BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1007
(445 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8GTM1|MNME_RICRS tRNA modification GTPase MnmE OS=Rickettsia rickettsii (strain
Sheila Smith) GN=mnmE PE=3 SV=1
Length = 445
Score = 239 bits (610), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 137/337 (40%), Positives = 187/337 (55%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGP +L L+ + D K R + I P ++ ++D + ++F
Sbjct: 12 GKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELIDNVMVVYFKS 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E HGS A+ + AL + G+R AE GEF+KRAF NNKLDLT E +
Sbjct: 69 PGSFTGEDVVEIHTHGSKAISIMLTNALLNIAGIRLAEAGEFTKRAFLNNKLDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q ++A+ Q G L+ LY+ W
Sbjct: 129 ADLINAETIMQHKQAIRQASGKLEALYNNW------------------------------ 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RSQ++++ L+ +EAYIDF DE I D +LN V
Sbjct: 159 -RSQLLKI---------------------------LSLLEAYIDFP-DEDIPDTVLNEVT 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L +I +++ N+ G +RSG+K I+G PNVGKSSL+NFL Q+ I+IV++I G
Sbjct: 190 NTHTILVNTISEYLN-DNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+R +SDIIE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEG 285
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + D K R + I P +K ++D
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELID 59
Query: 89 EGLCLWFPRHG 99
+ ++F G
Sbjct: 60 NVMVVYFKSPG 70
>sp|B0BV57|MNME_RICRO tRNA modification GTPase MnmE OS=Rickettsia rickettsii (strain
Iowa) GN=mnmE PE=3 SV=1
Length = 445
Score = 239 bits (610), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 137/337 (40%), Positives = 187/337 (55%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGP +L L+ + D K R + I P ++ ++D + ++F
Sbjct: 12 GKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELIDNVMVVYFKS 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E HGS A+ + AL + G+R AE GEF+KRAF NNKLDLT E +
Sbjct: 69 PGSFTGEDVVEIHTHGSKAISIMLTNALLNIAGIRLAEAGEFTKRAFLNNKLDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q ++A+ Q G L+ LY+ W
Sbjct: 129 ADLINAETIMQHKQAIRQASGKLEALYNNW------------------------------ 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RSQ++++ L+ +EAYIDF DE I D +LN V
Sbjct: 159 -RSQLLKI---------------------------LSLLEAYIDFP-DEDIPDTVLNEVT 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L +I +++ N+ G +RSG+K I+G PNVGKSSL+NFL Q+ I+IV++I G
Sbjct: 190 NTHTILVNTISEYLN-DNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+R +SDIIE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEG 285
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + D K R + I P +K ++D
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELID 59
Query: 89 EGLCLWFPRHG 99
+ ++F G
Sbjct: 60 NVMVVYFKSPG 70
>sp|Q92GE8|MNME_RICCN tRNA modification GTPase MnmE OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=mnmE PE=3 SV=1
Length = 445
Score = 238 bits (607), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 136/337 (40%), Positives = 186/337 (55%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGP +L L+ + D K R + I P ++ ++D + ++F
Sbjct: 12 GKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELIDNVMVVYFKS 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E HGS A+ + AL + G+R AE GEF+KRAF NNK DLT E +
Sbjct: 69 PGSFTGEDVVEIHTHGSKAISIMLTNALLNIAGIRLAEAGEFTKRAFLNNKFDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q ++A+ Q G L+ LY+ W
Sbjct: 129 ADLINAETIMQHKQAIRQASGKLEALYNNW------------------------------ 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RSQ++++ L+ +EAYIDF DE I D +LN V
Sbjct: 159 -RSQLLKM---------------------------LSLLEAYIDFP-DEDIPDTVLNEVT 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L +I +++ N+ G +RSG+K I+G PNVGKSSL+NFL Q+ I+IV++I G
Sbjct: 190 NTHTILVNTISEYLN-DNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+R +SDIIE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEG 285
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + D K R + I P +K ++D
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELID 59
Query: 89 EGLCLWFPRHGK-CGVSVIRV 108
+ ++F G G V+ +
Sbjct: 60 NVMVVYFKSPGSFTGEDVVEI 80
>sp|A8EZV9|MNME_RICCK tRNA modification GTPase MnmE OS=Rickettsia canadensis (strain
McKiel) GN=mnmE PE=3 SV=1
Length = 445
Score = 236 bits (601), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 135/337 (40%), Positives = 183/337 (54%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGP +L L+ + D K R + I P S ++D + ++F
Sbjct: 12 GKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITFPESGELIDNAMVVYFKS 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E HGS A+ ++ AL +P +R AE GEF+KRAF NNK DLT E +
Sbjct: 69 PGSFTGEDVAEIYTHGSKAISIMLINALLNIPNIRLAEAGEFTKRAFLNNKFDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q ++A+ Q G L++LY+ W
Sbjct: 129 ADLINAETIMQHRQAIRQAGGALEELYNNW------------------------------ 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R Q++Q+ ++ +EAYIDF DE I D+ILN V
Sbjct: 159 -REQLLQI---------------------------ISLLEAYIDFP-DEDIPDSILNKVN 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L I ++ N+ G + SG+K I+G PN GKSSL+NFL Q+ I+IV++I G
Sbjct: 190 NTHTNLINEISNYLN-DNRRGELLNSGLKLAIIGPPNAGKSSLLNFLMQRDIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+R +SDIIE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEG 285
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + D K R + I P S ++D
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITFPESGELID 59
Query: 89 EGLCLWFPRHG 99
+ ++F G
Sbjct: 60 NAMVVYFKSPG 70
>sp|Q1RKJ6|MNME_RICBR tRNA modification GTPase MnmE OS=Rickettsia bellii (strain
RML369-C) GN=mnmE PE=3 SV=1
Length = 445
Score = 235 bits (600), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 132/337 (39%), Positives = 188/337 (55%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V RVSG +L LK + + KPR+ + + P S ++D + ++F
Sbjct: 12 GKAGVAVFRVSGTKSLEVLKLLTGKSN---FKPRFMYYQKLTSPESNDLIDNAMVVYFKA 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E HGS A+ + AL +PG+R AE GEF+KRAF NNK DLT E +
Sbjct: 69 PNSFTGEDVVEIHTHGSKAISIMLTNALLNIPGVRLAEAGEFTKRAFLNNKFDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q ++A+ Q G L++LY+ W
Sbjct: 129 ADLINAETIMQHKQAIRQAGGALEELYNSW------------------------------ 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RSQ++++ ++ +EAYIDF DE I +++L V
Sbjct: 159 -RSQLLRI---------------------------ISLLEAYIDFP-DEDIPESVLKDVT 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L +I +++ N+ G +RSG+K I+G PN GKSSL+NFL ++ I+IV++I G
Sbjct: 190 NTHKTLINTISEYLN-DNRKGELLRSGLKLAIIGPPNAGKSSLLNFLMRRDIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+R ++D+IE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIRGESNDVIEQEG 285
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V RVSG +L LK + + KPR+ + + P S ++D
Sbjct: 3 TIFAQSSSFGKAGVAVFRVSGTKSLEVLKLLTGKSNF---KPRFMYYQKLTSPESNDLID 59
Query: 89 EGLCLWF 95
+ ++F
Sbjct: 60 NAMVVYF 66
>sp|A8GUF3|MNME_RICB8 tRNA modification GTPase MnmE OS=Rickettsia bellii (strain OSU
85-389) GN=mnmE PE=3 SV=1
Length = 445
Score = 235 bits (600), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 132/337 (39%), Positives = 188/337 (55%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V RVSG +L LK + + KPR+ + + P S ++D + ++F
Sbjct: 12 GKAGVAVFRVSGTKSLEVLKLLTGKSN---FKPRFMYYQKLTSPESNDLIDNAMVVYFKA 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E HGS A+ + AL +PG+R AE GEF+KRAF NNK DLT E +
Sbjct: 69 PNSFTGEDVVEIHTHGSKAISIMLTNALLNIPGVRLAEAGEFTKRAFLNNKFDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q ++A+ Q G L++LY+ W
Sbjct: 129 ADLINAETIMQHKQAIRQAGGALEELYNSW------------------------------ 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RSQ++++ ++ +EAYIDF DE I +++L V
Sbjct: 159 -RSQLLRI---------------------------ISLLEAYIDFP-DEDIPESVLKDVT 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L +I +++ N+ G +RSG+K I+G PN GKSSL+NFL ++ I+IV++I G
Sbjct: 190 NTHKTLINTISEYLN-DNRKGELLRSGLKLAIIGPPNAGKSSLLNFLMRRDIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+R ++D+IE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIRGESNDVIEQEG 285
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V RVSG +L LK + + KPR+ + + P S ++D
Sbjct: 3 TIFAQSSSFGKAGVAVFRVSGTKSLEVLKLLTGKSNF---KPRFMYYQKLTSPESNDLID 59
Query: 89 EGLCLWF 95
+ ++F
Sbjct: 60 NAMVVYF 66
>sp|A8GPN6|MNME_RICAH tRNA modification GTPase MnmE OS=Rickettsia akari (strain Hartford)
GN=mnmE PE=3 SV=1
Length = 445
Score = 234 bits (596), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 133/337 (39%), Positives = 187/337 (55%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGP +L L+ + +K KPR + I+ P ++ ++D + ++F
Sbjct: 12 GKAGVAVFRISGPKSLEVLQLLTG---KKAFKPRLMYYQQIIAPETKELIDNAMVVYFKL 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E HGS A+ ++ L + +R AE GEF+KRAF NNK DLT E +
Sbjct: 69 PNSFTGEDVVEIHTHGSKAISIMMINTLLNISDIRLAEAGEFTKRAFLNNKFDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q ++A+ Q G L++LY N+
Sbjct: 129 ADLINAETIMQHRQAIRQASGRLEELY-------------------------------NS 157
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RSQ++++ ++ +EAYIDF DE I D++LN V
Sbjct: 158 WRSQLLKI---------------------------ISLLEAYIDFP-DEDIPDSVLNDVN 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L I ++ N+ G + SG+K IVG PN GKSSL+NFL Q+ I++V++I G
Sbjct: 190 NTHKNLVNEISNYLN-DNRRGELLNSGLKLAIVGPPNTGKSSLLNFLMQRDIAMVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+R +SDIIE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEG 285
