ANA-3]
Length = 453
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 118/341 (34%), Positives = 172/341 (50%), Gaps = 74/341 (21%)
Query: 99 GKCGVSVIRVSGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ GV +IR+SG + A+ + P KPRYA + + +V+ D+G+ L+F
Sbjct: 14 GRGGVGIIRISGDKATDVAMAVLGHLP-----KPRYADYCDFKNASGQVI-DQGIALFFK 67
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
PNSFTGED E Q HG V++ ++ + ++ G+R A+PGEFS++AF N+KLDLTQ EA
Sbjct: 68 GPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVEGIRIAKPGEFSEQAFMNDKLDLTQAEA 127
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DLI A +E K L+ L E+ + + E + V
Sbjct: 128 IADLIDATSE-------QAAKSALQSLQGEFSKEVHELVDQV------------------ 162
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI---IEDNIL 334
H+ L VEA IDF ++E+ + I
Sbjct: 163 --------------THLRLY-------------------VEAAIDFPDEEVDFLSDGKIA 189
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
N + + +L ++ S K G IR G+K VI G PN GKSSL+N L K+ +IVT
Sbjct: 190 NALYKIIDKLSA-----VQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESAIVT 244
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I GTTRDV+ +H+ + G P+ ++DTAGLR TT D +E G
Sbjct: 245 EIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTT-DTVEQIG 284
>gi|419482037|ref|ZP_14021830.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA40563]
gi|379580911|gb|EHZ45800.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA40563]
Length = 457
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + K + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTKLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|116516848|ref|YP_816380.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae D39]
gi|161410748|ref|NP_358514.2| tRNA modification GTPase TrmE [Streptococcus pneumoniae R6]
gi|168491911|ref|ZP_02716054.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC0288-04]
gi|421266038|ref|ZP_15716921.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SPAR27]
gi|421298479|ref|ZP_15749167.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA60080]
gi|32171825|sp|Q8DPZ8.2|MNME_STRR6 RecName: Full=tRNA modification GTPase MnmE
gi|122278734|sp|Q04KR8.1|MNME_STRP2 RecName: Full=tRNA modification GTPase MnmE
gi|116077424|gb|ABJ55144.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae D39]
gi|183573804|gb|EDT94332.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC0288-04]
gi|395868774|gb|EJG79891.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SPAR27]
gi|395902435|gb|EJH13368.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA60080]
Length = 457
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + K + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTKLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|148988468|ref|ZP_01819915.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP6-BS73]
gi|147926149|gb|EDK77223.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP6-BS73]
Length = 457
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKIFKGKDLSQVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + K + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTKLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|410629478|ref|ZP_11340178.1| tRNA modification GTPase mnmE [Glaciecola arctica BSs20135]
gi|410150963|dbj|GAC17045.1| tRNA modification GTPase mnmE [Glaciecola arctica BSs20135]
Length = 460
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 165/330 (50%), Gaps = 69/330 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IR+SG TL + + A K+ + R A D + ++ D+G+ L+F
Sbjct: 21 GRGGVGIIRISG--TLASAAAQAILG--KLPETRKAEYLPFSDTENNLI-DQGIALFFRA 75
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L A+ K+P LR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 76 PNSFTGEDVLELQGHGGQVVLDMLLNAILKIPKLRIARPGEFSERAFLNDKLDLAQAEAI 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E KG L+ L + Q I T
Sbjct: 136 ADLIDASSE-------QAAKGALRSLQGAFSQHI------------------------QT 164
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI--IEDNILNT 336
+ QV+ L VEA IDF ++EI + D +
Sbjct: 165 LVEQVIHLR---------------------------MYVEAAIDFPDEEIDFLSDGKIQK 197
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
++Q ++ + K G +R G++ VI G+PN GKSSL+N L + +IVT I
Sbjct: 198 DLETIIQSFETLRQQ----TKQGALLREGMRVVIAGKPNAGKSSLLNALAGRDAAIVTDI 253
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426
GTTRDV+++H+ I G P+ ++DTAGLR +
Sbjct: 254 AGTTRDVLKEHIHIDGMPLHIIDTAGLRDS 283
>gi|168487704|ref|ZP_02712212.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC1087-00]
gi|169834150|ref|YP_001694460.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae
Hungary19A-6]
gi|225861000|ref|YP_002742509.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae
Taiwan19F-14]
gi|298230463|ref|ZP_06964144.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298255333|ref|ZP_06978919.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298502963|ref|YP_003724903.1| tRNA modification GTP-binding protein TrmE [Streptococcus
pneumoniae TCH8431/19A]
gi|387788201|ref|YP_006253269.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae ST556]
gi|410476574|ref|YP_006743333.1| thiophene and furan oxidation GTP-binding protein ThdF
[Streptococcus pneumoniae gamPNI0373]
gi|417312691|ref|ZP_12099403.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA04375]
gi|417696213|ref|ZP_12345392.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47368]
gi|417698568|ref|ZP_12347740.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41317]
gi|418082944|ref|ZP_12720145.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44288]
gi|418085088|ref|ZP_12722272.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47281]
gi|418091510|ref|ZP_12728653.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44452]
gi|418093964|ref|ZP_12731092.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA49138]
gi|418100850|ref|ZP_12737935.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 7286-06]
gi|418107423|ref|ZP_12744461.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41410]
gi|418109989|ref|ZP_12747014.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA49447]
gi|418119562|ref|ZP_12756514.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA18523]
gi|418141722|ref|ZP_12778535.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13455]
gi|418150489|ref|ZP_12787239.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA14798]
gi|418152876|ref|ZP_12789615.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA16121]
gi|418157373|ref|ZP_12794089.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA16833]
gi|418164462|ref|ZP_12801133.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17371]
gi|418169129|ref|ZP_12805773.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA19077]
gi|418171230|ref|ZP_12807856.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA19451]
gi|418184843|ref|ZP_12821390.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47283]
gi|418196052|ref|ZP_12832531.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47688]
gi|418197846|ref|ZP_12834309.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47778]
gi|418221075|ref|ZP_12847729.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47751]
gi|418223198|ref|ZP_12849839.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 5185-06]
gi|418227721|ref|ZP_12854339.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 3063-00]
gi|419422859|ref|ZP_13963074.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA43264]
gi|419425043|ref|ZP_13965242.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 7533-05]
gi|419426997|ref|ZP_13967180.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 5652-06]
gi|419429177|ref|ZP_13969344.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA11856]
gi|419435889|ref|ZP_13975981.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 8190-05]
gi|419438124|ref|ZP_13978194.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13499]
gi|419444763|ref|ZP_13984778.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA19923]
gi|419446907|ref|ZP_13986912.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 7879-04]
gi|419451359|ref|ZP_13991345.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae EU-NP02]
gi|419453417|ref|ZP_13993390.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae EU-NP03]
gi|419489054|ref|ZP_14028804.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44386]
gi|419501774|ref|ZP_14041459.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47628]
gi|419505948|ref|ZP_14045609.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA49194]
gi|419510643|ref|ZP_14050286.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae NP141]
gi|419518813|ref|ZP_14058420.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA08825]
gi|419528437|ref|ZP_14067979.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17719]
gi|419530375|ref|ZP_14069904.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA40028]
gi|421212887|ref|ZP_15669848.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070108]
gi|421215248|ref|ZP_15672176.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070109]
gi|421272679|ref|ZP_15723523.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SPAR55]
gi|421288235|ref|ZP_15738998.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA58771]
gi|205415808|sp|B1IBH5.1|MNME_STRPI RecName: Full=tRNA modification GTPase MnmE
gi|168996652|gb|ACA37264.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae
Hungary19A-6]
gi|183569534|gb|EDT90062.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC1087-00]
gi|225727603|gb|ACO23454.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae
Taiwan19F-14]
gi|298238558|gb|ADI69689.1| tRNA modification GTP-binding protein TrmE [Streptococcus
pneumoniae TCH8431/19A]
gi|327389399|gb|EGE87744.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA04375]
gi|332200613|gb|EGJ14685.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41317]
gi|332201488|gb|EGJ15558.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47368]
gi|353756857|gb|EHD37456.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44288]
gi|353758783|gb|EHD39371.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47281]
gi|353765188|gb|EHD45735.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44452]
gi|353765312|gb|EHD45857.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA49138]
gi|353771529|gb|EHD52037.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 7286-06]
gi|353779606|gb|EHD60070.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41410]
gi|353782901|gb|EHD63331.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA49447]
gi|353789589|gb|EHD69982.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA18523]
gi|353805973|gb|EHD86247.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13455]
gi|353815621|gb|EHD95836.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA14798]
gi|353817427|gb|EHD97629.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA16121]
gi|353823821|gb|EHE03995.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA16833]
gi|353831474|gb|EHE11602.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17371]
gi|353834971|gb|EHE15067.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA19077]
gi|353835962|gb|EHE16051.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA19451]
gi|353851379|gb|EHE31375.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47283]
gi|353861503|gb|EHE41440.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47688]
gi|353864002|gb|EHE43921.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47778]
gi|353875998|gb|EHE55848.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47751]
gi|353879324|gb|EHE59150.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 5185-06]
gi|353881949|gb|EHE61761.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 3063-00]
gi|379137943|gb|AFC94734.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae ST556]
gi|379538129|gb|EHZ03310.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13499]
gi|379551125|gb|EHZ16220.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA11856]
gi|379564460|gb|EHZ29456.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17719]
gi|379572456|gb|EHZ37413.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA19923]
gi|379573894|gb|EHZ38841.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA40028]
gi|379587385|gb|EHZ52233.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA43264]
gi|379587947|gb|EHZ52794.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44386]
gi|379601009|gb|EHZ65786.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47628]
gi|379607862|gb|EHZ72608.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA49194]
gi|379614447|gb|EHZ79157.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 7879-04]
gi|379615731|gb|EHZ80436.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 8190-05]
gi|379618450|gb|EHZ83125.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 5652-06]
gi|379620372|gb|EHZ85031.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 7533-05]
gi|379623064|gb|EHZ87698.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae EU-NP02]
gi|379627126|gb|EHZ91742.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae EU-NP03]
gi|379632696|gb|EHZ97268.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae NP141]
gi|379641792|gb|EIA06327.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA08825]
gi|395580474|gb|EJG40955.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070108]
gi|395581381|gb|EJG41853.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070109]
gi|395875788|gb|EJG86866.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SPAR55]
gi|395886798|gb|EJG97814.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA58771]
gi|406369519|gb|AFS43209.1| thiophene and furan oxidation GTP-binding protein ThdF
[Streptococcus pneumoniae gamPNI0373]
Length = 457
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + K + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTKLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|419495438|ref|ZP_14035156.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47461]
gi|421303228|ref|ZP_15753892.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17484]
gi|379595520|gb|EHZ60328.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47461]
gi|395901850|gb|EJH12786.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17484]
Length = 457
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + K + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTKLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|149003876|ref|ZP_01828699.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP14-BS69]
gi|237650073|ref|ZP_04524325.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CCRI 1974]
gi|237822158|ref|ZP_04598003.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CCRI
1974M2]
gi|387757394|ref|YP_006064373.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae OXC141]
gi|418076122|ref|ZP_12713361.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47502]
gi|418143834|ref|ZP_12780634.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13494]
gi|418232084|ref|ZP_12858671.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA07228]
gi|418236524|ref|ZP_12863092.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA19690]
gi|419457398|ref|ZP_13997343.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA02254]
gi|419479843|ref|ZP_14019650.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA19101]
gi|419499535|ref|ZP_14039233.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47597]
gi|421206472|ref|ZP_15663532.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2090008]
gi|421229664|ref|ZP_15686335.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2061376]
gi|421291890|ref|ZP_15742628.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA56348]
gi|421311825|ref|ZP_15762430.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA58981]
gi|147758106|gb|EDK65110.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP14-BS69]
gi|301799983|emb|CBW32573.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae OXC141]
gi|353749911|gb|EHD30554.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47502]
gi|353809575|gb|EHD89835.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13494]
gi|353886811|gb|EHE66591.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA07228]
gi|353892756|gb|EHE72504.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA19690]
gi|379532396|gb|EHY97625.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA02254]
gi|379571009|gb|EHZ35968.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA19101]
gi|379601423|gb|EHZ66197.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47597]
gi|395576111|gb|EJG36669.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2090008]
gi|395596072|gb|EJG56295.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2061376]
gi|395894107|gb|EJH05088.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA56348]
gi|395911214|gb|EJH22082.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA58981]
gi|429319363|emb|CCP32625.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SPN034183]
gi|429321179|emb|CCP34599.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SPN994039]
gi|429322999|emb|CCP30640.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SPN994038]
Length = 457
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + K + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTKLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|405761134|ref|YP_006701730.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SPNA45]
gi|404278023|emb|CCM08597.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SPNA45]
Length = 457
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + K + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTKLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|254504318|ref|ZP_05116469.1| putative GTPase [Labrenzia alexandrii DFL-11]
gi|222440389|gb|EEE47068.1| putative GTPase [Labrenzia alexandrii DFL-11]
Length = 405
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 107/304 (35%), Positives = 153/304 (50%), Gaps = 68/304 (22%)
Query: 136 LRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPA 195
L + DP S+ ++D+ L L+F P SFTGED EFQ HG AV+ A+L L + P RPA
Sbjct: 2 LSRLRDPASQEIIDQALVLFFEGPASFTGEDVVEFQCHGGRAVVAAMLRILGEFPNCRPA 61
Query: 196 EPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILES 255
EPGEF++RAF +
Sbjct: 62 EPGEFTRRAFDRGR---------------------------------------------- 75
Query: 256 LASVEAYIDFSEDEIIEDNILNTVRSQ----VVQLHGSIEKHIELSNKCGVRIRSGIKSV 311
+D +E E + D I SQ V Q+ G++ E K + +R
Sbjct: 76 -------MDLTEVEGLADLIAAETESQRKQAVRQMGGALGSLYEDWRKRLIHMR------ 122
Query: 312 ICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIV 371
A +EA DF+++E + ++ + V + L + +H+E S + G R+RSG++ V++
Sbjct: 123 ---AMIEADFDFADEEDVPGSVADEVWKEAATLQSEVTRHLEQS-RSGERLRSGLQVVLM 178
Query: 372 GEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDII 431
G PN GKSSL+N + + ++IVT GTTRDVIE HLD+GGYPV L+DTAGLR T I+
Sbjct: 179 GAPNAGKSSLLNAIAGRDVAIVTEEAGTTRDVIEVHLDLGGYPVTLVDTAGLRETDG-IV 237
Query: 432 ETEG 435
E EG
Sbjct: 238 EREG 241
>gi|149019612|ref|ZP_01834931.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP23-BS72]
gi|387626368|ref|YP_006062543.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae INV104]
gi|417693942|ref|ZP_12343130.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47901]
gi|418102879|ref|ZP_12739953.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae NP070]
gi|418189253|ref|ZP_12825768.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47373]
gi|419475409|ref|ZP_14015249.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA14688]
gi|419486566|ref|ZP_14026331.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44128]
gi|421208837|ref|ZP_15665858.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070005]
gi|421224886|ref|ZP_15681629.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070768]
gi|421240573|ref|ZP_15697119.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2080913]
gi|147930987|gb|EDK81967.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP23-BS72]
gi|301794153|emb|CBW36563.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae INV104]
gi|332202879|gb|EGJ16947.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47901]
gi|353775512|gb|EHD55992.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae NP070]
gi|353856395|gb|EHE36364.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47373]
gi|379560954|gb|EHZ25975.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA14688]
gi|379587199|gb|EHZ52048.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44128]
gi|395575175|gb|EJG35745.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070005]
gi|395590364|gb|EJG50671.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070768]
gi|395608364|gb|EJG68458.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2080913]
Length = 457
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + K + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTKLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|402226452|gb|EJU06512.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 496
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 117/341 (34%), Positives = 172/341 (50%), Gaps = 64/341 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR----NIVDPVSEVVLDEGLCL 154
GK GV+V+RVSGP + K++ + K R ++D VLD+G+ +
Sbjct: 42 GKAGVAVVRVSGPHVFDVWKTIVRRNGKGKGKDIMEHARLIRCELLDANDGEVLDDGMAV 101
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
+F P S+T ED E VH S+AV++ ++ +L+ LPG+R AE GEF++RAF ++D
Sbjct: 102 FFQAPASYTTEDTIELHVHSSLAVLSRLMSSLSALPGVRQAERGEFTRRAFEAGRID--- 158
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
L QAE AL + + ++ +W + +E A V Y D
Sbjct: 159 ------LTQAE-------ALRDLIESETEVQRKWARKGVEGRAKVR-YEAMRND------ 198
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
+++ LA+VEA IDF E E IE+
Sbjct: 199 -----------------------------------AILALATVEALIDFGEGEDIEEGAW 223
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
+ R +V +L +I H+ S + G SG+ VI G PN GKSSL+N L Q++ +IVT
Sbjct: 224 DQARRRVSKLRANIAHHLSPSQR-GEIYTSGLSLVIFGPPNAGKSSLLNHLAQREAAIVT 282
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IPGTTRDV+E LDI G+ V + DTAGLR +SD++E+ G
Sbjct: 283 PIPGTTRDVLEVALDIAGWRVKVHDTAGLR-PSSDVVESIG 322
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLR----NIV 79
LA + TI+AL++ GK GV+V+RVSGP + K++ + K R ++
Sbjct: 28 LASRPTIYALATPPGKAGVAVVRVSGPHVFDVWKTIVRRNGKGKGKDIMEHARLIRCELL 87
Query: 80 DPVSKVVLDEGLCLWF 95
D VLD+G+ ++F
Sbjct: 88 DANDGEVLDDGMAVFF 103
>gi|85709802|ref|ZP_01040867.1| tRNA modification GTPase [Erythrobacter sp. NAP1]
gi|85688512|gb|EAQ28516.1| tRNA modification GTPase [Erythrobacter sp. NAP1]
Length = 428
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 112/335 (33%), Positives = 164/335 (48%), Gaps = 66/335 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
+ VIR+SGP AL+ +A + PR ASL + D + LD+ L LWF P
Sbjct: 18 AAIGVIRISGPSAGLALRQLAG----RSFTPRRASLAVLRDANGDT-LDQALVLWFEGPA 72
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
+ TGED E HG AV+ A+ AL ++ GLRPAE GEF++RAF N ++DL + E L D
Sbjct: 73 TATGEDLAELHCHGGRAVLRAVTKALGEIDGLRPAEEGEFTRRAFANGRIDLAEAEGLAD 132
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
L++AETELQR A+ + L +EWR+
Sbjct: 133 LLEAETELQRAAAVANVSSALSSKINEWRE------------------------------ 162
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
QV++L A VEA +DFS+++ + D +
Sbjct: 163 -QVLRLS---------------------------AQVEAALDFSDEDDVSD-LPEGFTWN 193
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
+ +L + + +E +++ G + V+ G PN GKS+L N L + + +I + I GTT
Sbjct: 194 IEELSLGLGEWLERPKS--EKLKEGFRVVLAGPPNAGKSTLFNALIESEAAITSPIAGTT 251
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
RDVIE+ + IGG P +DTAGLR + + IE G
Sbjct: 252 RDVIERSVAIGGVPFTFVDTAGLRDDSDEEIEVIG 286
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 110/248 (44%), Gaps = 70/248 (28%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFA+SSG + VIR+SGP AL+ +A + PR ASL + D + L
Sbjct: 6 STIFAVSSGSPPAAIGVIRISGPSAGLALRQLAG----RSFTPRRASLAVLRD-ANGDTL 60
Query: 88 DEGLCLWFPRHGKCGVSVIRVSGPDTLNA--LKSMACYPDQKVSKPRYASLRNIVDPVSE 145
D+ L LWF GP T L + C+ + V LR + + E
Sbjct: 61 DQALVLWF-------------EGPATATGEDLAELHCHGGRAV-------LRAVTKALGE 100
Query: 146 VVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAF 205
+ GLRPAE GEF++RAF
Sbjct: 101 I-------------------------------------------DGLRPAEEGEFTRRAF 117
Query: 206 FNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDF 265
N ++DL + E L DL++AETELQR A+ + L +EWR+ +L A VEA +DF
Sbjct: 118 ANGRIDLAEAEGLADLLEAETELQRAAAVANVSSALSSKINEWREQVLRLSAQVEAALDF 177
Query: 266 SEDEIIED 273
S+++ + D
Sbjct: 178 SDEDDVSD 185
>gi|419929233|ref|ZP_14446916.1| tRNA modification GTPase TrmE [Escherichia coli 541-1]
gi|388403759|gb|EIL64262.1| tRNA modification GTPase TrmE [Escherichia coli 541-1]
Length = 454
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/338 (33%), Positives = 161/338 (47%), Gaps = 77/338 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNI----- 333
RS + L G+ + + +R +++ I E IDF D IE +
Sbjct: 141 ARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE--IDFLSDGKIEAQLNDVIA 198
Query: 334 -LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
L+ VR++ Q G +R G+K VI G PN GKSSL+N L ++ +I
Sbjct: 199 ALDAVRAEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAI 243
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
VT I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 244 VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGFKAREVAETVLG----KLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>gi|15900887|ref|NP_345491.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae TIGR4]
gi|111658245|ref|ZP_01408937.1| hypothetical protein SpneT_02000559 [Streptococcus pneumoniae
TIGR4]
gi|418130180|ref|ZP_12767064.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA07643]
gi|418187025|ref|ZP_12823553.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47360]
gi|418229763|ref|ZP_12856368.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae EU-NP01]
gi|419477679|ref|ZP_14017504.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA18068]
gi|421242962|ref|ZP_15699482.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2081074]
gi|421247280|ref|ZP_15703766.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2082170]
gi|421270376|ref|ZP_15721232.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SPAR48]
gi|21363022|sp|Q97R24.1|MNME_STRPN RecName: Full=tRNA modification GTPase MnmE
gi|14972489|gb|AAK75131.1| thiophene and furan oxidation protein ThdF [Streptococcus
pneumoniae TIGR4]
gi|353803472|gb|EHD83764.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA07643]
gi|353852255|gb|EHE32244.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47360]
gi|353888661|gb|EHE68434.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae EU-NP01]
gi|379567061|gb|EHZ32048.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA18068]
gi|395609155|gb|EJG69244.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2081074]
gi|395614101|gb|EJG74122.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2082170]
gi|395868171|gb|EJG79289.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SPAR48]
Length = 457
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + K + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTKLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|15458528|gb|AAK99724.1| Thiophene and furan oxidation protein [Streptococcus pneumoniae R6]
Length = 479
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +I+DP++ V+DE +
Sbjct: 39 GEGAIGIVRLSGTDSFAIAQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 98
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 99 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 157
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 158 MDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EILNT 194
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 195 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 219
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + K + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 220 EKTMEFEQLLTKLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 278
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 279 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 314
>gi|421211119|ref|ZP_15668102.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070035]
gi|421231787|ref|ZP_15688431.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2080076]
gi|395573077|gb|EJG33668.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070035]
gi|395595816|gb|EJG56042.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2080076]
Length = 457
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKIFKGKDLSQVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + K + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTKLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|148984971|ref|ZP_01818214.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP3-BS71]
gi|182683965|ref|YP_001835712.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CGSP14]
gi|147922669|gb|EDK73786.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP3-BS71]
gi|182629299|gb|ACB90247.1| tRNA modification GTPase [Streptococcus pneumoniae CGSP14]
gi|429316019|emb|CCP35672.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SPN034156]
Length = 479
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +I+DP++ V+DE +
Sbjct: 39 GEGAIGIVRLSGTDSFAIAQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 98
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 99 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 157
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 158 MDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EILNT 194
