BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1007
(445 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 108/341 (31%), Positives = 161/341 (47%), Gaps = 75/341 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSE--VVLDEGLCLWF 156
GK ++++R+SGPD+ ++ + V PR A I + E +DE + +++
Sbjct: 44 GKGAIAILRLSGPDSWKIVQKHLRTRSKIV--PRKA----IHGWIHENGEDVDEVVVVFY 97
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P S+TGED E HG V+ +L K G R AEPGEF+KRAF N K+DLT E
Sbjct: 98 KSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLK-SGARMAEPGEFTKRAFLNGKMDLTSAE 156
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
A+ DLI+A++E + +L +KG L+ ++D E+IE
Sbjct: 157 AVRDLIEAKSETSLKLSLRNLKGGLRD------------------FVDSLRRELIE---- 194
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
LA + +D+ D I
Sbjct: 195 ------------------------------------VLAEIRVELDYP------DEIETN 212
Query: 337 VRSQVVQLHGSIEKHIELSNKC--GVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
V +L EK E K G+ + G++ VIVG+PNVGKS+L+N L + +IVT
Sbjct: 213 TGEVVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVT 272
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IPGTTRDVI + + I G ++DTAG+R+ T+D++E G
Sbjct: 273 DIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLG 313
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 158/341 (46%), Gaps = 68/341 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSM--ACYPDQKVSKPR--YASLRNIVDPVSEVVLDEGLCL 154
G ++++R+SG L+ + + K+++ A + D E ++DE + L
Sbjct: 26 GVGALAIVRISGAGVLDLADRVFRKVHGSGKLAEAAGYTAHFGRLYD--GEEMVDEVIAL 83
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
F P SFT E EF HG V+ +L + G R AEPGEF++RAF N ++DL Q
Sbjct: 84 VFRAPRSFTAEQMVEFTCHGGPVVVGRVLRLMLD-NGCRLAEPGEFTRRAFLNGRIDLLQ 142
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
EA+G++I A TE AY
Sbjct: 143 AEAIGEMIHARTE--------------------------------SAY------------ 158
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
R+ V Q+ G +LS + G I+S C A +E +DFSE+++ E
Sbjct: 159 -----RTAVSQMKG------DLSVRLGGLREQLIRS--C-ALIELELDFSEEDV-EFQSR 203
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
+ + Q+ L + + I+ S + G + G+ +VI G+PN GKS+L+N L ++ +IV+
Sbjct: 204 DELTMQIETLRSEVNRLID-SYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVS 262
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
+PGTTRD IE+ L DTAGLR + IE EG
Sbjct: 263 HMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEE-IEHEG 302
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 113/224 (50%), Gaps = 18/224 (8%)
Query: 96 PRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLW 155
P+ G G+ +RVSG + +++ P ++V + I P + ++DE L L
Sbjct: 19 PQQGSVGI--VRVSGSQAIAIAQTLFDAPGKQVWESHRILYGYIRHPQTRQIVDEALLLL 76
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
P S+T ED EF HG I + +L L G R A+PGEF+ RAF N +LDLTQ
Sbjct: 77 MKAPRSYTREDVVEFHCHGGIIAVQQVL-QLCLESGARLAQPGEFTLRAFLNGRLDLTQA 135
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSE------DE 269
E++ DL+ A + Q AL ++G L + R L+ LA +EA IDF E DE
Sbjct: 136 ESIADLVGARSPQAAQTALAGLQGKLAHPIRQLRANCLDILAEIEARIDFEEDLPPLDDE 195
Query: 270 IIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
I +I N + +++ QL + +K G +R+G+K I
Sbjct: 196 AIISDIEN-IAAEISQLLATKDK--------GELLRTGLKVAIV 230
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 84/136 (61%), Gaps = 18/136 (13%)
Query: 314 LASVEAYIDFSED------EIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK 367
LA +EA IDF ED E I +I N + +++ QL + +K G +R+G+K
Sbjct: 176 LAEIEARIDFEEDLPPLDDEAIISDIEN-IAAEISQLLATKDK--------GELLRTGLK 226
Query: 368 SVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT 427
IVG PNVGKSSL+N Q +IVT +PGTTRDV+E L +GG PV +LDTAG+R T
Sbjct: 227 VAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIR-ET 285