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + +K KPR + I+ P +K ++D
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTG---KKAFKPRLMYYQQIIAPETKELID 59
Query: 89 EGLCLWF 95
+ ++F
Sbjct: 60 NAMVVYF 66
>sp|Q501Z5|GTPB3_DANRE tRNA modification GTPase GTPBP3, mitochondrial OS=Danio rerio
GN=gtpbp3 PE=2 SV=1
Length = 500
Score = 231 bits (590), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 114/216 (52%), Positives = 147/216 (68%), Gaps = 5/216 (2%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
GKCGV+V+RVSGP + A++ + + + PR ASLR+I P S+ +LD GL LWFP
Sbjct: 44 QGKCGVAVVRVSGPASALAVRRLT----RSLPAPRTASLRSISHPQSKELLDRGLVLWFP 99
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGED EF +HG AVI+ +L AL LPGLRPAE GEF++RAF+ KLDLT+ E
Sbjct: 100 GPASFTGEDSAEFHIHGGPAVISGVLQALGSLPGLRPAEAGEFTRRAFYAGKLDLTEVEG 159
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL QM G+L ++Y +W + LA VEA+IDFSEDE+IED +LN
Sbjct: 160 LSDLIHAETEAQRRQALRQMAGDLGRIYQDWTDQLKRCLAHVEAFIDFSEDELIEDGVLN 219
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
V V QL +E H+ + G R+RSG+ VI
Sbjct: 220 DVDRAVQQLQTDMENHLS-DERRGERLRSGVHVVIA 254
Score = 135 bits (341), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/123 (57%), Positives = 86/123 (69%), Gaps = 2/123 (1%)
Query: 313 CLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVG 372
CLA VEA+IDFSEDE+IED +LN V V QL +E H+ + G R+RSG+ VI G
Sbjct: 197 CLAHVEAFIDFSEDELIEDGVLNDVDRAVQQLQTDMENHLS-DERRGERLRSGVHVVIAG 255
Query: 373 EPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIE 432
N GKSSL+N L Q+ +IV+ GTTRDV+E LDIGGYPV+L DTAGLR TSD +E
Sbjct: 256 STNAGKSSLLNLLTQRPAAIVSPTAGTTRDVLEVPLDIGGYPVLLSDTAGLR-DTSDSVE 314
Query: 433 TEG 435
EG
Sbjct: 315 QEG 317
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 52/76 (68%), Gaps = 4/76 (5%)
Query: 21 CSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVD 80
CS +TI++LSSG GKCGV+V+RVSGP + A++ + + +P PR ASLR+I
Sbjct: 28 CSGWPGDDTIYSLSSGQGKCGVAVVRVSGPASALAVRRLT----RSLPAPRTASLRSISH 83
Query: 81 PVSKVVLDEGLCLWFP 96
P SK +LD GL LWFP
Sbjct: 84 PQSKELLDRGLVLWFP 99
>sp|A8F2P7|MNME_RICM5 tRNA modification GTPase MnmE OS=Rickettsia massiliae (strain Mtu5)
GN=mnmE PE=3 SV=1
Length = 445
Score = 230 bits (586), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 134/337 (39%), Positives = 185/337 (54%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGP +L L+ + D K R + I P ++ ++D + ++F
Sbjct: 12 GKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELIDNVMVVYFKS 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E HGS A+ + AL + G+R AE GEF+KRAF NNK DLT E +
Sbjct: 69 PGSFTGEDVVEIHTHGSKAISIILTNALLNIAGIRLAEAGEFTKRAFLNNKFDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q ++A+ Q G L++LY N
Sbjct: 129 ADLINAETIMQHKQAIRQANGKLEELY-------------------------------NN 157
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RSQ++++ ++ +EAYIDF DE I D +LN V
Sbjct: 158 WRSQLLKI---------------------------ISLLEAYIDFP-DEDIPDTVLNEVT 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L +I +++ N+ G +RSG+K I+G PNVGKSSL+NFL Q+ I+IV++I G
Sbjct: 190 NTHTILVNTISEYLN-DNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+ +SDIIE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIGEESSDIIEQEG 285
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + D K R + I P +K ++D
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELID 59
Query: 89 EGLCLWFPRHGK-CGVSVIRV 108
+ ++F G G V+ +
Sbjct: 60 NVMVVYFKSPGSFTGEDVVEI 80
>sp|Q5GTQ0|MNME_WOLTR tRNA modification GTPase MnmE OS=Wolbachia sp. subsp. Brugia malayi
(strain TRS) GN=mnmE PE=3 SV=1
Length = 442
Score = 224 bits (572), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 139/348 (39%), Positives = 195/348 (56%), Gaps = 66/348 (18%)
Query: 88 DEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVV 147
DE + GK GV+VIR+SG +ALK++ + K KPR+A+L ++ D S+ +
Sbjct: 5 DETIFALSTVFGKSGVAVIRISGN---HALKALNHFHVNKDMKPRFATLVDLYDS-SDQL 60
Query: 148 LDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFN 207
+D G+ ++FP PNSFTGED E QVHG AVI +L L+++ + A+PGEF RAF N
Sbjct: 61 IDNGIAIYFPAPNSFTGEDVIELQVHGGKAVIKIVLEELSRIFVM--AKPGEFLLRAFLN 118
Query: 208 NKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSE 267
K DLTQ E + DLI AET++Q ++A+ KQ+ E LE L S
Sbjct: 119 GKFDLTQIEGIADLIDAETKMQAKQAI-------KQMSGE-----LEKLYS--------- 157
Query: 268 DEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDE 327
+ R +++ + IE AYIDF ED
Sbjct: 158 ----------SWRQRLIAVQSKIE---------------------------AYIDFPEDV 180
Query: 328 IIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQ 387
E N L + +V L SI++H+ N+ G R+R G+ VI GEPNVGKS+L NFL +
Sbjct: 181 ATEKNELEKINDEVQTLVQSIQEHLN-DNRRGERLREGLHIVITGEPNVGKSTLFNFLAR 239
Query: 388 KQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
+ I+IV+ GTTRD++E H+DIGGYP+IL DTAG+R +SD +E+EG
Sbjct: 240 RDIAIVSEYVGTTRDILEAHIDIGGYPIILSDTAGIR-ESSDPVESEG 286
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALS+ GK GV+VIR+SG L AL D KPR+A+L ++ D S ++D
Sbjct: 7 TIFALSTVFGKSGVAVIRISGNHALKALNHFHVNKDM---KPRFATLVDLYDS-SDQLID 62
Query: 89 EGLCLWFP 96
G+ ++FP
Sbjct: 63 NGIAIYFP 70
>sp|B3CMJ7|MNME_WOLPP tRNA modification GTPase MnmE OS=Wolbachia pipientis subsp. Culex
pipiens (strain wPip) GN=mnmE PE=3 SV=1
Length = 442
Score = 224 bits (572), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 139/337 (41%), Positives = 191/337 (56%), Gaps = 66/337 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+VIR+SG TL AL +K KPR+A+L ++ D ++++ D G+ ++FP
Sbjct: 16 GKSGVAVIRISGNYTLKALNHFHI---KKKIKPRFATLVDLYDDSNQLI-DNGIIIYFPA 71
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E QVHGS AVI IL L+K+ + A PGEFS RAF N K DLTQ E +
Sbjct: 72 PNSFTGEDVIELQVHGSKAVIKIILEKLSKIFVM--ARPGEFSLRAFLNGKFDLTQIEGI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET++Q ++A+ KQ+ E LE L S
Sbjct: 130 ADLIDAETKMQAKQAI-------KQISGE-----LERLYS-------------------N 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R +++ + + +EAYIDF ED E + L +
Sbjct: 159 WRQRLITIQ---------------------------SKIEAYIDFPEDIWAEKSELEKIN 191
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++V L I++H+ N+ G R+R G+ VI GEPNVGKS+L NFL ++ I+IV+ G
Sbjct: 192 NEVQSLVQLIQEHLN-DNRRGERLREGLHIVITGEPNVGKSTLFNFLAKRDIAIVSEYAG 250
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD++E H+DIGGYP+IL DTAG+R +SD IE+EG
Sbjct: 251 TTRDILEAHIDIGGYPIILSDTAGIR-ESSDPIESEG 286
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 127/285 (44%), Gaps = 68/285 (23%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALS+ GK GV+VIR+SG TL AL +K KPR+A+L ++ D S ++D
Sbjct: 7 TIFALSTVFGKSGVAVIRISGNYTLKALNHFHI---KKKIKPRFATLVDLYDD-SNQLID 62
Query: 89 EGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVL 148
G+ ++FP +G D + + + + V ++ I++ +S++ +
Sbjct: 63 NGIIIYFPAPNSF-------TGEDVI----ELQVHGSKAV-------IKIILEKLSKIFV 104
Query: 149 DEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNN 208
+P F+ A +N LT++ G+ E
Sbjct: 105 -------MARPGEFSLR-----------AFLNGKFD-LTQIEGIADLIDAE--------- 136
Query: 209 KLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSED 268
T+ +A + Q EL+R LYS WRQ ++ + +EAYIDF ED
Sbjct: 137 ----TKMQAKQAIKQISGELER-------------LYSNWRQRLITIQSKIEAYIDFPED 179
Query: 269 EIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
E + L + ++V L I++H+ N+ G R+R G+ VI
Sbjct: 180 IWAEKSELEKINNEVQSLVQLIQEHLN-DNRRGERLREGLHIVIT 223
>sp|C0R405|MNME_WOLWR tRNA modification GTPase MnmE OS=Wolbachia sp. subsp. Drosophila
simulans (strain wRi) GN=mnmE PE=3 SV=1
Length = 442
Score = 223 bits (569), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 139/337 (41%), Positives = 193/337 (57%), Gaps = 66/337 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+VIR+SG ALK++ + +K KPR+A+L ++ D S+++ D G+ ++FP
Sbjct: 16 GKSGVAVIRISGN---YALKALNHFHIKKEIKPRFATLVDLYDDSSQLI-DNGIIIYFPA 71
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E QVHGS AVI IL L+K+ + A+PGEFS RAF N K DLTQ E +
Sbjct: 72 PNSFTGEDVIELQVHGSKAVIKIILEELSKVFVM--AKPGEFSLRAFLNGKFDLTQIEGI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET++Q ++A+ KQ+ E LE L S
Sbjct: 130 ADLIDAETKMQAKQAI-------KQISGE-----LERLYS-------------------N 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R +++ + + +EAYIDF ED E + L +
Sbjct: 159 WRQRLITIQ---------------------------SKIEAYIDFPEDIWAEKSELEKIN 191
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++V L I++H+ N+ G R+R G+ VI GEPNVGKS+L NFL ++ I+IV+ G
Sbjct: 192 NEVQSLVRLIQEHLN-DNRRGERLREGLHIVITGEPNVGKSTLFNFLAKRDIAIVSEYAG 250
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD++E H+DIGGYP+IL DTAG+R +SD IE EG
Sbjct: 251 TTRDILEAHIDIGGYPIILSDTAGIR-ESSDPIELEG 286
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/285 (30%), Positives = 140/285 (49%), Gaps = 68/285 (23%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALS+ GK GV+VIR+SG ALK++ + +K KPR+A+L ++ D S+++ D
Sbjct: 7 TIFALSTVFGKSGVAVIRISGN---YALKALNHFHIKKEIKPRFATLVDLYDDSSQLI-D 62
Query: 89 EGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVL 148
G+ ++FP +G D + + + + V ++ I++ +S+V +
Sbjct: 63 NGIIIYFPAPNSF-------TGEDVI----ELQVHGSKAV-------IKIILEELSKVFV 104
Query: 149 DEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNN 208
KP F+ LR G+F
Sbjct: 105 -------MAKPGEFS----------------------------LRAFLNGKF-------- 121
Query: 209 KLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSED 268
DLTQ E + DLI AET++Q ++A+ Q+ G L++LYS WRQ ++ + +EAYIDF ED
Sbjct: 122 --DLTQIEGIADLIDAETKMQAKQAIKQISGELERLYSNWRQRLITIQSKIEAYIDFPED 179
Query: 269 EIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
E + L + ++V L I++H+ N+ G R+R G+ VI