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 195 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 219
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + K + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 220 EKTMEFEQLLTKLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 278
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 279 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 314
>gi|148998838|ref|ZP_01826274.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP11-BS70]
gi|168576255|ref|ZP_02722149.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae MLV-016]
gi|307067807|ref|YP_003876773.1| putative GTPase [Streptococcus pneumoniae AP200]
gi|418148440|ref|ZP_12785205.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13856]
gi|419470967|ref|ZP_14010826.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA07914]
gi|419503825|ref|ZP_14043494.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47760]
gi|421244834|ref|ZP_15701335.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2081685]
gi|421314187|ref|ZP_15764777.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47562]
gi|147755265|gb|EDK62316.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP11-BS70]
gi|183577997|gb|EDT98525.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae MLV-016]
gi|306409344|gb|ADM84771.1| Predicted GTPase [Streptococcus pneumoniae AP200]
gi|353813115|gb|EHD93348.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13856]
gi|379545683|gb|EHZ10822.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA07914]
gi|379606502|gb|EHZ71249.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47760]
gi|395609334|gb|EJG69421.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2081685]
gi|395914687|gb|EJH25531.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47562]
Length = 457
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + K + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTKLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|315634810|ref|ZP_07890092.1| tRNA modification GTPase TrmE [Aggregatibacter segnis ATCC 33393]
gi|315476362|gb|EFU67112.1| tRNA modification GTPase TrmE [Aggregatibacter segnis ATCC 33393]
Length = 451
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++RVSGP + ++ K KPR A D VLD+G+ L+F
Sbjct: 13 GRGGIGILRVSGPKAADVAHAVLG----KCPKPRMADYLPFKD-ADGTVLDQGITLYFKG 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ +L + + G+R A PGEFS++AF N+KLDL Q EA+
Sbjct: 68 PNSFTGEDVLELQGHGGQVVLDLLLKRILLIDGIRLARPGEFSEQAFLNDKLDLAQAEAI 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL ++G ++ ++ VEA IDF ++EI D + +
Sbjct: 128 ADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEEI--DFLAD- 184
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE H+ +GI + L+ VR
Sbjct: 185 ---------GKIEGHL-----------NGIIAQ----------------------LDQVR 202
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q GSI +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 203 AEAKQ--GSI-------------LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 247
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ + G P+ ++DTAGLR T ++
Sbjct: 248 TTRDVLREHIHLDGMPLHIIDTAGLRDATDEV 279
Score = 44.7 bits (104), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+K TI A ++ G+ G+ ++RVSGP + ++ K PKPR A D
Sbjct: 1 MKETIVAQATAPGRGGIGILRVSGPKAADVAHAVLG----KCPKPRMADYLPFKD-ADGT 55
Query: 86 VLDEGLCLWF 95
VLD+G+ L+F
Sbjct: 56 VLDQGITLYF 65
>gi|154300747|ref|XP_001550788.1| hypothetical protein BC1G_10673 [Botryotinia fuckeliana B05.10]
Length = 525
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 118/354 (33%), Positives = 176/354 (49%), Gaps = 79/354 (22%)
Query: 97 RHGKCGVSVIRVSGPDT-----------LNALKSMACYPDQKVSKPRYASLRNIVDPVSE 145
R G + + +SGP + + A M P + + +PRYA++R + +P +
Sbjct: 12 REGLSNIRRMELSGPKSGLFTVDECTSAVLASMHMGLCPSKSIPRPRYAAVRTLYEPANS 71
Query: 146 V--VLD-EGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGAL---TKLPGLRPAEPGE 199
+ +LD + L L+FP PN+ TGED E VHG A + A+L + T +R AEPGE
Sbjct: 72 IPNILDSDALVLYFPAPNTVTGEDVLELHVHGGSATVKAVLSTISQCTSAAKIRYAEPGE 131
Query: 200 FSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASV 259
F++RAF N++LDL Q EAL D + AETE QR+ A+ +GN +L +
Sbjct: 132 FTRRAFQNDRLDLAQVEALSDTLSAETEQQRRAAV---RGNSGKLGRTY----------- 177
Query: 260 EAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEA 319
EA+ R Q++ G +E A
Sbjct: 178 EAW-----------------REQLLYARGELE---------------------------A 193
Query: 320 YIDFSEDEIIEDN---ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNV 376
IDFSED+ +++ +L+ V +QV + I H S++ G ++ GI+ ++G PN
Sbjct: 194 LIDFSEDQHFDESPAELLSNVTAQVETMLELIAAHESASHR-GELLKKGIRIALLGPPNA 252
Query: 377 GKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GKSSL+N + ++ SIV+ GTTRD++E LDI GY DTAGLRT S I
Sbjct: 253 GKSSLLNQIVGREASIVSQEAGTTRDIVEVGLDIRGYLCTFADTAGLRTQASQI 306
>gi|116198089|ref|XP_001224856.1| hypothetical protein CHGG_07200 [Chaetomium globosum CBS 148.51]
gi|88178479|gb|EAQ85947.1| hypothetical protein CHGG_07200 [Chaetomium globosum CBS 148.51]
Length = 496
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 107/315 (33%), Positives = 158/315 (50%), Gaps = 65/315 (20%)
Query: 124 PDQKVSKPRYASLRNIVDPV------SEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIA 177
P++ KPR+A +R + +P + +V + L L+FP P + TGED E VHG A
Sbjct: 21 PNKAPPKPRFAGVRTLFEPGLADLSGANIVDSDALVLYFPGPKTVTGEDVLELHVHGGPA 80
Query: 178 VINAILGALTKLPG---LRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKAL 234
+ A+L A+ + P +R A PGEF++R+F N +LDL Q E+LGD + AETE QR+ A+
Sbjct: 81 TVKAVLSAVRRCPSSTEIRYAGPGEFTRRSFLNGRLDLAQIESLGDTLAAETEHQRRAAV 140
Query: 235 HQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHI 294
G L + Y WR +L +EA IDFSED+ +++ + + V +L I I
Sbjct: 141 RGNSGTLGKTYDSWRDQLLLGRGEIEALIDFSEDQHFDESPAELL-TNVTRLTEDILHSI 199
Query: 295 ELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIEL 354
L L + RS+++
Sbjct: 200 GLHK-----------------------------------LGSQRSELL------------ 212
Query: 355 SNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP 414
+ G+RI ++G PN GKSSLMN + ++ SIV++ GTTRD++E LDI GY
Sbjct: 213 --RNGIRI------ALLGPPNAGKSSLMNQIVGREASIVSAEAGTTRDIVEASLDIRGYL 264
Query: 415 VILLDTAGLRTTTSD 429
DTAG+RT TS+
Sbjct: 265 CSFADTAGIRTKTSE 279
>gi|443474058|ref|ZP_21064079.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudomonas
pseudoalcaligenes KF707]
gi|442904993|gb|ELS29908.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudomonas
pseudoalcaligenes KF707]
Length = 455
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 121/342 (35%), Positives = 167/342 (48%), Gaps = 84/342 (24%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ GV ++RVSGP ++ C + PR+A +D + LDEG+ L+FP
Sbjct: 15 QGRGGVGIVRVSGPLAARIADAI-C---GRTPNPRFAHYGPFLDATGQT-LDEGIALYFP 69
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
PNSFTGED E Q HG V++ +L +L G R A PGEFS+RAF N+KLDL Q EA
Sbjct: 70 GPNSFTGEDVFELQGHGGPVVLDILLRRCMEL-GARQARPGEFSERAFLNDKLDLAQAEA 128
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DLI+A +E + AL ++G +
Sbjct: 129 IADLIEASSEQAARNALRSLQGAFSR---------------------------------- 154
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI--IEDN--- 332
++H E+ IEL RI VEA IDF E+EI + D
Sbjct: 155 -------RVHSLTEQLIEL------RI-----------YVEAAIDFPEEEIDFLADGHVL 190
Query: 333 -ILNTVR---SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQK 388
+L+ VR S V++ G G +R G+ VI G PN GKSSL+N L +
Sbjct: 191 RLLDGVRDNLSTVIREAGQ-----------GALLRDGMNVVIAGRPNAGKSSLLNALAGR 239
Query: 389 QISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
+ +IVT I GTTRDV+ +H+ I G P+ ++DTAGLR T +
Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTDDHV 281
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 107/245 (43%), Gaps = 67/245 (27%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+++TI A+++ G+ GV ++RVSGP ++ C + P PR+A +D +
Sbjct: 4 VRDTIAAVATAQGRGGVGIVRVSGPLAARIADAI-C---GRTPNPRFAHYGPFLDATGQ- 58
Query: 86 VLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSE 145
LDEG+ L+FP GP N+ + Q P
Sbjct: 59 TLDEGIALYFP-------------GP---NSFTGEDVFELQGHGGP-------------- 88
Query: 146 VVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAF 205
VVLD L C E LGA R A PGEFS+RAF
Sbjct: 89 VVLDILL------------RRCME-------------LGA-------RQARPGEFSERAF 116
Query: 206 FNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDF 265
N+KLDL Q EA+ DLI+A +E + AL ++G + + ++E VEA IDF
Sbjct: 117 LNDKLDLAQAEAIADLIEASSEQAARNALRSLQGAFSRRVHSLTEQLIELRIYVEAAIDF 176
Query: 266 SEDEI 270
E+EI
Sbjct: 177 PEEEI 181
>gi|444383767|ref|ZP_21181949.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PCS8106]
gi|444386411|ref|ZP_21184468.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PCS8203]
gi|444247754|gb|ELU54285.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PCS8203]
gi|444248421|gb|ELU54929.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PCS8106]
Length = 479
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +I+DP++ V+DE +
Sbjct: 39 GEGAIGIVRLSGTDSFAIAQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 98
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 99 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 157
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 158 MDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQ-----------------------EILNT 194
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 195 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 219
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + K + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 220 EKTMEFEQLLTKLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 278
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 279 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 314
>gi|114049515|ref|YP_740065.1| tRNA modification GTPase TrmE [Shewanella sp. MR-7]
gi|123030127|sp|Q0HPE7.1|MNME_SHESR RecName: Full=tRNA modification GTPase MnmE
gi|113890957|gb|ABI45008.1| tRNA modification GTPase trmE [Shewanella sp. MR-7]
Length = 453
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 118/341 (34%), Positives = 172/341 (50%), Gaps = 74/341 (21%)
Query: 99 GKCGVSVIRVSGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ GV +IR+SG + A+ + P KPRYA + + +V+ D+G+ L+F
Sbjct: 14 GRGGVGIIRISGDKATDVAMAVLGHLP-----KPRYADYCDFKNASGQVI-DQGIALYFK 67
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
PNSFTGED E Q HG V++ ++ + ++ G+R A+PGEFS++AF N+KLDLTQ EA
Sbjct: 68 GPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVEGIRIAKPGEFSEQAFMNDKLDLTQAEA 127
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DLI A +E K L+ L E+ + + E + V
Sbjct: 128 IADLIDATSE-------QAAKSALQSLQGEFSKEVHELVDQV------------------ 162
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI---IEDNIL 334
H+ L VEA IDF ++E+ + I
Sbjct: 163 --------------THLRLY-------------------VEAAIDFPDEEVDFLSDGKIA 189
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
N + + +L ++ S K G IR G+K VI G PN GKSSL+N L K+ +IVT
Sbjct: 190 NALYKIIDKL-----SVVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESAIVT 244
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I GTTRDV+ +H+ + G P+ ++DTAGLR TT D +E G
Sbjct: 245 EIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTT-DTVEQIG 284
>gi|418159686|ref|ZP_12796385.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17227]
gi|419520943|ref|ZP_14060539.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA05245]
gi|353821419|gb|EHE01595.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17227]
gi|379539957|gb|EHZ05134.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA05245]
Length = 457
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA +E ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQIEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + K + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTKLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|254225543|ref|ZP_04919152.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae V51]
gi|125621863|gb|EAZ50188.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae V51]
Length = 449
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 118/338 (34%), Positives = 170/338 (50%), Gaps = 80/338 (23%)
Query: 105 VIRVSGPDTLNALKSMACYPDQKVS----KPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
+IRVSGP +A + Q V+ +PRYA D + LD+G+ L+FP P+
Sbjct: 16 IIRVSGP--------LAAHVAQTVTGRTLRPRYAEYLPFTDEDGQQ-LDQGIALFFPNPH 66
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGED E Q HG V++ ++ + ++ G+RPA PGEFS+RAF N+K+DLTQ EA+ D
Sbjct: 67 SFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDLTQAEAIAD 126
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI A +E +
Sbjct: 127 LIDASSE-------------------------------------------------QAAK 137
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILNTV 337
S + L G K RI + ++S+I L VEA IDF E+EI + D ++
Sbjct: 138 SALQSLQGEFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLADGKVSAD 187
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
++ ++ + +N+ G +R G+K VI G PN GKSSL+N L K+ +IVT I
Sbjct: 188 LQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTDIA 243
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+ +H+ I G P+ ++DTAGLR SD +E G
Sbjct: 244 GTTRDVLREHIHIDGMPLHIIDTAGLR-DASDTVEKIG 280
>gi|114326676|ref|YP_743833.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Granulibacter bethesdensis CGDNIH1]
gi|122328339|sp|Q0BW92.1|MNME_GRABC RecName: Full=tRNA modification GTPase MnmE
gi|114314850|gb|ABI60910.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Granulibacter bethesdensis CGDNIH1]
Length = 440
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 120/338 (35%), Positives = 165/338 (48%), Gaps = 69/338 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSM-ACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ ++VIR+SGP T N + + P Q R +SLR + + E+ LD+G+ LWF
Sbjct: 14 GRAAIAVIRISGPATRNTVTHLCGTLPPQ-----RKSSLRRLRNRSGEI-LDQGIILWFA 67
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC E +HG AVI + AL L GLRPAE GEF++RAF N KLDL TEA
Sbjct: 68 GPGSFTGEDCAELHLHGGNAVIEGMADALVDL-GLRPAEAGEFTRRAFLNGKLDL--TEA 124
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
EA D +I+
Sbjct: 125 ------------------------------------------EAVAD-----LIDAETSA 137
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
R + QL G + + +E R+ LA E IDF DE + + +
Sbjct: 138 QRRQALQQLDGGLSRQLETWTATLTRV---------LAWQETLIDFP-DEDLPAEVDAAL 187
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
R+ ++ L + + + K ++R G+ I+G+PN GKSSL+N L + +IV+S P
Sbjct: 188 RTDLLLLRQEMAQALNEGAKA-EKLREGLIFTILGKPNAGKSSLLNSLASRDAAIVSSQP 246
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRD IE L + G PV L+DTAGLR ++D IE EG
Sbjct: 247 GTTRDTIEVRLVLAGVPVTLIDTAGLR-DSADSIEAEG 283
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 5/73 (6%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
+ TIFAL+SG G+ ++VIR+SGP T N + + C +P R +SLR + + S +
Sbjct: 3 QETIFALASGAGRAAIAVIRISGPATRNTVTHL-CG---TLPPQRKSSLRRLRNR-SGEI 57
Query: 87 LDEGLCLWFPRHG 99
LD+G+ LWF G
Sbjct: 58 LDQGIILWFAGPG 70
>gi|417921660|ref|ZP_12565150.1| tRNA modification GTPase TrmE [Streptococcus cristatus ATCC 51100]
gi|342833545|gb|EGU67825.1| tRNA modification GTPase TrmE [Streptococcus cristatus ATCC 51100]
Length = 457
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +IVDP ++ +LDE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKIFRGKDLSKVASHTLNYGHIVDPQNQEILDEVMVGAMRS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNNAVKQLDGSLSDLINSTRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ +R
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTEIIR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + H+ + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTLEFE-QLLTHLLKTARRGKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIEG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDLVEQIG 292
>gi|148994246|ref|ZP_01823539.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP9-BS68]
gi|168488838|ref|ZP_02713037.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP195]
gi|417678970|ref|ZP_12328367.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17570]
gi|418234211|ref|ZP_12860790.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA08780]
gi|419508084|ref|ZP_14047737.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA49542]
gi|421220163|ref|ZP_15677012.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070425]
gi|421223493|ref|ZP_15680270.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070531]
gi|421278789|ref|ZP_15729597.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17301]
gi|421294119|ref|ZP_15744842.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA56113]
gi|147927387|gb|EDK78418.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP9-BS68]
gi|183572349|gb|EDT92877.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP195]
gi|332073349|gb|EGI83828.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17570]
gi|353888456|gb|EHE68230.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA08780]
gi|379611802|gb|EHZ76524.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA49542]
gi|395585952|gb|EJG46330.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070531]
gi|395588167|gb|EJG48500.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070425]
gi|395880222|gb|EJG91275.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17301]
gi|395894409|gb|EJH05389.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA56113]
Length = 457
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA +E ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQIEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + K + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTKLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|407069491|ref|ZP_11100329.1| tRNA modification GTPase TrmE [Vibrio cyclitrophicus ZF14]
Length = 453
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 118/333 (35%), Positives = 169/333 (50%), Gaps = 67/333 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP +A K KPRYA + LD+G+ L+FP
Sbjct: 14 GRGGVGIIRVSGP----LATQVALEVTGKTLKPRYAEYLPF-KSQDGIELDQGIALYFPN 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ ++ + + G+R A PGEFS+RAF N+K+DLTQ EA+
Sbjct: 69 PHSFTGEDVLELQGHGGPVVMDMLIKRILTITGVRAARPGEFSERAFLNDKMDLTQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E K L+ L E+ + I NT
Sbjct: 129 ADLIDASSE-------EAAKSALQSLQGEFSKRI------------------------NT 157
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILN-TV 337
+ ++ L RI VEA IDF E+EI D + + V
Sbjct: 158 LVDSLIHL----------------RI-----------YVEAAIDFPEEEI--DFLADGKV 188
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+ + + ++E + +N+ G +R G+K VI G PN GKSSL+N L K+ +IVT I
Sbjct: 189 SADLQAIIDNLEAVRQEANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTDIA 247
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 248 GTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 280
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP +A K KPRYA + L
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGP----LATQVALEVTGKTLKPRYAEYLPF-KSQDGIEL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALYFPNPHSFTGEDVLELQG 82
>gi|418125641|ref|ZP_12762551.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44511]
gi|418191561|ref|ZP_12828065.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47388]
gi|418214190|ref|ZP_12840925.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA54644]
gi|419484120|ref|ZP_14023896.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA43257]
gi|421300880|ref|ZP_15751550.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA19998]
gi|353797607|gb|EHD77940.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44511]
gi|353857462|gb|EHE37425.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47388]
gi|353871473|gb|EHE51344.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA54644]
gi|379583631|gb|EHZ48508.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA43257]
gi|395898440|gb|EJH09384.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA19998]
Length = 457
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA +E ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQIEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + K + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTKLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|319947147|ref|ZP_08021381.1| thiophene and furan oxidation protein ThdF [Streptococcus australis
ATCC 700641]
gi|417920272|ref|ZP_12563784.1| tRNA modification GTPase TrmE [Streptococcus australis ATCC 700641]
gi|319747195|gb|EFV99454.1| thiophene and furan oxidation protein ThdF [Streptococcus australis
ATCC 700641]
gi|342829923|gb|EGU64264.1| tRNA modification GTPase TrmE [Streptococcus australis ATCC 700641]
Length = 457
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +IVDP + +LDE +
Sbjct: 17 GEGAIGIVRLSGTDSFKIAQKIFKGKDLTSVASHTLNYGHIVDPDKDEILDEVMVGAMRS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL + + G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEILQLVIR-EGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ +R
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTEIIR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + + ++ + + G +R GI + I+G PNVGKSSL+N L +++ +IVT I G
Sbjct: 198 EKTTEFEALLTNLLKTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREEKAIVTDIEG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLVDTAGIR-ETEDIVERIG 292
>gi|322387781|ref|ZP_08061390.1| thiophene and furan oxidation protein ThdF [Streptococcus infantis
ATCC 700779]
gi|419843863|ref|ZP_14367168.1| tRNA modification GTPase TrmE [Streptococcus infantis ATCC 700779]
gi|321141648|gb|EFX37144.1| thiophene and furan oxidation protein ThdF [Streptococcus infantis
ATCC 700779]
gi|385702287|gb|EIG39432.1| tRNA modification GTPase TrmE [Streptococcus infantis ATCC 700779]
Length = 457
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 169/337 (50%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +IVDP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKIFKGKDLSQVASHTLNYGHIVDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARMAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L +L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSELINNTRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + ++ + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTNLLKTARR-GKILREGIATAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDVVEQIG 292
>gi|238765479|ref|ZP_04626398.1| tRNA modification GTPase mnmE [Yersinia kristensenii ATCC 33638]
gi|238696303|gb|EEP89101.1| tRNA modification GTPase mnmE [Yersinia kristensenii ATCC 33638]
Length = 454
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 116/335 (34%), Positives = 165/335 (49%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG +++ K+ KPRYA D LD+G+ L+FP
Sbjct: 15 GRGGVGILRVSGRAAAAVAEAVLG----KLPKPRYADYLPFKD-ADGSTLDQGIALYFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
RS V L G+ VRI ++++ L VEA IDF ++EI + D
Sbjct: 141 ARSAVNSLQGAFS----------VRIHKLVEALTHLRIYVEAAIDFPDEEIDFLSDG--- 187
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+ Q+ + +E+ + + G +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 188 KIEGQLNGVMADLEQ-VRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 246
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR ++
Sbjct: 247 IAGTTRDVLREHIHIDGMPLHIIDTAGLREANDEV 281
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
++ +TI A ++ G+ GV ++RVSG +++ K+PKPRYA D
Sbjct: 1 MSTTDTIVAQATPPGRGGVGILRVSGRAAAAVAEAVLG----KLPKPRYADYLPFKD-AD 55
Query: 84 KVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRN 138
LD+G+ L+FP + G V+ + GP L+ LK + P ++++P S R
Sbjct: 56 GSTLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERA 115
Query: 139 IVD 141
++
Sbjct: 116 FLN 118
>gi|322385140|ref|ZP_08058787.1| thiophene and furan oxidation protein ThdF [Streptococcus cristatus
ATCC 51100]
gi|321270764|gb|EFX53677.1| thiophene and furan oxidation protein ThdF [Streptococcus cristatus
ATCC 51100]
Length = 520
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +IVDP ++ +LDE +
Sbjct: 80 GEGAIGIVRLSGTDSFAIAQKIFRGKDLSKVASHTLNYGHIVDPQNQEILDEVMVGAMRS 139
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 140 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 198
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 199 MDIIRAKTDKAMNNAVKQLDGSLSDLINSTRQ-----------------------EILNT 235
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ +R
Sbjct: 236 -----------------------------------LAQVEVNIDYPEYDDVEEATTEIIR 260
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + H+ + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 261 EKTLEFE-QLLTHLLKTARRGKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIEG 319
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 320 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDLVEQIG 355
>gi|188535566|ref|YP_001909363.1| tRNA modification GTPase TrmE [Erwinia tasmaniensis Et1/99]
gi|254811484|sp|B2VCE7.1|MNME_ERWT9 RecName: Full=tRNA modification GTPase MnmE
gi|188030608|emb|CAO98503.1| tRNA modification GTPase TrmE [Erwinia tasmaniensis Et1/99]
Length = 454
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 166/335 (49%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG + + K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRVSGSKAAEVAQLLLG----KLPKPRYADYLPFRD-ADGSTLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED EFQ HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q
Sbjct: 70 PNSFTGEDVLEFQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLNDKLDLAQA--- 126
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
E++A + ID S ++
Sbjct: 127 -----------------------------------EAIADL---IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEIIEDNILNTV 337
RS V L G R+ ++++ L VEA IDF ++EI + L+
Sbjct: 141 ARSAVNSLQGVFS----------TRVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSDG 187
Query: 338 RSQVVQLHGSIEKHIELSNKC--GVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+ + QLH I E+ ++ G +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 188 KIEA-QLHQVIHNLAEVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 246
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 247 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 94/229 (41%), Gaps = 30/229 (13%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++RVSG + + K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRVSGSKAAEVAQLLLG----KLPKPRYADYLPFRD-ADGSTL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVDP 142
D+G+ LWFP + G V+ GP L+ LK + P +++ P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLEFQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLND 119
Query: 143 VSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAV-INAILGALTKLPGLRPAEPGEFS 201
++ E + + + G + +N ++ ALT L
Sbjct: 120 KLDLAQAEAIADLIDASSEQAARSAVN-SLQGVFSTRVNHLVEALTHL------------ 166
Query: 202 KRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQ 250
R + +D E I ++ + + LHQ+ NL ++ SE RQ
Sbjct: 167 -RIYVEAAIDFPDEE-----IDFLSDGKIEAQLHQVIHNLAEVRSEARQ 209
>gi|188580912|ref|YP_001924357.1| tRNA modification GTPase TrmE [Methylobacterium populi BJ001]
gi|205415780|sp|B1ZGG9.1|MNME_METPB RecName: Full=tRNA modification GTPase MnmE
gi|179344410|gb|ACB79822.1| tRNA modification GTPase TrmE [Methylobacterium populi BJ001]
Length = 444
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 113/341 (33%), Positives = 163/341 (47%), Gaps = 71/341 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ V+V+RVSGP AL +A +PR SLR + DP + +LD+ L W P
Sbjct: 20 GRAAVAVVRVSGPAAGPALDQLAG----GRPEPRRLSLRRLRDPGTGNILDQALVAWLPG 75
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P + TGED E +HG +AV A+L AL ++PG RPAE G FS+RAF N +
Sbjct: 76 PATATGEDMAELHLHGGLAVRAAVLRALGRVPGCRPAEAGAFSRRAFLNGR--------- 126
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
ID +E E I D I
Sbjct: 127 --------------------------------------------IDLTEAEGIADLIDAE 142
Query: 279 VRSQVVQ----LHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
+Q VQ L G++ + + + G+ + LA EA +DF+++ ++++ L
Sbjct: 143 TEAQRVQALRQLDGALGRQVAAWRETGIEL---------LAGAEAALDFADEGDVDEDGL 193
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
+ + + + G R+R G V+ G PN GKS+L+N L + +IV+
Sbjct: 194 DAALAGRAAALRDAIRAALADGRRGERLREGFCVVLAGAPNAGKSTLLNALSGRDAAIVS 253
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IPGTTRD IE D+GG PV+L+DTAGLR T+D+IE EG
Sbjct: 254 DIPGTTRDAIEVRCDLGGLPVVLVDTAGLR-ETADVIEAEG 293
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 132/289 (45%), Gaps = 65/289 (22%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
+ TIFA +SG G+ V+V+RVSGP AL +A P+PR SLR + DP + +
Sbjct: 9 EETIFAPASGFGRAAVAVVRVSGPAAGPALDQLA----GGRPEPRRLSLRRLRDPGTGNI 64
Query: 87 LDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEV 146
LD+ L W P GP T + ++E+
Sbjct: 65 LDQALVAWLP-------------GPATATG------------------------EDMAEL 87
Query: 147 VLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFF 206
L GL V A+L AL ++PG RPAE G FS+RAF
Sbjct: 88 HLHGGLA------------------------VRAAVLRALGRVPGCRPAEAGAFSRRAFL 123
Query: 207 NNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFS 266
N ++DLT+ E + DLI AETE QR +AL Q+ G L + + WR+ +E LA EA +DF+
Sbjct: 124 NGRIDLTEAEGIADLIDAETEAQRVQALRQLDGALGRQVAAWRETGIELLAGAEAALDFA 183
Query: 267 EDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA 315
++ ++++ L+ + + + G R+R G V+ A
Sbjct: 184 DEGDVDEDGLDAALAGRAAALRDAIRAALADGRRGERLREGFCVVLAGA 232
>gi|418193650|ref|ZP_12830142.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47439]
gi|353859630|gb|EHE39580.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47439]
Length = 457
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGIDSFAIAQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + K + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTKLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|332522452|ref|ZP_08398704.1| tRNA modification GTPase TrmE [Streptococcus porcinus str.
Jelinkova 176]
gi|332313716|gb|EGJ26701.1| tRNA modification GTPase TrmE [Streptococcus porcinus str.