Query: 428 SDIIETEGNLLEKNNQ 443
SD +E G +E++ Q
Sbjct: 286 SDQVEKIG--VERSRQ 299
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 22 SHLAIKNTIFALSSG--HGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIV 79
SH+AI TI A+++ + V ++RVSG + +++ P ++V + I
Sbjct: 2 SHMAITGTIAAIATAIVPQQGSVGIVRVSGSQAIAIAQTLFDAPGKQVWESHRILYGYIR 61
Query: 80 DPVSKVVLDEGLCLWF--PR 97
P ++ ++DE L L PR
Sbjct: 62 HPQTRQIVDEALLLLMKAPR 81
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 51/72 (70%)
Query: 359 GVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILL 418
G +R G+K VI G PN GKSSL+N L ++ +IVT I GTTRDV+ +H+ I G P+ ++
Sbjct: 1 GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHII 60
Query: 419 DTAGLRTTTSDI 430
DTAGLR + ++
Sbjct: 61 DTAGLREASDEV 72
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 48/66 (72%)
Query: 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424
G+K VI G PN GKSSL+N L ++ +IVT I GTTRDV+ +H+ I G P+ ++DTAGLR
Sbjct: 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR 63
Query: 425 TTTSDI 430
+ ++
Sbjct: 64 EASDEV 69
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 47/66 (71%)
Query: 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424
G K VI G PN GKSSL+N L ++ +IVT I GTTRDV+ +H+ I G P+ ++DTAGLR
Sbjct: 4 GXKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGLR 63
Query: 425 TTTSDI 430
+ ++
Sbjct: 64 EASDEV 69
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 349 EKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHL 408
EK ++L +K I IK IVG PNVGKS+L N + K+ ++V+ IPGTTRD ++ +
Sbjct: 166 EKGLDLESKP--EITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEV 223
Query: 409 DIGGYPVILLDTAGLR 424
I G + +DTAGLR
Sbjct: 224 FIDGRKYVFVDTAGLR 239
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428
+IVG PNVGKS+L N L +K+ +IV G TRD ++ ++ G L+DT G+
Sbjct: 5 LIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ 64
Query: 429 DII 431
DII
Sbjct: 65 DII 67
>pdb|1XZP|B Chain B, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
Length = 150
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK ++++R+SGPD+ ++ + V PR A I + + +DE + +++
Sbjct: 44 GKGAIAILRLSGPDSWKIVQKHLRTRSKIV--PRKAIHGWIHE--NGEDVDEVVVVFYKS 99
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKL 210
P S+TGED E HG V+ +L K G R AEPGEF+KRAF N K+
Sbjct: 100 PKSYTGEDMVEVMCHGGPLVVKKLLDLFLK-SGARMAEPGEFTKRAFLNGKM 150
>pdb|1XZQ|B Chain B, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 149
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK ++++R+SGPD+ ++ + V PR A I + + +DE + +++
Sbjct: 44 GKGAIAILRLSGPDSWKIVQKHLRTRSKIV--PRKAIHGWIHE--NGEDVDEVVVVFYKS 99
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNK 209
P S+TGED E HG V+ +L K G R AEPGEF+KRAF N K
Sbjct: 100 PKSYTGEDMVEVMCHGGPLVVKKLLDLFLK-SGARMAEPGEFTKRAFLNGK 149
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 9/79 (11%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426
K VIVG PNVGKSSL N L +K+ ++V +PG TRD+ E ++ +L+DT GL +
Sbjct: 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWS- 61
Query: 427 TSDIIETEGNLLEKNNQQR 445
G+ EK Q++
Sbjct: 62 --------GDKWEKKIQEK 72
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424
I+ ++G PNVGKSSL+N + ++ IV+++ GTTRD ++ +++DTAG+R
Sbjct: 196 IQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMR 254
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGL 423
IVG PNVGKS++ N + ++ISIV PG TRD I + Y L+DT G+
Sbjct: 28 IVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI 81
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGL 423
IVG PNVGKS++ N + ++ISIV PG TRD I + Y L+DT G+
Sbjct: 8 IVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI 61
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424
I+ ++G PNVGKSSL+N ++ IV+++ GTTRD ++ +++DTAG R