Sbjct: 180 IWAEKSELEKINNEVQSLVRLIQEHLN-DNRRGERLREGLHIVIT 223
>sp|Q969Y2|GTPB3_HUMAN tRNA modification GTPase GTPBP3, mitochondrial OS=Homo sapiens
GN=GTPBP3 PE=2 SV=2
Length = 492
Score = 223 bits (568), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 134/338 (39%), Positives = 183/338 (54%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+CG++VIR SGP + +AL+ + D ++ R+ASLR + DP S LD L LWFP
Sbjct: 43 QGRCGIAVIRTSGPASGHALRILTAPRDLPLA--RHASLRLLSDPRSGEPLDRALVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E
Sbjct: 101 GPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+V L ++ H+ + + G R+RSG+ V+ N
Sbjct: 221 QADIEVRALQVALGAHLRDARR-GQRLRSGVHVVVT------------------GPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K S++ EP
Sbjct: 262 KSSLVNL---------LSRK--------PVSIVSPEP----------------------- 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPVLLSDTAGLREGVGP-VEQEG 318
Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+ + D +P R+ASLR + DP S LD
Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRD--LPLARHASLRLLSDPRSGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>sp|Q55C52|GTPB3_DICDI tRNA modification GTPase gtpbp3, mitochondrial OS=Dictyostelium
discoideum GN=gtpbp3 PE=3 SV=1
Length = 512
Score = 223 bits (567), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 131/341 (38%), Positives = 182/341 (53%), Gaps = 64/341 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPD---QKVSKPRYASLRNIVDPVSEVVLDEGLCLW 155
GK GV++IRVSGP ++ + D + K RYA+L +P + LD+G+ +W
Sbjct: 36 GKSGVAIIRVSGPQAETVIRKLIKKSDVDKNEEIKSRYATLSTFYNPKTNEQLDKGMFIW 95
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
FP PNSFTGED EF +HG AVI + A+ + G RP+E GEF+KRAF N K+DLTQ
Sbjct: 96 FPSPNSFTGEDVVEFHIHGGRAVIYETMEAIGLIEGTRPSEQGEFTKRAFENGKMDLTQV 155
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
E L DL+ A T Q++ AL
Sbjct: 156 EGLSDLLDASTSFQKKIALK---------------------------------------- 175
Query: 276 LNTVRSQVVQLHGSI-EKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
Q+ GSI E ++ L IR+ A +EA+IDF +D ++ I+
Sbjct: 176 ---------QMQGSISEFYLSLRKDL---IRAS-------AYMEAFIDFGDDAELDPEIV 216
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
+ R++++ + I++H+ K G R+R G IVG PN GKSSL+N L ++ SIV+
Sbjct: 217 DQSRNRIISIRDKIQQHLN-DGKRGERLRDGANIAIVGPPNAGKSSLINLLTNRKASIVS 275
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
I GTTRD++E LDI GYPVI+ DTAGLR +T+D IE EG
Sbjct: 276 PIAGTTRDIVEVILDIDGYPVIIGDTAGLRNSTNDQIEIEG 316
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPD---QKVPKPRYASLRNIVDPV 82
IK+TI+ LSSG GK GV++IRVSGP ++ + D + K RYA+L +P
Sbjct: 24 IKDTIYNLSSGVGKSGVAIIRVSGPQAETVIRKLIKKSDVDKNEEIKSRYATLSTFYNPK 83
Query: 83 SKVVLDEGLCLWFP 96
+ LD+G+ +WFP
Sbjct: 84 TNEQLDKGMFIWFP 97
>sp|Q73GH3|MNME_WOLPM tRNA modification GTPase MnmE OS=Wolbachia pipientis wMel GN=mnmE
PE=3 SV=1
Length = 508
Score = 222 bits (565), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 140/337 (41%), Positives = 192/337 (56%), Gaps = 66/337 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+VIR+SG ALK++ + +K KPR+A+L ++ D S+++ D G+ ++FP
Sbjct: 16 GKSGVAVIRISGN---YALKALNHFHIKKEIKPRFATLVDLYDDSSQLI-DNGIIIYFPA 71
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E QVHGS AVI IL L+K+ + A+PGEFS RAF N K DLTQ E +
Sbjct: 72 PNSFTGEDVIELQVHGSKAVIKIILEELSKVFVM--AKPGEFSLRAFLNGKFDLTQIEGI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET++Q ++A+ KQ+ E LE L S
Sbjct: 130 ADLIDAETKMQAKQAI-------KQISGE-----LERLYS-------------------N 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R +++ + IE AYIDF ED E + L +
Sbjct: 159 WRQRLITIQSKIE---------------------------AYIDFPEDIWAEKSELEKIN 191
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++V L I++H+ N+ G R+R G+ VI GEPNVGKS+L NFL ++ I+IV+ G
Sbjct: 192 NEVQSLVQLIQEHLN-DNRRGERLREGLHIVITGEPNVGKSTLFNFLAKRDIAIVSEYAG 250
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD++E H+DIGGYP+IL DTAG+R +SD IE EG
Sbjct: 251 TTRDILEAHIDIGGYPIILSDTAGIR-ESSDPIELEG 286
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 141/284 (49%), Gaps = 68/284 (23%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALS+ GK GV+VIR+SG ALK++ + +K KPR+A+L ++ D S+++ D
Sbjct: 7 TIFALSTVFGKSGVAVIRISGN---YALKALNHFHIKKEIKPRFATLVDLYDDSSQLI-D 62
Query: 89 EGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVL 148
G+ ++FP +G D + + +V + A ++ I++ +S+V +
Sbjct: 63 NGIIIYFPAPNS-------FTGEDVI----------ELQVHGSK-AVIKIILEELSKVFV 104
Query: 149 DEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNN 208
KP F+ LR G+F
Sbjct: 105 -------MAKPGEFS----------------------------LRAFLNGKF-------- 121
Query: 209 KLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSED 268
DLTQ E + DLI AET++Q ++A+ Q+ G L++LYS WRQ ++ + +EAYIDF ED
Sbjct: 122 --DLTQIEGIADLIDAETKMQAKQAIKQISGELERLYSNWRQRLITIQSKIEAYIDFPED 179
Query: 269 EIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
E + L + ++V L I++H+ N+ G R+R G+ VI
Sbjct: 180 IWAEKSELEKINNEVQSLVQLIQEHLN-DNRRGERLREGLHIVI 222
>sp|Q68VZ0|MNME_RICTY tRNA modification GTPase MnmE OS=Rickettsia typhi (strain ATCC
VR-144 / Wilmington) GN=mnmE PE=3 SV=1
Length = 445
Score = 219 bits (557), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 131/337 (38%), Positives = 179/337 (53%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGP +L L+ + D KPR + I+ P + ++D + ++F
Sbjct: 12 GKAGVAVFRISGPKSLEVLQLLTGRKD---FKPRLMYYQQIISPETNELIDNAMVVYFKL 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E HGS A+ ++ L + +R AE GEF+KRAF NNK DLT E +
Sbjct: 69 PNSFTGEDVVEIHTHGSKAISIMLINTLLNIDDIRLAEAGEFTKRAFLNNKFDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q
Sbjct: 129 ADLINAETIMQH------------------------------------------------ 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R V Q +G +E EL N R+ + +I L +EAY+DF DE I D+ILN V
Sbjct: 141 -RQAVRQANGGLE---ELYNNW----RNQLLKIIAL--LEAYLDFP-DEDIPDSILNDVN 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + I ++ N+ G + +G+K I+G PN GKSSL+NFL Q+ I+IV++I G
Sbjct: 190 NTHKNIVNEISNYLN-DNRRGELLNNGLKLAIIGPPNTGKSSLLNFLMQRNIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+R ++DIIE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIRAESTDIIEREG 285
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + D KPR + I+ P + ++D
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKPRLMYYQQIISPETNELID 59
Query: 89 EGLCLWF 95
+ ++F
Sbjct: 60 NAMVVYF 66
>sp|Q9ZCI1|MNME_RICPR tRNA modification GTPase MnmE OS=Rickettsia prowazekii (strain
Madrid E) GN=mnmE PE=3 SV=1
Length = 445
Score = 219 bits (557), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 132/337 (39%), Positives = 181/337 (53%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGP +L L+ + D KPR + I+ P + ++D + ++F
Sbjct: 12 GKAGVAVFRISGPKSLEVLQLLTGRKD---FKPRLMYYQQIIVPETNELIDNAMVVYFKL 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E HGS A+ ++ L + +R AE GEF+KRAF NNK DLT E +
Sbjct: 69 PNSFTGEDVVEIHTHGSKAISIMLINTLLNIADIRLAEAGEFTKRAFLNNKFDLTAAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET +Q
Sbjct: 129 ADLINAETIMQH------------------------------------------------ 140
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R V Q +G ++ EL NK R+ + +I L +EAYIDF DE I ++ILN V
Sbjct: 141 -RQAVRQANGGLK---ELYNKW----RNQLLKIISL--LEAYIDFP-DEDIPESILNDVN 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ + I ++ N+ G + +G+K I+G PN GKSSL+NFL Q+ I+IV++I G
Sbjct: 190 NTHKNIVNEISNYLN-DNRRGELLNNGLKLAIIGPPNTGKSSLLNFLMQRNIAIVSNIAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD+IE HLDIGGYP+IL DTAG+RT ++DIIE EG
Sbjct: 249 TTRDIIEGHLDIGGYPIILQDTAGIRTESTDIIEQEG 285
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + D KPR + I+ P + ++D
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKPRLMYYQQIIVPETNELID 59
Query: 89 EGLCLWF 95
+ ++F
Sbjct: 60 NAMVVYF 66
>sp|Q3YT72|MNME_EHRCJ tRNA modification GTPase MnmE OS=Ehrlichia canis (strain Jake)
GN=mnmE PE=3 SV=1
Length = 441
Score = 218 bits (554), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 129/337 (38%), Positives = 185/337 (54%), Gaps = 68/337 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+VIRVSG D A K+ + KPR A+ ++ + E++ DE + ++F
Sbjct: 14 GKSGVAVIRVSGKD---AAKAFLHFGISSSIKPRTATFAHLYNSKGEII-DEVIIVYFVA 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED EF HGS+AVI IL L K+ PA PGEFS RAF NNK+DLT+ EA+
Sbjct: 70 PSSFTGEDVVEFHTHGSLAVIKMILAELGKI--FVPAGPGEFSLRAFLNNKVDLTRAEAI 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI +ETE+Q ++A+ QM G L++LY W
Sbjct: 128 VDLINSETEMQAKQAIRQMSGALEKLYQSW------------------------------ 157
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R Q++ + L+++EAYIDF E+ + L +
Sbjct: 158 -RQQLIDI---------------------------LSNIEAYIDFPEE--VNSAALANIG 187
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L S+E H+ ++ G R+R GI IVGEPN GKS+L N L ++ I+IV+ G
Sbjct: 188 YLLNNLQESLECHLN-DDRKGERLRQGIYIAIVGEPNSGKSTLFNHLAKRDIAIVSEYAG 246
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD +E H+D+ GYP++++DTAG+R ++D+IE EG
Sbjct: 247 TTRDTLEAHIDVAGYPIVIIDTAGIR-DSADLIEQEG 282
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
I +TIFAL + GK GV+VIRVSG D A K+ + KPR A+ ++ + ++
Sbjct: 2 IMSTIFALCTPWGKSGVAVIRVSGKD---AAKAFLHFGISSSIKPRTATFAHLYNSKGEI 58
Query: 86 VLDEGLCLWF 95
+ DE + ++F
Sbjct: 59 I-DEVIIVYF 67
>sp|Q4UK70|MNME_RICFE tRNA modification GTPase MnmE OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=mnmE PE=3 SV=1
Length = 480
Score = 216 bits (551), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/369 (36%), Positives = 192/369 (52%), Gaps = 92/369 (24%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPD--------QKVSKPR-------YASLRNIVDPV 143