Jelinkova 176]
Length = 458
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 169/337 (50%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D LN + + + +I++P ++ +LDE +
Sbjct: 18 GEGAIGIVRLSGTDALNIANKVFKGKNLHEVASHTINYGHIINPANQEILDEVMVTVMLA 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L K G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 78 PKTFTREDVIEINTHGGIAVTNEILQLLIK-QGARMAEPGEFTKRAFLNGRVDLTQAEAV 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L +L + RQ ILNT
Sbjct: 137 MDIIRAKTDKAMNIAVKQLDGSLSELINNTRQ-----------------------EILNT 173
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ +R
Sbjct: 174 -----------------------------------LAQVEVNIDYPEYDDVEEMTTALLR 198
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + +E + + + G +R G+ + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 199 EKTQEFQALLENLLRTARR-GKILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 257
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 258 TTRDVIEEYVNIKGVPLKLIDTAGIR-DTDDLVEKIG 293
>gi|149185268|ref|ZP_01863585.1| tRNA modification GTPase [Erythrobacter sp. SD-21]
gi|148831379|gb|EDL49813.1| tRNA modification GTPase [Erythrobacter sp. SD-21]
Length = 424
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 165/336 (49%), Gaps = 68/336 (20%)
Query: 101 CGVSVIRVSGPDTLNALKSM-ACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKP 159
+ V+R+SGP + +++M P + R AS+R V VLD L LWFP P
Sbjct: 15 AAIGVVRISGPLAGDTVEAMTGALPGE-----RRASVR-AVKGADGRVLDRALVLWFPGP 68
Query: 160 NSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALG 219
+ TGED EF HG AVI AI L GLR AEPGEF++RAF N +DL + E LG
Sbjct: 69 KTATGEDLAEFHCHGGRAVIAAIEADLAARDGLRRAEPGEFTRRAFANGVIDLAEAEGLG 128
Query: 220 DLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTV 279
DL+ AETELQR+ A G L Q WR +L A VE+ +DF + ED++
Sbjct: 129 DLLSAETELQRRAAEAAAGGGLSQKVEGWRSRVLGLSALVESQLDFGD----EDDV---- 180
Query: 280 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRS 339
++ ++ H+ELS G R+ +D + E ++D
Sbjct: 181 -GELPEMF-----HVELSGLLGEWRRA--------------LDAPQIERLKD-------- 212
Query: 340 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGT 399
GI+ V+ G PN GKSSL N L + +IV++ GT
Sbjct: 213 -------------------------GIRVVLAGPPNTGKSSLFNALLDEGAAIVSAEAGT 247
Query: 400 TRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TRDVIE+ + +G P +L+DTAGLR ++ IE G
Sbjct: 248 TRDVIERPIALGSVPFVLVDTAGLRDDSAGEIERIG 283
>gi|168494446|ref|ZP_02718589.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC3059-06]
gi|221231770|ref|YP_002510922.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae ATCC
700669]
gi|225854518|ref|YP_002736030.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae JJA]
gi|415698360|ref|ZP_11457133.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 459-5]
gi|415749416|ref|ZP_11477360.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SV35]
gi|415752100|ref|ZP_11479211.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SV36]
gi|417686512|ref|ZP_12335789.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41301]
gi|418073803|ref|ZP_12711061.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA11184]
gi|418078508|ref|ZP_12715731.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 4027-06]
gi|418080472|ref|ZP_12717684.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 6735-05]
gi|418089411|ref|ZP_12726568.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA43265]
gi|418098386|ref|ZP_12735485.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 6901-05]
gi|418105085|ref|ZP_12742143.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44500]
gi|418114514|ref|ZP_12751504.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 5787-06]
gi|418116752|ref|ZP_12753723.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 6963-05]
gi|418123289|ref|ZP_12760223.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44378]
gi|418127875|ref|ZP_12764771.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae NP170]
gi|418135077|ref|ZP_12771934.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA11426]
gi|418173389|ref|ZP_12810003.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41277]
gi|418178052|ref|ZP_12814636.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41565]
gi|418182779|ref|ZP_12819339.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA43380]
gi|418216467|ref|ZP_12843191.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae
Netherlands15B-37]
gi|419431552|ref|ZP_13971692.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae EU-NP05]
gi|419433526|ref|ZP_13973644.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA40183]
gi|419440295|ref|ZP_13980346.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA40410]
gi|419463937|ref|ZP_14003830.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA04175]
gi|419468882|ref|ZP_14008753.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA06083]
gi|419473082|ref|ZP_14012933.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13430]
gi|419497200|ref|ZP_14036910.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47522]
gi|419534487|ref|ZP_14073990.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17457]
gi|421281001|ref|ZP_15731799.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA04672]
gi|421309452|ref|ZP_15760079.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA62681]
gi|183575548|gb|EDT96076.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC3059-06]
gi|220674230|emb|CAR68765.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae ATCC
700669]
gi|225724002|gb|ACO19855.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae JJA]
gi|332075364|gb|EGI85833.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41301]
gi|353747699|gb|EHD28355.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 4027-06]
gi|353750650|gb|EHD31288.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA11184]
gi|353753012|gb|EHD33636.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 6735-05]
gi|353762097|gb|EHD42660.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA43265]
gi|353769746|gb|EHD50262.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 6901-05]
gi|353777150|gb|EHD57623.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44500]
gi|353787256|gb|EHD67663.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 5787-06]
gi|353789729|gb|EHD70121.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 6963-05]
gi|353797376|gb|EHD77711.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44378]
gi|353800336|gb|EHD80650.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae NP170]
gi|353840088|gb|EHE20162.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41277]
gi|353844826|gb|EHE24869.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41565]
gi|353848920|gb|EHE28930.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA43380]
gi|353873518|gb|EHE53379.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae
Netherlands15B-37]
gi|353902314|gb|EHE77844.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA11426]
gi|379539156|gb|EHZ04335.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA04175]
gi|379546985|gb|EHZ12123.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA06083]
gi|379552589|gb|EHZ17678.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13430]
gi|379565221|gb|EHZ30214.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17457]
gi|379576527|gb|EHZ41451.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA40183]
gi|379579727|gb|EHZ44626.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA40410]
gi|379601193|gb|EHZ65969.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47522]
gi|379630119|gb|EHZ94709.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae EU-NP05]
gi|381309796|gb|EIC50629.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SV36]
gi|381317012|gb|EIC57748.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 459-5]
gi|381317710|gb|EIC58435.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SV35]
gi|395882162|gb|EJG93209.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA04672]
gi|395910873|gb|EJH21742.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA62681]
Length = 457
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ ++ + D + +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIVQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTNLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|342163676|ref|YP_004768315.1| tRNA modification GTPase TrmE [Streptococcus pseudopneumoniae
IS7493]
gi|341933558|gb|AEL10455.1| tRNA modification GTPase TrmE [Streptococcus pseudopneumoniae
IS7493]
Length = 457
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + + +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKIFKGKDLRQVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTNLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|265983057|ref|ZP_06095792.1| tRNA modification GTPase mnmE [Brucella sp. 83/13]
gi|264661649|gb|EEZ31910.1| tRNA modification GTPase mnmE [Brucella sp. 83/13]
Length = 442
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 131/215 (60%), Gaps = 6/215 (2%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+VIR+SGP T +++ C Q + +PR+A+L + + D L L+FP P+
Sbjct: 21 SGVAVIRISGPKTRFVYETI-C---QAIPEPRHAALLTFRSRNGDAI-DRSLTLFFPTPH 75
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDC EF +HG AV+ +L L +LPG R AE GEF++RAF N K+DLT E L D
Sbjct: 76 SFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDLTIAEGLAD 135
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI AETE QR+ AL GN ++LYSEWRQ ++ + A +EA +DF+++ + ++ V
Sbjct: 136 LIAAETEGQRRLALQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVPGSVSMQVW 195
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA 315
Q+ L IE HI S K +R G+ VI A
Sbjct: 196 RQLSALKHEIEHHIA-SGKRAAMLRDGLHVVIVGA 229
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 72/114 (63%), Gaps = 1/114 (0%)
Query: 315 ASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEP 374
A +EA +DF+++ + ++ V Q+ L IE HI S K +R G+ VIVG P
Sbjct: 172 AFIEAELDFADESDVPGSVSMQVWRQLSALKHEIEHHIA-SGKRAAMLRDGLHVVIVGAP 230
Query: 375 NVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428
N GKSSL+NFL + ++I++ GTTRD++E LD+GG PV + DTAGLR T S
Sbjct: 231 NAGKSSLLNFLAGRDVAIISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDS 284
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFALSSG GV+VIR+SGP T +++ C Q +P+PR+A+L +
Sbjct: 9 DTIFALSSGRLPSGVAVIRISGPKTRFVYETI-C---QAIPEPRHAALLTFRSRNGDAI- 63
Query: 88 DEGLCLWFP 96
D L L+FP
Sbjct: 64 DRSLTLFFP 72
>gi|421227183|ref|ZP_15683891.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2072047]
gi|395596010|gb|EJG56234.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2072047]
Length = 457
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ ++ + D + +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIVQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTNLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|335033767|ref|ZP_08527132.1| tRNA modification GTPase [Agrobacterium sp. ATCC 31749]
gi|333795058|gb|EGL66390.1| tRNA modification GTPase [Agrobacterium sp. ATCC 31749]
Length = 442
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/209 (43%), Positives = 128/209 (61%), Gaps = 5/209 (2%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+VIR+SG L+AL+ + ++ PR ASL +I + +E++ D+GL + FP PN
Sbjct: 18 AGVAVIRISGAKALDALEMLTG---REFPSPRKASLCSIRNRNNEII-DQGLVIVFPAPN 73
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGE+C E HGS AV+ +I L L GLRPAE GEFS+RAF N K+DL + E L D
Sbjct: 74 SFTGENCVEIHSHGSRAVMASIFAELDNLEGLRPAEAGEFSRRAFENGKMDLLEVEGLAD 133
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
L+QAETE+QR+ A+ Q G L LY W + + A +EA +DF+++E + D++ V
Sbjct: 134 LLQAETEMQRRLAVEQSSGQLSALYDGWANRLTRARALIEAELDFADEEDVPDSVATQVW 193
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIK 309
+ L G I H++ G IR G K
Sbjct: 194 EAMAALKGEINAHLQ-GGGNGEIIRDGFK 221
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 76/121 (62%), Gaps = 2/121 (1%)
Query: 315 ASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEP 374
A +EA +DF+++E + D++ V + L G I H++ G IR G K +VGEP
Sbjct: 170 ALIEAELDFADEEDVPDSVATQVWEAMAALKGEINAHLQ-GGGNGEIIRDGFKVALVGEP 228
Query: 375 NVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETE 434
N GKS+L+N L + ++IVT I GTTRDV+ +++ GY V + DTAG+R T D++E E
Sbjct: 229 NAGKSTLLNALSGRDVAIVTDIAGTTRDVLSVDINLDGYLVRIFDTAGIR-ETQDVVEQE 287
Query: 435 G 435
G
Sbjct: 288 G 288
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 4/73 (5%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
LA +TI+ALSSG GV+VIR+SG L+AL+ + ++ P PR ASL +I + +
Sbjct: 2 LASADTIYALSSGALPAGVAVIRISGAKALDALEMLTG---REFPSPRKASLCSIRNRNN 58
Query: 84 KVVLDEGLCLWFP 96
+++ D+GL + FP
Sbjct: 59 EII-DQGLVIVFP 70
>gi|421234003|ref|ZP_15690624.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2061617]
gi|421249313|ref|ZP_15705774.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2082239]
gi|395601759|gb|EJG61905.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2061617]
gi|395614425|gb|EJG74445.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2082239]
Length = 457
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ ++ + D + +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIVQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTNLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|406915068|gb|EKD54194.1| hypothetical protein ACD_60C00118G0015 [uncultured bacterium]
Length = 429
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 121/334 (36%), Positives = 176/334 (52%), Gaps = 73/334 (21%)
Query: 105 VIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTG 164
+IRVSG + + +A +K+ KPR A+L + D V + V+DEG+ L+F P+SFTG
Sbjct: 1 MIRVSGEN----VSVVAHQLLKKILKPRKATLASFFD-VEDEVIDEGIALYFKAPHSFTG 55
Query: 165 EDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQA 224
ED E Q HGS V++A++ + L G+R A PGEFS+RAF N+K+DL Q EA+ DLI A
Sbjct: 56 EDILELQGHGSPVVVDALIQRILSL-GVRLARPGEFSERAFLNDKMDLLQAEAVADLIDA 114
Query: 225 ETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVV 284
+ + A+ +KG +FSE
Sbjct: 115 SSVHAAKNAMRSLKG------------------------EFSE----------------- 133
Query: 285 QLHGSIEKHIELSNKCGVRIRSGIKSVICL-ASVEAYIDFSEDEIIEDNILNT--VRSQV 341
+IRS ++ +I L +EA IDFSE+EI + LN + + +
Sbjct: 134 ------------------KIRSLVQIIIRLRMYIEAAIDFSEEEI---DFLNNQQITNDL 172
Query: 342 VQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTR 401
+ + K IE G +R G+ VI G PNVGKSSL+N L K ++IVT IPGTTR
Sbjct: 173 AYVMAEV-KSIETIATQGSLLREGMTVVIAGVPNVGKSSLLNKLSGKDVAIVTEIPGTTR 231
Query: 402 DVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
D++ +H+ + P+ ++DTAGLR + D +E EG
Sbjct: 232 DILREHILLDHLPLHIIDTAGLRDSL-DRVEQEG 264
>gi|149006299|ref|ZP_01830011.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP18-BS74]
gi|307127434|ref|YP_003879465.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 670-6B]
gi|417676771|ref|ZP_12326182.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17545]
gi|418096137|ref|ZP_12733252.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA16531]
gi|418132858|ref|ZP_12769731.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA11304]
gi|418155052|ref|ZP_12791783.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA16242]
gi|418225443|ref|ZP_12852072.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae NP112]
gi|419466459|ref|ZP_14006342.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA05248]
gi|419512410|ref|ZP_14052044.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA05578]
gi|419516689|ref|ZP_14056307.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA02506]
gi|147762076|gb|EDK69038.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP18-BS74]
gi|306484496|gb|ADM91365.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 670-6B]
gi|332075631|gb|EGI86099.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17545]
gi|353771124|gb|EHD51635.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA16531]
gi|353806814|gb|EHD87087.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA11304]
gi|353823344|gb|EHE03519.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA16242]
gi|353882751|gb|EHE62562.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae NP112]
gi|379544582|gb|EHZ09726.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA05248]
gi|379636880|gb|EIA01438.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA05578]
gi|379640692|gb|EIA05231.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA02506]
Length = 457
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ ++ + D + +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIVQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTNLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|424034650|ref|ZP_17774053.1| tRNA modification GTPase TrmE [Vibrio cholerae HENC-01]
gi|424037663|ref|ZP_17776402.1| tRNA modification GTPase TrmE [Vibrio cholerae HENC-02]
gi|408872311|gb|EKM11532.1| tRNA modification GTPase TrmE [Vibrio cholerae HENC-01]
gi|408895289|gb|EKM31729.1| tRNA modification GTPase TrmE [Vibrio cholerae HENC-02]
Length = 453
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 168/335 (50%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP +A K KPRYA VLD+G+ L+FP
Sbjct: 14 GRGGVGIIRVSGPKA----NQVALEVTGKTLKPRYAEYLPF-QAEDGTVLDQGIALYFPN 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ ++ + + G+R A PGEFS+RAF N+K+DLTQ EA+
Sbjct: 69 PHSFTGEDVLELQGHGGPVVMDMLIKRILGIDGVRAARPGEFSERAFLNDKMDLTQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S +E
Sbjct: 129 ADL-----------------------------------------IDASSEE--------A 139
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
+S + L G + RI++ ++S+I L VEA IDF E+EI + D ++
Sbjct: 140 AKSALQSLQGQFSQ----------RIQTLVESLIHLRIYVEAAIDFPEEEIDFLADGKVS 189
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
++ ++ K +N+ G +R G+K VI G PN GKSSL+N L K+ +IVT
Sbjct: 190 ADLQAIIDNLDAVRKE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTD 245
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 246 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 280
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP +A K KPRYA VL
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPKA----NQVALEVTGKTLKPRYAEYLPF-QAEDGTVL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALYFPNPHSFTGEDVLELQG 82
>gi|414561717|ref|NP_715645.2| tRNA uridine 5-carboxymethylaminomethyl modification system GTPase
subunit MnmE [Shewanella oneidensis MR-1]
gi|205371772|sp|Q8CX52.2|MNME_SHEON RecName: Full=tRNA modification GTPase MnmE
gi|410519463|gb|AAN53090.2| tRNA uridine 5-carboxymethylaminomethyl modification system GTPase
subunit MnmE [Shewanella oneidensis MR-1]
Length = 453
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 120/341 (35%), Positives = 170/341 (49%), Gaps = 74/341 (21%)
Query: 99 GKCGVSVIRVSGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ GV +IR+SG N A+ + P KPRYA S V+D+G+ L+F
Sbjct: 14 GRGGVGIIRISGDKATNVAMAVLGHLP-----KPRYADY-CYFKSASGQVIDQGIALFFK 67
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
PNSFTGED E Q HG V++ ++ + ++ G+R A+PGEFS++AF N+KLDLTQ EA
Sbjct: 68 GPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVEGIRIAKPGEFSEQAFMNDKLDLTQAEA 127
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DLI A +E K L+ L E+ + + E + V
Sbjct: 128 IADLIDATSE-------QAAKSALQSLQGEFSKEVHELVDQV------------------ 162
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI---IEDNIL 334
H+ L VEA IDF ++E+ + I
Sbjct: 163 --------------THLRLY-------------------VEAAIDFPDEEVDFLSDGKIA 189
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
N + + +L ++ S K G IR G+K VI G PN GKSSL+N L K+ +IVT
Sbjct: 190 NALYKIIDKLIA-----VQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESAIVT 244
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I GTTRDV+ +H+ + G P+ ++DTAGLR TT D +E G
Sbjct: 245 EIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTT-DTVEQIG 284
>gi|113972266|ref|YP_736059.1| tRNA modification GTPase TrmE [Shewanella sp. MR-4]
gi|123324470|sp|Q0HD65.1|MNME_SHESM RecName: Full=tRNA modification GTPase MnmE
gi|113886950|gb|ABI41002.1| tRNA modification GTPase trmE [Shewanella sp. MR-4]
Length = 453
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 118/341 (34%), Positives = 172/341 (50%), Gaps = 74/341 (21%)
Query: 99 GKCGVSVIRVSGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ GV +IR+SG + A+ + P KPRYA + + +V+ D+G+ L+F
Sbjct: 14 GRGGVGIIRISGDKATDVAMAVLGHLP-----KPRYADYCDFKNASGQVI-DQGIALFFK 67
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
PNSFTGED E Q HG V++ ++ + ++ G+R A+PGEFS++AF N+KLDLTQ EA
Sbjct: 68 GPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVEGIRIAKPGEFSEQAFMNDKLDLTQAEA 127
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DLI A +E K L+ L E+ + + E + V
Sbjct: 128 IADLIDATSE-------QAAKSALQSLQGEFSKEVHELVDQV------------------ 162
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI---IEDNIL 334
H+ L VEA IDF ++E+ + I
Sbjct: 163 --------------THLRLY-------------------VEAAIDFPDEEVDFLSDGKIA 189
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
N + + +L ++ S K G IR G+K VI G PN GKSSL+N L K+ +IVT
Sbjct: 190 NALYKIIDKL-----SVVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESAIVT 244
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I GTTRDV+ +H+ + G P+ ++DTAGLR TT D +E G
Sbjct: 245 EIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTT-DTVEQIG 284
>gi|306839729|ref|ZP_07472531.1| tRNA modification GTPase TrmE [Brucella sp. NF 2653]
gi|306405189|gb|EFM61466.1| tRNA modification GTPase TrmE [Brucella sp. NF 2653]
Length = 424
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 131/214 (61%), Gaps = 6/214 (2%)
Query: 102 GVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNS 161
GV+VIR+SGP T +++ C Q + +PR+A+L + + D L L+FP P+S
Sbjct: 4 GVAVIRISGPKTRFVYETI-C---QAIPEPRHAALLTFRSRNGDAI-DRSLTLFFPTPHS 58
Query: 162 FTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDL 221
FTGEDC EF +HG AV+ +L L +LPG R AE GEF++RAF N K+DLT E L DL
Sbjct: 59 FTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDLTIAEGLADL 118
Query: 222 IQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRS 281
I AETE QR+ AL GN ++LYSEWRQ ++ + A +EA +DF+++ + ++ V
Sbjct: 119 IAAETEGQRRLALQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVPGSVSMQVWR 178
Query: 282 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA 315
Q+ L IE HI S K +R G+ VI A
Sbjct: 179 QLSALKHEIEHHIA-SGKRAAMLRDGLHVVIVGA 211
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 72/114 (63%), Gaps = 1/114 (0%)
Query: 315 ASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEP 374
A +EA +DF+++ + ++ V Q+ L IE HI S K +R G+ VIVG P
Sbjct: 154 AFIEAELDFADESDVPGSVSMQVWRQLSALKHEIEHHIA-SGKRAAMLRDGLHVVIVGAP 212
Query: 375 NVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428
N GKSSL+NFL + ++I++ GTTRD++E LD+GG PV + DTAGLR T S
Sbjct: 213 NAGKSSLLNFLAGRDVAIISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDS 266
>gi|414158442|ref|ZP_11414736.1| tRNA modification GTPase mnmE [Streptococcus sp. F0441]
gi|410870987|gb|EKS18944.1| tRNA modification GTPase mnmE [Streptococcus sp. F0441]
Length = 457
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 116/339 (34%), Positives = 172/339 (50%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + + +SK +L +IVDP + V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFDIAQKI--FKGKDLSKVASHTLNYGHIVDPQTGKVMDEVMVGAM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 KSPKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL
Sbjct: 134 AVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EIL 170
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
NT LA VE ID+ E + +E+
Sbjct: 171 NT-----------------------------------LAQVEVNIDYPEYDDVEEATTAV 195
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
VR + ++ + + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 196 VREKTMEFEQLLTNLLRTAQR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 255 AGTTRDVIEEYVNINGVPLKLIDTAGIR-DTDDIVEQIG 292
>gi|430005745|emb|CCF21548.1| tRNA modification GTPase mnmE [Rhizobium sp.]
Length = 433
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 128/213 (60%), Gaps = 5/213 (2%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+V+R+SGP AL + + PR A+LR I+D E ++DE L L FP P+
Sbjct: 18 AGVAVLRISGPAAFPALMRLTG---GRQPPPRKAALRRILDR-EEQLIDEALVLTFPAPH 73
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGED E Q+HGS AV+NA+ L LPG R AE GEFS+RAF N +LDL + E L +
Sbjct: 74 SFTGEDVVELQLHGSRAVVNAVYSQLAALPGFRLAEAGEFSRRAFENGRLDLVEAEGLAE 133
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI ETE+QR+ A+ Q G LY +W + + + A +EA +DF++++ + ++ V
Sbjct: 134 LIATETEMQRRLAVEQSFGRQSHLYEDWARRLTHARAMIEAELDFADEDDVPGSVGERVT 193
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
+ + + +EKH+E S K G IR G K I
Sbjct: 194 ADIAAVRTELEKHLE-SAKGGEIIRDGFKVAIV 225
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 81/121 (66%), Gaps = 2/121 (1%)
Query: 315 ASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEP 374
A +EA +DF++++ + ++ V + + + +EKH+E S K G IR G K IVG P
Sbjct: 170 AMIEAELDFADEDDVPGSVGERVTADIAAVRTELEKHLE-SAKGGEIIRDGFKVAIVGPP 228
Query: 375 NVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETE 434
N GKSSL+N+L Q+ ++IVT + GTTRDV+ LD+ GY V + DTAG+R +SD+IE E
Sbjct: 229 NSGKSSLLNYLAQRDVAIVTDLAGTTRDVLHVDLDLEGYLVRVFDTAGIR-ESSDVIEQE 287
Query: 435 G 435
G
Sbjct: 288 G 288
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 9/131 (6%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFALSSG GV+V+R+SGP AL + + P PR A+LR I+D +++
Sbjct: 6 DTIFALSSGSLPAGVAVLRISGPAAFPALMRLTG---GRQPPPRKAALRRILDREEQLI- 61
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLNALKS-MACYPDQKVSKPRYASLRNIVDP 142
DE L L FP H G V+ + +NA+ S +A P ++++ S R +
Sbjct: 62 DEALVLTFPAPHSFTGEDVVELQLHGSRAVVNAVYSQLAALPGFRLAEAGEFSRRAFENG 121
Query: 143 VSEVVLDEGLC 153
++V EGL
Sbjct: 122 RLDLVEAEGLA 132
>gi|218708090|ref|YP_002415711.1| tRNA modification GTPase TrmE [Vibrio splendidus LGP32]
gi|218321109|emb|CAV17059.1| tRNA modification GTPase trmE [Vibrio splendidus LGP32]
Length = 467
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 117/334 (35%), Positives = 167/334 (50%), Gaps = 69/334 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP +A K KPRYA + LD+G+ L+FP
Sbjct: 28 GRGGVGIIRVSGP----LATQVALEVTGKTLKPRYAEYLPF-KSHDGIELDQGIALFFPN 82
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ ++ + + G+R A PGEFS+RAF N+K+DLTQ EA+
Sbjct: 83 PHSFTGEDVLELQGHGGPVVMDMLIKRILAISGVRAARPGEFSERAFLNDKMDLTQAEAI 142
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E
Sbjct: 143 ADLIDASSE-------------------------------------------------EA 153
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEIIEDNILN-T 336
+S + L G K RI + + S+I L VEA IDF E+EI D + +
Sbjct: 154 AKSALQSLQGEFSK----------RINTLVDSLIYLRIYVEAAIDFPEEEI--DFLADGK 201
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
V + + + ++E + +N+ G +R G+K VI G PN GKSSL+N L K+ +IVT I
Sbjct: 202 VSADLQAIIDNLEAVRQEANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTDI 260
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 261 AGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 294
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP +A K KPRYA + L
Sbjct: 18 DTIVAQATAPGRGGVGIIRVSGP----LATQVALEVTGKTLKPRYAEYLPF-KSHDGIEL 72
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 73 DQGIALFFPNPHSFTGEDVLELQG 96
>gi|422860055|ref|ZP_16906699.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK330]
gi|327470938|gb|EGF16394.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK330]
Length = 457
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 114/339 (33%), Positives = 172/339 (50%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + +SK +L +IVDP ++ +LDE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKI--FKGKNLSKVESHTLNYGHIVDPQNQEILDEVMVGAM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 RSPKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARMAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL
Sbjct: 134 AVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQ-----------------------EIL 170
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
NT LA VE ID+ E + +E+
Sbjct: 171 NT-----------------------------------LAQVEVNIDYPEYDDVEEMTTQL 195
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+R + + + ++ + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 196 MREKTAEFEALLSNLLDTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 255 EGTTRDVIEEYVNIKGVPLKLIDTAGIR-ETDDLVEQIG 292
>gi|241950667|ref|XP_002418056.1| GTPase MSS1, mitochondrial precursor [Candida dubliniensis CD36]