Sbjct: 176 IQFCLIGRPNVGKSSLVNAXLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGXR 234
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY-PVILLDTAGL 423
V+ G NVGKSS MN L + +SIV+ GTT D + K +++ PV L+DT GL
Sbjct: 38 VVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGL 93
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 32/54 (59%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGL 423
IVG PNVGKS+L+N L ++ISI + TTR I G Y I +DT GL
Sbjct: 10 IVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL 63
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 32/54 (59%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGL 423
IVG PNVGKS+L+N L ++ISI + TTR I G Y I +DT GL
Sbjct: 13 IVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL 66
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGL 423
IVG+PNVGKS+L+N L +++ ++ P TTR + L G ++ +DT GL
Sbjct: 12 IVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGL 65
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 8/67 (11%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP----VILLDTAGL-R 424
IVG+PNVGKS+L+N L ++SI++ GTTR + L + P +I LDT G+
Sbjct: 14 IVGKPNVGKSTLLNNLLGTKVSIISPKAGTTR---MRVLGVKNIPNEAQIIFLDTPGIYE 70
Query: 425 TTTSDII 431
SD++
Sbjct: 71 PKKSDVL 77
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 8/67 (11%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP----VILLDTAGL-R 424
IVG+PNVGKS+L+N L ++SI++ GTTR + L + P +I LDT G+
Sbjct: 15 IVGKPNVGKSTLLNNLLGTKVSIISPKAGTTR---MRVLGVKNIPNEAQIIFLDTPGIYE 71
Query: 425 TTTSDII 431
SD++
Sbjct: 72 PKKSDVL 78
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Query: 359 GVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILL 418
GV+ R+ I+++I+G PNVGKS+L+N L +K I+ PG T ++ + + G + LL
Sbjct: 115 GVKPRA-IRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTS--QQWVKV-GKELELL 170
Query: 419 DTAGL 423
DT G+
Sbjct: 171 DTPGI 175
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDV 403
VG NVGKSSL+N L ++I+ V+ PG TR +
Sbjct: 28 FVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSI 61
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 27/127 (21%)
Query: 316 SVEAY-IDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKS------ 368
+ AY +DFS E I +LN V + + +K +E K G R+ + K
Sbjct: 36 ATSAYGVDFSRKETI--ILLNKVD---IADEKTTKKWVEFFKKQGKRVITTHKGEPRKVL 90
Query: 369 ------------VIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI 416
+IVG PN GKS+++N L K+ S V + PG T+ + L+ G V
Sbjct: 91 LKKLSFDRLARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENG---VK 147
Query: 417 LLDTAGL 423
+LDT G+
Sbjct: 148 ILDTPGI 154
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGL 423
VI G PNVGKS+L+ L + I S P TTR + + G + ++DT GL
Sbjct: 171 VIAGHPNVGKSTLLKALTTAKPEI-ASYPFTTRGINVGQFEDGYFRYQIIDTPGL 224
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 361 RIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS----IVTS-IPGTTRDVIEKHLDIGGYPV 415
R R G +VG NVGKS+ +N + ++ I TS PGTT D+IE L+ G
Sbjct: 158 RYREGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGA--- 214
Query: 416 ILLDTAGL 423
L DT G+
Sbjct: 215 TLYDTPGI 222
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLD--IGGYPVILLDTAGL 423
++ G PNVGKSS MN + + + V S TT+++ H D + Y +I DT GL
Sbjct: 33 ILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQII--DTPGL 86
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
++G PNVGKS++ N L + + I + PG T + E + G ++D G+ + T++
Sbjct: 9 LIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTAN 67
Query: 430 IIE 432
I+
Sbjct: 68 SID 70
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAG 422
+K + G PNVGK+SL N L + V + PG T + E GY + L+D G
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAG 422
+K + G PNVGK+SL N L + V + PG T + E GY + L+D G
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