GK GV+V R+SGP +L L+ + D Q+++ P+ +A V+P+
Sbjct: 12 GKAGVAVFRISGPKSLEVLQLLTGRADFKPRIMYYQQITVPKTIVNSASFAYKEPRVEPI 71
Query: 144 ------SEVV-----------LDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGAL 186
S++V +D + ++F PNSFTGED E HGS A+ ++ AL
Sbjct: 72 TNRRATSDIVSEGGSIDYKELIDNAMVVYFKSPNSFTGEDVVEIHTHGSKAISIMLINAL 131
Query: 187 TKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYS 246
+ +R AE GEF+KRAF NNK DLT E + DLI AET +Q ++A+ Q G L++
Sbjct: 132 LNIADIRLAEAGEFTKRAFLNNKFDLTAAEGIADLINAETIMQHRQAIRQASGGLEE--- 188
Query: 247 EWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRS 306
+ N R+Q++++
Sbjct: 189 ----------------------------LYNNWRTQLLKI-------------------- 200
Query: 307 GIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGI 366
++ +EAYIDF DE I D++LN V + L I ++ N+ G + SG+
Sbjct: 201 -------ISLLEAYIDFP-DEDIPDSVLNDVNNTHKNLVNEISNYLN-DNRRGELLNSGL 251
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426
K I+G PNVGKSSL+NFL Q+ I+IV++I GTTRD+IE HLDIGGYP+IL DTAG+R
Sbjct: 252 KLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIREE 311
Query: 427 TSDIIETEG 435
+SDIIE EG
Sbjct: 312 SSDIIEQEG 320
Score = 158 bits (400), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 117/346 (33%), Positives = 176/346 (50%), Gaps = 52/346 (15%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFA SS GK GV+V R+SGP +L L+ + D KPR
Sbjct: 3 TIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRAD---FKPR----------------- 42
Query: 89 EGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSE--- 145
+++ +++ P T+ S A Y + +V + R D VSE
Sbjct: 43 ---IMYYQ----------QITVPKTIVNSASFA-YKEPRVEP--ITNRRATSDIVSEGGS 86
Query: 146 ----VVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFS 201
++D + ++F PNSFTGED E HGS A+ ++ AL + +R AE GEF+
Sbjct: 87 IDYKELIDNAMVVYFKSPNSFTGEDVVEIHTHGSKAISIMLINALLNIADIRLAEAGEFT 146
Query: 202 KRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEA 261
KRAF NNK DLT E + DLI AET +Q ++A+ Q G L++LY+ WR +L+ ++ +EA
Sbjct: 147 KRAFLNNKFDLTAAEGIADLINAETIMQHRQAIRQASGGLEELYNNWRTQLLKIISLLEA 206
Query: 262 YIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK-SVICLASV--E 318
YIDF DE I D++LN V + L I ++ N+ G + SG+K ++I +V
Sbjct: 207 YIDFP-DEDIPDSVLNDVNNTHKNLVNEISNYLN-DNRRGELLNSGLKLAIIGPPNVGKS 264
Query: 319 AYIDF--SEDEIIEDNILNTVRSQVVQLHGSIEKH-IELSNKCGVR 361
+ ++F D I NI T R +++ H I + I L + G+R
Sbjct: 265 SLLNFLMQRDIAIVSNIAGTTR-DIIEGHLDIGGYPIILQDTAGIR 309
>sp|Q5HCD7|MNME_EHRRW tRNA modification GTPase MnmE OS=Ehrlichia ruminantium (strain
Welgevonden) GN=mnmE PE=3 SV=1
Length = 439
Score = 216 bits (550), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 130/337 (38%), Positives = 185/337 (54%), Gaps = 68/337 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+VIRVSG D A+K+ + KPR A+ + + EV+ DE + ++F
Sbjct: 12 GKSGVAVIRVSGQD---AVKTFMHFKISNAIKPRVATFTPLYNAAHEVI-DEVIVVYFSA 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E HGSIAVI IL L K+ PA PGEFS RAF NNK+DLT+ EA+
Sbjct: 68 PNSFTGEDVVELHTHGSIAVIRMILCELGKI--FIPAGPGEFSLRAFLNNKVDLTRAEAI 125
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AETE+Q ++A+ QM G+L++LY W
Sbjct: 126 VDLINAETEMQAKQAIRQMSGSLEKLYQSW------------------------------ 155
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R Q++ + L+++EAYIDF E+ + + + +
Sbjct: 156 -RQQLIDV---------------------------LSNMEAYIDFPEE--VTSSAVENIS 185
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ S+E H+ K G +R GI I+GEPN GKS+L N L ++ I+IV+ G
Sbjct: 186 FLLDKIKESLENHLNDGRK-GEILRQGIYVAILGEPNSGKSTLFNHLAKRDIAIVSEYAG 244
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDV+E H+DI GYP++++DTAG+R ++D +E EG
Sbjct: 245 TTRDVLETHIDIAGYPIVIIDTAGIR-DSNDPVEQEG 280
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFAL + GK GV+VIRVSG D A+K+ + KPR A+ + + +V+
Sbjct: 2 STIFALCTPWGKSGVAVIRVSGQD---AVKTFMHFKISNAIKPRVATFTPLYNAAHEVI- 57
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSGPDTLNALKSMAC 122
DE + ++F + G V+ + ++ ++ + C
Sbjct: 58 DEVIVVYFSAPNSFTGEDVVELHTHGSIAVIRMILC 93
>sp|Q5P9B1|MNME_ANAMM tRNA modification GTPase MnmE OS=Anaplasma marginale (strain St.
Maries) GN=mnmE PE=3 SV=1
Length = 443
Score = 216 bits (549), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 129/343 (37%), Positives = 191/343 (55%), Gaps = 68/343 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+VIRVSG D ALKSM ++ + R A+ + + D + + D+ + L+FP
Sbjct: 15 GKSGVAVIRVSGHD---ALKSMQLLGVKEPVRSRVATCKTLYDKKRQPI-DQAVVLYFPG 70
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E QVHGS+AVI + L + R AEPGEFS RAF N K+DLT+ E +
Sbjct: 71 PGSFTGEDVVELQVHGSLAVIRLLFEELQTV--FRIAEPGEFSLRAFLNGKIDLTRAEGI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL+ +ETE Q L+Q +++ + + +
Sbjct: 129 ADLVNSETEAQ-----------LRQAFAQSSGFL--------------------ERLYEE 157
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
RS +V + L+ +EAYIDF +D + IL +V
Sbjct: 158 WRSSLVDI---------------------------LSDLEAYIDFPDD--VSPQILRSVH 188
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+V +LH S+E+H++ ++ G R+R G++ I+G+PNVGKS+L N L ++ ++IV+ PG
Sbjct: 189 DRVKELHNSLERHLDDGHR-GERLRHGMRVAILGKPNVGKSTLFNHLARRDMAIVSEYPG 247
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKN 441
TTRDV+E H+DIGGYP I++DTAG+R +T D +E EG + K+
Sbjct: 248 TTRDVLEAHVDIGGYPFIVVDTAGIREST-DFVEREGIMRAKS 289
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 7/129 (5%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFALS+ GK GV+VIRVSG D ALKSM ++ + R A+ + + D + +
Sbjct: 5 DTIFALSTPMGKSGVAVIRVSGHD---ALKSMQLLGVKEPVRSRVATCKTLYDK-KRQPI 60
Query: 88 DEGLCLWFPRHGK-CGVSVIRVSGPDTLNALKSM--ACYPDQKVSKPRYASLRNIVDPVS 144
D+ + L+FP G G V+ + +L ++ + ++++P SLR ++
Sbjct: 61 DQAVVLYFPGPGSFTGEDVVELQVHGSLAVIRLLFEELQTVFRIAEPGEFSLRAFLNGKI 120
Query: 145 EVVLDEGLC 153
++ EG+
Sbjct: 121 DLTRAEGIA 129
>sp|B0T6E0|MNME_CAUSK tRNA modification GTPase MnmE OS=Caulobacter sp. (strain K31)
GN=mnmE PE=3 SV=1
Length = 447
Score = 216 bits (549), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 132/329 (40%), Positives = 178/329 (54%), Gaps = 68/329 (20%)
Query: 107 RVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGED 166
R+SG + + ++ +A + KPR A LR + V LD+ L LWF P S+TGED
Sbjct: 21 RISGARSADIVRGLAG----DLPKPRRAVLRQLTR--DGVALDDALVLWFQGPASYTGED 74
Query: 167 CCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAET 226
EF VHG AV+ A+L AL GLR AEPGEF++RAF N KLDLTQ E + DLI AET
Sbjct: 75 AAEFHVHGGRAVVEAVLEALAA-EGLRLAEPGEFTRRAFENGKLDLTQAEGVADLIDAET 133
Query: 227 ELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQL 286
E QR++AL Q+ G L Q Y WR L++++LA +EA +DF ++E+ ED
Sbjct: 134 EAQRRQALGQLGGALSQRYEAWRGLLVQALAMLEAAVDFPDEELPED------------- 180
Query: 287 HGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHG 346
R R G++ ++EA I + +++ R + V
Sbjct: 181 -------------VAARARPGLE------ALEAEIGAA--------LVDASRGRRV---- 209
Query: 347 SIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEK 406
+ G RI +VG PN GKS+L+N L ++ +IVTS PGTTRD+IE
Sbjct: 210 ----------RDGYRI------ALVGAPNAGKSTLLNALVERDAAIVTSTPGTTRDIIEV 253
Query: 407 HLDIGGYPVILLDTAGLRTTTSDIIETEG 435
L +GGY +L DTAGLR T D IE EG
Sbjct: 254 PLTLGGYKTLLADTAGLR-KTEDTIEAEG 281
>sp|B0UJI9|MNME_METS4 tRNA modification GTPase MnmE OS=Methylobacterium sp. (strain 4-46)
GN=mnmE PE=3 SV=1
Length = 437
Score = 215 bits (548), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 126/338 (37%), Positives = 175/338 (51%), Gaps = 63/338 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ V+VIR+SGP + L ++ +P PR SLR + DP + VLD L +W P
Sbjct: 13 GRAAVAVIRISGPGAASCLTALTGHPP---PLPRRLSLRQLRDPGTGEVLDRALVVWLPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FTGED E +HG AV A+L L +LPGL PAEPG F++RAF N ++DLT E L
Sbjct: 70 PATFTGEDSAELHLHGGAAVRAAVLRVLGRLPGLAPAEPGAFTRRAFLNGRMDLTAVEGL 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AETE QR++A+ Q+ G L +L VEA+ D +L
Sbjct: 130 ADLIDAETEAQRRQAMRQLDGALGRL--------------VEAW---------RDTLLG- 165
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFS-EDEIIEDNILNTV 337
LA EA +DFS E ++ E + +
Sbjct: 166 ----------------------------------VLAGAEAALDFSDEGDVDESALSASG 191
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+ ++ +I + + G R+R G V+ G PN GKS+L+N L +++ +IV+ IP
Sbjct: 192 LAAAARVRDAILAALA-EGRRGERLREGFVVVLAGPPNAGKSTLLNALARREAAIVSPIP 250
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRD IE D+ G PV+L+DTAGLR +D IE EG
Sbjct: 251 GTTRDAIEVRCDLDGLPVLLVDTAGLRDEGADPIEAEG 288
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 109/248 (43%), Gaps = 64/248 (25%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ +TIFA +SG G+ V+VIR+SGP + L ++ +P P PR SLR + DP +
Sbjct: 1 MTDTIFAPASGFGRAAVAVIRISGPGAASCLTALTGHPP---PLPRRLSLRQLRDPGTGE 57
Query: 86 VLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSE 145
VLD L +W P GP T S + + R A LR
Sbjct: 58 VLDRALVVWLP-------------GPATFTGEDSAELHLHGGAAV-RAAVLR-------- 95
Query: 146 VVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAF 205
VL L +P +FT +RAF
Sbjct: 96 -VLGRLPGLAPAEPGAFT--------------------------------------RRAF 116
Query: 206 FNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDF 265
N ++DLT E L DLI AETE QR++A+ Q+ G L +L WR +L LA EA +DF
Sbjct: 117 LNGRMDLTAVEGLADLIDAETEAQRRQAMRQLDGALGRLVEAWRDTLLGVLAGAEAALDF 176
Query: 266 SEDEIIED 273
S++ +++
Sbjct: 177 SDEGDVDE 184
>sp|Q5FF19|MNME_EHRRG tRNA modification GTPase MnmE OS=Ehrlichia ruminantium (strain
Gardel) GN=mnmE PE=3 SV=1
Length = 439