gi|223641395|emb|CAX43355.1| GTPase MSS1, mitochondrial precursor [Candida dubliniensis CD36]
Length = 536
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 116/353 (32%), Positives = 175/353 (49%), Gaps = 75/353 (21%)
Query: 97 RHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVD-----PVSEVVLDEG 151
+ GK ++V+R+SGP + + K K R AS+R + V LDE
Sbjct: 66 KFGKSAIAVVRISGPQSKYIYHKLTN--STKPPKNRIASVRKLYSFGHRCNQKSVFLDEA 123
Query: 152 LCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG------LRPAEPGEFSKRAF 205
L L+ P P ++TGED E +HG +++I ++L ++ L +R A+ GEFSK+AF
Sbjct: 124 LTLFLPGPKTYTGEDLLELHLHGGVSIIKSVLQSIKNLHDPSNGIMIRQADRGEFSKQAF 183
Query: 206 FNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDF 265
+N +LDLT+ E + D+I AETE QR +L G K + WR I+ +A++ IDF
Sbjct: 184 YNGRLDLTELEGINDMINAETESQRLASLASSSGQTKIEFMNWRNEIVNQMANLTMIIDF 243
Query: 266 SEDEIIE--DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDF 323
ED IE D I+ V+ + + IEL ++AY
Sbjct: 244 GEDHDIEETDQIIQDVKENIAK--------IEL-------------------EIKAY--- 273
Query: 324 SEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMN 383
L V+S + L+G I+ ++G PN GKSS++N
Sbjct: 274 ----------LLKVKSSQILLNG-------------------IQLALLGPPNAGKSSILN 304
Query: 384 FLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT-TTSDIIETEG 435
L K +IV+ I GTTRD+++ L+IGGY V++ DTAG+R+ +D IE EG
Sbjct: 305 ILANKDAAIVSEIAGTTRDILDIPLEIGGYKVVVGDTAGIRSFEEADSIEQEG 357
>gi|422884111|ref|ZP_16930560.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK49]
gi|332360804|gb|EGJ38610.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK49]
Length = 457
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 114/339 (33%), Positives = 172/339 (50%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + +SK +L +IVDP ++ +LDE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKI--FKGKNLSKVESHTLNYGHIVDPQNQEILDEVMVGAM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 RSPKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARMAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL
Sbjct: 134 AVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQ-----------------------EIL 170
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
NT LA VE ID+ E + +E+
Sbjct: 171 NT-----------------------------------LAQVEVNIDYPEYDDVEEMTTKL 195
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+R + + + ++ + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 196 MREKTAEFEALLSNLLDTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 255 EGTTRDVIEEYVNIKGVPLKLIDTAGIR-ETDDLVEQIG 292
>gi|401683482|ref|ZP_10815368.1| tRNA modification GTPase TrmE [Streptococcus sp. BS35b]
gi|418975259|ref|ZP_13523168.1| tRNA modification GTPase TrmE [Streptococcus oralis SK1074]
gi|383348630|gb|EID26589.1| tRNA modification GTPase TrmE [Streptococcus oralis SK1074]
gi|400187560|gb|EJO21754.1| tRNA modification GTPase TrmE [Streptococcus sp. BS35b]
Length = 457
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 116/339 (34%), Positives = 172/339 (50%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + +SK +L +IVDP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKI--FKGKDLSKVASHTLNYGHIVDPLTGKVMDEVMVGAM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 KSPKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL
Sbjct: 134 AVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EIL 170
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
NT LA VE ID+ E + +E+
Sbjct: 171 NT-----------------------------------LAQVEVNIDYPEYDDVEEATTAV 195
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
VR + ++ + + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 196 VREKTMEFEQLLTNLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 255 AGTTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|419493318|ref|ZP_14033044.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47210]
gi|421289642|ref|ZP_15740393.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA54354]
gi|421304960|ref|ZP_15755616.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA62331]
gi|379593493|gb|EHZ58305.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47210]
gi|395888883|gb|EJG99893.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA54354]
gi|395905622|gb|EJH16527.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA62331]
Length = 457
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 167/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +IVDP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKIFKGKDLNKVASHTLNYGHIVDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTNLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|320157825|ref|YP_004190204.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio vulnificus
MO6-24/O]
gi|31340460|sp|Q8DDI1.1|MNME_VIBVU RecName: Full=tRNA modification GTPase MnmE
gi|319933137|gb|ADV88001.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio vulnificus
MO6-24/O]
Length = 453
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 123/348 (35%), Positives = 164/348 (47%), Gaps = 97/348 (27%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYAS-LRNIVDPVSEVVLDEGLCLWFP 157
G+ GV +IRVSGP +A K K RYA L SE LD+G+ L+FP
Sbjct: 14 GRGGVGIIRVSGPQA----AQVALEVTGKTLKARYAEYLPFKAQDGSE--LDQGIALFFP 67
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P+SFTGED E Q HG V++ ++ + + G+RPA PGEFS+RAF N+K+DLTQ EA
Sbjct: 68 NPHSFTGEDVLELQGHGGPVVMDMLIKRILTISGVRPARPGEFSERAFLNDKMDLTQAEA 127
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DLI A +E
Sbjct: 128 IADLIDASSE-------------------------------------------------E 138
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI-------- 328
+S + L G K RI + ++S+I L VEA IDF E+EI
Sbjct: 139 AAKSALQSLQGQFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLADGKV 188
Query: 329 ------IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLM 382
I DN L+ VR + Q G +R G+K VI G PN GKSSL+
Sbjct: 189 AGDLQAIIDN-LDAVRKEANQ---------------GAIMREGMKVVIAGRPNAGKSSLL 232
Query: 383 NFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
N L K +IVT I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 233 NALSGKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 280
>gi|417937401|ref|ZP_12580701.1| tRNA modification GTPase TrmE [Streptococcus infantis SK970]
gi|343391665|gb|EGV04238.1| tRNA modification GTPase TrmE [Streptococcus infantis SK970]
Length = 457
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 115/339 (33%), Positives = 173/339 (51%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + +SK +L +IVDP++ ++DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKI--FKGKDLSKVASHTLNYGHIVDPLTGKIMDEVMVGAM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 KSPKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARMAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL
Sbjct: 134 AVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EIL 170
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
NT LA VE ID+ E + +E+
Sbjct: 171 NT-----------------------------------LAQVEVNIDYPEYDDVEEATTAV 195
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
VR + ++ + ++ + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 196 VREKTLEFEQLLTNLLKTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 255 AGTTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|422821166|ref|ZP_16869359.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK353]
gi|324991080|gb|EGC23014.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK353]
Length = 457
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 114/339 (33%), Positives = 172/339 (50%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + +SK +L +IVDP ++ +LDE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKI--FKGKNLSKVESHTLNYGHIVDPQNQEILDEVMLGAM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 RSPKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARMAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL
Sbjct: 134 AVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQ-----------------------EIL 170
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
NT LA VE ID+ E + +E+
Sbjct: 171 NT-----------------------------------LAQVEVNIDYPEYDDVEEMTTQL 195
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+R + + + ++ + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 196 MREKTAEFEALLSNLLDTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 255 EGTTRDVIEEYVNIKGVPLKLIDTAGIR-ETDDLVEQIG 292
>gi|421238776|ref|ZP_15695343.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2071247]
gi|395602039|gb|EJG62184.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2071247]
Length = 457
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 167/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYYDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + K + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTKLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|251791811|ref|YP_003006532.1| tRNA modification GTPase TrmE [Dickeya zeae Ech1591]
gi|247540432|gb|ACT09053.1| tRNA modification GTPase TrmE [Dickeya zeae Ech1591]
Length = 454
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 113/334 (33%), Positives = 161/334 (48%), Gaps = 69/334 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISGRQASVVAQAILG----KLPKPRYADYLPFHD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + PG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRVAAQPGVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI--IEDNILNT 336
RS V L G + + +R VEA IDF ++EI + D +
Sbjct: 141 ARSAVNSLQGVFSSRVHQLVEALTHLR---------IYVEAAIDFPDEEIDFLSDGKIEA 191
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+ ++V+ G +E + + G +R G+K VI G PN GKSSL+N L + +IVT I
Sbjct: 192 MLNEVI---GDLEA-VRGEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTDI 247
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRDV+ +H+ I G P+ ++DTAGLR ++
Sbjct: 248 AGTTRDVLREHIHIDGMPLHIIDTAGLREAGDEV 281
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISGRQASVVAQAILG----KLPKPRYADYLPFHD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK +A P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVAAQPGVRIARPGEFSERAFLN 118
>gi|350529807|ref|ZP_08908748.1| tRNA modification GTPase TrmE [Vibrio rotiferianus DAT722]
Length = 453
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 168/335 (50%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP +A K KPRYA VLD+G+ L+FP
Sbjct: 14 GRGGVGIIRVSGPKA----NQVALEVTGKTLKPRYAEYLPF-QAEDGTVLDQGIALYFPN 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ ++ + + G+R A PGEFS+RAF N+K+DLTQ EA+
Sbjct: 69 PHSFTGEDVLELQGHGGPVVMDMLIKRILGIDGVRAARPGEFSERAFLNDKMDLTQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S +E
Sbjct: 129 ADL-----------------------------------------IDASSEE--------A 139
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
+S + L G + RI++ ++S+I L VEA IDF E+EI + D ++
Sbjct: 140 AKSALQSLQGQFSQ----------RIQTLVESLIHLRIYVEAAIDFPEEEIDFLADGKVS 189
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
++ ++ K +N+ G +R G+K VI G PN GKSSL+N L K+ +IVT
Sbjct: 190 GDLQAIIDNLDAVRKE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTD 245
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 246 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 280
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP +A K KPRYA VL
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPKA----NQVALEVTGKTLKPRYAEYLPF-QAEDGTVL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALYFPNPHSFTGEDVLELQG 82
>gi|319899518|ref|YP_004159615.1| tRNA modification GTPase [Bartonella clarridgeiae 73]
gi|319403486|emb|CBI77066.1| tRNA modification GTPase [Bartonella clarridgeiae 73]
Length = 435
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 162/330 (49%), Gaps = 66/330 (20%)
Query: 102 GVSVIRVSGPDTLNALKSM-ACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+++R+SGP N +K++ C P K R +++ LD L ++FP P+
Sbjct: 15 GVAIVRLSGPHVKNVVKTLCGCLP-----KARLMHYGDLI-ARDGSFLDSALTVFFPAPH 68
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDC EF +HGS AV+N L LT R AE GEFS+RAF KLDL Q E+L D
Sbjct: 69 SFTGEDCAEFHLHGSKAVVNRFLDELTTFEECRLAEAGEFSRRAFIEGKLDLIQAESLAD 128
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LIQAETE QR+ A+ G L +LY +WR ++ + A +EA +DFS++ I D++ + +
Sbjct: 129 LIQAETESQRRLAIMGTSGTLTKLYRDWRHKLMTARALIEAELDFSDENDIPDSVSDKIW 188
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
+ +L+ S+ +HI + + +R GI+ VI A N+ +S
Sbjct: 189 QDIEKLYHSLCEHISAGERASI-LRDGIRIVIAGAP------------------NSGKSS 229
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
++ N+ SG IV E GTT
Sbjct: 230 II-------------NRL-----SGRSVAIVSEEE----------------------GTT 249
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
RD +E L GG V DTAGLR T + I
Sbjct: 250 RDALEVRLVFGGLLVFFTDTAGLRKTKNKI 279
>gi|85706893|ref|ZP_01037983.1| tRNA modification GTPase [Roseovarius sp. 217]
gi|85668504|gb|EAQ23375.1| tRNA modification GTPase [Roseovarius sp. 217]
Length = 428
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 126/342 (36%), Positives = 169/342 (49%), Gaps = 74/342 (21%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
GK GV+VIRVSGP A + + C V +PR A LR + D E LD+ L L F
Sbjct: 11 QGKAGVAVIRVSGPLAAEACRRL-C---GDVPEPRRAVLRVLRDEGGER-LDQALVLIFA 65
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
+ SFTGE EFQ+HGS+AV+ ++L L ++ GLRPAE GEF++RA N +LD
Sbjct: 66 ENESFTGESTAEFQLHGSVAVVASVLADLGRIDGLRPAEAGEFTRRALENGRLD------ 119
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
LA VE D E E
Sbjct: 120 --------------------------------------LAQVEGLADLIEAET------E 135
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
R Q +++ L +C RS I++V L EA IDF+++E+ D V
Sbjct: 136 AQRKQALRVFSG-----ALGERCEGWRRSLIRAVALL---EATIDFADEEVPVD-----V 182
Query: 338 RSQVVQLHGSIEKHIELSNKCGV----RIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIV 393
+V L + + +E + GV RIR+G + IVG PNVGKS+L+N L + +I
Sbjct: 183 SPEVTGLIQGVIQGLE-AEIAGVSVSERIRTGFEVAIVGAPNVGKSTLLNALAGRDAAIT 241
Query: 394 TSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
+ GTTRDVIE +D+ G PV LLDTAGLR TT D +E+ G
Sbjct: 242 SEFAGTTRDVIEVRMDLAGLPVTLLDTAGLRETT-DAVESIG 282
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI+ALS+ GK GV+VIRVSGP A + + C VP+PR A LR + D + L
Sbjct: 2 DTIYALSTAQGKAGVAVIRVSGPLAAEACRRL-C---GDVPEPRRAVLRVLRDEGGE-RL 56
Query: 88 DEGLCLWFPRH 98
D+ L L F +
Sbjct: 57 DQALVLIFAEN 67
>gi|444426986|ref|ZP_21222385.1| tRNA modification GTPase TrmE [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444239753|gb|ELU51310.1| tRNA modification GTPase TrmE [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 453
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 168/335 (50%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP +A K KPRYA VLD+G+ L+FP
Sbjct: 14 GRGGVGIIRVSGPKA----NQVALEVTGKTLKPRYAEYLPF-QAEDGTVLDQGIALYFPN 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ ++ + + G+R A PGEFS+RAF N+K+DLTQ EA+
Sbjct: 69 PHSFTGEDVLELQGHGGPVVMDMLIKRILGIDGVRAARPGEFSERAFLNDKMDLTQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S +E
Sbjct: 129 ADL-----------------------------------------IDASSEE--------A 139
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
+S + L G + RI++ ++S+I L VEA IDF E+EI + D ++
Sbjct: 140 AKSALQSLQGQFSQ----------RIQTLVESLIHLRIYVEAAIDFPEEEIDFLADGKVS 189
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
++ ++ K +N+ G +R G+K VI G PN GKSSL+N L K+ +IVT
Sbjct: 190 GDLQAIIDNLDAVRKE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTD 245
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 246 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 280
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP +A K KPRYA VL
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPKA----NQVALEVTGKTLKPRYAEYLPF-QAEDGTVL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALYFPNPHSFTGEDVLELQG 82
>gi|358464986|ref|ZP_09174944.1| tRNA modification GTPase TrmE [Streptococcus sp. oral taxon 058
str. F0407]
gi|357066515|gb|EHI76665.1| tRNA modification GTPase TrmE [Streptococcus sp. oral taxon 058
str. F0407]
Length = 457
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 167/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +IVDP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKIFKGKDLSQVASHTLNYGHIVDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTNLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-DTEDIVEQIG 292
>gi|46577354|sp|Q7MQK6.2|MNME_VIBVY RecName: Full=tRNA modification GTPase MnmE
Length = 453
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 123/348 (35%), Positives = 164/348 (47%), Gaps = 97/348 (27%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYAS-LRNIVDPVSEVVLDEGLCLWFP 157
G+ GV +IRVSGP +A K K RYA L SE LD+G+ L+FP
Sbjct: 14 GRGGVGIIRVSGPQA----AQVALEVTGKTLKARYAEYLPFKAQDGSE--LDQGIALFFP 67
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P+SFTGED E Q HG V++ ++ + + G+RPA PGEFS+RAF N+K+DLTQ EA
Sbjct: 68 NPHSFTGEDVLELQGHGGPVVMDMLIKRILTISGVRPARPGEFSERAFLNDKMDLTQAEA 127
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DLI A +E
Sbjct: 128 IADLIDASSE-------------------------------------------------E 138
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI-------- 328
+S + L G K RI + ++S+I L VEA IDF E+EI
Sbjct: 139 AAKSALQSLQGQFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLADGKV 188
Query: 329 ------IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLM 382
I DN L+ VR + Q G +R G+K VI G PN GKSSL+
Sbjct: 189 AGDLQAIIDN-LDAVRKEANQ---------------GAIMREGMKVVIAGRPNAGKSSLL 232
Query: 383 NFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
N L K +IVT I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 233 NALSGKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 280
>gi|388581258|gb|EIM21567.1| tRNA modification GTPase TrmE [Wallemia sebi CBS 633.66]
Length = 467
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 130/214 (60%), Gaps = 3/214 (1%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK G++V+RVSGPD M + + R+ + R I+ P ++ V+D L ++F
Sbjct: 20 GKAGIAVVRVSGPDVREVYNRMT--KSKALPNERFMANRRILHPTTKEVIDNALLVYFKA 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFT +D E +HG AV++A L AL ++ G RPAE GEF++RAF +KLDLT+ E L
Sbjct: 78 PRSFTSQDTLEMHLHGGNAVVSATLNALAEVKGCRPAERGEFTRRAFEAHKLDLTELEGL 137
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI+AETE+QR+ AL Q G +++ Y + R I+ L+ VEA IDF EDE IE+ +L+
Sbjct: 138 RDLIEAETEMQRKLALRQSSGAVREQYDDMRLEIIHCLSIVEAVIDFGEDEQIEEGVLDD 197
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
V L I +H+ + G +RSGI+ I
Sbjct: 198 AMESVRSLMDKIRRHLN-DGRRGEILRSGIRLAI 230
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 94/151 (62%), Gaps = 11/151 (7%)
Query: 290 IEKHIELSNKCGVRIRSG----------IKSVICLASVEAYIDFSEDEIIEDNILNTVRS 339
IE E+ K +R SG ++ + CL+ VEA IDF EDE IE+ +L+
Sbjct: 141 IEAETEMQRKLALRQSSGAVREQYDDMRLEIIHCLSIVEAVIDFGEDEQIEEGVLDDAME 200
Query: 340 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGT 399
V L I +H+ + G +RSGI+ I G PN GKS+L+N L +++ +IV+ +PGT
Sbjct: 201 SVRSLMDKIRRHLN-DGRRGEILRSGIRLAIYGPPNAGKSTLLNHLAKREAAIVSPLPGT 259
Query: 400 TRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TRDVIE +L++GGYPVI+ DTAG+R TT +I
Sbjct: 260 TRDVIELNLNLGGYPVIVSDTAGVRHTTQEI 290
>gi|419442502|ref|ZP_13982533.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13224]
gi|379554469|gb|EHZ19549.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13224]
Length = 457
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 167/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +IVDP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKIFKGKDLSQVASHTLNYGHIVDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTNLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|306829480|ref|ZP_07462670.1| tRNA modification GTPase TrmE [Streptococcus mitis ATCC 6249]
gi|304428566|gb|EFM31656.1| tRNA modification GTPase TrmE [Streptococcus mitis ATCC 6249]
Length = 457
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 114/339 (33%), Positives = 173/339 (51%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ ++ + + + +SK +L +IVDP + ++DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIVQKI--FKGKDLSKVASHTLNYGHIVDPQTGEIMDEVMVGAM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL + + G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 KSPKTFTREDIIEINTHGGIAVTNEILQLVIR-EGARMAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL
Sbjct: 134 AVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EIL 170
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
NT LA VE ID+ E + +E+
Sbjct: 171 NT-----------------------------------LAQVEVNIDYPEYDDVEEATTAV 195
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
VR + ++ + + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 196 VREKTMEFEQLLTNLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 255 AGTTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|407784849|ref|ZP_11131998.1| tRNA modification GTPase TrmE [Celeribacter baekdonensis B30]
gi|407204551|gb|EKE74532.1| tRNA modification GTPase TrmE [Celeribacter baekdonensis B30]
Length = 431
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 120/341 (35%), Positives = 169/341 (49%), Gaps = 72/341 (21%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
GK GV+V+R+SGP A+ ++ V PR +LR + D EV LDE L + F
Sbjct: 11 RGKAGVAVVRISGPLAFWAVHNLTG----DVPAPRRTALRVLRDVAGEV-LDEALVICFK 65
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
K SFTGE+ E Q+HGSIA++NA+L L+++ GLR AE GEF++RA N +LD
Sbjct: 66 KGASFTGEESAELQLHGSIAIVNAVLRTLSEMEGLRIAEAGEFTRRALENERLD------ 119
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
LA VE D E E
Sbjct: 120 --------------------------------------LAQVEGLADLIEAET------E 135
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
R Q +++ + L +K R R + V A +EA IDF+++E+ D V
Sbjct: 136 AQRRQALKVFSGV-----LGDKVE-RWREAL--VRAAALIEATIDFADEEVPLD-----V 182
Query: 338 RSQVVQLHGSIEKHIELSNKCGV---RIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
+V++L G++ +E + RIR G + IVG PN GKS+L+N L + +I +
Sbjct: 183 SPEVLELIGTVMLDLESEARGATMAERIRDGFEVAIVGPPNAGKSTLLNALAGRDAAITS 242
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
+ GTTRDVIE +++GG PV LLDTAGLR T D +E G
Sbjct: 243 EVAGTTRDVIEVRMELGGLPVTLLDTAGLR-ETEDAVEAIG 282
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI+AL+S GK GV+V+R+SGP A+ ++ VP PR +LR + D V+ VL
Sbjct: 2 DTIYALASARGKAGVAVVRISGPLAFWAVHNLTG----DVPAPRRTALRVLRD-VAGEVL 56
Query: 88 DEGLCLWFPR 97
DE L + F +
Sbjct: 57 DEALVICFKK 66
>gi|397661389|ref|YP_006502089.1| tRNA modification GTPase MnmE [Taylorella equigenitalis ATCC 35865]
gi|394349568|gb|AFN35482.1| tRNA modification GTPase MnmE [Taylorella equigenitalis ATCC 35865]
Length = 443
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 173/339 (51%), Gaps = 70/339 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ V+RVSG + +++ D KPR A+ + D +D GL L+FP
Sbjct: 14 GRGGIGVVRVSGQELAGFARALTNGLD---PKPRIATYTDFFDD-DGAAIDNGLLLYFPA 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG ++N +L +L G R AEPGEF+KRAF NNK+DLTQ E++
Sbjct: 70 PHSFTGEDVLELQGHGGPVILNMVLKRCIEL-GARLAEPGEFTKRAFLNNKIDLTQAESV 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL +LK ++S+
Sbjct: 129 ADLIDATSEKAARMALR----SLKGVFSD------------------------------- 153
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
++H + K I L VEA +DF E+EI + L
Sbjct: 154 ------RIHELVSKLINLR-----------------MLVEATLDFPEEEI---DFLEAAD 187
Query: 339 S--QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+ Q+ ++ +E I +N+ G +R G+K ++G PNVGKSSL+N L ++++IVT I
Sbjct: 188 ALGQLNEIRKLLEGIISQANQ-GTIMREGLKVALIGMPNVGKSSLLNALSGEEVAIVTDI 246
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV++ + I G P+ +DTAGLR T D++E G
Sbjct: 247 AGTTRDVVKNFIHIDGVPIHFMDTAGLR-ETEDLVEQIG 284
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
++TI A+++ G+ G+ V+RVSG + +++ D PKPR A+ + D
Sbjct: 3 EDTIAAIATAPGRGGIGVVRVSGQELAGFARALTNGLD---PKPRIATYTDFFDD-DGAA 58
Query: 87 LDEGLCLWFPR-HGKCGVSVIRV---SGPDTLNALKSMACYPDQKVSKP----RYASLRN 138
+D GL L+FP H G V+ + GP LN + ++++P + A L N
Sbjct: 59 IDNGLLLYFPAPHSFTGEDVLELQGHGGPVILNMVLKRCIELGARLAEPGEFTKRAFLNN 118
Query: 139 IVD 141
+D
Sbjct: 119 KID 121
>gi|417849222|ref|ZP_12495147.1| tRNA modification GTPase TrmE [Streptococcus mitis SK1080]
gi|339456849|gb|EGP69431.1| tRNA modification GTPase TrmE [Streptococcus mitis SK1080]
Length = 457
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 167/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +IVDP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKIFKGKDLSQVASHTLNYGHIVDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTNLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|422878762|ref|ZP_16925228.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK1059]
gi|422928610|ref|ZP_16961552.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
ATCC 29667]
gi|422931585|ref|ZP_16964516.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK340]
gi|332366815|gb|EGJ44556.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK1059]
gi|339616252|gb|EGQ20904.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
ATCC 29667]
gi|339619885|gb|EGQ24460.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK340]
Length = 479
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 114/339 (33%), Positives = 172/339 (50%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + +SK +L +IVDP ++ +LDE +
Sbjct: 39 GEGAIGIVRLSGTDSFAIAQKI--FKGKNLSKVESHTLNYGHIVDPQNQEILDEVMLGAM 96
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 97 RSPKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARMAEPGEFTKRAFLNGRVDLTQAE 155
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL
Sbjct: 156 AVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQ-----------------------KIL 192
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
NT LA VE ID+ E + +E+
Sbjct: 193 NT-----------------------------------LAQVEVNIDYPEYDDVEEMTTQL 217
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+R + + + ++ + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 218 MREKTAEFEALLSNLLDTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDI 276
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 277 EGTTRDVIEEYVNIKGVPLKLIDTAGIR-ETDDLVEQIG 314
>gi|399115354|emb|CCG18154.1| tRNA modification GTPase MnmE [Taylorella equigenitalis 14/56]
Length = 443
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 173/339 (51%), Gaps = 70/339 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ V+RVSG + +++ D KPR A+ + D +D GL L+FP
Sbjct: 14 GRGGIGVVRVSGQELAGFARALTNGLD---PKPRIATYTDFFDD-DGTAIDNGLLLYFPA 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG ++N +L +L G R AEPGEF+KRAF NNK+DLTQ E++
Sbjct: 70 PHSFTGEDVLELQGHGGPVILNMVLKRCIEL-GARLAEPGEFTKRAFLNNKIDLTQAESV 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL +LK ++S+
Sbjct: 129 ADLIDATSEKAARMALR----SLKGVFSD------------------------------- 153
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
++H + K I L VEA +DF E+EI + L
Sbjct: 154 ------RIHELVSKLINLR-----------------MLVEATLDFPEEEI---DFLEAAD 187
Query: 339 S--QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+ Q+ ++ +E I +N+ G +R G+K ++G PNVGKSSL+N L ++++IVT I
Sbjct: 188 ALGQLNEIRKLLEGIISQANQ-GTIMREGLKVALIGMPNVGKSSLLNALSGEEVAIVTDI 246
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV++ + I G P+ +DTAGLR T D++E G
Sbjct: 247 AGTTRDVVKNFIHIDGVPIHFMDTAGLR-ETEDLVEQIG 284
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
++TI A+++ G+ G+ V+RVSG + +++ D PKPR A+ + D
Sbjct: 3 EDTIAAIATAPGRGGIGVVRVSGQELAGFARALTNGLD---PKPRIATYTDFFDD-DGTA 58
Query: 87 LDEGLCLWFPR-HGKCGVSVIRV---SGPDTLNALKSMACYPDQKVSKP----RYASLRN 138
+D GL L+FP H G V+ + GP LN + ++++P + A L N
Sbjct: 59 IDNGLLLYFPAPHSFTGEDVLELQGHGGPVILNMVLKRCIELGARLAEPGEFTKRAFLNN 118
Query: 139 IVD 141
+D
Sbjct: 119 KID 121
>gi|261221111|ref|ZP_05935392.1| tRNA modification GTPase mnmE [Brucella ceti B1/94]
gi|265997072|ref|ZP_06109629.1| tRNA modification GTPase mnmE [Brucella ceti M490/95/1]
gi|260919695|gb|EEX86348.1| tRNA modification GTPase mnmE [Brucella ceti B1/94]
gi|262551540|gb|EEZ07530.1| tRNA modification GTPase mnmE [Brucella ceti M490/95/1]
Length = 442
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 131/214 (61%), Gaps = 6/214 (2%)
Query: 102 GVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNS 161
GV+VIR+SGP T +++ C Q + +PR+A+L + + D GL L+FP P+S
Sbjct: 22 GVAVIRISGPKTRFVYETI-C---QAIPEPRHAALLTFRSRNGDAI-DRGLTLFFPAPHS 76
Query: 162 FTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDL 221
FTGEDC EF +HG AV+ +L L +LPG R AE GEF++RAF N K+DLT E L DL
Sbjct: 77 FTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDLTIAEGLADL 136