++G PNVGKS++ N L + + I + PG T + E + G ++D G+ + T++
Sbjct: 12 LIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTAN 70
Query: 430 IIE 432
I+
Sbjct: 71 SID 73
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
++G PNVGKS++ N L + + I + PG T + E + G ++D G+ + T++
Sbjct: 8 LIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTAN 66
Query: 430 IIE 432
I+
Sbjct: 67 SID 69
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAG 422
+K + G PNVGK+SL N L + V + PG T + E GY + L+D G
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
++G PNVGKS++ N L + + I + PG T + E + G ++D G+ + T++
Sbjct: 8 LIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTAN 66
Query: 430 IIE 432
I+
Sbjct: 67 SID 69
>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm:
Functional Insights For An Aaa+ Hexameric Helicase
Length = 595
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 322 DFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGV-------RIRSGIKSVIVGEP 374
D ++D I D I++++ + H +++ + L+ GV RIR I +I+G+P
Sbjct: 278 DLAKDPWIRDRIISSIAPSIYG-HWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDP 336
Query: 375 NVGKSSLMNFLCQ 387
KS ++ F+ +
Sbjct: 337 GTAKSQMLQFISR 349
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 25/138 (18%)
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILN 335
LN R QV+QL GS E S+ G + ++ LA D + I +++ L+
Sbjct: 131 LNKARQQVLQLLGSNETG---SSAAGTNSNANTPTLDSLAR-----DLTA--IAKEDSLD 180
Query: 336 TV--RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIV 393
V RS+ +Q + IE+ ++ R+ V++GEP VGK+++ L Q+ I+
Sbjct: 181 PVIGRSKEIQ------RVIEVLSR-----RTKNNPVLIGEPGVGKTAIAEGLAQQIIN-- 227
Query: 394 TSIPGTTRDVIEKHLDIG 411
+P RD LD+G
Sbjct: 228 NEVPEILRDKRVMTLDMG 245
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 25/138 (18%)
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILN 335
LN R QV+QL GS E S+ G + ++ LA D + I +++ L+
Sbjct: 131 LNKARQQVLQLLGSNETG---SSAAGTNSNANTPTLDSLAR-----DLTA--IAKEDSLD 180
Query: 336 TV--RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIV 393
V RS+ +Q + IE+ ++ R+ V++GEP VGK+++ L Q+ I+
Sbjct: 181 PVIGRSKEIQ------RVIEVLSR-----RTKNNPVLIGEPGVGKTAIAEGLAQQIIN-- 227
Query: 394 TSIPGTTRDVIEKHLDIG 411
+P RD LD+G
Sbjct: 228 NEVPEILRDKRVMTLDMG 245
>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
pdb|4DHE|B Chain B, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
Length = 223
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 369 VIVGEPNVGKSSLMNFLC-QKQISIVTSIPGTTRDV 403
G N GKS+ +N LC QK+++ + PG T+ +
Sbjct: 33 AFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI 68
>pdb|3LZ6|A Chain A, Guinea Pig 11beta Hydroxysteroid Dehydrogenase With
Pf-877423
pdb|3LZ6|B Chain B, Guinea Pig 11beta Hydroxysteroid Dehydrogenase With
Pf-877423
pdb|3LZ6|C Chain C, Guinea Pig 11beta Hydroxysteroid Dehydrogenase With
Pf-877423
pdb|3LZ6|D Chain D, Guinea Pig 11beta Hydroxysteroid Dehydrogenase With
Pf-877423
Length = 263
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 171 QVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFN--------NKLDLTQTEALGDLI 222
Q GSIAV++++ G +T P + P +F+ FF+ NK++++ T + LI
Sbjct: 135 QSQGSIAVVSSVAGKIT-YPLIAPYSASKFALDGFFSTLRSEFLVNKVNVSITLCILGLI 193
Query: 223 QAETELQRQKALH 235
ET ++ ++
Sbjct: 194 DTETAIKATSGIY 206
>pdb|3G49|A Chain A, N-(Pyridin-2-Yl) Arylsulfonamide Inhibitors Of
11b-Hydroxysteroid Dehydrogenase Type 1: Discovery Of
Pf-915275
pdb|3G49|B Chain B, N-(Pyridin-2-Yl) Arylsulfonamide Inhibitors Of
11b-Hydroxysteroid Dehydrogenase Type 1: Discovery Of
Pf-915275
pdb|3G49|C Chain C, N-(Pyridin-2-Yl) Arylsulfonamide Inhibitors Of
11b-Hydroxysteroid Dehydrogenase Type 1: Discovery Of
Pf-915275
pdb|3G49|D Chain D, N-(Pyridin-2-Yl) Arylsulfonamide Inhibitors Of