Score = 215 bits (547), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 130/337 (38%), Positives = 184/337 (54%), Gaps = 68/337 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+VIRVSG D A+K+ + KPR A+ + + EV+ DE + ++F
Sbjct: 12 GKSGVAVIRVSGQD---AVKTFMHFKISNAIKPRVATFTPLYNAAHEVI-DEVIVVYFSA 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E HGSIAVI IL L K+ PA PGEFS RAF NNK+DLT+ EA+
Sbjct: 68 PNSFTGEDVVELHTHGSIAVIRMILCELGKI--FIPAGPGEFSLRAFLNNKVDLTRAEAI 125
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AETE+Q ++A+ QM G+L++LY W
Sbjct: 126 VDLINAETEMQAKQAIRQMSGSLEKLYQSW------------------------------ 155
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R Q++ + L+++EAYIDF E+ + + +
Sbjct: 156 -RQQLIDV---------------------------LSNMEAYIDFPEE--VTSFAVENIS 185
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ ++ S+E H+ K G +R GI I+GEPN GKS+L N L ++ I+IV+ G
Sbjct: 186 FLLDKIKESLENHLNDGRK-GEILRQGIYVAILGEPNSGKSTLFNHLAKRDIAIVSEYAG 244
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDV+E H+DI GYP++++DTAG+R ++D +E EG
Sbjct: 245 TTRDVLETHIDIAGYPIVIIDTAGIR-DSNDPVEQEG 280
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 31/142 (21%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFAL + GK GV+VIRVSG D A+K+ + KPR A+ + + +V+
Sbjct: 2 STIFALCTPWGKSGVAVIRVSGQD---AVKTFMHFKISNAIKPRVATFTPLYNAAHEVI- 57
Query: 88 DEGLCLWFPR------------HGKCGVSVIRV-----------SGPDTLNALKSMACYP 124
DE + ++F H ++VIR+ +GP S+ +
Sbjct: 58 DEVIVVYFSAPNSFTGEDVVELHTHGSIAVIRMILCELGKIFIPAGPGEF----SLRAFL 113
Query: 125 DQKVSKPRYASLRNIVDPVSEV 146
+ KV R ++ ++++ +E+
Sbjct: 114 NNKVDLTRAEAIVDLINAETEM 135
>sp|A7HSK9|MNME_PARL1 tRNA modification GTPase MnmE OS=Parvibaculum lavamentivorans
(strain DS-1 / DSM 13023 / NCIMB 13966) GN=mnmE PE=3
SV=1
Length = 438
Score = 214 bits (546), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 131/337 (38%), Positives = 179/337 (53%), Gaps = 64/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G++V+R+SGP AL+++ +K PR A L DP + LD GL ++FP
Sbjct: 12 GRAGIAVLRLSGPHARAALRALTG---RKAGAPREAMLCRFRDPETHAALDRGLAIFFPA 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E +HG AVI A+L AL +LPGLR A+PGEF++RAF N KLDLT+ E L
Sbjct: 69 PASFTGEDVVELHIHGGRAVIAAMLRALGQLPGLRAAQPGEFTRRAFENGKLDLTEVEGL 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AETE QR +AL +Q+ QL EA+
Sbjct: 129 ADLIDAETEAQRAQAL-------RQMEGALGQLY-------EAW---------------- 158
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R+++++ LA EA IDF ++E+ D ++ +
Sbjct: 159 -RARLMR---------------------------ALAYAEAEIDFPDEEVPGD-LIAKLG 189
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L I H++ + G ++R G++ IVG PN GKSSL+N L ++ +IV+ G
Sbjct: 190 PDIEALETEIAAHLD-DGRRGEQLRDGVEVAIVGPPNAGKSSLLNRLAGREAAIVSDEAG 248
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDV+E LDIGG PV L DTAGLR IE EG
Sbjct: 249 TTRDVLEVRLDIGGVPVTLADTAGLREAAG-AIEQEG 284
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TI+ALS+ G+ G++V+R+SGP AL+++ +K PR A L DP + L
Sbjct: 2 ETIYALSTAAGRAGIAVLRLSGPHARAALRALTG---RKAGAPREAMLCRFRDPETHAAL 58
Query: 88 DEGLCLWFP 96
D GL ++FP
Sbjct: 59 DRGLAIFFP 67
>sp|Q2WBH0|MNME_MAGSA tRNA modification GTPase MnmE OS=Magnetospirillum magneticum
(strain AMB-1 / ATCC 700264) GN=mnmE PE=3 SV=2
Length = 441
Score = 212 bits (540), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 134/337 (39%), Positives = 180/337 (53%), Gaps = 66/337 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ G++V R+SG + AL ++ P + +PR A + D EV LD+GL LWFP
Sbjct: 13 GRAGIAVWRLSGEGSGTALSALTGKP---LPEPRRARRVRLRDGAGEV-LDDGLVLWFPA 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E +HG AV A+ L +L GLRPAEPGEFS+RAF N KLDLT+ EA+
Sbjct: 69 PHSFTGEDVAELHLHGGRAVAAALTARLGEL-GLRPAEPGEFSRRAFLNGKLDLTRAEAI 127
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL+ AET QR++AL
Sbjct: 128 ADLVDAETAAQRRQALR------------------------------------------- 144
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
QL G + +E VR +A +EA IDF+ DE I D +L
Sbjct: 145 ------QLDGGLAGLVEGWRSALVR---------AMAHLEAVIDFA-DEDIPDTLLEQSV 188
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+V L +E H++ + G R+R GI I+G PN GKSSL+N L ++ +IV++ G
Sbjct: 189 GEVRSLRREMEVHLD-ERRNGERLRDGIHITILGAPNAGKSSLLNRLAGREAAIVSAQAG 247
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE HLD+GG+PVI+ DTAGLR + + IE+EG
Sbjct: 248 TTRDVIEVHLDLGGWPVIVADTAGLRDSACE-IESEG 283
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ TI+AL+S G+ G++V R+SG + AL ++ P +P+PR A + D +
Sbjct: 1 MSETIYALASAAGRAGIAVWRLSGEGSGTALSALTGKP---LPEPRRARRVRLRDGAGE- 56
Query: 86 VLDEGLCLWFP 96
VLD+GL LWFP
Sbjct: 57 VLDDGLVLWFP 67
>sp|Q923K4|GTPB3_MOUSE tRNA modification GTPase GTPBP3, mitochondrial OS=Mus musculus
GN=Gtpbp3 PE=2 SV=1
Length = 492
Score = 211 bits (536), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 131/338 (38%), Positives = 177/338 (52%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+C ++VIR SGP + AL+S+ Q+ R A LR + P S LD L LWFP
Sbjct: 43 QGRCAIAVIRTSGPASGLALRSLTAL--QEPPPARRACLRLLRHPCSGEPLDRSLVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF + KL LT+ E
Sbjct: 101 GPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLSLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI+AETE QR++AL Q+ G L QL W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIRAETEAQRRQALRQLDGELSQLCQGWAKTLTKALAYVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
+V L ++ H+ + + G R+ SG V+ N
Sbjct: 221 QADREVRALEVALGSHLRDARR-GQRLLSGANVVV------------------TGPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K S++ EP
Sbjct: 262 KSSLVNL---------LSQK--------PVSIVSPEP----------------------- 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+E +D+ G+PV+L DTAGLR +E EG
Sbjct: 282 GTTRDVLETPVDLAGFPVLLSDTAGLREGVG-AVEQEG 318
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Query: 20 RCS----HLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASL 75
RCS L +TIFALSSG G+C ++VIR SGP + AL+S+ Q+ P R A L
Sbjct: 22 RCSTSAESLVPSSTIFALSSGQGRCAIAVIRTSGPASGLALRSLTAL--QEPPPARRACL 79
Query: 76 RNIVDPVSKVVLDEGLCLWFP 96
R + P S LD L LWFP
Sbjct: 80 RLLRHPCSGEPLDRSLVLWFP 100
>sp|Q5PQQ1|GTPB3_RAT tRNA modification GTPase GTPBP3, mitochondrial OS=Rattus norvegicus
GN=Gtpbp3 PE=2 SV=1
Length = 492
Score = 210 bits (535), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 129/338 (38%), Positives = 177/338 (52%), Gaps = 62/338 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+C ++VIR SGP + AL+S+ ++ R A LR + P S LD L LWFP
Sbjct: 43 QGRCAIAVIRTSGPASGLALRSLTAL--REPPPARSACLRLLRHPCSGEPLDRSLVLWFP 100
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC E VHG AV++ +L AL +PGLRPA+ GEF++RAF + KL LT+ E
Sbjct: 101 GPQSFTGEDCMELHVHGGPAVVSGVLQALGSVPGLRPAKAGEFTRRAFAHGKLSLTEVEG 160
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q+ G L QL W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 161 LADLIHAETEAQRRQALRQLDGELSQLCQGWAKTLTKALAHVEAYIDFGEDDNLEEGVLE 220
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
V V L ++ H+ + + G R+RSG V+ N
Sbjct: 221 QVDRDVRALEVALSSHLRDARR-GQRLRSGANVVVA------------------GPPNAG 261
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+S +V L LS K S++ EP
Sbjct: 262 KSSLVNL---------LSQK--------PVSIVSPEP----------------------- 281
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRD++E +D+ G+PV+L DTAGLR + +E EG
Sbjct: 282 GTTRDILETPVDLAGFPVLLSDTAGLR-EGAGAVEQEG 318
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Query: 20 RCS----HLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASL 75
RCS L +TIFALSSG G+C ++VIR SGP + AL+S+ ++ P R A L
Sbjct: 22 RCSTGAESLVPGSTIFALSSGQGRCAIAVIRTSGPASGLALRSLTAL--REPPPARSACL 79
Query: 76 RNIVDPVSKVVLDEGLCLWFP 96
R + P S LD L LWFP
Sbjct: 80 RLLRHPCSGEPLDRSLVLWFP 100
>sp|Q2GD53|MNME_NEOSM tRNA modification GTPase MnmE OS=Neorickettsia sennetsu (strain
Miyayama) GN=mnmE PE=3 SV=1
Length = 550
Score = 209 bits (533), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 124/337 (36%), Positives = 184/337 (54%), Gaps = 67/337 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGPD L AL+ + D K +PR+ + D ++++DE L ++F
Sbjct: 12 GKSGVAVFRISGPDALRALELLGL--DIKQPRPRFVYFARLFD--EQLLIDEVLVVYFAS 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E HGSIAV+ I L+ L +PAEPGEF++RA NN++DLT+ E +
Sbjct: 68 PASFTGEDVVELHSHGSIAVLRYISEKLSTL--FKPAEPGEFTRRAVLNNRMDLTKAEGI 125
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I +ET+ Q ++A + G L + Y N+
Sbjct: 126 IDIINSETQEQLKQASRHLSGKLAEEY-------------------------------NS 154
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+R +++++ L+ +EAYIDF ++EI E +L ++
Sbjct: 155 LRDKIIKV---------------------------LSYLEAYIDFPDEEIPE-TVLAEIQ 186
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+V + I +++ K G +IR G VIVG+PNVGKS+L N+L ++ ++IVT IPG
Sbjct: 187 QSIVAIQCDISRYLA-DGKVGEKIREGFSVVIVGKPNVGKSTLFNYLAKRDLAIVTDIPG 245
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD++E LD GYPVIL DTAG++ T D IE G
Sbjct: 246 TTRDILEVRLDCHGYPVILSDTAGIQETC-DAIEKMG 281
Score = 105 bits (262), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 131/286 (45%), Gaps = 69/286 (24%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI+ALS+ GK GV+V R+SGPD L AL+ + D K P+PR+ + D ++++
Sbjct: 2 STIYALSTVFGKSGVAVFRISGPDALRALELLGL--DIKQPRPRFVYFARLFD--EQLLI 57
Query: 88 DEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVV 147
DE L ++F + P + + + ++ RY S
Sbjct: 58 DEVLVVYF-------------ASPASFTGEDVVELHSHGSIAVLRYIS------------ 92
Query: 148 LDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFN 207
E L F KP PG EF++RA N
Sbjct: 93 --EKLSTLF-KPAE----------------------------PG-------EFTRRAVLN 114