Query: 222 IQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRS 281
I AETE QR+ A+ GN +LYSEWRQ ++ + A +EA +DF+++ + ++ V
Sbjct: 137 IAAETEGQRRLAMQVASGNQCKLYSEWRQRLINARAFIEAELDFADESDVPGSVSMQVWQ 196
Query: 282 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA 315
Q+ L IE HI S K +R G+ VI A
Sbjct: 197 QLSALKHEIEHHIA-SGKRAAMLRDGLHVVIVGA 229
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 72/114 (63%), Gaps = 1/114 (0%)
Query: 315 ASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEP 374
A +EA +DF+++ + ++ V Q+ L IE HI S K +R G+ VIVG P
Sbjct: 172 AFIEAELDFADESDVPGSVSMQVWQQLSALKHEIEHHIA-SGKRAAMLRDGLHVVIVGAP 230
Query: 375 NVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428
N GKSSL+NFL + ++I++ GTTRD++E LD+GG PV + DTAGLR T S
Sbjct: 231 NAGKSSLLNFLAGRDVAIISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDS 284
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFALSSG GV+VIR+SGP T +++ C Q +P+PR+A+L +
Sbjct: 9 DTIFALSSGRLPSGVAVIRISGPKTRFVYETI-C---QAIPEPRHAALLTFRSRNGDAI- 63
Query: 88 DEGLCLWFP 96
D GL L+FP
Sbjct: 64 DRGLTLFFP 72
>gi|410494873|ref|YP_006904719.1| tRNA modification GTPase mnmE [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|410440033|emb|CCI62661.1| tRNA modification GTPase mnmE [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
Length = 458
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 171/337 (50%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D L +S+ + + + +I+DP + ++DE +
Sbjct: 18 GEGAIGIVRLSGTDALAIAQSVFKEKNLEQVASHTINYGHIIDPKTGTIIDEVMVSVMLA 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT E+ E HG IAV N IL L + G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 78 PKTFTRENVVEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTKRAFLNGRVDLTQAEAV 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L QL ++ RQ ILNT
Sbjct: 137 MDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQ-----------------------EILNT 173
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ +R
Sbjct: 174 -----------------------------------LAQVEVNIDYPEYDDVEEMTTALLR 198
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + +E + + K G +R G+ + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 199 EKTQEFQSLLENLLR-TAKRGKILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 257
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 258 TTRDVIEEYVNIKGVPLKLVDTAGIR-ETDDLVEQIG 293
>gi|323496919|ref|ZP_08101947.1| tRNA modification GTPase TrmE [Vibrio sinaloensis DSM 21326]
gi|323317993|gb|EGA70976.1| tRNA modification GTPase TrmE [Vibrio sinaloensis DSM 21326]
Length = 453
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 114/335 (34%), Positives = 168/335 (50%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP ++A K +PRYA +D+G+ L+FP
Sbjct: 14 GRGGVGIIRVSGP----LAATVALEVTGKTLRPRYAEYLPFT-ATDGTQIDQGIALYFPN 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ ++ + +PG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 69 PHSFTGEDVLELQGHGGPVVMDMLIKRILDIPGIRTARPGEFSERAFLNDKLDLAQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI D S +E
Sbjct: 129 ADLI-----------------------------------------DASSEE--------A 139
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
+S + L G+ + RI + ++S+I L VEA IDF E+EI + D ++
Sbjct: 140 AKSALQSLQGAFSQ----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLADGKVS 189
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
++ ++ + +N+ G +R G+K VI G PN GKSSL+N L K+ +IVT
Sbjct: 190 ADLQAIIDNLAAVRQE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTD 245
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 246 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 280
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP ++A K +PRYA +
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGP----LAATVALEVTGKTLRPRYAEYLPFT-ATDGTQI 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLNAL-KSMACYPDQKVSKPRYASLRNIVD 141
D+G+ L+FP H G V+ + GP ++ L K + P + ++P S R ++
Sbjct: 59 DQGIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILDIPGIRTARPGEFSERAFLN 117
>gi|73543138|ref|YP_297658.1| tRNA modification GTPase TrmE [Ralstonia eutropha JMP134]
gi|123623715|sp|Q46VM0.1|MNME_CUPPJ RecName: Full=tRNA modification GTPase MnmE
gi|72120551|gb|AAZ62814.1| tRNA modification GTPase trmE [Ralstonia eutropha JMP134]
Length = 475
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 116/340 (34%), Positives = 168/340 (49%), Gaps = 68/340 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ V+RVSGPD + ++ + KPR+A+ +D +V+ D GL L+FP
Sbjct: 16 GRGGIGVVRVSGPDVRPVMHAICG----QALKPRHATYLPFLDGHGKVI-DHGLALYFPG 70
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLP---GLRPAEPGEFSKRAFFNNKLDLTQT 215
PNS+TGE+ E Q HG V+ +L + GLR AEPGEF++RAF N+KLDL Q
Sbjct: 71 PNSYTGEEVLELQGHGGPVVMQMLLTRCLQAGHGIGLRLAEPGEFTRRAFLNDKLDLAQA 130
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
EA+ DLI+A TE + A M+G + ++ VEA +DF E+EI
Sbjct: 131 EAVADLIEASTEAAARSAARSMEGEFSHAIHTLVEKVIHLRMLVEATLDFPEEEI----- 185
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILN 335
+E S+ G LA++ N L
Sbjct: 186 ----------------DFLEASDARG-----------QLATIR-------------NDLG 205
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
V +Q Q G +R G+ V+ G+PNVGKSSL+N L +++IVT
Sbjct: 206 NVLAQARQ---------------GALLREGLSVVLAGQPNVGKSSLLNALAGAELAIVTP 250
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I GTTRD +++ + I G P+ ++DTAGLR +D +E G
Sbjct: 251 IAGTTRDRVKETIQIEGIPLHIIDTAGLRDEATDEVERIG 290
>gi|37678186|ref|NP_932795.1| tRNA modification GTPase TrmE [Vibrio vulnificus YJ016]
gi|37196925|dbj|BAC92766.1| thiophene and furan oxidation protein ThdF [Vibrio vulnificus
YJ016]
Length = 462
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 123/348 (35%), Positives = 164/348 (47%), Gaps = 97/348 (27%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYAS-LRNIVDPVSEVVLDEGLCLWFP 157
G+ GV +IRVSGP +A K K RYA L SE LD+G+ L+FP
Sbjct: 23 GRGGVGIIRVSGPQA----AQVALEVTGKTLKARYAEYLPFKAQDGSE--LDQGIALFFP 76
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P+SFTGED E Q HG V++ ++ + + G+RPA PGEFS+RAF N+K+DLTQ EA
Sbjct: 77 NPHSFTGEDVLELQGHGGPVVMDMLIKRILTISGVRPARPGEFSERAFLNDKMDLTQAEA 136
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DLI A +E
Sbjct: 137 IADLIDASSE-------------------------------------------------E 147
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI-------- 328
+S + L G K RI + ++S+I L VEA IDF E+EI
Sbjct: 148 AAKSALQSLQGQFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLADGKV 197
Query: 329 ------IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLM 382
I DN L+ VR + Q G +R G+K VI G PN GKSSL+
Sbjct: 198 AGDLQAIIDN-LDAVRKEANQ---------------GAIMREGMKVVIAGRPNAGKSSLL 241
Query: 383 NFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
N L K +IVT I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 NALSGKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 289
>gi|300692994|ref|YP_003753989.1| GTPase involved in tRNA modification and in thiophene and furan
oxidation [Ralstonia solanacearum PSI07]
gi|299080054|emb|CBJ52729.2| GTPase involved in tRNA modification and in thiophene and furan
oxidation [Ralstonia solanacearum PSI07]
Length = 474
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 113/335 (33%), Positives = 164/335 (48%), Gaps = 68/335 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ V+RVSGPD + A+ C ++ +PR A+ +D + D G+ LWFP
Sbjct: 27 GRGGIGVVRVSGPD-VRAVMQAVC---GRLLQPRQATYLPFLDADGSAI-DRGIALWFPA 81
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLP---GLRPAEPGEFSKRAFFNNKLDLTQT 215
P+S+TGED E Q HG V+ +L + GLR AEPGEF++RAF N+KLDL Q
Sbjct: 82 PHSYTGEDVLELQGHGGPVVMQLLLSRCLQAGHGIGLRVAEPGEFTRRAFLNDKLDLAQA 141
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
EA+ DLI+A TE + A + G Q + ++ VEA +DF E+EI
Sbjct: 142 EAVADLIEASTEAAARSAARSLDGAFSQAVHALVERVIHLRMLVEATLDFPEEEI----- 196
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILN 335
+E S+ G LA + A + D +L
Sbjct: 197 ----------------DFLEASDARG-----------QLADIRARL---------DGVLA 220
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
R G +R G+ V+ G+PNVGKSSL+N L +++IVT
Sbjct: 221 QARQ-------------------GALLREGLHVVLAGQPNVGKSSLLNALAGAELAIVTP 261
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRD +++ + I G P+ ++DTAGLR T ++
Sbjct: 262 IAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEV 296
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 30 IFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDE 89
I A+++ G+ G+ V+RVSGPD + A+ C ++ +PR A+ +D +D
Sbjct: 19 IAAIATAPGRGGIGVVRVSGPD-VRAVMQAVC---GRLLQPRQATYLPFLD-ADGSAIDR 73
Query: 90 GLCLWFPR-HGKCGVSVIRVSG 110
G+ LWFP H G V+ + G
Sbjct: 74 GIALWFPAPHSYTGEDVLELQG 95
>gi|156972770|ref|YP_001443677.1| tRNA modification GTPase TrmE [Vibrio harveyi ATCC BAA-1116]
gi|388601699|ref|ZP_10160095.1| tRNA modification GTPase TrmE [Vibrio campbellii DS40M4]
gi|166234831|sp|A7N0X8.1|MNME_VIBHB RecName: Full=tRNA modification GTPase MnmE
gi|156524364|gb|ABU69450.1| hypothetical protein VIBHAR_00435 [Vibrio harveyi ATCC BAA-1116]
Length = 453
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 168/335 (50%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP +A K KPRYA VLD+G+ L+FP
Sbjct: 14 GRGGVGIIRVSGPKA----NQVALEVTGKTLKPRYAEYLPF-QAEDGTVLDQGIALYFPN 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ ++ + + G+R A PGEFS+RAF N+K+DLTQ EA+
Sbjct: 69 PHSFTGEDVLELQGHGGPVVMDMLIKRILGIDGVRAARPGEFSERAFLNDKMDLTQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S +E
Sbjct: 129 ADL-----------------------------------------IDASSEE--------A 139
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
+S + L G + RI++ ++S+I L VEA IDF E+EI + D ++
Sbjct: 140 AKSALQSLQGQFSQ----------RIQTLVESLIHLRIYVEAAIDFPEEEIDFLADGKVS 189
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
++ ++ K +N+ G +R G+K VI G PN GKSSL+N L K+ +IVT
Sbjct: 190 GDLQAIIDNLDAVRKE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTD 245
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 246 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 280
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP +A K KPRYA VL
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPKA----NQVALEVTGKTLKPRYAEYLPF-QAEDGTVL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALYFPNPHSFTGEDVLELQG 82
>gi|241665032|ref|YP_002983392.1| tRNA modification GTPase TrmE [Ralstonia pickettii 12D]
gi|240867059|gb|ACS64720.1| tRNA modification GTPase TrmE [Ralstonia pickettii 12D]
Length = 481
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 112/335 (33%), Positives = 165/335 (49%), Gaps = 68/335 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ V+RVSGPD + A+ C +V PR A+ +D + D G+ LWFP
Sbjct: 34 GRGGIGVVRVSGPD-VRAVMQAVC---GRVLTPRQATYLPFLDAEGNAI-DRGIALWFPA 88
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILG---ALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
P+S+TGED E Q HG V+ +L + GLR AEPGEF++RAF N+K+DL Q
Sbjct: 89 PHSYTGEDVLELQGHGGPVVMQLLLQRCLTAGREIGLRVAEPGEFTRRAFLNDKMDLAQA 148
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
EA+ DLI+A TE + A ++G Q + ++ VEA +DF E+EI
Sbjct: 149 EAVADLIEASTEAAARSAARSLEGAFSQAVHALVERVIHLRMLVEATLDFPEEEI----- 203
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILN 335
+E S+ G +GI++ + D +L
Sbjct: 204 ----------------DFLEASDARGQ--LAGIRTAV------------------DGVLA 227
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
R G +R G+ V+ G+PNVGKSSL+N L +++IVT
Sbjct: 228 QARQ-------------------GALLREGLHVVLAGQPNVGKSSLLNALAGAELAIVTP 268
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRD +++ + I G P+ ++DTAGLR T ++
Sbjct: 269 IAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEV 303
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 30 IFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDE 89
I A+++ G+ G+ V+RVSGPD + A+ C +V PR A+ +D + D
Sbjct: 26 IAAIATAPGRGGIGVVRVSGPD-VRAVMQAVC---GRVLTPRQATYLPFLDAEGNAI-DR 80
Query: 90 GLCLWFPR-HGKCGVSVIRVSG 110
G+ LWFP H G V+ + G
Sbjct: 81 GIALWFPAPHSYTGEDVLELQG 102
>gi|419766715|ref|ZP_14292892.1| tRNA modification GTPase TrmE [Streptococcus mitis SK579]
gi|383353755|gb|EID31358.1| tRNA modification GTPase TrmE [Streptococcus mitis SK579]
Length = 457
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 167/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTNLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|339640643|ref|ZP_08662087.1| tRNA modification GTPase TrmE [Streptococcus sp. oral taxon 056
str. F0418]
gi|339453912|gb|EGP66527.1| tRNA modification GTPase TrmE [Streptococcus sp. oral taxon 056
str. F0418]
Length = 457
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 170/337 (50%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + + + +IVDP S+ VLDE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKIFKGKNLNTVASHTLNYGHIVDPQSQEVLDEVMIGAMRS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IA+ N IL + + G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIALTNEILQLVIR-EGARMAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ +R
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEMTTQLMR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + ++ + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTIEFEALLSNLLKTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIEG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE++++I G P+ L+DTAG+R T+D++E G
Sbjct: 257 TTRDIIEEYVNIHGIPLKLIDTAGIR-ETNDLVEQIG 292
>gi|326423790|ref|NP_759969.2| tRNA modification GTPase TrmE [Vibrio vulnificus CMCP6]
gi|319999155|gb|AAO09496.2| tRNA modification GTPase TrmE [Vibrio vulnificus CMCP6]
Length = 462
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 123/348 (35%), Positives = 164/348 (47%), Gaps = 97/348 (27%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYAS-LRNIVDPVSEVVLDEGLCLWFP 157
G+ GV +IRVSGP +A K K RYA L SE LD+G+ L+FP
Sbjct: 23 GRGGVGIIRVSGPQA----AQVALEVTGKTLKARYAEYLPFKAQDGSE--LDQGIALFFP 76
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P+SFTGED E Q HG V++ ++ + + G+RPA PGEFS+RAF N+K+DLTQ EA
Sbjct: 77 NPHSFTGEDVLELQGHGGPVVMDMLIKRILTISGVRPARPGEFSERAFLNDKMDLTQAEA 136
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DLI A +E
Sbjct: 137 IADLIDASSE-------------------------------------------------E 147
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI-------- 328
+S + L G K RI + ++S+I L VEA IDF E+EI
Sbjct: 148 AAKSALQSLQGQFSK----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLADGKV 197
Query: 329 ------IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLM 382
I DN L+ VR + Q G +R G+K VI G PN GKSSL+
Sbjct: 198 AGDLQAIIDN-LDAVRKEANQ---------------GAIMREGMKVVIAGRPNAGKSSLL 241
Query: 383 NFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
N L K +IVT I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 242 NALSGKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 289
>gi|91795119|ref|YP_564770.1| tRNA modification GTPase TrmE [Shewanella denitrificans OS217]
gi|91717121|gb|ABE57047.1| tRNA modification GTPase trmE [Shewanella denitrificans OS217]
Length = 466
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 172/340 (50%), Gaps = 72/340 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IR+SG N +MA KV K RYA + D + V+D+G+ L+F
Sbjct: 27 GRGGVGIIRISGDLATNV--AMAVLG--KVPKTRYADYCDFKDA-DDRVIDQGIALFFKG 81
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ ++ + ++ G+R A+PGEFS++AF N+KLDLTQ EA+
Sbjct: 82 PNSFTGEDVLELQGHGGQIVLDMLIKRVMQVSGVRIAKPGEFSEQAFLNDKLDLTQAEAI 141
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E K L+ L E+ + + E++E
Sbjct: 142 ADLIDATSE-------QAAKSALQSLQGEFSKEV---------------HELVE------ 173
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI---IEDNILN 335
QV L VEA IDF ++E+ + I N
Sbjct: 174 ---QVTNLR---------------------------LYVEAAIDFPDEEVDFLSDGKIAN 203
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+ + +L ++ S K G IR G+K VI G PN GKSSL+N L K+ +IVT
Sbjct: 204 ALYRIIAKL-----DTVQDSAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESAIVTE 258
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I GTTRDV+ +H+ + G P+ ++DTAGLR T D +E G
Sbjct: 259 IAGTTRDVLREHIHLDGMPLHIIDTAGLRDTL-DTVEKIG 297
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 13 AVIFFSRRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRY 72
A F + +TI A ++ G+ GV +IR+SG N +MA KVPK RY
Sbjct: 2 AAFSFEKLAGIPVTTDTIVAQATAPGRGGVGIIRISGDLATNV--AMAVLG--KVPKTRY 57
Query: 73 ASLRNIVDPVSKVVLDEGLCLWF 95
A + D +V+ D+G+ L+F
Sbjct: 58 ADYCDFKDADDRVI-DQGIALFF 79
>gi|50914157|ref|YP_060129.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS10394]
gi|73919891|sp|Q5XCB7.1|MNME_STRP6 RecName: Full=tRNA modification GTPase MnmE
gi|50903231|gb|AAT86946.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Streptococcus pyogenes MGAS10394]
Length = 458
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 171/337 (50%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D L +S+ + + + +I+DP + ++DE +
Sbjct: 18 GEGAIGIVRLSGTDALAIAQSVFKGKNLEQVASHTINYGHIIDPKTGTIIDEVMVSVMLA 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT E+ E HG IAV N IL L + G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 78 PKTFTRENVVEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTKRAFLNGRVDLTQAEAV 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L QL ++ RQ ILNT
Sbjct: 137 MDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQ-----------------------EILNT 173
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ +R
Sbjct: 174 -----------------------------------LAQVEVNIDYPEYDDVEEMTTALLR 198
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + +E + + K G +R G+ + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 199 EKTQEFQSLLENLLR-TAKRGKILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 257
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 258 TTRDVIEEYVNIKGVPLKLVDTAGIR-ETDDLVEQIG 293
>gi|435855276|ref|YP_007316595.1| tRNA modification GTPase TrmE [Halobacteroides halobius DSM 5150]
gi|433671687|gb|AGB42502.1| tRNA modification GTPase TrmE [Halobacteroides halobius DSM 5150]
Length = 461
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 109/326 (33%), Positives = 172/326 (52%), Gaps = 64/326 (19%)
Query: 102 GVSVIRVSGPDTLN-ALKSMACYPDQKVSK--PRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ ++R+SGP + A K ++ ++ A NI+DP +E ++DE + L
Sbjct: 18 GIGIVRISGPKAIEIADKIFKSIQNKSLADVDSYTAHYGNIIDPKTEQLIDEVITLVMKA 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P ++T ED E HG ++ IL + + G R AEPGEF+KRAF N ++DL+Q EA+
Sbjct: 78 PKTYTTEDIVEIDCHGGTVILRKILDVVLQ-QGARLAEPGEFTKRAFLNGRMDLSQAEAV 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI+++TE + AL ++G L + +N
Sbjct: 137 IDLIRSKTEANMEVALDHLEGGLAKK-------------------------------VND 165
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+R +V L LA +EA IDF EDEI +D N +
Sbjct: 166 IRQDLVSL---------------------------LAHLEATIDFPEDEI-DDFESNELD 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+++ Q+ ++ +E S K G ++ GI++ I+G PNVGKSSL+N L +++ +IVT +PG
Sbjct: 198 NRINQVLNKVDNLLETS-KRGKILKEGIETAIIGRPNVGKSSLLNALLREKRAIVTEVPG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLR 424
TTRDVIE+ ++IGG P+ ++DTAG+R
Sbjct: 257 TTRDVIEEVINIGGIPIKIIDTAGIR 282
>gi|168483087|ref|ZP_02708039.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC1873-00]
gi|418162069|ref|ZP_12798756.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17328]
gi|418175834|ref|ZP_12812431.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41437]
gi|418218760|ref|ZP_12845427.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae NP127]
gi|418238588|ref|ZP_12865143.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419459859|ref|ZP_13999792.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA02270]
gi|419462177|ref|ZP_14002087.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA02714]
gi|419525764|ref|ZP_14065327.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA14373]
gi|172043445|gb|EDT51491.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC1873-00]
gi|353828452|gb|EHE08592.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17328]
gi|353842402|gb|EHE22449.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41437]
gi|353875415|gb|EHE55267.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae NP127]
gi|353894338|gb|EHE74080.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|379532885|gb|EHY98109.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA02270]
gi|379533023|gb|EHY98246.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA02714]
gi|379558457|gb|EHZ23491.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA14373]
Length = 457
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 167/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +IVDP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKIFKGKDLSQVASHTLNYGHIVDPLTGKVMDEVMIGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTNLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|349700736|ref|ZP_08902365.1| tRNA modification GTPase TrmE [Gluconacetobacter europaeus LMG
18494]
Length = 464
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 117/341 (34%), Positives = 172/341 (50%), Gaps = 74/341 (21%)
Query: 100 KCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIV--DPVSEVVLDEGLCLWFP 157
+ ++V+R+SGP T ++S+ C ++ PR ASLR + D + V+LD L LWFP
Sbjct: 49 RAAIAVMRLSGPGTGRIVESL-C---GRLPAPRRASLRGLWRRDGDAPVLLDRALVLWFP 104
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P S+TGED E +H AVI+A+ L L G RPAEPGEFS+RAF + +LDL Q E
Sbjct: 105 GPESYTGEDSAELHLHAGPAVISAVADTLVAL-GARPAEPGEFSRRAFAHGRLDLMQAEG 163
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEI---IEDN 274
+ DLI AETE QR++AL Q+ G +LY +W + LA EA IDF ++E+ +E
Sbjct: 164 IADLIDAETEAQRRQALAQVDGAQSRLYQQWADRLRVLLAHQEALIDFPDEELPPEVEQE 223
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
++N +R LH +++ ++ + + R+R G+ I E + + ++L
Sbjct: 224 LVNGLRV----LHATMQDYLAM-GEGAERLRRGLVFAIV----------GEPNVGKSSLL 268
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
N + +G + IV +
Sbjct: 269 NAL--------------------------AGRDAAIV----------------------S 280
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
+ GTTRD IE + +G PV L+DTAGLR T D IE EG
Sbjct: 281 TRAGTTRDAIEIRVVMGDVPVTLVDTAGLR-ETDDEIEAEG 320
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 57/111 (51%), Gaps = 19/111 (17%)
Query: 30 IFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIV--DPVSKVVL 87
IFAL+SG + ++V+R+SGP T ++S+ C ++P PR ASLR + D + V+L
Sbjct: 40 IFALASGLSRAAIAVMRLSGPGTGRIVESL-C---GRLPAPRRASLRGLWRRDGDAPVLL 95
Query: 88 DEGLCLWFPR------------HGKCGVSVIRVSGPDTLNALKSMACYPDQ 126
D L LWFP H G +VI DTL AL + P +
Sbjct: 96 DRALVLWFPGPESYTGEDSAELHLHAGPAVISAVA-DTLVALGARPAEPGE 145
>gi|71903433|ref|YP_280236.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS6180]
gi|123639929|sp|Q48TS5.1|MNME_STRPM RecName: Full=tRNA modification GTPase MnmE
gi|71802528|gb|AAX71881.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Streptococcus pyogenes MGAS6180]
Length = 458
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 171/337 (50%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D L +S+ + + + +I+DP + ++DE +
Sbjct: 18 GEGAIGIVRLSGTDALAIAQSVFKGKNLEQVASHTINYGHIIDPKTGTIIDEVMVSVMLA 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT E+ E HG IAV N IL L + G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 78 PKTFTRENVVEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTKRAFLNGRVDLTQAEAV 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L QL ++ RQ ILNT
Sbjct: 137 MDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQ-----------------------EILNT 173
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ +R
Sbjct: 174 -----------------------------------LAQVEVNIDYPEYDDVEEMTTALLR 198
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + +E + + K G +R G+ + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 199 EKTQEFQSLLENLLR-TAKRGKILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 257
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 258 TTRDVIEEYVNIKGVPLKLVDTAGIR-ETDDLVEQIG 293
>gi|153835787|ref|ZP_01988454.1| tRNA modification GTPase TrmE [Vibrio harveyi HY01]
gi|148867486|gb|EDL66856.1| tRNA modification GTPase TrmE [Vibrio harveyi HY01]
Length = 453
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 168/335 (50%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP +A K KPRYA VLD+G+ L+FP
Sbjct: 14 GRGGVGIIRVSGPKA----NQVALEVTGKTLKPRYAEYLPF-QAEDGTVLDQGVALYFPN 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ ++ + + G+R A PGEFS+RAF N+K+DLTQ EA+
Sbjct: 69 PHSFTGEDVLELQGHGGPVVMDMLIKRILGIDGVRAARPGEFSERAFLNDKMDLTQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S +E
Sbjct: 129 ADL-----------------------------------------IDASSEE--------A 139
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
+S + L G + RI++ ++S+I L VEA IDF E+EI + D ++
Sbjct: 140 AKSALQSLQGQFSQ----------RIQTLVESLIHLRIYVEAAIDFPEEEIDFLADGKVS 189
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
++ ++ K +N+ G +R G+K VI G PN GKSSL+N L K+ +IVT
Sbjct: 190 GDLQAIIDNLDAVRKE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTD 245
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 246 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 280
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP +A K KPRYA VL
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPKA----NQVALEVTGKTLKPRYAEYLPF-QAEDGTVL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGVALYFPNPHSFTGEDVLELQG 82
>gi|94988539|ref|YP_596640.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS9429]
gi|417856948|ref|ZP_12502007.1| tRNA modification GTPase TrmE [Streptococcus pyogenes HKU
QMH11M0907901]
gi|166234823|sp|Q1JLX3.1|MNME_STRPC RecName: Full=tRNA modification GTPase MnmE
gi|94542047|gb|ABF32096.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Streptococcus pyogenes MGAS9429]
gi|387933903|gb|EIK42016.1| tRNA modification GTPase TrmE [Streptococcus pyogenes HKU
QMH11M0907901]
Length = 458
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 171/337 (50%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D L +S+ + + + +I+DP + ++DE +
Sbjct: 18 GEGAIGIVRLSGTDALAIAQSVFKGKNLEQVASHTINYGHIIDPKTGTIIDEVMVSVMLA 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT E+ E HG IAV N IL L + G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 78 PKTFTRENVVEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTKRAFLNGRVDLTQAEAV 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L QL ++ RQ ILNT
Sbjct: 137 MDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQ-----------------------EILNT 173
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ +R
Sbjct: 174 -----------------------------------LAQVEVNIDYPEYDDVEEMTTALLR 198
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + +E + + K G +R G+ + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 199 EKTQEFQSLLENLLR-TAKRGKILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 257
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 258 TTRDVIEEYVNIKGVPLKLVDTAGIR-ETDDLVEQIG 293
>gi|421277307|ref|ZP_15728127.1| tRNA modification GTPase TrmE [Streptococcus mitis SPAR10]
gi|395876588|gb|EJG87664.1| tRNA modification GTPase TrmE [Streptococcus mitis SPAR10]
Length = 457
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 114/339 (33%), Positives = 173/339 (51%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + +SK +L +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKI--FKGKDLSKVASHTLNYGHIIDPLTGKVMDEVMVGAM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 KSPKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARMAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL
Sbjct: 134 AVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EIL 170
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
NT LA VE ID+ E + +E+
Sbjct: 171 NT-----------------------------------LAQVEVNIDYPEYDDVEEATTAV 195
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
VR + ++ + ++ + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 196 VREKTMEFEQLLTNLLKTARR-GKILREGIATAIIGRPNVGKSSLLNNLLREDKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 255 AGTTRDVIEEYVNINGVPLKLIDTAGIR-ETDDVVEQIG 292
>gi|374314441|ref|YP_005060870.1| GTP-binding protein [Serratia symbiotica str. 'Cinara cedri']
gi|363988667|gb|AEW44858.1| GTP-binding protein [Serratia symbiotica str. 'Cinara cedri']
Length = 454
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 109/332 (32%), Positives = 171/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ ++R+SG T K +A K+ KPRYA D ++ + LD+G+ LWFP
Sbjct: 15 GRGGIGILRISGSKT----KEVALAILGKLPKPRYADYLPFRD-INGITLDQGIALWFPS 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E HG +++ +L + + +R A PGEFS+RAF NNK+DL Q EA+