11b-Hydroxysteroid Dehydrogenase Type 1: Discovery Of
Pf-915275
Length = 277
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 171 QVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFN--------NKLDLTQTEALGDLI 222
Q GSIAV++++ G +T P + P +F+ FF+ NK++++ T + LI
Sbjct: 137 QSQGSIAVVSSVAGKIT-YPLIAPYSASKFALDGFFSTLRSEFLVNKVNVSITLCILGLI 195
Query: 223 QAETELQRQKALH 235
ET ++ ++
Sbjct: 196 DTETAIKATSGIY 208
>pdb|3DWF|A Chain A, Crystal Structure Of The Guinea Pig 11beta-Hydroxysteroid
Dehydrogenase Type 1 Mutant F278e
pdb|3DWF|B Chain B, Crystal Structure Of The Guinea Pig 11beta-Hydroxysteroid
Dehydrogenase Type 1 Mutant F278e
pdb|3DWF|C Chain C, Crystal Structure Of The Guinea Pig 11beta-Hydroxysteroid
Dehydrogenase Type 1 Mutant F278e
pdb|3DWF|D Chain D, Crystal Structure Of The Guinea Pig 11beta-Hydroxysteroid
Dehydrogenase Type 1 Mutant F278e
Length = 276
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 171 QVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFN--------NKLDLTQTEALGDLI 222
Q GSIAV++++ G +T P + P +F+ FF+ NK++++ T + LI
Sbjct: 137 QSQGSIAVVSSVAGKIT-YPLIAPYSASKFALDGFFSTLRSEFLVNKVNVSITLCILGLI 195
Query: 223 QAETELQRQKALH 235
ET ++ ++
Sbjct: 196 DTETAIKATSGIY 208
>pdb|1XSE|A Chain A, Crystal Structure Of Guinea Pig 11beta-Hydroxysteroid
Dehydrogenase Type 1
pdb|1XSE|B Chain B, Crystal Structure Of Guinea Pig 11beta-Hydroxysteroid
Dehydrogenase Type 1
Length = 295
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 171 QVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFN--------NKLDLTQTEALGDLI 222
Q GSIAV++++ G +T P + P +F+ FF+ NK++++ T + LI
Sbjct: 158 QSQGSIAVVSSVAGKIT-YPLIAPYSASKFALDGFFSTLRSEFLVNKVNVSITLCILGLI 216
Query: 223 QAETELQRQKALH 235
ET ++ ++
Sbjct: 217 DTETAIKATSGIY 229
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 363 RSGIKSVIVGEPNVGKSSLMN-----FLCQKQISIVTS-IPGTTRDVIEKHLD 409
R G +VG NVGKS+ +N F + + I TS PGTT D+I+ LD
Sbjct: 158 RGGKDVYVVGCTNVGKSTFINRXIKEFSDETENVITTSHFPGTTLDLIDIPLD 210
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
K V+VG P VGKS+L L Q V T D K + I G +L LDTAG
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
K V+VG P VGKS+L L Q V T D K + I G +L LDTAG
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 361 RIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
R + +K IVG PNVGKS+ N L Q S
Sbjct: 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQAS 48
>pdb|1PUI|A Chain A, Structure Of Engb Gtpase
pdb|1PUI|B Chain B, Structure Of Engb Gtpase
Length = 210
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 364 SGIKSVIVGEPNVGKSSLMNFLC-QKQISIVTSIPGTTR 401
+GI+ G N GKSS +N L QK ++ + PG T+
Sbjct: 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQ 63
>pdb|1Y5M|A Chain A, The Crystal Structure Of Murine 11b-Hydroxysteroid
Dehydrogenase: An Important Therapeutic Target For
Diabetes
pdb|1Y5M|B Chain B, The Crystal Structure Of Murine 11b-Hydroxysteroid
Dehydrogenase: An Important Therapeutic Target For
Diabetes
pdb|1Y5R|A Chain A, The Crystal Structure Of Murine 11b-hydroxysteroid
Dehydrogenase Complexed With Corticosterone
pdb|1Y5R|B Chain B, The Crystal Structure Of Murine 11b-hydroxysteroid
Dehydrogenase Complexed With Corticosterone
Length = 276
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 171 QVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFN--------NKLDLTQTEALGDLI 222
Q +GSIAVI+++ G +T+ P + P +F+ FF+ K++++ T + LI
Sbjct: 144 QSNGSIAVISSLAGKMTQ-PMIAPYSASKFALDGFFSTIRTELYITKVNVSITLCVLGLI 202
Query: 223 QAETELQ 229
ET ++
Sbjct: 203 DTETAMK 209
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 365 GIKSVIVGEPNVGKSSLMNFLCQKQI 390
G K IVG PNVGKS+L N L + I
Sbjct: 2 GFKCGIVGLPNVGKSTLFNALTKAGI 27
>pdb|3DI4|A Chain A, Crystal Structure Of A Duf1989 Family Protein (spo0365)