Query: 208 NKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSE 267
N++DLT+ E + D+I +ET+ Q ++A + G L + Y+ R I++ L+ +EAYIDF +
Sbjct: 115 NRMDLTKAEGIIDIINSETQEQLKQASRHLSGKLAEEYNSLRDKIIKVLSYLEAYIDFPD 174
Query: 268 DEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
+EI E +L ++ +V + I +++ K G +IR G VI
Sbjct: 175 EEIPE-TVLAEIQQSIVAIQCDISRYLA-DGKVGEKIREGFSVVIV 218
>sp|Q21CM0|MNME_RHOPB tRNA modification GTPase MnmE OS=Rhodopseudomonas palustris (strain
BisB18) GN=mnmE PE=3 SV=1
Length = 449
Score = 207 bits (528), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/335 (36%), Positives = 181/335 (54%), Gaps = 65/335 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
++++RVSGP+ L+ +A ++ PR A +R ++ S +D+ + LWFP P
Sbjct: 18 AALAIVRVSGPEAAIVLERIAG----RLPPPRQA-MRALLHDASAQPIDDAIVLWFPAPR 72
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
S TGED EF +HG AV++A++ A+ LR AEPGEF++RAF N KLDLT+ E L D
Sbjct: 73 SATGEDVAEFHIHGGRAVLSAVIAAIGTNENLRAAEPGEFTRRAFENGKLDLTEAEGLDD 132
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI A+TE QR++AL Q++G L +WR I+ + A VEA IDF+++ + D +
Sbjct: 133 LIHADTERQRRQALRQLQGLLGDRARDWRGEIIAASALVEAAIDFADEGDVPDEL----- 187
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
+A +A I+ DE IED + RS+
Sbjct: 188 ---------------------------------IAPAKAKIEILLDE-IEDVLAQEGRSE 213
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
++R G+ I G PNVGKS+LMN L +++++IV+ GTT
Sbjct: 214 --------------------KLRDGLVVAITGPPNVGKSTLMNQLARREVAIVSPHAGTT 253
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
RD+IE HLD+ GYPV ++DTAG+R D +E EG
Sbjct: 254 RDIIEVHLDLDGYPVTVIDTAGIREAI-DPVEQEG 287
>sp|Q4FNR7|MNME_PELUB tRNA modification GTPase MnmE OS=Pelagibacter ubique (strain
HTCC1062) GN=mnmE PE=3 SV=1
Length = 443
Score = 205 bits (521), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 123/334 (36%), Positives = 186/334 (55%), Gaps = 67/334 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSM--ACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWF 156
G G++++RVSG DT +K + A P+ R A+LR I + ++DEG+ LWF
Sbjct: 11 GISGIAIVRVSGKDTKKVIKLLTNAALPE-----TRVATLRKINKINTSELIDEGIILWF 65
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P P S+TGED EF +HGS AVI+A+ +++K+ R A+PGEF+K AF N K++L + E
Sbjct: 66 PGPESYTGEDMAEFHIHGSKAVIDALHHSISKIKNCRLADPGEFTKLAFQNGKINLLKAE 125
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
++ DLI AETE+QRQ+A+ M G S D+
Sbjct: 126 SIADLISAETEIQRQQAIKIMNGK-------------------------SADK------F 154
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
N +R +++++ L+ VEA IDF ++++ ED IL
Sbjct: 155 NNLREKLLKI---------------------------LSHVEAKIDFPDEDLPED-ILKN 186
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
++ ++ +I+K ++ K G RIR G K I+G N GKSSL+N L + ++IV+ I
Sbjct: 187 IKKISNEVILNIKKILD-DQKVGERIREGFKIAIIGPTNAGKSSLLNHLSNRDVAIVSEI 245
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRDVIE HL+I GYPV++ DTAG+R + ++I
Sbjct: 246 AGTTRDVIETHLNIDGYPVVVSDTAGIRDSKNEI 279
Score = 119 bits (297), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 141/285 (49%), Gaps = 66/285 (23%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TI+ALS+G G G++++RVSG DT +K + + +P+ R A+LR I + ++D
Sbjct: 2 TIYALSTGPGISGIAIVRVSGKDTKKVIKLLT---NAALPETRVATLRKINKINTSELID 58
Query: 89 EGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVL 148
EG+ LWFP GP++ Y + +++ + ++D
Sbjct: 59 EGIILWFP-------------GPES---------YTGEDMAEFHIHGSKAVIDA------ 90
Query: 149 DEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNN 208
+H SI +K+ R A+PGEF+K AF N
Sbjct: 91 -----------------------LHHSI----------SKIKNCRLADPGEFTKLAFQNG 117
Query: 209 KLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSED 268
K++L + E++ DLI AETE+QRQ+A+ M G ++ R+ +L+ L+ VEA IDF ++
Sbjct: 118 KINLLKAESIADLISAETEIQRQQAIKIMNGKSADKFNNLREKLLKILSHVEAKIDFPDE 177
Query: 269 EIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC 313
++ ED IL ++ ++ +I+K ++ K G RIR G K I
Sbjct: 178 DLPED-ILKNIKKISNEVILNIKKILD-DQKVGERIREGFKIAII 220
>sp|P32559|MSS1_YEAST tRNA modification GTPase MSS1, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MSS1 PE=1
SV=2
Length = 526
Score = 204 bits (520), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 136/364 (37%), Positives = 182/364 (50%), Gaps = 80/364 (21%)
Query: 92 CLWFPRHGKCGVSVIRVSGPDT---LNALKSMACYPDQKVSKPRYASLRNIVDPVS---- 144
L P + +++IR+SG N L + P R A LRNI P S
Sbjct: 41 ALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVP-----PIRKAILRNIYSPSSCSVK 95
Query: 145 -------EVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL------PG 191
+++LD L L+F P SFTGED E VHG AV+N+IL A+ L
Sbjct: 96 PHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGKD 155
Query: 192 LRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQL 251
+R A PG+FS+RAF N K DLTQ E + DLI +ETE QR+ AL G+ K L+ WR+
Sbjct: 156 IRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRET 215
Query: 252 ILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSV 311
I+E++A + A IDF++D SQ +Q I ++E K++
Sbjct: 216 IIENMAQLTAIIDFADDN-----------SQEIQNTDEIFHNVE-------------KNI 251
Query: 312 ICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIV 371
ICL R Q+V +EK L N GIK V++
Sbjct: 252 ICL-----------------------RDQIVTFMQKVEKSTILQN--------GIKLVLL 280
Query: 372 GEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDII 431
G PNVGKSSL+N L ISIV+ IPGTTRD I+ +++ GY VI+ DTAG+R +SD I
Sbjct: 281 GAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIREKSSDKI 340
Query: 432 ETEG 435
E G
Sbjct: 341 EMLG 344
>sp|B2IJQ3|MNME_BEII9 tRNA modification GTPase MnmE OS=Beijerinckia indica subsp. indica
(strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=mnmE PE=3
SV=1
Length = 451
Score = 204 bits (519), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/333 (35%), Positives = 170/333 (51%), Gaps = 63/333 (18%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ V+++RVSGP L ++A Y +PR A+L + DP + LDE L LWFP
Sbjct: 28 QGRSAVAIVRVSGPKAGFLLGALAGY----CPEPRRATLAILHDPENGEALDEALVLWFP 83
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGEDC EF VHG AV+ +L AL + +RPAEPGEF++RA N KLDL + E
Sbjct: 84 GPKSFTGEDCAEFHVHGGRAVMAGLLAALGRFEQVRPAEPGEFTRRALLNGKLDLAEVEG 143
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L D+I+AETE W++
Sbjct: 144 LADMIEAETE--------------------WQR--------------------------- 156
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
R + Q+ G++ + E+ R + + LA EA IDFS++ + V
Sbjct: 157 --RQALRQMRGALSRQAEM-------WRQALLEALSLA--EAEIDFSDEADVPPETSRRV 205
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+ + + + + + G RIR G+ VI+G PN GKS+L+N L +++++IV+ I
Sbjct: 206 AALIEPVLADLRAELG-QARAGERIREGLSIVIMGPPNAGKSTLLNALARREVAIVSEIA 264
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
GTTRD+IE HLD+ G V+L DTAGLR I
Sbjct: 265 GTTRDLIEVHLDLKGCAVVLTDTAGLRDNADKI 297
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 22 SHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDP 81
SH A TIFA +SG G+ V+++RVSGP L ++A Y P+PR A+L + DP
Sbjct: 13 SHAATLETIFAPASGQGRSAVAIVRVSGPKAGFLLGALAGY----CPEPRRATLAILHDP 68
Query: 82 VSKVVLDEGLCLWFP 96
+ LDE L LWFP
Sbjct: 69 ENGEALDEALVLWFP 83
>sp|Q2GI42|MNME_EHRCR tRNA modification GTPase MnmE OS=Ehrlichia chaffeensis (strain
Arkansas) GN=mnmE PE=3 SV=1
Length = 439
Score = 199 bits (506), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 179/337 (53%), Gaps = 68/337 (20%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV+VIR+SG D A K+ + KPR A+ + D EV+ DE + ++F
Sbjct: 12 GRSGVAVIRISGED---AAKAFVHFGINSSIKPRTATFTPLYDKDGEVI-DEAIVVYFVA 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED EF HGS AVI IL L K+ PA PGEFS RAF NNK+DLT+ EA+
Sbjct: 68 PNSFTGEDVVEFHTHGSFAVIKMILAELGKI--FVPAGPGEFSLRAFLNNKVDLTRAEAI 125
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI +ETE+ Q K ++Q+ +LE L
Sbjct: 126 VDLINSETEM-------QAKQAIRQMSG-----VLEKL-------------------YQN 154
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R Q++ + L+++EAYIDF E+ + + + +
Sbjct: 155 WRQQLIDI---------------------------LSNIEAYIDFPEE--VNSSAIANID 185
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L S+E H+ ++ G R+R GI I+GEPN GKS+L N L ++ I+IV+ G
Sbjct: 186 YLLNNLQKSLESHLN-DDRRGERLRQGIYVTILGEPNSGKSTLFNHLAKRDIAIVSEYAG 244
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD +E H+D+ GYP+I++DTAG+R +T D +E EG
Sbjct: 245 TTRDPLEAHIDVAGYPIIIIDTAGIREST-DPVEQEG 280
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFAL + G+ GV+VIR+SG D A K+ + KPR A+ + D +V+ D
Sbjct: 3 TIFALCTPWGRSGVAVIRISGED---AAKAFVHFGINSSIKPRTATFTPLYDKDGEVI-D 58
Query: 89 EGLCLWF 95
E + ++F
Sbjct: 59 EAIVVYF 65
>sp|Q2GC37|MNME_NOVAD tRNA modification GTPase MnmE OS=Novosphingobium aromaticivorans
(strain DSM 12444) GN=mnmE PE=3 SV=1
Length = 437
Score = 197 bits (502), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 168/333 (50%), Gaps = 58/333 (17%)
Query: 101 CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
G+ VIR+SGP AL S+A ++ PR A+L + DP LD + LW P P
Sbjct: 15 AGIGVIRISGPGAGAALSSLA----GRLPSPRRATLATLADPRDGTHLDRTMVLWLPGPA 70
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
+ TGEDC E +HG AVI A+ AL+ LPGLR A PGEF++RAF N ++DL + E L D
Sbjct: 71 TATGEDCAELHLHGGRAVIAAVEAALSSLPGLRRARPGEFTRRAFANGRIDLAEAEGLAD 130
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFS-EDEIIEDNILNTV 279
L+ AETELQR+ AL +G L + EWR +L+ A +EA +DFS ED++ + T
Sbjct: 131 LLSAETELQRRTALAMAEGALSREVDEWRTTLLQISARLEAALDFSDEDDVGAGD--GTQ 188
Query: 280 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRS 339
R+ ++ H + C S+ C S+ ++D E +++