Sbjct: 70 PHSFTGEDVLELHGHGGEVILDLLLKHVLIISDVRIARPGEFSERAFINNKIDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + A + ++G + + + S+EA I+F +++I N+L++
Sbjct: 130 ADLINANSEQAARSATNSLQGVFSNRIYQLIEKLTYIRTSIEAEINFPDEDI---NLLSS 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+ + +L+N + + + SV C AS
Sbjct: 187 EKIET-----------QLNN-----MMADLDSVYCAAS---------------------- 208
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
GSI +R G+K VI G PN GKSSL+N L + +IVT I G
Sbjct: 209 ------QGSI-------------LREGMKVVITGLPNAGKSSLLNALAGRNTAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRD++ ++++I G V ++DTAGLR ++ +
Sbjct: 250 TTRDILREYINIDGITVHIVDTAGLRNASNKV 281
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 14/125 (11%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
++I +TI A ++ G+ G+ ++R+SG T K +A K+PKPRYA D ++
Sbjct: 1 MSIIDTIVAQATPPGRGGIGILRISGSKT----KEVALAILGKLPKPRYADYLPFRD-IN 55
Query: 84 KVVLDEGLCLWFPR-HGKCGVSVIRVSGP------DTLNALKSMACYPDQKVSKPRYASL 136
+ LD+G+ LWFP H G V+ + G D L LK + D ++++P S
Sbjct: 56 GITLDQGIALWFPSPHSFTGEDVLELHGHGGEVILDLL--LKHVLIISDVRIARPGEFSE 113
Query: 137 RNIVD 141
R ++
Sbjct: 114 RAFIN 118
>gi|205422232|sp|Q12HM9.2|MNME_SHEDO RecName: Full=tRNA modification GTPase MnmE
Length = 453
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 172/340 (50%), Gaps = 72/340 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IR+SG N +MA KV K RYA + D + V+D+G+ L+F
Sbjct: 14 GRGGVGIIRISGDLATNV--AMAVLG--KVPKTRYADYCDFKDA-DDRVIDQGIALFFKG 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ ++ + ++ G+R A+PGEFS++AF N+KLDLTQ EA+
Sbjct: 69 PNSFTGEDVLELQGHGGQIVLDMLIKRVMQVSGVRIAKPGEFSEQAFLNDKLDLTQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E K L+ L E+ + + E++E
Sbjct: 129 ADLIDATSE-------QAAKSALQSLQGEFSKEV---------------HELVE------ 160
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI---IEDNILN 335
QV L VEA IDF ++E+ + I N
Sbjct: 161 ---QVTNLR---------------------------LYVEAAIDFPDEEVDFLSDGKIAN 190
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+ + +L ++ S K G IR G+K VI G PN GKSSL+N L K+ +IVT
Sbjct: 191 ALYRIIAKL-----DTVQDSAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESAIVTE 245
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I GTTRDV+ +H+ + G P+ ++DTAGLR T D +E G
Sbjct: 246 IAGTTRDVLREHIHLDGMPLHIIDTAGLRDTL-DTVEKIG 284
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IR+SG N +MA KVPK RYA + D +V+
Sbjct: 4 DTIVAQATAPGRGGVGIIRISGDLATNV--AMAVLG--KVPKTRYADYCDFKDADDRVI- 58
Query: 88 DEGLCLWF 95
D+G+ L+F
Sbjct: 59 DQGIALFF 66
>gi|21910288|ref|NP_664556.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS315]
gi|28895865|ref|NP_802215.1| tRNA modification GTPase TrmE [Streptococcus pyogenes SSI-1]
gi|342165126|sp|P0DG22.1|MNME_STRP3 RecName: Full=tRNA modification GTPase MnmE
gi|342165127|sp|P0DG23.1|MNME_STRPQ RecName: Full=tRNA modification GTPase MnmE
gi|21904483|gb|AAM79359.1| putative thiophene degradation protein F [Streptococcus pyogenes
MGAS315]
gi|28811115|dbj|BAC64048.1| putative thiophene degradation protein F [Streptococcus pyogenes
SSI-1]
Length = 458
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 171/337 (50%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D L +S+ + + + +I+DP + ++DE +
Sbjct: 18 GEGAIGIVRLSGTDALAIAQSVFKGKNLEQVASHTINYGHIIDPKTGTIIDEVMVSVMLA 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT E+ E HG IAV N IL L + G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 78 PKTFTRENVVEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTKRAFLNGRVDLTQAEAV 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L QL ++ RQ ILNT
Sbjct: 137 MDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQ-----------------------EILNT 173
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ +R
Sbjct: 174 -----------------------------------LAQVEVNIDYPEYDDVEEMTTALLR 198
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + +E + + K G +R G+ + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 199 EKTQEFQSLLENLLR-TAKRGKILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 257
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 258 TTRDVIEEYVNIKGVPLKLVDTAGIR-ETDDLVEQIG 293
>gi|19746040|ref|NP_607176.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS8232]
gi|209559376|ref|YP_002285848.1| tRNA modification GTPase TrmE [Streptococcus pyogenes NZ131]
gi|386317136|ref|YP_006013300.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|408401759|ref|YP_006859723.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Streptococcus dysgalactiae subsp. equisimilis RE378]
gi|417751337|ref|ZP_12399648.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
gi|417927145|ref|ZP_12570533.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|25009494|sp|Q8P161.1|MNME_STRP8 RecName: Full=tRNA modification GTPase MnmE
gi|166234824|sp|Q1JH22.1|MNME_STRPD RecName: Full=tRNA modification GTPase MnmE
gi|19748208|gb|AAL97675.1| putative thiophene degradation protein F [Streptococcus pyogenes
MGAS8232]
gi|94543924|gb|ABF33972.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Streptococcus pyogenes MGAS10270]
gi|209540577|gb|ACI61153.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Streptococcus
pyogenes NZ131]
gi|323127423|gb|ADX24720.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|333772881|gb|EGL49683.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
gi|340765019|gb|EGR87545.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|407967988|dbj|BAM61226.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Streptococcus dysgalactiae subsp. equisimilis RE378]
Length = 458
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 171/337 (50%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D L +S+ + + + +I+DP + ++DE +
Sbjct: 18 GEGAIGIVRLSGTDALAIAQSVFKGKNLEQVASHTINYGHIIDPKTGTIIDEVMVSVMLA 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT E+ E HG IAV N IL L + G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 78 PKTFTRENVVEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTKRAFLNGRVDLTQAEAV 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L QL ++ RQ ILNT
Sbjct: 137 MDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQ-----------------------EILNT 173
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ +R
Sbjct: 174 -----------------------------------LAQVEVNIDYPEYDDVEEMTTALLR 198
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + +E + + K G +R G+ + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 199 EKTQEFQSLLENLLR-TAKRGKILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 257
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 258 TTRDVIEEYVNIKGVPLKLVDTAGIR-ETDDLVEQIG 293
>gi|322389428|ref|ZP_08062982.1| thiophene and furan oxidation protein ThdF [Streptococcus
parasanguinis ATCC 903]
gi|321143916|gb|EFX39340.1| thiophene and furan oxidation protein ThdF [Streptococcus
parasanguinis ATCC 903]
Length = 466
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 114/339 (33%), Positives = 173/339 (51%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + +SK +L +IVDP + +LDE +
Sbjct: 26 GEGAIGIVRLSGTDSFAIAQKI--FKGKDLSKVASHTLNYGHIVDPDKDEILDEVMVGAM 83
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL + + G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 84 RSPKTFTREDIIEINTHGGIAVTNEILQLVIR-EGARLAEPGEFTKRAFLNGRVDLTQAE 142
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL
Sbjct: 143 AVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EIL 179
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
NT LA VE ID+ E + +E+
Sbjct: 180 NT-----------------------------------LAQVEVNIDYPEYDDVEEATTEI 204
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+R + + + ++ + + G +R GI + I+G PNVGKSSL+N L +++ +IVT I
Sbjct: 205 IREKTSEFEALLTNLLKTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREEKAIVTDI 263
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 264 EGTTRDVIEEYVNINGVPLKLVDTAGIR-ETEDIVEQIG 301
>gi|118602976|ref|YP_904191.1| tRNA modification GTPase TrmE [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|166234818|sp|A1AXR3.1|MNME_RUTMC RecName: Full=tRNA modification GTPase MnmE
gi|118567915|gb|ABL02720.1| tRNA modification GTPase trmE [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
Length = 447
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 119/340 (35%), Positives = 176/340 (51%), Gaps = 75/340 (22%)
Query: 100 KCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKP 159
K G+ V+RVSGP K M + V KPRYA D ++ + D+G+ L+FPKP
Sbjct: 17 KGGIGVVRVSGPLCKVIAKKMLGF----VPKPRYAHYGLFFDQENDEI-DKGIALFFPKP 71
Query: 160 NSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALG 219
+SFTGED EFQ HG ++V+ +L ++ + G +PA+PGEFSKRAF N K++L Q EA+
Sbjct: 72 HSFTGEDILEFQGHGGMSVMCCLLESVISM-GAKPADPGEFSKRAFLNGKMNLVQAEAVA 130
Query: 220 DLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTV 279
D+I A ++ + A + G +FS N +N +
Sbjct: 131 DMINANSKRASKSAFRSLSG------------------------EFS-------NQVNAL 159
Query: 280 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRS 339
+V+L VEA IDFS++EI + ++
Sbjct: 160 TKSIVELR---------------------------VFVEATIDFSDEEI------DFLQF 186
Query: 340 QVVQLHG-SIEKHIEL---SNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+ V+L I++ +E S GV +R G+ VI G+PN GKSSL+N L Q+ +IVT
Sbjct: 187 EQVKLKAKGIKQAVETILKSATQGVILREGLNVVIAGKPNAGKSSLLNALTQESSAIVTD 246
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I GTTRDV+++ + + G P+ ++DTAGL + D IE EG
Sbjct: 247 IAGTTRDVLKETICVNGMPLNIIDTAGLH-DSDDKIEKEG 285
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 123/292 (42%), Gaps = 79/292 (27%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
+ TI AL+SG K G+ V+RVSGP K M + VPKPRYA D + +
Sbjct: 5 ETTICALASGVCKGGIGVVRVSGPLCKVIAKKMLGF----VPKPRYAHYGLFFDQENDEI 60
Query: 87 LDEGLCLWFPR-HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSE 145
D+G+ L+FP+ H G ++ G ++ +
Sbjct: 61 -DKGIALFFPKPHSFTGEDILEFQGHGGMSVM---------------------------- 91
Query: 146 VVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAF 205
CC + +VI+ +GA PG EFSKRAF
Sbjct: 92 ---------------------CCLLE-----SVIS--MGAKPADPG-------EFSKRAF 116
Query: 206 FNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDF 265
N K++L Q EA+ D+I A ++ + A + G + + I+E VEA IDF
Sbjct: 117 LNGKMNLVQAEAVADMINANSKRASKSAFRSLSGEFSNQVNALTKSIVELRVFVEATIDF 176
Query: 266 SEDEIIEDNILNTVRSQVVQLHG-SIEKHIEL---SNKCGVRIRSGIKSVIC 313
S++EI + ++ + V+L I++ +E S GV +R G+ VI
Sbjct: 177 SDEEI------DFLQFEQVKLKAKGIKQAVETILKSATQGVILREGLNVVIA 222
>gi|418086745|ref|ZP_12723915.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47033]
gi|418202285|ref|ZP_12838715.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA52306]
gi|419455415|ref|ZP_13995375.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae EU-NP04]
gi|421236158|ref|ZP_15692759.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2071004]
gi|421285385|ref|ZP_15736162.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA60190]
gi|421307285|ref|ZP_15757929.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA60132]
gi|353759006|gb|EHD39592.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47033]
gi|353868088|gb|EHE47978.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA52306]
gi|379629872|gb|EHZ94466.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae EU-NP04]
gi|395605077|gb|EJG65209.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2071004]
gi|395887364|gb|EJG98379.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA60190]
gi|395907892|gb|EJH18777.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA60132]
Length = 457
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 167/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTNLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|269962685|ref|ZP_06177030.1| tRNA modification GTPase [Vibrio harveyi 1DA3]
gi|424048390|ref|ZP_17785943.1| tRNA modification GTPase TrmE [Vibrio cholerae HENC-03]
gi|269832608|gb|EEZ86722.1| tRNA modification GTPase [Vibrio harveyi 1DA3]
gi|408882629|gb|EKM21435.1| tRNA modification GTPase TrmE [Vibrio cholerae HENC-03]
Length = 453
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 168/335 (50%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP +A K KPRYA VLD+G+ L+FP
Sbjct: 14 GRGGVGIIRVSGPKA----NQVALEVTGKTLKPRYAEYLPF-QAEDGTVLDQGIALYFPN 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ ++ + + G+R A PGEFS+RAF N+K+DLTQ EA+
Sbjct: 69 PHSFTGEDVLELQGHGGPVVMDMLIKRILGIDGVRAARPGEFSERAFLNDKMDLTQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S +E
Sbjct: 129 ADL-----------------------------------------IDASSEE--------A 139
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
+S + L G + RI++ ++S+I L VEA IDF E+EI + D ++
Sbjct: 140 AKSALQSLQGQFSQ----------RIQTLVESLIHLRIYVEAAIDFPEEEIDFLADGKVS 189
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
++ ++ K +N+ G +R G+K VI G PN GKSSL+N L K+ +IVT
Sbjct: 190 GDLQTIIDNLDAVRKE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTD 245
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 246 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 280
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP +A K KPRYA VL
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPKA----NQVALEVTGKTLKPRYAEYLPF-QAEDGTVL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALYFPNPHSFTGEDVLELQG 82
>gi|28896776|ref|NP_796381.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus RIMD
2210633]
gi|153838496|ref|ZP_01991163.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus AQ3810]
gi|260361954|ref|ZP_05774959.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus K5030]
gi|260876535|ref|ZP_05888890.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus AN-5034]
gi|260897408|ref|ZP_05905904.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus Peru-466]
gi|417321630|ref|ZP_12108166.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus 10329]
gi|31340459|sp|Q87TR6.1|MNME_VIBPA RecName: Full=tRNA modification GTPase MnmE
gi|28804984|dbj|BAC58265.1| thiophene and furan oxidation protein ThdF [Vibrio parahaemolyticus
RIMD 2210633]
gi|149748119|gb|EDM58978.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus AQ3810]
gi|308087879|gb|EFO37574.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus Peru-466]
gi|308090361|gb|EFO40056.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus AN-5034]
gi|308114188|gb|EFO51728.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus K5030]
gi|328471230|gb|EGF42132.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus 10329]
Length = 453
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 167/335 (49%), Gaps = 71/335 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP +A K KPRYA VLD+G+ L+FP
Sbjct: 14 GRGGVGIIRVSGPKA----NQVALEVTGKTLKPRYAEYLPF-QAEDGTVLDQGIALYFPN 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ ++ + + G+R A PGEFS+RAF N+K+DLTQ EA+
Sbjct: 69 PHSFTGEDVLELQGHGGPVVMDMLIKRILGIAGVRAARPGEFSERAFLNDKMDLTQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S +E
Sbjct: 129 ADL-----------------------------------------IDASSEE--------A 139
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
+S + L G + RI++ ++S+I L VEA IDF E+EI + D +
Sbjct: 140 AKSALQSLQGQFSQ----------RIQTLVESLIHLRIYVEAAIDFPEEEIDFLADGKVA 189
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
++ ++ K +N+ G +R G+K VI G PN GKSSL+N L K+ +IVT
Sbjct: 190 GDLQAIIDNLDAVRKE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTD 245
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 246 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 280
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP +A K KPRYA VL
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPKA----NQVALEVTGKTLKPRYAEYLPF-QAEDGTVL 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALYFPNPHSFTGEDVLELQG 82
>gi|238797848|ref|ZP_04641340.1| tRNA modification GTPase mnmE [Yersinia mollaretii ATCC 43969]
gi|238718264|gb|EEQ10088.1| tRNA modification GTPase mnmE [Yersinia mollaretii ATCC 43969]
Length = 454
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 120/352 (34%), Positives = 174/352 (49%), Gaps = 75/352 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG +++ K+ KPRYA D V LD+G+ L+FP
Sbjct: 15 GRGGVGILRVSGRAAAAVAQAVLG----KLPKPRYADYLPFKD-VDGSTLDQGIALYFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LP LR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILALPELRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL ID S ++
Sbjct: 130 ADL-----------------------------------------IDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
RS V L G+ VRI ++++ L VEA IDF ++EI + D
Sbjct: 141 ARSAVNSLQGAFS----------VRIHQLVEALTHLRIYVEAAIDFPDEEIDFLSDG--- 187
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+ Q+ + +E+ + + G +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 188 KIEGQLNGVMAELEQ-VRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 246
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI----IETEGNLLEKNNQ 443
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++ IE N +E+ ++
Sbjct: 247 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADR 298
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS 83
++ +TI A ++ G+ GV ++RVSG +++ K+PKPRYA D V
Sbjct: 1 MSATDTIVAQATPPGRGGVGILRVSGRAAAAVAQAVLG----KLPKPRYADYLPFKD-VD 55
Query: 84 KVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRN 138
LD+G+ L+FP + G V+ + GP L+ LK + P+ ++++P S R
Sbjct: 56 GSTLDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPELRIARPGEFSERA 115
Query: 139 IVD 141
++
Sbjct: 116 FLN 118
>gi|146278700|ref|YP_001168859.1| tRNA modification GTPase TrmE [Rhodobacter sphaeroides ATCC 17025]
gi|205415803|sp|A4WVZ0.1|MNME_RHOS5 RecName: Full=tRNA modification GTPase MnmE
gi|145556941|gb|ABP71554.1| tRNA modification GTPase trmE [Rhodobacter sphaeroides ATCC 17025]
Length = 428
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 115/331 (34%), Positives = 171/331 (51%), Gaps = 70/331 (21%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKP--RYASLRNIVDPVSEVVLDEGLCLW 155
GK GV+V+R+SGP A +++A + VS P R A+LR + + VLDE L L
Sbjct: 11 RGKAGVAVLRLSGP---QAYEAVAAF---GVSLPEVRRAALRRLT--WNGEVLDEALILL 62
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
F + SFTGE E +HGS A ++++L AL++LPGLR A+ GEF++RA N +LDL Q
Sbjct: 63 FAEGASFTGERSAEIHLHGSAAAVSSVLQALSELPGLRLADAGEFTRRALDNGRLDLAQV 122
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
E L DL+ ++E + Q+
Sbjct: 123 EGLADLL--DSETEAQR------------------------------------------- 137
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILN 335
R + G+I K E R RS + L +EA IDF+ DE + ++
Sbjct: 138 ----RQAMRVFSGAIGKRTE-------RWRSDLIRAAAL--LEATIDFA-DEDVPVDVTP 183
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
VR + +L +++ ++ ++ RIR G + I+G PN GKS+L+N L Q++ +I +
Sbjct: 184 EVRGLLERLISDLKREVD-GSRVAERIRDGFEVAIIGAPNAGKSTLLNALAQREAAITSE 242
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426
+ GTTRDVIE +++GG V LLDTAGLR T
Sbjct: 243 VAGTTRDVIEVRMNLGGLAVTLLDTAGLRET 273
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI+AL+S GK GV+V+R+SGP A+ + +P+ R A+LR + + VL
Sbjct: 2 DTIYALASARGKAGVAVLRLSGPQAYEAVAAFGV----SLPEVRRAALRRLT--WNGEVL 55
Query: 88 DEGLCLWF 95
DE L L F
Sbjct: 56 DEALILLF 63
>gi|406577036|ref|ZP_11052656.1| tRNA modification GTPase TrmE [Streptococcus sp. GMD6S]
gi|404460396|gb|EKA06662.1| tRNA modification GTPase TrmE [Streptococcus sp. GMD6S]
Length = 457
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 115/339 (33%), Positives = 172/339 (50%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + +SK +L +I+DP + V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKI--FKGKDLSKVASHTLNYGHIIDPQTGKVMDEVMVGAM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 KSPKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL
Sbjct: 134 AVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EIL 170
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
NT LA VE ID+ E + +E+
Sbjct: 171 NT-----------------------------------LAQVEVNIDYPEYDDVEEATTAV 195
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
VR + ++ + + + + G +R GI + I+G PNVGKSSL+N L +++ +IVT I
Sbjct: 196 VREKTMEFEQLLTNLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREEKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 255 AGTTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|312882243|ref|ZP_07741989.1| tRNA modification GTPase TrmE [Vibrio caribbenthicus ATCC BAA-2122]
gi|309370087|gb|EFP97593.1| tRNA modification GTPase TrmE [Vibrio caribbenthicus ATCC BAA-2122]
Length = 453
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 165/337 (48%), Gaps = 75/337 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYAS-LRNIVDPVSEVVLDEGLCLWFP 157
G+ GV +IRVSGP +A K +PRYA L +E+ D+G+ L+FP
Sbjct: 14 GRGGVGIIRVSGP----LATQVASEITGKDLRPRYAEYLAFKAQDGTEI--DQGIALYFP 67
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P+SFTGED E Q HG V++ ++ + +PGLR A PGEFS+RAF N+KLDL Q EA
Sbjct: 68 NPHSFTGEDVLELQGHGGPVVMDMLIKRILTIPGLRTARPGEFSERAFLNDKLDLAQAEA 127
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DLI A +E
Sbjct: 128 IADLIDASSE-------------------------------------------------E 138
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI---IEDNI 333
+S ++ L G+ RI + ++S+I L VEA IDF E+EI + +
Sbjct: 139 AAKSALMSLQGAFSG----------RIHTLVESLIHLRIYVEAAIDFPEEEIDFLADGKV 188
Query: 334 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIV 393
++S + L + G +R G+K VI G PN GKSSL+N L K+ +IV
Sbjct: 189 AGDLQSIIDNLAA-----VRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIV 243
Query: 394 TSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
T I GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 244 TDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 280
>gi|115398542|ref|XP_001214860.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114191743|gb|EAU33443.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 367
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 109/321 (33%), Positives = 164/321 (51%), Gaps = 71/321 (22%)
Query: 121 ACYPDQKVSKPRYASLRNIVDPV----SEVVLDEG-LCLWFPKPNSFTGEDCCEFQVHGS 175
A P +PR A++R + DP S VLD G L L+FP P + TGED EF +HG
Sbjct: 4 ALCPKGSFPRPRVAAVRALYDPTTPPSSNSVLDSGALVLYFPGPKTVTGEDVLEFHLHGG 63
Query: 176 IAVINAILGALTKLPG----LRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQ 231
A++ ++L A+++ +R AEPGEF++RAF NN+LDL Q EALGD + A+TE QR+
Sbjct: 64 PAIVKSVLTAISRTNRDECLVRYAEPGEFTRRAFLNNRLDLPQIEALGDTLTADTEQQRR 123
Query: 232 KALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIE 291
A+ L + Y +W R Q++ G +E
Sbjct: 124 LAVRGASDALSKRYEQW-------------------------------RQQLLYARGELE 152
Query: 292 KHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIE---DNILNTVRSQVVQLHGSI 348
A IDF+ED+ + D ++++V SQV L I
Sbjct: 153 ---------------------------ALIDFAEDQHFDESSDELVHSVASQVQALRVQI 185
Query: 349 EKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHL 408
E HI+ ++K G +R GIK ++G PN GKSSL+N + K+ +IV++ GTTRD+++ +
Sbjct: 186 ELHIQNASK-GELLRHGIKVALLGAPNAGKSSLLNRIVGKEAAIVSTEEGTTRDIVDVGV 244
Query: 409 DIGGYPVILLDTAGLRTTTSD 429
D+ G+ L D AG+R+ +
Sbjct: 245 DLSGWYCKLGDMAGIRSEAGN 265
>gi|152990630|ref|YP_001356352.1| tRNA modification GTPase TrmE [Nitratiruptor sp. SB155-2]
gi|172048731|sp|A6Q3D6.1|MNME_NITSB RecName: Full=tRNA modification GTPase MnmE
gi|151422491|dbj|BAF69995.1| tRNA modification GTPase TrmE [Nitratiruptor sp. SB155-2]
Length = 448
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 113/338 (33%), Positives = 170/338 (50%), Gaps = 66/338 (19%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
+G ++++R+SGP +L+ + ++ D +PR A L + D SE + D+ + ++F
Sbjct: 16 YGVGSIAIVRISGPKSLSIAQKLSKKKD---IQPRVAHLVTLYDDQSEPI-DQAILIYFQ 71
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGED EFQ HG + V N IL L K G R A PGEFSKRAFFN K+DL++ EA
Sbjct: 72 APKSFTGEDVVEFQCHGGVVVANMILQELLK-AGARLANPGEFSKRAFFNGKIDLSEAEA 130
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ +I+A++E + Q+KG LK R+ ++ LA VE ID++E+++ +D
Sbjct: 131 IAKMIEAKSEDAAKILAKQIKGELKNYIENLREKLIRILAYVEVNIDYAEEDLPKD---- 186
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
L IE+ LN +
Sbjct: 187 --------LQEQIEQQ----------------------------------------LNDI 198
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+ ++ + I S+K + G K I+G+PN GKSSL+N L + +IV+ I
Sbjct: 199 QEEL--------QKIVASSKRRAGLIEGFKVAIIGKPNTGKSSLLNALLDYERAIVSDIA 250
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRD IE+ + IG + V +DTAG+R D IE G
Sbjct: 251 GTTRDTIEESVRIGTHLVRFVDTAGIR-EAHDTIEKIG 287
>gi|372267018|ref|ZP_09503066.1| tRNA modification GTPase mnmE [Alteromonas sp. S89]
Length = 457
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 122/336 (36%), Positives = 164/336 (48%), Gaps = 75/336 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ VIR+SGPD + + K KPR+A + + +LD+GL L+ P
Sbjct: 19 GRGGIGVIRLSGPDARKIGEQLCA----KSFKPRFAHYCDFAH--RDQLLDQGLALYLPG 72
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L AL ++ G R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 73 PNSFTGEDVVELQGHGGPVILDTLLAALIEM-GARQARPGEFSERAFLNDKLDLAQAEAI 131
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A T Q A L SL V FSE IED
Sbjct: 132 ADLIDAGTTQAAQNA-------------------LRSLQGV-----FSEK--IED----- 160
Query: 279 VRSQVVQLHGSIEKHIELSNK-CGVRIRSGIKSVICLASVEAYIDFSEDEI---IEDNIL 334
L+ K +RI VEA IDF E+EI + +
Sbjct: 161 -----------------LAEKLTHLRIY-----------VEAAIDFPEEEIDFLADGKVA 192
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
+ + + QL +E + G R G++ I G+PN GKSSL+N L K +IVT
Sbjct: 193 ADIEALLAQL-----DSVEAEARQGAITREGMQVAIAGKPNAGKSSLLNALAGKDSAIVT 247
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
I GTTRDV+ +H+ I G P+ + DTAGLR + +
Sbjct: 248 DIAGTTRDVLREHIHIDGMPLHIADTAGLRESPDQV 283
>gi|313890071|ref|ZP_07823706.1| tRNA modification GTPase TrmE [Streptococcus pseudoporcinus SPIN
20026]
gi|416852297|ref|ZP_11909442.1| tRNA modification GTPase TrmE [Streptococcus pseudoporcinus LQ
940-04]
gi|313121432|gb|EFR44536.1| tRNA modification GTPase TrmE [Streptococcus pseudoporcinus SPIN
20026]
gi|356739786|gb|EHI65018.1| tRNA modification GTPase TrmE [Streptococcus pseudoporcinus LQ
940-04]
Length = 458
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 169/337 (50%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D L ++ + + +I++P ++ +LDE +
Sbjct: 18 GEGAIGIVRLSGTDALKIANTVFKGKNLHEVASHTINYGHIINPDNQEILDEVMVTVMLA 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT E+ E HG IAV N IL L K G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 78 PKTFTRENVIEINTHGGIAVTNEILQLLIK-QGARMAEPGEFTKRAFLNGRVDLTQAEAV 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L QL + RQ ILNT
Sbjct: 137 MDIIRAKTDKAMNIAVKQLDGSLSQLINNTRQ-----------------------EILNT 173
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ +R
Sbjct: 174 -----------------------------------LAQVEVNIDYPEYDDVEEMTTALLR 198
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ Q +E + + K G +R G+ + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 199 EKTQQFQALLENLLR-TAKRGKILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 257
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 258 TTRDVIEEYVNIKGVPLKLIDTAGIR-ETDDLVEKIG 293
>gi|90421001|ref|ZP_01228905.1| putative tRNA modification GTPase [Aurantimonas manganoxydans
SI85-9A1]
gi|90334779|gb|EAS48555.1| putative tRNA modification GTPase [Aurantimonas manganoxydans
SI85-9A1]
Length = 473
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 118/337 (35%), Positives = 168/337 (49%), Gaps = 69/337 (20%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+V+RVSGP + ++ +A V R ASLR D ++ +D G+ L+FP P
Sbjct: 17 AGVAVVRVSGPAARDVMERLAG----SVPPERRASLRRFRD-AADRTIDRGIALFFPGPG 71
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
S TGED EF +HG AV+ A L A T +PG+R A GEF++R F N ++D
Sbjct: 72 SVTGEDLAEFHLHGGRAVVAAFLEAATGIPGVRLAVAGEFTRRGFENGRID--------- 122
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
L +AE L L + AS EA R
Sbjct: 123 LTEAE--------------GLADLLA----------ASTEAQ----------------RR 142
Query: 281 SQVVQLHGSIEKHIE--LSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
V Q G++ E + + R A +EA DF+++ ++D++ + V
Sbjct: 143 MAVAQAGGALRSLYEGWMRDLTNAR-----------AMIEASFDFADEGDVDDDVASGVE 191
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
QV + ++ H+ +++ G +R G K IVG PN GKSSL+N L ++++IVT IPG
Sbjct: 192 RQVAVVAAAMRAHLAKADR-GEILREGFKVAIVGAPNAGKSSLLNALADREVAIVTEIPG 250
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE LD+GG PV DTAG+R T+D IE G
Sbjct: 251 TTRDVIEATLDLGGIPVRFSDTAGIR-ETADRIEAMG 286
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI ALSSG GV+V+RVSGP + ++ +A VP R ASLR D + +