From Silicibacter Pomeroyi Dss-3 At 1.60 A Resolution
pdb|3DI4|B Chain B, Crystal Structure Of A Duf1989 Family Protein (spo0365)
From Silicibacter Pomeroyi Dss-3 At 1.60 A Resolution
Length = 286
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 51 DTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPRHGKC 101
D A+K + CYP+ +P+P A R K G L PR G+C
Sbjct: 14 DARRAVKPVICYPNDSLPRPDLALYRAARASARKT----GEVLVPPREGRC 60
>pdb|3GMD|A Chain A, Structure-Based Design Of 7-Azaindole-Pyrrolidines As
Inhibitors Of 11beta-Hydroxysteroid-Dehydrogenase Type I
pdb|3GMD|B Chain B, Structure-Based Design Of 7-Azaindole-Pyrrolidines As
Inhibitors Of 11beta-Hydroxysteroid-Dehydrogenase Type I
pdb|3GMD|C Chain C, Structure-Based Design Of 7-Azaindole-Pyrrolidines As
Inhibitors Of 11beta-Hydroxysteroid-Dehydrogenase Type I
pdb|3GMD|D Chain D, Structure-Based Design Of 7-Azaindole-Pyrrolidines As
Inhibitors Of 11beta-Hydroxysteroid-Dehydrogenase Type I
pdb|3GMD|E Chain E, Structure-Based Design Of 7-Azaindole-Pyrrolidines As
Inhibitors Of 11beta-Hydroxysteroid-Dehydrogenase Type I
pdb|3GMD|F Chain F, Structure-Based Design Of 7-Azaindole-Pyrrolidines As
Inhibitors Of 11beta-Hydroxysteroid-Dehydrogenase Type I
pdb|3GMD|G Chain G, Structure-Based Design Of 7-Azaindole-Pyrrolidines As
Inhibitors Of 11beta-Hydroxysteroid-Dehydrogenase Type I
pdb|3GMD|H Chain H, Structure-Based Design Of 7-Azaindole-Pyrrolidines As
Inhibitors Of 11beta-Hydroxysteroid-Dehydrogenase Type I
Length = 264
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 171 QVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFN--------NKLDLTQTEALGDLI 222
Q +GSIAVI+++ G +T P + P +F+ FF+ K++++ T + LI
Sbjct: 135 QSNGSIAVISSLAGKVT-YPMVAPYSASKFALDGFFSTIRTELYITKVNVSITLCVLGLI 193
Query: 223 QAETELQ 229
ET ++
Sbjct: 194 DTETAMK 200
>pdb|2D6F|A Chain A, Crystal Structure Of Glu-Trna(Gln) Amidotransferase In The
Complex With Trna(Gln)
pdb|2D6F|B Chain B, Crystal Structure Of Glu-Trna(Gln) Amidotransferase In The
Complex With Trna(Gln)
Length = 435
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 387 QKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGL 423
+++++ + S PG + D+I+ HLD GY I+++ GL
Sbjct: 301 EERVAFIKSYPGISPDIIKWHLD-EGYRGIVIEGTGL 336
>pdb|3PS0|A Chain A, The Structure Of The Crispr-Associated Protein, Csa2, From
Sulfolobus Solfataricus
pdb|3PS0|B Chain B, The Structure Of The Crispr-Associated Protein, Csa2, From
Sulfolobus Solfataricus
pdb|3PS0|C Chain C, The Structure Of The Crispr-Associated Protein, Csa2, From
Sulfolobus Solfataricus
pdb|3PS0|D Chain D, The Structure Of The Crispr-Associated Protein, Csa2, From
Sulfolobus Solfataricus
Length = 328
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 23/127 (18%)
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEW-------RQLILES---LASVEAYIDF-- 265
G+ ++ E EL+RQKA ++K +K LYS R L S ++ V DF
Sbjct: 208 FGEKVKGEEELERQKA-KRVKSAIKALYSLLSGNFGGKRSRFLPSMKLMSLVVTKTDFPF 266
Query: 266 -----SEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAY 320
+D+ I+ I+ +++ V L+G++ K ++N+ G+ + G V L++VE
Sbjct: 267 MPEPAHDDDYIKTTIMRLGKAKGV-LNGNLAKAYVINNE-GIEVGEG---VTVLSTVEDL 321
Query: 321 IDFSEDE 327
+ E+E
Sbjct: 322 VVKLEEE 328
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,058,916
Number of Sequences: 62578
Number of extensions: 469131
Number of successful extensions: 1458
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1410
Number of HSP's gapped (non-prelim): 85
length of query: 445
length of database: 14,973,337
effective HSP length: 102
effective length of query: 343
effective length of database: 8,590,381
effective search space: 2946500683
effective search space used: 2946500683
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)