Sbjct: 189 RASLLPPH--------FAADC--------ISLAC--SLNTWLDRPRAEPLKE-------- 222
Query: 340 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGT 399
G + V+ G PN GKS+L N L + + +I + PGT
Sbjct: 223 -------------------------GFRVVLAGPPNAGKSTLFNALVEHEAAITAAEPGT 257
Query: 400 TRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIE 432
TRD++ + G P +DTAGLR + IE
Sbjct: 258 TRDLLTHAAALDGVPFTFVDTAGLRDEGAGEIE 290
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ +TIFALSSG G+ VIR+SGP AL S+A ++P PR A+L + DP
Sbjct: 1 MTDTIFALSSGQPPAGIGVIRISGPGAGAALSSLA----GRLPSPRRATLATLADPRDGT 56
Query: 86 VLDEGLCLWFP 96
LD + LW P
Sbjct: 57 HLDRTMVLWLP 67
>sp|Q89WP4|MNME_BRAJA tRNA modification GTPase MnmE OS=Bradyrhizobium japonicum (strain
USDA 110) GN=mnmE PE=3 SV=1
Length = 452
Score = 197 bits (501), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/333 (37%), Positives = 183/333 (54%), Gaps = 65/333 (19%)
Query: 103 VSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSF 162
++V+RVSG L ++A K+ PR AS R + D + + D+ + LWFP P S
Sbjct: 20 IAVVRVSGAQAGLVLTTLAG----KLPAPRQASRRLLRDGTGQPI-DDAVVLWFPGPASA 74
Query: 163 TGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLI 222
TGED EF HG AV+ A+L A++ +P +R AEPGEF++RAF N KLDLT+ E L DLI
Sbjct: 75 TGEDVAEFHAHGGRAVLAALLAAISVIPNMRAAEPGEFTRRAFENGKLDLTEAEGLDDLI 134
Query: 223 QAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQ 282
A+T+ QR++AL Q++G L +WR+ I+E+ A +EA IDFS+ E ++ +R+
Sbjct: 135 HADTDRQRRQALRQLQGLLGNRARDWRERIIEASALIEAGIDFSD----EGDVPAELRAP 190
Query: 283 VVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVV 342
V+ ++ H+E+ ++V+
Sbjct: 191 AVKAIKAL--HVEI------------------------------------------TEVL 206
Query: 343 QLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRD 402
G E+ +R G+ I GEPNVGKS+LMN L ++ ++IV+ GTTRD
Sbjct: 207 AAQGHSER-----------LRDGMVVAIAGEPNVGKSTLMNQLARRDVAIVSPHAGTTRD 255
Query: 403 VIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
VIE LD+ GYPV ++DTAG+R T D +E EG
Sbjct: 256 VIEVQLDLDGYPVTVIDTAGIR-ETDDPVEQEG 287
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TIFALSSG ++V+RVSG L ++A K+P PR AS R + D + +
Sbjct: 6 QTIFALSSGRPPSAIAVVRVSGAQAGLVLTTLAG----KLPAPRQASRRLLRDGTGQPI- 60
Query: 88 DEGLCLWFP 96
D+ + LWFP
Sbjct: 61 DDAVVLWFP 69
>sp|Q2J357|MNME_RHOP2 tRNA modification GTPase MnmE OS=Rhodopseudomonas palustris (strain
HaA2) GN=mnmE PE=3 SV=1
Length = 460
Score = 196 bits (499), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 116/335 (34%), Positives = 173/335 (51%), Gaps = 69/335 (20%)
Query: 103 VSVIRVSGPDTLNALKSM--ACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPN 160
++++RVSG + L ++ A P + V + R + V+ ++D+ + LWF P
Sbjct: 20 LAIVRVSGARARDVLAALTGALPPPRTVRRVR-------IRDVNHELIDDAVVLWFAAPA 72
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
S TGED EF +HG AV+ A++ AL +RPAEPGEF++RAF N KLDLT+ E L D
Sbjct: 73 SATGEDVAEFHIHGGRAVLAALVKALASFDDVRPAEPGEFTRRAFENGKLDLTEAEGLDD 132
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
LI A+TE QR+ A+ Q+ G L W R
Sbjct: 133 LIHADTEAQRRLAVRQLGGLLGDRARRW-------------------------------R 161
Query: 281 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQ 340
+Q+++ LA +EA IDF+++ ++ ++
Sbjct: 162 AQIIE---------------------------ALALIEAGIDFADEGDVQGELMAPALRT 194
Query: 341 VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
+ LHG I + + K R+R G+ I G PNVGKS+L+N L +++++IV+ GTT
Sbjct: 195 IATLHGEIAEVLAAQGKS-ERLRDGLVVAIAGPPNVGKSTLINRLARREVAIVSPHAGTT 253
Query: 401 RDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
RDVIE LD+GGYPV L+DTAG+R + D +E EG
Sbjct: 254 RDVIEVQLDLGGYPVTLIDTAGIR-ESEDSVEQEG 287
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TIFAL+SG ++++RVSG + L ++ +P PR I D V+ ++
Sbjct: 6 QTIFALASGRLPSALAIVRVSGARARDVLAALTG----ALPPPRTVRRVRIRD-VNHELI 60
Query: 88 DEGLCLWFPRHGKC-GVSVIRV---SGPDTLNAL-KSMACYPDQKVSKP 131
D+ + LWF G V G L AL K++A + D + ++P
Sbjct: 61 DDAVVLWFAAPASATGEDVAEFHIHGGRAVLAALVKALASFDDVRPAEP 109
>sp|B4RD04|MNME_PHEZH tRNA modification GTPase MnmE OS=Phenylobacterium zucineum (strain
HLK1) GN=mnmE PE=3 SV=1
Length = 445
Score = 194 bits (494), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 173/337 (51%), Gaps = 67/337 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ V+V+RVSGP T A++++A + +PR AS+R + D +D+ L LWFP
Sbjct: 13 GRAAVAVVRVSGPRTQTAVRTLAG----DLPEPRRASVRRLFD-ADGGEIDQALVLWFPG 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P S+TGED EF VHG AV A++ AL L GLR AEPGEF++RAF N KLDL Q E +
Sbjct: 68 PGSYTGEDAAEFHVHGGTAVTGALVEALAGL-GLRLAEPGEFTRRAFENGKLDLAQAEGV 126
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI +ETE QR
Sbjct: 127 ADLIDSETEGQR------------------------------------------------ 138
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
R + QL G + ++ R R + + L EA +DF ++E+ D + R
Sbjct: 139 -RQALEQLGGRL-------SQVQARWREALTEALAL--FEAAVDFPDEEVPAD-VAARAR 187
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+ L IE + + G R+R G + +VG PN GKS+L+N L ++ +IVT+ PG
Sbjct: 188 PVLETLAAEIEAAAADAAR-GERVREGFRIALVGAPNAGKSTLLNALAGREAAIVTATPG 246
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVIE + + GY V++ DTAGLR T+D IE EG
Sbjct: 247 TTRDVIEVPMVLAGYKVLMADTAGLR-DTADEIEAEG 282
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 112/248 (45%), Gaps = 67/248 (27%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ +TIFA ++ G+ V+V+RVSGP T A++++A +P+PR AS+R + D
Sbjct: 1 MSDTIFAPATAPGRAAVAVVRVSGPRTQTAVRTLAG----DLPEPRRASVRRLFD-ADGG 55
Query: 86 VLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSE 145
+D+ L LWFP GP Y + ++ + + E
Sbjct: 56 EIDQALVLWFP-------------GP---------GSYTGEDAAEFHVHGGTAVTGALVE 93
Query: 146 VVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAF 205
+ GL L +P FT +RAF
Sbjct: 94 ALA--GLGLRLAEPGEFT--------------------------------------RRAF 113
Query: 206 FNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDF 265
N KLDL Q E + DLI +ETE QR++AL Q+ G L Q+ + WR+ + E+LA EA +DF
Sbjct: 114 ENGKLDLAQAEGVADLIDSETEGQRRQALEQLGGRLSQVQARWREALTEALALFEAAVDF 173
Query: 266 SEDEIIED 273
++E+ D
Sbjct: 174 PDEEVPAD 181
>sp|Q2RN77|MNME_RHORT tRNA modification GTPase MnmE OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=mnmE PE=3 SV=1
Length = 455
Score = 194 bits (493), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 173/346 (50%), Gaps = 69/346 (19%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMAC-YPDQKVSKPRYASLRNIVDPVSEV-------VLD 149
G+ GV+++R+SGP AL +A P+ + + + VLD
Sbjct: 13 RGRAGVAIVRLSGPRAATALTLLAGRLPEARRATRAALRSPPSGPGPTGPGPEEGGEVLD 72
Query: 150 EGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNK 209
+ L LWFP P SFTGED E +HG AV+ A+LGAL LPGLRPAE GEFS+RAF N +
Sbjct: 73 DALVLWFPAPASFTGEDVAELHIHGGRAVLAAVLGALGDLPGLRPAEAGEFSRRAFLNGR 132
Query: 210 LDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDE 269
LDLT EAL DL+ AET+ QR++AL Q G L +LY WR+ + LA +EA +DF DE
Sbjct: 133 LDLTAAEALADLVDAETQAQRRQALRQADGALVRLYEGWRKTGIGLLAHLEAVLDFP-DE 191
Query: 270 IIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEII 329
+ + VR + L ++ H++ ++ G R+R G++ + A
Sbjct: 192 DLPPEVETAVRGGIGALADALAGHLDDRHR-GERLRDGLQVAVVGAP------------- 237
Query: 330 EDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389
N +S +V N+ R + I S I G
Sbjct: 238 -----NVGKSSLV-------------NRL-ARREAAIVSDIAG----------------- 261
Query: 390 ISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRD++E LD+GGYP+++ DTAGLR TSD IE EG
Sbjct: 262 ---------TTRDIVEVALDLGGYPLVVADTAGLR-ETSDGIEAEG 297
Score = 38.9 bits (89), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 16/81 (19%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPK------------PRYASL 75
+TIFA ++ G+ GV+++R+SGP AL +A ++P+ P
Sbjct: 4 DTIFAPATARGRAGVAIVRLSGPRAATALTLLAG----RLPEARRATRAALRSPPSGPGP 59
Query: 76 RNIVDPVSKVVLDEGLCLWFP 96
VLD+ L LWFP
Sbjct: 60 TGPGPEEGGEVLDDALVLWFP 80
>sp|A8I264|MNME_AZOC5 tRNA modification GTPase MnmE OS=Azorhizobium caulinodans (strain
ATCC 43989 / DSM 5975 / ORS 571) GN=mnmE PE=3 SV=1
Length = 435
Score = 192 bits (488), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 121/336 (36%), Positives = 171/336 (50%), Gaps = 66/336 (19%)
Query: 101 CGVSVIRVSGPDTLNALKSMA-CYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKP 159
GV+V+R SGP A ++A P +V+ RY +LR +P + +LD GL L+FP P
Sbjct: 18 SGVAVVRASGPRAREAGLALAGLVPPPRVA--RYVALR---EPGTGDLLDRGLILFFPGP 72
Query: 160 NSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALG 219
S TGED E +HG AV+ A+L L KLPG RPA GEF++RA N K+DL + E L
Sbjct: 73 RSATGEDTLELHLHGGPAVVTAVLRTLVKLPGFRPAAAGEFTRRAHANGKMDLAEVEGLA 132
Query: 220 DLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTV 279
DLI AE+E QR
Sbjct: 133 DLIVAESEAQR------------------------------------------------- 143
Query: 280 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRS 339
R + Q G++ + + G R R + LA VEA IDFS++ + D++ R+
Sbjct: 144 RQALAQSSGALSRAV-----AGWRERL----IRALALVEATIDFSDEGDVPDDLTGPARA 194
Query: 340 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGT 399
+ L + + +++ G R+R G I G PN GKS+L+N L ++ +IV+ +PGT
Sbjct: 195 EAAALCTELTTALADADR-GERVRDGFIIAIAGPPNAGKSTLLNRLAGREAAIVSPVPGT 253
Query: 400 TRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TRDV+E HL + G V L+DTAGLR T D++E EG
Sbjct: 254 TRDVLEVHLHLAGQAVTLVDTAGLR-ETDDLVEAEG 288
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFALSSG GV+V+R SGP A ++A VP PR A + +P + +L
Sbjct: 6 DTIFALSSGRVPSGVAVVRASGPRAREAGLALAGL----VPPPRVARYVALREPGTGDLL 61
Query: 88 DEGLCLWFP 96
D GL L+FP
Sbjct: 62 DRGLILFFP 70
>sp|A6TG09|MNME_KLEP7 tRNA modification GTPase MnmE OS=Klebsiella pneumoniae subsp.