Sbjct: 5 DTIAALSSGTLPAGVAVVRVSGPAARDVMERLAG----SVPPERRASLRRFRDAADRTI- 59
Query: 88 DEGLCLWFPRHGKC 101
D G+ L+FP G
Sbjct: 60 DRGIALFFPGPGSV 73
>gi|309800286|ref|ZP_07694459.1| tRNA modification GTPase TrmE [Streptococcus infantis SK1302]
gi|308116070|gb|EFO53573.1| tRNA modification GTPase TrmE [Streptococcus infantis SK1302]
Length = 457
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 116/339 (34%), Positives = 172/339 (50%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + +SK +L +IVDP + V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKI--FKGKDLSKVASHTLNYGHIVDPQTGKVMDEVMVGAM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 KSPKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARMAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL
Sbjct: 134 AVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EIL 170
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
NT LA VE ID+ E + +E+
Sbjct: 171 NT-----------------------------------LAQVEVNIDYPEYDDVEEATTAV 195
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
VR + ++ + ++ + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 196 VREKTLEFEQLLTNLLKTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 255 AGTTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|225856671|ref|YP_002738182.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae P1031]
gi|225725175|gb|ACO21027.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae P1031]
Length = 457
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 167/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTNLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|417793393|ref|ZP_12440671.1| tRNA modification GTPase TrmE [Streptococcus oralis SK255]
gi|334273121|gb|EGL91472.1| tRNA modification GTPase TrmE [Streptococcus oralis SK255]
Length = 457
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 116/339 (34%), Positives = 171/339 (50%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + +SK +L +IVDP + V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKI--FKGKDLSKVASHTLNYGHIVDPQTGKVMDEVMVGAM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 KSPKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ DLI+A+T+ A+ Q+ G+L L + RQ IL
Sbjct: 134 AVMDLIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EIL 170
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
NT LA VE ID+ E + +E+
Sbjct: 171 NT-----------------------------------LAQVEVNIDYPEYDDVEEATTAV 195
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
VR + ++ + + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 196 VREKTMEFEQLLTNLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 255 AGTTRDVIEEYVNINGVPLKLIDTAGIR-ETDDVVEQIG 292
>gi|312867712|ref|ZP_07727918.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis F0405]
gi|311096775|gb|EFQ55013.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis F0405]
Length = 457
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 114/339 (33%), Positives = 174/339 (51%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + +++SK +L +IVDP + +LDE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKI--FKGKELSKVASHTLNYGHIVDPDKDEILDEVMVGAM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL + + G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 RSPKTFTREDIIEINTHGGIAVTNEILQLVIR-EGARLAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL
Sbjct: 134 AVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EIL 170
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
NT LA VE ID+ E + +E+
Sbjct: 171 NT-----------------------------------LAQVEVNIDYPEYDDVEEATTEI 195
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+R + + + ++ + + G +R GI + I+G PNVGKSSL+N L +++ +IVT I
Sbjct: 196 IREKTREFEALLTNLLKTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREEKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 255 EGTTRDVIEEYVNINGVPLKLVDTAGIR-ETEDILEQIG 292
>gi|372281660|ref|ZP_09517696.1| tRNA modification GTPase TrmE [Oceanicola sp. S124]
Length = 427
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 116/336 (34%), Positives = 164/336 (48%), Gaps = 74/336 (22%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GVSVIR+SGP AL +PR A+LR + D + VLD+ L L F
Sbjct: 12 GRAGVSVIRISGPGAFPALTRFGL----TAPEPRAAALRLLRD--GDEVLDQALLLAFAG 65
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E +HGS A++++ L L ++ GLR AEPGEF++RA N+K+D
Sbjct: 66 PASFTGEDVIELHLHGSPAIVSSTLRILGEIDGLRMAEPGEFTRRALENSKMD------- 118
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
LA VE D + E
Sbjct: 119 -------------------------------------LAQVEGLADLIDSET------EA 135
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASV-EAYIDFSEDEIIEDNILNTV 337
R Q ++ S K G ++ K +I A++ EA IDF+++++ D V
Sbjct: 136 QRRQAQRV---------FSGKLGEVVQGWRKDLIRAAALLEAVIDFADEDVPVD-----V 181
Query: 338 RSQVVQLHGSIEKHIELSNK---CGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
R +VVQL + + K R+R G + I+G PN GKS+L+NFL ++ +I +
Sbjct: 182 RPEVVQLLDGVSASLAAQAKGAEVAERVRQGFEVAILGAPNAGKSTLLNFLAGREAAITS 241
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
SI GTTRDVIE +D+ G PV LLDTAG+R T ++
Sbjct: 242 SIAGTTRDVIEVRMDLRGLPVTLLDTAGIRETEDEV 277
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFAL+S G+ GVSVIR+SGP AL P+PR A+LR + D VL
Sbjct: 2 DTIFALASAPGRAGVSVIRISGPGAFPALTRFGL----TAPEPRAAALRLLRD--GDEVL 55
Query: 88 DEGLCLWF 95
D+ L L F
Sbjct: 56 DQALLLAF 63
>gi|260584383|ref|ZP_05852130.1| tRNA modification GTPase TrmE [Granulicatella elegans ATCC 700633]
gi|260157901|gb|EEW92970.1| tRNA modification GTPase TrmE [Granulicatella elegans ATCC 700633]
Length = 476
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 117/342 (34%), Positives = 171/342 (50%), Gaps = 69/342 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSM-AC----YPDQKVSKPRYASLRNIVDPVSEVVLDEGLC 153
G+ + ++R+SG ++ S+ C +QK Y +IVDP S V DE +
Sbjct: 30 GEGAIGIVRISGDLAISIASSIYQCGTKQLEEQKTHTIHYG---HIVDPKSGEVYDEVMV 86
Query: 154 LWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLT 213
P +FT ED E HG I IN +L + ++ G R AEPGEF+KRAF N ++DL+
Sbjct: 87 SVLRAPKTFTREDIVEINCHGGIVAINRVLQLVLRM-GARLAEPGEFTKRAFLNGRIDLS 145
Query: 214 QTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIED 273
Q EA+ DLI+A+T+ Q A+ Q+ G L L RQ
Sbjct: 146 QAEAVMDLIRAKTDKSMQLAMRQLDGQLSHLIQNLRQ----------------------- 182
Query: 274 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNI 333
ILNT LA VE ID+ E + +E+
Sbjct: 183 EILNT-----------------------------------LAQVEVNIDYPEYDDVEEMT 207
Query: 334 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIV 393
L +R + Q+ I + +++ G +R G+K+ IVG PNVGKSSL+N L +++ +IV
Sbjct: 208 LQLLREKTQQVLQGIRALLNTASQ-GKILRDGLKTAIVGRPNVGKSSLLNVLLREEKAIV 266
Query: 394 TSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
T I GTTRD IE+++++ G P+ L+DTAG+R T DI+E G
Sbjct: 267 TDIAGTTRDTIEEYVNVRGVPLQLIDTAGIR-ETDDIVEKIG 307
>gi|192288728|ref|YP_001989333.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris TIE-1]
gi|226704785|sp|B3Q8A8.1|MNME_RHOPT RecName: Full=tRNA modification GTPase MnmE
gi|192282477|gb|ACE98857.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris TIE-1]
Length = 441
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 109/333 (32%), Positives = 169/333 (50%), Gaps = 65/333 (19%)
Query: 103 VSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSF 162
++++RVSG + L+++ + PR A +R + ++D+G+ LWFP P S
Sbjct: 20 IAILRVSGSRAGDVLRALTG----SLPPPRRA-VRCDLRSRDGDLIDDGVALWFPTPASA 74
Query: 163 TGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLI 222
TGED E +HGS AV A++ L+ G+RPAEPGEF++R F N KLDLT+ E L DLI
Sbjct: 75 TGEDVAELHIHGSRAVAAALIKTLSAFEGVRPAEPGEFTRRGFENGKLDLTEAEGLDDLI 134
Query: 223 QAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQ 282
A+T+ QR++AL Q+ G L +WR I+E+LA VEA IDFS++ + D ++ R++
Sbjct: 135 HADTDAQRRQALRQLGGVLGDRARQWRDQIIEALALVEAGIDFSDEGDVADELMGPARAK 194
Query: 283 VVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVV 342
+ +L I + + + G ++R G+ V+ +A N +S ++
Sbjct: 195 IAELSAEIAEVLAEQGR-GEKLRDGM--VVAIAGPP----------------NVGKSTLI 235
Query: 343 QLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRD 402
R + V + P+ G + RD
Sbjct: 236 N-------------------RLARREVAIVSPHAGTT---------------------RD 255
Query: 403 VIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
VIE LD+ GYPV ++DTAGLR + D +E EG
Sbjct: 256 VIEIQLDLDGYPVTVIDTAGLR-DSDDPVEQEG 287
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TIFAL++G ++++RVSG + L+++ +P PR A +R + ++
Sbjct: 6 QTIFALATGPLPSAIAILRVSGSRAGDVLRALTG----SLPPPRRA-VRCDLRSRDGDLI 60
Query: 88 DEGLCLWFP 96
D+G+ LWFP
Sbjct: 61 DDGVALWFP 69
>gi|417935893|ref|ZP_12579210.1| tRNA modification GTPase TrmE [Streptococcus infantis X]
gi|343402802|gb|EGV15307.1| tRNA modification GTPase TrmE [Streptococcus infantis X]
Length = 457
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 114/339 (33%), Positives = 173/339 (51%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + +SK +L +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKI--FKGKDLSKVASHTLNYGHIIDPLTGKVMDEVMVGAM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 RSPKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARMAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL
Sbjct: 134 AVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EIL 170
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
NT LA VE ID+ E + +E+
Sbjct: 171 NT-----------------------------------LAQVEVNIDYPEYDDVEEATTAV 195
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
VR + ++ + ++ + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 196 VREKTMEFEQLLTNLLKTARR-GKILREGIATAIIGRPNVGKSSLLNNLLREDKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 255 AGTTRDVIEEYVNINGVPLKLIDTAGIR-ETDDVVEQIG 292
>gi|398944808|ref|ZP_10671477.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM41(2012)]
gi|398157791|gb|EJM46164.1| tRNA modification GTPase TrmE [Pseudomonas sp. GM41(2012)]
Length = 456
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 122/342 (35%), Positives = 171/342 (50%), Gaps = 84/342 (24%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ GV ++R+SGP A K+ + + KPR+A + EV LD+G+ L+FP
Sbjct: 15 QGRGGVGIVRISGPLASVAAKAFSG----RELKPRFAHYGPFLSENDEV-LDQGIALYFP 69
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
PNSFTGED E Q HG V++ +L +L G R A PGEFS+RAF N+KLDL Q EA
Sbjct: 70 GPNSFTGEDVLELQGHGGPVVLDMLLKRCLEL-GCRLARPGEFSERAFLNDKLDLAQAEA 128
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DLI+A + + AL ++G FSE
Sbjct: 129 IADLIEASSAQAARNALRSLQGA------------------------FSE---------- 154
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI--IED---- 331
++H E+ I G+RI VEA IDF E+EI + D
Sbjct: 155 -------RVHNLTEQLI------GLRI-----------YVEAAIDFPEEEIDFLADGHVL 190
Query: 332 NILNTVR---SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQK 388
++L+ VR S V++ G G +R G+ VI G PN GKSSL+N L +
Sbjct: 191 SMLDKVRDELSTVLREAGQ-----------GALLRDGMTVVIAGRPNAGKSSLLNALAGR 239
Query: 389 QISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
+ +IVT I GTTRD++ +H+ I G P+ ++DTAGLR T +
Sbjct: 240 EAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTDDQV 281
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 102/244 (41%), Gaps = 67/244 (27%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
+ TI A+++ G+ GV ++R+SGP A K+ + + KPR+A + + V
Sbjct: 5 RETIAAVATAQGRGGVGIVRISGPLASVAAKAFSG----RELKPRFAHYGPFLSENDE-V 59
Query: 87 LDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEV 146
LD+G+ L+FP GP++ + Q P V
Sbjct: 60 LDQGIALYFP-------------GPNSFTGEDVLEL---QGHGGP--------------V 89
Query: 147 VLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFF 206
VLD L + C E LG PG EFS+RAF
Sbjct: 90 VLDMLL------------KRCLE-------------LGCRLARPG-------EFSERAFL 117
Query: 207 NNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFS 266
N+KLDL Q EA+ DLI+A + + AL ++G + + ++ VEA IDF
Sbjct: 118 NDKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSERVHNLTEQLIGLRIYVEAAIDFP 177
Query: 267 EDEI 270
E+EI
Sbjct: 178 EEEI 181
>gi|384920464|ref|ZP_10020471.1| tRNA modification GTPase TrmE [Citreicella sp. 357]
gi|384465526|gb|EIE50064.1| tRNA modification GTPase TrmE [Citreicella sp. 357]
Length = 427
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 120/333 (36%), Positives = 169/333 (50%), Gaps = 67/333 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+VIR+SGP + A++ + + +PR ++LR + DP E+ LDE L L F +
Sbjct: 12 GKAGVAVIRISGPLSWEAVRLLVGV----IPQPRQSTLRKLRDPDGEI-LDEALVLVFDQ 66
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
SFTGE E +HGSIA+ A+L L + GLR AE GEF++RA N+ LDLTQ
Sbjct: 67 GASFTGERVAELHLHGSIAIQRAVLRVLEGIAGLRMAEAGEFTRRALENDCLDLTQ---- 122
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
VEA D E E +
Sbjct: 123 ----------------------------------------VEALSDLIEAET------ES 136
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASV-EAYIDFSEDEIIEDNILNTV 337
R Q +++ S G RI S + +I A++ EA IDF+++E+ D + V
Sbjct: 137 QRIQALRV---------FSGALGKRIESWRRMLIEAAALLEATIDFADEEVPVD-VTGDV 186
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+++ + ++ + I+ N RIR+G + I+G PNVGKSSL+N L + +I + I
Sbjct: 187 LARITAVISAVGREIDGMN-AAERIRTGFEVAILGAPNVGKSSLLNALAGRDAAITSDIA 245
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRDVIE +DI G PV LLDTAGLR T I
Sbjct: 246 GTTRDVIEVRMDIQGLPVTLLDTAGLRETQDPI 278
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 5/68 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFAL+S GK GV+VIR+SGP + A++ + +P+PR ++LR + DP + +L
Sbjct: 2 DTIFALASAPGKAGVAVIRISGPLSWEAVRLLVGV----IPQPRQSTLRKLRDPDGE-IL 56
Query: 88 DEGLCLWF 95
DE L L F
Sbjct: 57 DEALVLVF 64
>gi|383479966|ref|YP_005388860.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS15252]
gi|383493882|ref|YP_005411558.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS1882]
gi|378927956|gb|AFC66162.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS15252]
gi|378929610|gb|AFC68027.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS1882]
Length = 458
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 171/337 (50%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D L +S+ + + + +I+DP + ++DE +
Sbjct: 18 GEGAIGIVRLSGTDALAIAQSVFKGKNLEQVASHTINYGHIIDPKTGTIIDEVMVSVMLA 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT E+ E HG IAV N IL L + G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 78 PKTFTRENVVEINTHGGIAVTNEILQLLIR-QGARIAEPGEFTKRAFLNGRVDLTQAEAV 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L QL ++ RQ ILNT
Sbjct: 137 MDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQ-----------------------EILNT 173
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ +R
Sbjct: 174 -----------------------------------LAQVEVNIDYPEYDDVEEMTTALLR 198
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + +E + + K G +R G+ + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 199 EKTQEFQSLLENLLR-TAKRGKILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 257
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 258 TTRDVIEEYVNIKGVPLKLVDTAGIR-ETDDLVEQIG 293
>gi|417940470|ref|ZP_12583758.1| tRNA modification GTPase TrmE [Streptococcus oralis SK313]
gi|343389351|gb|EGV01936.1| tRNA modification GTPase TrmE [Streptococcus oralis SK313]
Length = 457
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 116/339 (34%), Positives = 171/339 (50%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + +SK +L +IVDP + V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKI--FKGKDLSKVASHTLNYGHIVDPQTGKVMDEVMVGAM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 KSPKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL
Sbjct: 134 AVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EIL 170
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
NT LA VE ID+ E + +E+
Sbjct: 171 NT-----------------------------------LAQVEVNIDYPEYDDVEEATTAV 195
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
VR + ++ + + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 196 VRDKTMEFEQLLTNLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 255 AGTTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|444388286|ref|ZP_21186273.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PCS125219]
gi|444389852|ref|ZP_21187767.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PCS70012]
gi|444392405|ref|ZP_21190136.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PCS81218]
gi|444395454|ref|ZP_21192998.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0002]
gi|444397476|ref|ZP_21194959.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0006]
gi|444400077|ref|ZP_21197499.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0007]
gi|444403303|ref|ZP_21200407.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0008]
gi|444405123|ref|ZP_21202045.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0009]
gi|444408691|ref|ZP_21205324.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0010]
gi|444411183|ref|ZP_21207643.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0076]
gi|444413191|ref|ZP_21209507.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0153]
gi|444414337|ref|ZP_21210618.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0199]
gi|444417320|ref|ZP_21213365.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0360]
gi|444419498|ref|ZP_21215357.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0427]
gi|444422691|ref|ZP_21218338.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0446]
gi|444249900|gb|ELU56385.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PCS125219]
gi|444256315|gb|ELU62653.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PCS70012]
gi|444258097|gb|ELU64427.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0002]
gi|444260133|gb|ELU66441.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0006]
gi|444263454|gb|ELU69622.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PCS81218]
gi|444264687|gb|ELU70744.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0008]
gi|444267337|gb|ELU73243.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0007]
gi|444269518|gb|ELU75325.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0010]
gi|444273350|gb|ELU79023.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0153]
gi|444275063|gb|ELU80691.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0076]
gi|444275482|gb|ELU81108.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0009]
gi|444282523|gb|ELU87779.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0199]
gi|444283971|gb|ELU89139.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0360]
gi|444286727|gb|ELU91690.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0427]
gi|444287974|gb|ELU92879.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0446]
Length = 479
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 167/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +I+DP++ V+DE +
Sbjct: 39 GEGAIGIVRLSGTDSFAIAQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 98
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 99 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 157
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 158 MDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EILNT 194
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 195 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 219
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 220 EKTMEFEQLLTNLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 278
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 279 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 314
>gi|419791054|ref|ZP_14316710.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|392621409|gb|EIX03767.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
Length = 454
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 115/334 (34%), Positives = 165/334 (49%), Gaps = 69/334 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D V LD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-RDVAQEVLGKLPKPRYADYLPFKD-VDGSALDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q E
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAE-- 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
++ ID S ++
Sbjct: 128 ---------------------------------------AIADLIDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS + L G+ + + +R VEA IDF ++EI + L+ +
Sbjct: 141 ARSALNSLQGAFSARVNHLVEALTHLR---------IYVEAAIDFPDEEI---DFLSDGK 188
Query: 339 SQVVQLHGSIEK--HIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+ QL+G I + + G +R G+K VI G PNVGKSSL+N L ++ +IVT I
Sbjct: 189 IEA-QLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNVGKSSLLNALAGREAAIVTDI 247
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 248 AGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D V L
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-RDVAQEVLGKLPKPRYADYLPFKD-VDGSAL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118
>gi|417924330|ref|ZP_12567776.1| tRNA modification GTPase TrmE [Streptococcus mitis SK569]
gi|418968124|ref|ZP_13519751.1| tRNA modification GTPase TrmE [Streptococcus mitis SK616]
gi|342836117|gb|EGU70340.1| tRNA modification GTPase TrmE [Streptococcus mitis SK569]
gi|383341250|gb|EID19514.1| tRNA modification GTPase TrmE [Streptococcus mitis SK616]
Length = 457
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 166/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +IVDP + V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFTIAQKIFKGKDLSQVASHTLNYGHIVDPQTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTNLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|326390368|ref|ZP_08211927.1| tRNA modification GTPase TrmE [Thermoanaerobacter ethanolicus JW
200]
gi|325993645|gb|EGD52078.1| tRNA modification GTPase TrmE [Thermoanaerobacter ethanolicus JW
200]
Length = 462
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 121/339 (35%), Positives = 179/339 (52%), Gaps = 74/339 (21%)
Query: 95 FPRHGKCGVSVIRVSGPDTLNAL-KSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEG 151
FP G+ G+ ++R+SG D L + K Y + + K + +L +IVDP +E V DE
Sbjct: 14 FP--GEAGIGIVRISGDDALEIISKIFKPYKPKNIKKVKSHTLHYGHIVDPETEEVYDEV 71
Query: 152 LCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLD 211
L KPN++T ED E HG I V + IL + K G R AEPGEF+KRAF N ++D
Sbjct: 72 LVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLK-QGARLAEPGEFTKRAFLNGRID 130
Query: 212 LTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEII 271
L+Q EA+ D+I A+T L + Y++
Sbjct: 131 LSQAEAVIDIITAKTMLANK-------------YAQK----------------------- 154
Query: 272 EDNILNTVRSQVVQLHGSI-EKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIE 330
QL G I +K EL +K + L + A IDF ED++ E
Sbjct: 155 -------------QLSGHIGQKMKELKDKI----------MGLLVHLLALIDFPEDDVEE 191
Query: 331 ---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQ 387
+L T + ++V+ I+K I S++ G+ IR G+K+ I+G+PNVGKSSL+N L +
Sbjct: 192 LERKEMLETAK-EIVE---DIDKLIA-SSESGMIIREGLKTAIIGKPNVGKSSLLNALLK 246
Query: 388 KQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426
+ +IVT IPGTTRD+IE+++++ G P+ L+DTAG+R T
Sbjct: 247 ENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDT 285
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 137/292 (46%), Gaps = 73/292 (25%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNAL-KSMACYPDQKVPKPRYASLR--NIVDPVSK 84
+TI A+S+ G+ G+ ++R+SG D L + K Y + + K + +L +IVDP ++
Sbjct: 6 DTIAAISTFPGEAGIGIVRISGDDALEIISKIFKPYKPKNIKKVKSHTLHYGHIVDPETE 65
Query: 85 VVLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVS 144
V DE L VS+++ KP + +IV
Sbjct: 66 EVYDEVL-----------VSIMK----------------------KPNTYTREDIV---- 88
Query: 145 EVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRA 204
E HG I V + IL + K G R AEPGEF+KRA
Sbjct: 89 ------------------------EINCHGGIVVTSKILELVLK-QGARLAEPGEFTKRA 123
Query: 205 FFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYID 264
F N ++DL+Q EA+ D+I A+T L + A Q+ G++ Q E + I+ L + A ID
Sbjct: 124 FLNGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIGQKMKELKDKIMGLLVHLLALID 183
Query: 265 FSEDEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
F ED++ E +L T + ++V+ I+K I S++ G+ IR G+K+ I
Sbjct: 184 FPEDDVEELERKEMLETAK-EIVE---DIDKLIA-SSESGMIIREGLKTAII 230
>gi|320546578|ref|ZP_08040893.1| tRNA modification GTPase TrmE [Streptococcus equinus ATCC 9812]
gi|320448963|gb|EFW89691.1| tRNA modification GTPase TrmE [Streptococcus equinus ATCC 9812]
Length = 457
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 113/339 (33%), Positives = 174/339 (51%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D L+ K Y + +SK ++ +IVDP ++ +LDE +
Sbjct: 17 GEGAIGIVRLSGTDALDIAKK--VYRGKDLSKVDSHTINYGHIVDPDNDEILDEVMVSVM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG +AV N IL + + G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 LSPKTFTREDVIEINTHGGVAVTNEILQLVLR-HGARLAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L +L ++ RQ IL
Sbjct: 134 AVMDIIRAKTDKAMNIAVKQLDGSLSKLINDTRQ-----------------------EIL 170
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
NT LA VE ID+ E + +E+
Sbjct: 171 NT-----------------------------------LAQVEVNIDYPEYDDVEEMTTAL 195
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+ + + +E + + + G +R G+ + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 196 IHEKTQEFQSLLENLLRTARR-GKILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 255 EGTTRDVIEEYVNIKGVPLKLVDTAGIR-ETDDVVEKIG 292
>gi|307706532|ref|ZP_07643339.1| tRNA modification GTPase TrmE [Streptococcus mitis SK321]
gi|307617987|gb|EFN97147.1| tRNA modification GTPase TrmE [Streptococcus mitis SK321]
Length = 457
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 168/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG ++ + + D + +I+DP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTESFAIAQKIFKGKDLNKVASHTLNYGHIIDPLTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L +L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSELINNTRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTIEFEQLLTNLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|270292694|ref|ZP_06198905.1| thiophene and furan oxidation protein ThdF [Streptococcus sp. M143]
gi|270278673|gb|EFA24519.1| thiophene and furan oxidation protein ThdF [Streptococcus sp. M143]
Length = 475
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 116/339 (34%), Positives = 171/339 (50%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + +SK +L +IVDP + V+DE +
Sbjct: 35 GEGAIGIVRLSGTDSFAIAQKI--FKGKDLSKVASHTLNYGHIVDPQTGKVMDEVMVGAM 92
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 93 KSPKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAE 151
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL
Sbjct: 152 AVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EIL 188
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
NT LA VE ID+ E + +E+
Sbjct: 189 NT-----------------------------------LAQVEVNIDYPEYDDVEEATTAV 213
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
VR + ++ + + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 214 VREKTMEFEQLLTNLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDI 272
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 273 AGTTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 310
>gi|205422290|sp|A9MJT6.2|MNME_SALAR RecName: Full=tRNA modification GTPase MnmE
Length = 454
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 114/334 (34%), Positives = 164/334 (49%), Gaps = 69/334 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG LNA K +A K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LNA-KKVAQTVLGKLPKPRYADYLPFKD-ADGATLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PG+R A PGEFS+RAF N+KLDL Q E
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIARPGEFSERAFLNDKLDLAQAE-- 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
++ ID S ++
Sbjct: 128 ---------------------------------------AIADLIDASSEQ--------A 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS + L G+ + + +R VEA IDF ++EI + L+ +
Sbjct: 141 ARSALNSLQGAFSARVNHLVEALTHLR---------IYVEAAIDFPDEEI---DFLSDGK 188
Query: 339 SQVVQLHGSIEK--HIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+ QL+G I + + G +R G+K VI G PN GKSSL+N L ++ +IVT I
Sbjct: 189 IEA-QLNGVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDI 247
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 248 AGTTRDVLREHIHIDGMPLHVIDTAGLRDASDEV 281
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG LNA K +A K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LNA-KKVAQTVLGKLPKPRYADYLPFKD-ADGATL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIARPGEFSERAFLN 118
>gi|94994338|ref|YP_602436.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS10750]
gi|166234825|sp|Q1J6U1.1|MNME_STRPF RecName: Full=tRNA modification GTPase MnmE
gi|94547846|gb|ABF37892.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Streptococcus pyogenes MGAS10750]
Length = 458
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 171/337 (50%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D L +S+ + + + +I+DP + ++DE +
Sbjct: 18 GEGAIGIVRLSGTDALAIAQSVFKGKNLEQVASHTINYGHIIDPNTGTIVDEVMVSVMLA 77
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT E+ E HG IAV N IL L + G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 78 PKTFTRENVVEINTHGGIAVTNEILQLLIR-QGARMAEPGEFTKRAFLNGRVDLTQAEAV 136
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L QL ++ RQ ILNT
Sbjct: 137 MDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQ-----------------------EILNT 173
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ +R
Sbjct: 174 -----------------------------------LAQVEVNIDYPEYDDVEEMTTALLR 198
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + +E + + K G +R G+ + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 199 EKTQEFQSLLENLLR-TAKRGKILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 257
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 258 TTRDVIEEYVNIKGVPLKLVDTAGIR-ETDDLVEQIG 293
>gi|171779779|ref|ZP_02920735.1| hypothetical protein STRINF_01616 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281881|gb|EDT47315.1| tRNA modification GTPase TrmE [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 457
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 114/339 (33%), Positives = 174/339 (51%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D L + Y + +SK ++ +IVDP ++ +LDE +
Sbjct: 17 GEGAIGIVRLSGTDALAI--AQKVYRGKDLSKVASHTINYGHIVDPDNDEILDEVMVSVM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT E+ E HG +AV N IL L + G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 LAPKTFTRENVIEINTHGGVAVTNEILQLLLR-QGARLAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L +L ++ RQ IL
Sbjct: 134 AIMDIIRAKTDKAMNIAVKQLDGSLSKLINDTRQ-----------------------EIL 170
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
NT LA VE ID+ E + +E+
Sbjct: 171 NT-----------------------------------LAQVEVNIDYPEYDDVEEMTTAL 195
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+R + + +E + + K G +R G+ + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 196 IREKTQEFQTLLENLLA-TAKRGKILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 255 EGTTRDVIEEYVNIKGVPLKLVDTAGIR-ETDDVVEKIG 292
>gi|190171178|gb|ACE63659.1| ThdF [Citrobacter koseri]
Length = 439
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 114/334 (34%), Positives = 163/334 (48%), Gaps = 69/334 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q E
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAE-- 119
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
++ ID S ++
Sbjct: 120 ---------------------------------------AIADLIDASSEQ--------A 132
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS + L G+ + + +R VEA IDF ++EI + L+ +
Sbjct: 133 ARSALNSLQGAFSARVNHLVEALTHLR---------IYVEAAIDFPDEEI---DFLSDGK 180
Query: 339 SQVVQLHGSIEK--HIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+ QL+G I + + G +R G+K VI G PN GKSSL+N L ++ +IVT I
Sbjct: 181 IEA-QLNGVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDI 239
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 240 AGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 273
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++R+SG L A + +A K+PKPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 110
>gi|417848429|ref|ZP_12494374.1| tRNA modification GTPase TrmE [Streptococcus mitis SK1073]
gi|339452643|gb|EGP65266.1| tRNA modification GTPase TrmE [Streptococcus mitis SK1073]
Length = 457
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 167/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG ++ + + D + +IVDP++ V+DE +
Sbjct: 17 GEGAIGIVRLSGTESFAIAQKIFKGKDLNKVASHTLNYGHIVDPLTSKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTNLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|49474829|ref|YP_032871.1| tRNA modification GTPase TrmE [Bartonella quintana str. Toulouse]
gi|81827572|sp|Q6FYB8.1|MNME_BARQU RecName: Full=tRNA modification GTPase MnmE
gi|49240333|emb|CAF26815.1| Thiophene and furan oxidizer [Bartonella quintana str. Toulouse]
Length = 436
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/329 (34%), Positives = 160/329 (48%), Gaps = 64/329 (19%)
Query: 102 GVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNS 161
GV+VIR+SGP +N +K++ + + K R N+ LD L ++FP P+S
Sbjct: 15 GVAVIRLSGPHVINIVKALCGH----LPKARLMHYGNLT-ARDGSFLDSALTVFFPAPHS 69
Query: 162 FTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDL 221
FTGEDC EF +HGS AV+N L L+ G R AE GEFS+RAF KLDL Q E+L DL
Sbjct: 70 FTGEDCAEFHLHGSKAVVNRFLDELSTFDGCRSAEAGEFSRRAFMEGKLDLIQAESLADL 129
Query: 222 IQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRS 281
I+AETE QR+ A+ G L LY +WR ++++ A +EA +DFS++ + D I + V
Sbjct: 130 IEAETESQRRLAVMGTSGRLTTLYRDWRNRLIKARAFIEAELDFSDEADVSDLISDKVWE 189
Query: 282 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQV 341
V +L SI HI + + +R G+K VI A N+ +S +
Sbjct: 190 DVEELCISIRDHIAQGERANI-LRDGLKIVIAGAP------------------NSGKSSI 230
Query: 342 VQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTR 401
+ R KSV + G + R
Sbjct: 231 MN-------------------RLAGKSVAIVMEEAGTT---------------------R 250
Query: 402 DVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
D +E L +GG PV L DTAGLR T + I
Sbjct: 251 DALEIRLVLGGLPVFLTDTAGLRETENKI 279
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFA+SSG GV+VIR+SGP +N +K++ + +PK R N+ L
Sbjct: 2 DTIFAVSSGLLPSGVAVIRLSGPHVINIVKALCGH----LPKARLMHYGNLT-ARDGSFL 56
Query: 88 DEGLCLWFP 96
D L ++FP
Sbjct: 57 DSALTVFFP 65
>gi|342876880|gb|EGU78434.1| hypothetical protein FOXB_11048 [Fusarium oxysporum Fo5176]
Length = 644
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/235 (39%), Positives = 144/235 (61%), Gaps = 14/235 (5%)
Query: 86 VLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPV-- 143
++D+ + G+ G++VIR+SGP L +++ P + + KPRYA +R++ DP
Sbjct: 123 IIDDTIYALSTAQGRAGIAVIRISGPSCLEIYEALC--PSKPLPKPRYAKVRSLYDPQHA 180
Query: 144 --SEVVLD-EGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG---LRPAEP 197
++VLD E L L+FP P + TG+D E VHG A + A+L A+ K +R AEP
Sbjct: 181 NNEQIVLDPEALVLYFPSPKTVTGDDVLELHVHGGSATVKAVLAAIPKCSATHRIRYAEP 240
Query: 198 GEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLA 257
GEF+KRAFFN++LDL Q E+L D + AETE QR+ A+ G L + Y WR+ +L +
Sbjct: 241 GEFTKRAFFNDRLDLAQIESLSDTLAAETEQQRRAAVRGNSGVLGRQYETWREQLLLARG 300
Query: 258 SVEAYIDFSEDEIIEDN---ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK 309
+EA IDFSED+ +++ +L V +QV ++ SIE H + S + + +R+GI+
Sbjct: 301 EIEALIDFSEDQHFDESQAELLQNVTAQVARMLHSIELHEQGSQRSEL-LRNGIR 354
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 14/164 (8%)
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGI----------KSVICLASVEAYIDFSEDEIIE 330
+Q+ L ++ E + VR SG+ + ++ +EA IDFSED+ +
Sbjct: 256 AQIESLSDTLAAETEQQRRAAVRGNSGVLGRQYETWREQLLLARGEIEALIDFSEDQHFD 315
Query: 331 DN---ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQ 387
++ +L V +QV ++ SIE H + S + + +R+GI+ ++G PNVGKSSLMN +
Sbjct: 316 ESQAELLQNVTAQVARMLHSIELHEQGSQRSEL-LRNGIRIALLGPPNVGKSSLMNLIVG 374
Query: 388 KQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDII 431
++ SIV+ GTTRD++E LDI GY DTAG R+ S +I
Sbjct: 375 REASIVSGEAGTTRDIVEASLDIRGYLCSFADTAGFRSKGSQVI 418
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 51/76 (67%), Gaps = 7/76 (9%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPV--- 82
I +TI+ALS+ G+ G++VIR+SGP L +++ P + +PKPRYA +R++ DP
Sbjct: 124 IDDTIYALSTAQGRAGIAVIRISGPSCLEIYEALC--PSKPLPKPRYAKVRSLYDPQHAN 181
Query: 83 -SKVVLD-EGLCLWFP 96
++VLD E L L+FP
Sbjct: 182 NEQIVLDPEALVLYFP 197
>gi|319779149|ref|YP_004130062.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Taylorella
equigenitalis MCE9]
gi|317109173|gb|ADU91919.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Taylorella
equigenitalis MCE9]
Length = 443
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 117/339 (34%), Positives = 173/339 (51%), Gaps = 70/339 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G+ V+RVSG + +++ D KPR A+ + D +D GL L+FP
Sbjct: 14 GRGGIGVVRVSGQELAGFARALTNGLD---PKPRIATYTDFFDD-DGAAIDNGLLLYFPA 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG ++N +L +L G R AEPGEF+KRAF NNK+DLTQ E++
Sbjct: 70 PHSFTGEDVLELQGHGGPVILNMVLKRCIEL-GARLAEPGEFTKRAFLNNKIDLTQAESV 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL +LK ++S+
Sbjct: 129 ADLIDATSEKAARMALR----SLKGVFSD------------------------------- 153
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
++H + K I L VEA +DF E+E+ + L
Sbjct: 154 ------RIHELVSKLINLR-----------------MLVEATLDFPEEEL---DFLEAAD 187
Query: 339 S--QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+ Q+ ++ +E I +N+ G +R G+K ++G PNVGKSSL+N L ++++IVT I
Sbjct: 188 ALGQLNEIRKLLEGIISQANQ-GTIMREGLKVALIGMPNVGKSSLLNALSGEEVAIVTDI 246
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV++ + I G P+ +DTAGLR T D++E G
Sbjct: 247 AGTTRDVVKNFIHIDGVPIHFMDTAGLR-ETEDLVEQIG 284
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
++TI A+++ G+ G+ V+RVSG + +++ D PKPR A+ + D
Sbjct: 3 EDTIAAIATAPGRGGIGVVRVSGQELAGFARALTNGLD---PKPRIATYTDFFDD-DGAA 58
Query: 87 LDEGLCLWFPR-HGKCGVSVIRV---SGPDTLNALKSMACYPDQKVSKP----RYASLRN 138
+D GL L+FP H G V+ + GP LN + ++++P + A L N
Sbjct: 59 IDNGLLLYFPAPHSFTGEDVLELQGHGGPVILNMVLKRCIELGARLAEPGEFTKRAFLNN 118
Query: 139 IVD 141
+D
Sbjct: 119 KID 121
>gi|322391875|ref|ZP_08065340.1| thiophene and furan oxidation protein ThdF [Streptococcus peroris
ATCC 700780]
gi|321145355|gb|EFX40751.1| thiophene and furan oxidation protein ThdF [Streptococcus peroris
ATCC 700780]
Length = 457
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/339 (33%), Positives = 172/339 (50%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D+ + + + + +SK +L +I+DP + V+DE +
Sbjct: 17 GEGAIGIVRLSGTDSFAIAQKI--FKGKDLSKVASHTLNYGHIIDPQTGKVMDEVMVGAM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 KSPKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L L + RQ IL
Sbjct: 134 AVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EIL 170
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
NT LA VE ID+ E + +E+
Sbjct: 171 NT-----------------------------------LAQVEVNIDYPEYDDVEEATTAV 195
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
VR + ++ + ++ + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 196 VREKTLEFEQLLTNLLKTARR-GKILREGISTAIIGRPNVGKSSLLNSLLREDKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 255 AGTTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|419782757|ref|ZP_14308555.1| tRNA modification GTPase TrmE [Streptococcus oralis SK610]
gi|383182970|gb|EIC75518.1| tRNA modification GTPase TrmE [Streptococcus oralis SK610]
Length = 457
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 166/337 (49%), Gaps = 61/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ + ++R+SG D+ + + D + +IVDP + V+DE +
Sbjct: 17 GEGAIGIVRLSGADSFAIAQKIFKGKDLSQVASHTLNYGHIVDPQTGKVMDEVMVGAMKS 76
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT ED E HG IAV N IL L G R AEPGEF+KRAF N ++DLTQ EA+
Sbjct: 77 PKTFTREDIIEINTHGGIAVTNEIL-QLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAV 135
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I+A+T+ A+ Q+ G+L L + RQ ILNT
Sbjct: 136 MDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQ-----------------------EILNT 172
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
LA VE ID+ E + +E+ VR
Sbjct: 173 -----------------------------------LAQVEVNIDYPEYDDVEEATTAVVR 197
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ + + + + G +R GI + I+G PNVGKSSL+N L ++ +IVT I G
Sbjct: 198 EKTMEFEQLLTNLLRTARR-GKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAG 256
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE++++I G P+ L+DTAG+R T DI+E G
Sbjct: 257 TTRDVIEEYVNINGVPLKLIDTAGIR-ETDDIVEQIG 292
>gi|190171176|gb|ACE63658.1| ThdF [Citrobacter koseri]
Length = 439
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/334 (34%), Positives = 163/334 (48%), Gaps = 69/334 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q E
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAE-- 119
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
++ ID S ++
Sbjct: 120 ---------------------------------------AIADLIDASSEQ--------A 132
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS + L G+ + + +R VEA IDF ++EI + L+ +
Sbjct: 133 ARSALNSLQGAFSARVNHLVEALTHLR---------IYVEAAIDFPDEEI---DFLSDGK 180
Query: 339 SQVVQLHGSIEK--HIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+ QL+G I + + G +R G+K VI G PN GKSSL+N L ++ +IVT I
Sbjct: 181 IEA-QLNGVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDI 239
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 240 AGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEV 273
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR 97
G+ GV ++R+SG L A + +A K+PKPRYA D LD+G+ LWFP
Sbjct: 7 GRGGVGILRISG---LKA-REVAEAVLGKLPKPRYADYLPFKD-ADGTALDQGIALWFPG 61
Query: 98 -HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
+ G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 62 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 110
>gi|340027234|ref|ZP_08663297.1| tRNA modification GTPase TrmE [Paracoccus sp. TRP]
Length = 419
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 113/343 (32%), Positives = 176/343 (51%), Gaps = 80/343 (23%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GVSV+R+SGP AL+S+A ++ PR A LR + D E ++D L LWF +
Sbjct: 12 GRGGVSVVRLSGPKARAALESLAG----PIAAPRIAVLRALRD--GEDLIDRALVLWFEE 65
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
+SFTGE+ E +HG+ ++N + AL GLR AE GEF++RAF N ++DL + E L
Sbjct: 66 GHSFTGEEVAELHIHGAPIIVNRLTQALLA-RGLRRAEAGEFTRRAFLNGRMDLAEAEGL 124
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL+ A E + Q+ L ++ + E + DE+
Sbjct: 125 ADLLAA--ETEAQRKL--------------------AMRATEGELGQKADEL-------- 154
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIED------N 332
+ G+ IR+G A VEA IDF+++++ ED +
Sbjct: 155 --------------------RSGL-IRAG-------ALVEASIDFADEDVPEDVPEEVFD 186
Query: 333 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
+++ VR + Q+ + R+R G + I+G PN GKS+L+N + Q+++++
Sbjct: 187 LIDKVRLDIQQMLATY--------PATERLRQGYEVAIIGPPNAGKSTLLNRIGQREVAL 238
Query: 393 VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
V+ I GTTRD++E D+ G PV LDTAGLR +SD +E G
Sbjct: 239 VSDIAGTTRDILELRTDLRGLPVTFLDTAGLR-ESSDPVEAMG 280
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFA ++ G+ GVSV+R+SGP AL+S+A + PR A LR + D + ++
Sbjct: 2 DTIFAEATPPGRGGVSVVRLSGPKARAALESLAG----PIAAPRIAVLRALRD--GEDLI 55
Query: 88 DEGLCLWF 95
D L LWF
Sbjct: 56 DRALVLWF 63
>gi|148245045|ref|YP_001219739.1| tRNA modification GTPase TrmE [Candidatus Vesicomyosocius okutanii
HA]
gi|166234830|sp|A5CVJ3.1|MNME_VESOH RecName: Full=tRNA modification GTPase MnmE
gi|146326872|dbj|BAF62015.1| tRNA modification GTPase [Candidatus Vesicomyosocius okutanii HA]
Length = 447
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 117/346 (33%), Positives = 173/346 (50%), Gaps = 69/346 (19%)
Query: 91 LCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDE 150
+C GK G+ ++RVSGP K M + + KPRYA D S + D+
Sbjct: 8 ICALASSVGKGGIGIVRVSGPLCKVIAKKMLGF----IPKPRYAYYGLFFDQESTEI-DK 62
Query: 151 GLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKL 210
G+ L+FPKP SFTGED EFQ HG + + +L + + G + AE GEFSKR+F N K+
Sbjct: 63 GIALFFPKPYSFTGEDVLEFQGHGGMIGMRLLLESAISM-GAKLAESGEFSKRSFLNGKM 121
Query: 211 DLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEI 270
DL Q EA+ D+I A ++ + A + G DFS
Sbjct: 122 DLVQAEAISDMINANSKRASKSAFRSLSG------------------------DFS---- 153
Query: 271 IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIE 330
N +N + +++L VEA IDFS++EI
Sbjct: 154 ---NQINGLTKSIIELR---------------------------VFVEATIDFSDEEI-- 181
Query: 331 DNI-LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389
D + + V+ ++ + +IE ++ S G+ +R G+ I G+PN GKSSL+N L Q+
Sbjct: 182 DFLQFDQVKCKIKDIKQTIETILK-SATQGIILREGLNVAIAGKPNAGKSSLLNALTQES 240
Query: 390 ISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
+IVT I GTTRDV+++ + + G P+ ++DTAGLR + D IE EG
Sbjct: 241 SAIVTDIAGTTRDVLKETIHVNGVPLSIIDTAGLR-NSHDKIEKEG 285
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV 86
K TI AL+S GK G+ ++RVSGP K M + +PKPRYA D S +
Sbjct: 5 KTTICALASSVGKGGIGIVRVSGPLCKVIAKKMLGF----IPKPRYAYYGLFFDQESTEI 60
Query: 87 LDEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP+ + G V+ G
Sbjct: 61 -DKGIALFFPKPYSFTGEDVLEFQG 84
>gi|379705057|ref|YP_005203516.1| tRNA modification GTPaseTrmE:Small GTP-bindingprotein domain
protein [Streptococcus infantarius subsp. infantarius
CJ18]
gi|374681756|gb|AEZ62045.1| tRNA modification GTPaseTrmE:Small GTP-bindingprotein domain
protein [Streptococcus infantarius subsp. infantarius
CJ18]
Length = 457
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/339 (33%), Positives = 174/339 (51%), Gaps = 65/339 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEGLCLWF 156
G+ + ++R+SG D L + Y + +SK ++ +IVDP ++ +LDE +
Sbjct: 17 GEGAIGIVRLSGTDALAI--AQKVYRGKDLSKVASHTINYGHIVDPDNDEILDEVMVSVM 74
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P +FT E+ E HG +AV N IL L + G R AEPGEF+KRAF N ++DLTQ E
Sbjct: 75 LAPKTFTRENVIEINTHGGVAVTNEILQLLLR-QGARLAEPGEFTKRAFLNGRVDLTQAE 133
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ D+I+A+T+ A+ Q+ G+L +L ++ RQ IL
Sbjct: 134 AVMDIIRAKTDKAMNIAVKQLDGSLSKLINDTRQ-----------------------EIL 170
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
NT LA VE ID+ E + +E+
Sbjct: 171 NT-----------------------------------LAQVEVNIDYPEYDDVEEMTTAL 195
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+R + + +E + + K G +R G+ + I+G PNVGKSSL+N L ++ +IVT I
Sbjct: 196 IREKTQEFQTLLENLLA-TAKRGKILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDI 254
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDVIE++++I G P+ L+DTAG+R T D++E G
Sbjct: 255 EGTTRDVIEEYVNIKGVPLKLVDTAGIR-ETDDVVEKIG 292
>gi|418297997|ref|ZP_12909837.1| tRNA modification GTPase TrmE [Agrobacterium tumefaciens
CCNWGS0286]
gi|355537367|gb|EHH06627.1| tRNA modification GTPase TrmE [Agrobacterium tumefaciens
CCNWGS0286]
Length = 442
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/209 (43%), Positives = 125/209 (59%), Gaps = 5/209 (2%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GV+V+R+SG +ALK + + + PR +L +I + +EV+ D+ L + FP PN
Sbjct: 18 AGVAVLRISGSGAFDALKMLTG---RDLPSPRKTTLCSIRNRNNEVI-DQALVIAFPAPN 73
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGEDC E HGS AVI +I L L G RPA+ GEFS+RAF N K+DL + E L D
Sbjct: 74 SFTGEDCVEIHSHGSRAVIASIFTELENLSGFRPADAGEFSRRAFENGKMDLLEVEGLAD 133
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
L+QAETE+QR+ A+ Q G L LY W + + A +EA +DF+++E + D++ V
Sbjct: 134 LLQAETEMQRRLAVEQSTGKLSALYDGWASRLTRARALIEAELDFADEEDVPDSVAAQVW 193
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIK 309
V QL G I H++ G IR G K
Sbjct: 194 DAVAQLRGEIRDHLQ-GGGSGEIIRDGFK 221
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 77/121 (63%), Gaps = 2/121 (1%)
Query: 315 ASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEP 374
A +EA +DF+++E + D++ V V QL G I H++ G IR G K +VGEP
Sbjct: 170 ALIEAELDFADEEDVPDSVAAQVWDAVAQLRGEIRDHLQ-GGGSGEIIRDGFKVALVGEP 228
Query: 375 NVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETE 434
N GKS+L+N L + ++IVT I GTTRDV+ +++ GY V + DTAG+R T D++E E
Sbjct: 229 NAGKSTLLNALSGRDVAIVTDIAGTTRDVLSVDINLEGYLVRIFDTAGIR-ETQDVVELE 287
Query: 435 G 435
G
Sbjct: 288 G 288
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 25 AIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSK 84
A +TI+ALSSG GV+V+R+SG +ALK + + +P PR +L +I + ++
Sbjct: 3 ASADTIYALSSGALPAGVAVLRISGSGAFDALKMLTG---RDLPSPRKTTLCSIRNRNNE 59
Query: 85 VVLDEGLCLWFP 96
V+ D+ L + FP
Sbjct: 60 VI-DQALVIAFP 70
>gi|304413431|ref|ZP_07394904.1| putative GTPase [Candidatus Regiella insecticola LSR1]
gi|304284274|gb|EFL92667.1| putative GTPase [Candidatus Regiella insecticola LSR1]
Length = 457
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 121/342 (35%), Positives = 172/342 (50%), Gaps = 73/342 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKS-MACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ GV ++R+SG AL S +A K+ PRYA D S +LD+G+ L+F
Sbjct: 18 GRGGVGILRISG-----ALASAVAQAILNKLPPPRYAHYLKFYDEDSNSILDQGIALYFQ 72
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLP--GLRPAEPGEFSKRAFFNNKLDLTQT 215
P+SFTGED E Q HG V++ +L + LP GLR A PGEF +RAF NNK+DLTQ
Sbjct: 73 GPHSFTGEDILELQGHGGPIVLDLLLKRILALPLPGLRIARPGEFLERAFLNNKIDLTQA 132
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
EA+ ++I N
Sbjct: 133 EAVA-------------------------------------------------DLINANS 143
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILN 335
RS V L G I+ ++ + +R A VEA +DFSE+EI N L+
Sbjct: 144 EQAARSAVNSLQGVFSDRIKAFSQNLIDLR---------AYVEAAMDFSEEEI---NFLS 191
Query: 336 --TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIV 393
+ Q+ + ++K ++ + G +R G+K VI G PN GKSSL+N L K+ +IV
Sbjct: 192 DGKIEGQLNNIINELKK-VQAAAHQGSLLREGMKVVIAGRPNAGKSSLLNALAGKESAIV 250
Query: 394 TSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
T++ GTTRDV+ +++ I G P+ ++DTAGLR TS+IIE G
Sbjct: 251 TAVAGTTRDVLREYIHIDGMPLHIIDTAGLR-ETSEIIEKIG 291
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 18/135 (13%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKS-MACYPDQKVPKPRYASLRNIVDPVSKVV 86
+TI A ++ G+ GV ++R+SG AL S +A K+P PRYA D S +
Sbjct: 8 DTIVAQATPPGRGGVGILRISG-----ALASAVAQAILNKLPPPRYAHYLKFYDEDSNSI 62
Query: 87 LDEGLCLWFPR-HGKCGVSVIRV---SGPDTLNAL--KSMAC-YPDQKVSKP----RYAS 135
LD+G+ L+F H G ++ + GP L+ L + +A P ++++P A
Sbjct: 63 LDQGIALYFQGPHSFTGEDILELQGHGGPIVLDLLLKRILALPLPGLRIARPGEFLERAF 122
Query: 136 LRNIVDPV-SEVVLD 149
L N +D +E V D
Sbjct: 123 LNNKIDLTQAEAVAD 137
>gi|241206940|ref|YP_002978036.1| tRNA modification GTPase TrmE [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240860830|gb|ACS58497.1| tRNA modification GTPase TrmE [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 437
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 132/215 (61%), Gaps = 6/215 (2%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
GVSV+R+SGP T + L S+A VS R+AS R I ++ + D GL L+FP PN
Sbjct: 16 SGVSVVRISGPLTRDILVSLAG----SVSAARHASHRTIRSRNNQPI-DSGLVLFFPAPN 70
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
SFTGED E Q+HGS AV+ A+ AL +PG+R A GEFS+RAF N KLDL + E L D
Sbjct: 71 SFTGEDVAELQIHGSKAVLAALFHALGDIPGVRMAVEGEFSRRAFENGKLDLVEVEGLAD 130
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI AETE+QR+ A+ G L ++Y W + + + A +EA +DF +++ + ++ + V
Sbjct: 131 LIGAETEMQRRLAVEHSAGGLSRIYDSWAERLTRARALIEAELDFPDEDDVPGSVSDMVW 190
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA 315
+ + +L IE H+ ++ G IR G K VI A
Sbjct: 191 ADMAKLRSDIENHLATAS-AGEIIRDGFKVVIAGA 224
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 77/121 (63%), Gaps = 2/121 (1%)
Query: 315 ASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEP 374
A +EA +DF +++ + ++ + V + + +L IE H+ ++ G IR G K VI G P
Sbjct: 167 ALIEAELDFPDEDDVPGSVSDMVWADMAKLRSDIENHLATAS-AGEIIRDGFKVVIAGAP 225
Query: 375 NVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETE 434
N GKSSL+N L ++ ++IVT I GTTRDV++ LDI GY + L DTAGLR D +E E
Sbjct: 226 NAGKSSLLNTLARRDVAIVTEIAGTTRDVLQVDLDIDGYLIKLYDTAGLR-EADDRVEME 284
Query: 435 G 435
G
Sbjct: 285 G 285
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ +TI+ALSSG GVSV+R+SGP T + L S+A V R+AS R I ++
Sbjct: 2 LNDTIYALSSGALPSGVSVVRISGPLTRDILVSLAG----SVSAARHASHRTIRSRNNQP 57
Query: 86 VLDEGLCLWFP 96
+ D GL L+FP
Sbjct: 58 I-DSGLVLFFP 67
>gi|392940017|ref|ZP_10305661.1| tRNA modification GTPase TrmE [Thermoanaerobacter siderophilus SR4]
gi|392291767|gb|EIW00211.1| tRNA modification GTPase TrmE [Thermoanaerobacter siderophilus SR4]
Length = 462
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 121/339 (35%), Positives = 179/339 (52%), Gaps = 74/339 (21%)
Query: 95 FPRHGKCGVSVIRVSGPDTLNAL-KSMACYPDQKVSKPRYASLR--NIVDPVSEVVLDEG 151
FP G+ G+ ++R+SG D L + K Y + + K + +L +IVDP +E V DE
Sbjct: 14 FP--GEAGIGIVRISGDDALEIISKIFKPYKPKNIKKVKSHTLHYGHIVDPETEEVYDEV 71
Query: 152 LCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLD 211
L KPN++T ED E HG I V + IL + K G R AEPGEF+KRAF N ++D
Sbjct: 72 LVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLK-QGARLAEPGEFTKRAFLNGRID 130
Query: 212 LTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEII 271
L+Q EA+ D+I A+T L + Y++
Sbjct: 131 LSQAEAVIDIITAKTMLANK-------------YAQK----------------------- 154
Query: 272 EDNILNTVRSQVVQLHGSI-EKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIE 330
QL G I +K EL +K + L + A IDF ED++ E
Sbjct: 155 -------------QLSGHIGQKMKELKDKI----------MGLLVHLLALIDFPEDDVEE 191
Query: 331 ---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQ 387
+L T + ++V+ I+K I +S++ G IR G+K+ I+G+PNVGKSSL+N L +
Sbjct: 192 LERKEMLETAK-EIVE---DIDKLI-VSSESGRIIREGLKTAIIGKPNVGKSSLLNALLK 246
Query: 388 KQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426
+ +IVT IPGTTRD+IE+++++ G P+ L+DTAG+R T
Sbjct: 247 ENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDT 285
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 137/292 (46%), Gaps = 73/292 (25%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNAL-KSMACYPDQKVPKPRYASLR--NIVDPVSK 84
+TI A+S+ G+ G+ ++R+SG D L + K Y + + K + +L +IVDP ++
Sbjct: 6 DTIAAISTFPGEAGIGIVRISGDDALEIISKIFKPYKPKNIKKVKSHTLHYGHIVDPETE 65
Query: 85 VVLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVS 144
V DE L VS+++ KP + +IV
Sbjct: 66 EVYDEVL-----------VSIMK----------------------KPNTYTREDIV---- 88
Query: 145 EVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRA 204
E HG I V + IL + K G R AEPGEF+KRA
Sbjct: 89 ------------------------EINCHGGIVVTSKILELVLK-QGARLAEPGEFTKRA 123
Query: 205 FFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYID 264
F N ++DL+Q EA+ D+I A+T L + A Q+ G++ Q E + I+ L + A ID
Sbjct: 124 FLNGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIGQKMKELKDKIMGLLVHLLALID 183
Query: 265 FSEDEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
F ED++ E +L T + ++V+ I+K I +S++ G IR G+K+ I
Sbjct: 184 FPEDDVEELERKEMLETAK-EIVE---DIDKLI-VSSESGRIIREGLKTAII 230
>gi|383815557|ref|ZP_09970968.1| tRNA modification GTPase TrmE [Serratia sp. M24T3]
gi|383295589|gb|EIC83912.1| tRNA modification GTPase TrmE [Serratia sp. M24T3]
Length = 454
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/351 (32%), Positives = 173/351 (49%), Gaps = 75/351 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG ++ +A K+ KPRYA D LD+G+ LWFP
Sbjct: 15 GRGGVGIVRISG----HSASLIAQEILGKLPKPRYADYLPFRD-ADGSTLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ ++ + +PG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLIKRILAIPGVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
++I+ + +
Sbjct: 130 A-------------------------------------------------DLIDASSVQA 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA-SVEAYIDFSEDEI--IEDNILN 335
RS V L G+ RI ++++ L VEA IDF ++EI + D +
Sbjct: 141 ARSAVNSLQGAFS----------TRIHHLVEALTNLRIYVEAAIDFPDEEIDFLSDGKIE 190
Query: 336 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTS 395
+QV+ G ++ + + G +R G+K VI G PN GKSSL+N L ++ +IVT
Sbjct: 191 AKLNQVI---GDLDA-VRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTD 246
Query: 396 IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI----IETEGNLLEKNN 442
I GTTRDV+ +H+ I G P+ ++DTAGLR + ++ IE N +E+ +
Sbjct: 247 IAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWNEIEQAD 297
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG ++ +A K+PKPRYA D L
Sbjct: 5 DTIVAQATPPGRGGVGIVRISG----HSASLIAQEILGKLPKPRYADYLPFRD-ADGSTL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLNAL-KSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ L K + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLIKRILAIPGVRIARPGEFSERAFLN 118
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,481,154,332
Number of Sequences: 23463169
Number of extensions: 254688547
Number of successful extensions: 861996
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 12233
Number of HSP's successfully gapped in prelim test: 1821
Number of HSP's that attempted gapping in prelim test: 829968
Number of HSP's gapped (non-prelim): 25849
length of query: 445
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 299
effective length of database: 8,933,572,693
effective search space: 2671138235207
effective search space used: 2671138235207
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 78 (34.7 bits)