pneumoniae (strain ATCC 700721 / MGH 78578) GN=mnmE PE=3
SV=1
Length = 454
Score = 191 bits (484), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 170/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG + +++ K+ KPRYA D V LD+G+ LWFP
Sbjct: 15 GRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFND-VDGTPLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E++ D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NEVMAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLRDANDEV 281
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG + +++ K+PKPRYA D V L
Sbjct: 5 DTIVAQATPPGRGGVGILRISGLKARDVAQAVLG----KLPKPRYADYLPFND-VDGTPL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 118
>sp|Q0AKE8|MNME_MARMM tRNA modification GTPase MnmE OS=Maricaulis maris (strain MCS10)
GN=mnmE PE=3 SV=1
Length = 438
Score = 190 bits (482), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 124/341 (36%), Positives = 169/341 (49%), Gaps = 73/341 (21%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV+VIR+SG L ++A P +PR A+LR + D V +D GL LWFP
Sbjct: 13 GRSGVAVIRLSGGGAGGMLDALAGLP---RPQPRMATLRALRDSGGSV-MDRGLVLWFPG 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED EF VHG AVI+A+L AL + G PAE GEF++RAF N K
Sbjct: 69 PGSFTGEDSAEFHVHGGPAVIDAVLSALDE-AGAHPAEAGEFTRRAFENEK--------- 118
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
ID +E E + D I
Sbjct: 119 --------------------------------------------IDLTEAEGLADLIDAE 134
Query: 279 VRSQVVQLHGSIEKHIELSNKCGV--RIRSGIKS--VICLASVEAYIDFSEDEIIEDNIL 334
Q VQ LS G R+ G + + +AS+E IDF ++ + D +
Sbjct: 135 TEGQRVQ---------ALSQMSGSLRRLYDGWRDALITAMASIEGEIDFPDEADVPDALS 185
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
+ + +L GS+ +H++ + G RIR G V++G PN GKSSL+N L ++ +IVT
Sbjct: 186 HAAYEPLSELIGSMFEHLD-DGRRGERIRIGFSIVLIGAPNAGKSSLLNCLARRDAAIVT 244
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IPGTTRD++E L +GG+PV++ DTAGLR D IE EG
Sbjct: 245 DIPGTTRDIVEVQLTLGGFPVVISDTAGLREAV-DAIEAEG 284
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV 85
+ T++AL++ G+ GV+VIR+SG L ++A P P+PR A+LR + D
Sbjct: 1 MNTTVYALATPAGRSGVAVIRLSGGGAGGMLDALAGLP---RPQPRMATLRALRDS-GGS 56
Query: 86 VLDEGLCLWFPRHG 99
V+D GL LWFP G
Sbjct: 57 VMDRGLVLWFPGPG 70
>sp|Q47U36|MNME_COLP3 tRNA modification GTPase MnmE OS=Colwellia psychrerythraea (strain
34H / ATCC BAA-681) GN=mnmE PE=3 SV=1
Length = 471
Score = 190 bits (482), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 125/338 (36%), Positives = 179/338 (52%), Gaps = 64/338 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKS-MACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ GV +IRVSGP+ N ++ + P+ V K Y + VLD+G+ L+F
Sbjct: 18 GRGGVGIIRVSGPEAKNVAQAILGKLPE--VRKAEYLPFLDCTSTDKTQVLDQGIALYFK 75
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
PNSFTGED EFQ HG +++ +L + P + A+PGEFS++AF N+KLDLTQ EA
Sbjct: 76 APNSFTGEDVIEFQGHGGPVILDMLLKVILAQPKVIMAKPGEFSEQAFLNDKLDLTQAEA 135
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DLI + +E + ALH ++G+ +L +E + I+ VEA IDF E+EI
Sbjct: 136 IADLINSSSEQAARSALHSLQGDFSKLVNEMVESIIHLRMYVEAAIDFPEEEI------- 188
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
L++K +I + +K++I +ED V
Sbjct: 189 ----------------DFLADK---KIVTDLKAIISR--------------VED-----V 210
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
R Q Q GSI IR G++ VI G PN GKSSL+N L KQ +IVT I
Sbjct: 211 RKQAQQ--GSI-------------IREGMRVVIAGRPNAGKSSLLNALSGKQTAIVTDIA 255
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GTTRDV+ + + I G P+ ++DTAGLR + D++E G
Sbjct: 256 GTTRDVLAEQIHIDGMPLHIIDTAGLR-DSDDVVEKIG 292
Score = 39.7 bits (91), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 12/102 (11%)
Query: 38 GKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS---KVVLDEGLCLW 94
G+ GV +IRVSGP+ N +++ K+P+ R A +D S VLD+G+ L+
Sbjct: 18 GRGGVGIIRVSGPEAKNVAQAILG----KLPEVRKAEYLPFLDCTSTDKTQVLDQGIALY 73
Query: 95 FPR-HGKCGVSVIRV---SGPDTLNA-LKSMACYPDQKVSKP 131
F + G VI GP L+ LK + P ++KP
Sbjct: 74 FKAPNSFTGEDVIEFQGHGGPVILDMLLKVILAQPKVIMAKP 115
>sp|B7LK49|MNME_ESCF3 tRNA modification GTPase MnmE OS=Escherichia fergusonii (strain
ATCC 35469 / DSM 13698 / CDC 0568-73) GN=mnmE PE=3 SV=1
Length = 454
Score = 189 bits (481), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>sp|B1LL33|MNME_ECOSM tRNA modification GTPase MnmE OS=Escherichia coli (strain SMS-3-5 /
SECEC) GN=mnmE PE=3 SV=1
Length = 454
Score = 189 bits (481), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>sp|B7N211|MNME_ECO81 tRNA modification GTPase MnmE OS=Escherichia coli O81 (strain ED1a)
GN=mnmE PE=3 SV=1
Length = 454
Score = 189 bits (481), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>sp|B7NR09|MNME_ECO7I tRNA modification GTPase MnmE OS=Escherichia coli O7:K1 (strain
IAI39 / ExPEC) GN=mnmE PE=3 SV=1
Length = 454
Score = 189 bits (481), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>sp|A7MN03|MNME_CROS8 tRNA modification GTPase MnmE OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=mnmE PE=3 SV=1
Length = 454
Score = 189 bits (481), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 169/332 (50%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++RVSG N +++ K+ K RYA D LD+G+ LWFP
Sbjct: 15 GRGGVGILRVSGQQARNVAQAVLG----KLPKARYADYLPFKD-ADGTALDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + LPG+R A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEEI---DFLSD 186
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +E+I D L+ VR
Sbjct: 187 ---------GKIEAQL-------------------------------NEVIGD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++RVSG N +++ K+PK RYA D L
Sbjct: 5 DTIVAQATPPGRGGVGILRVSGQQARNVAQAVLG----KLPKARYADYLPFKD-ADGTAL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118
>sp|B7UMH3|MNME_ECO27 tRNA modification GTPase MnmE OS=Escherichia coli O127:H6 (strain
E2348/69 / EPEC) GN=mnmE PE=3 SV=1
Length = 454
Score = 189 bits (481), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
>sp|Q3YWA7|MNME_SHISS tRNA modification GTPase MnmE OS=Shigella sonnei (strain Ss046)
GN=mnmE PE=3 SV=1
Length = 454
Score = 189 bits (481), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 172/332 (51%), Gaps = 65/332 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG L A + +A K+ KPRYA D VLD+G+ LWFP
Sbjct: 15 GRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVLDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI A +E + AL+ ++G + + + VEA IDF ++EI + L+
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI---DFLS- 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
G IE + +++I D L+ VR
Sbjct: 186 --------DGKIEAQL-------------------------------NDVIAD--LDAVR 204
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
++ Q G +R G+K VI G PN GKSSL+N L ++ +IVT I G
Sbjct: 205 AEARQ---------------GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 249
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
TTRDV+ +H+ I G P+ ++DTAGLR + ++
Sbjct: 250 TTRDVLREHIHIDGMPLHIIDTAGLREASDEV 281
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG L A + +A K+PKPRYA D VL
Sbjct: 5 DTIVAQATPPGRGGVGILRISG---LKA-REVAETVLGKLPKPRYADYLPFKD-ADGSVL 59
Query: 88 DEGLCLWFPR-HGKCGVSVIRV---SGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVD 141
D+G+ LWFP + G V+ + GP L+ LK + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,220,499
Number of Sequences: 539616
Number of extensions: 6325394
Number of successful extensions: 26501
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1638
Number of HSP's successfully gapped in prelim test: 172
Number of HSP's that attempted gapping in prelim test: 21952
Number of HSP's gapped (non-prelim): 3627
length of query: 445
length of database: 191,569,459
effective HSP length: 121
effective length of query: 324
effective length of database: 126,275,923
effective search space: 40913399052
effective search space used: 40913399052
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)