Query psy1007
Match_columns 445
No_of_seqs 404 out of 3728
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 17:08:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1007.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1007hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0486 ThdF Predicted GTPase 100.0 2.6E-75 5.6E-80 588.5 32.0 296 24-445 1-296 (454)
2 PRK05291 trmE tRNA modificatio 100.0 1.4E-65 3E-70 534.9 30.6 291 25-443 2-292 (449)
3 TIGR00450 mnmE_trmE_thdF tRNA 100.0 6.1E-63 1.3E-67 512.7 29.5 280 34-443 1-280 (442)
4 KOG1191|consensus 100.0 1.8E-52 3.9E-57 421.1 21.8 303 29-445 43-348 (531)
5 PF10396 TrmE_N: GTP-binding p 100.0 1.8E-41 3.8E-46 285.1 11.8 114 29-209 1-114 (114)
6 COG1162 Predicted GTPases [Gen 99.8 4E-21 8.7E-26 187.0 8.2 172 239-444 60-247 (301)
7 PRK12288 GTPase RsgA; Reviewed 99.7 9.7E-18 2.1E-22 169.4 12.7 159 254-444 116-288 (347)
8 TIGR00157 ribosome small subun 99.7 3.1E-18 6.7E-23 165.5 7.2 171 239-444 17-202 (245)
9 PRK12289 GTPase RsgA; Reviewed 99.7 7.7E-18 1.7E-22 170.2 8.4 170 239-444 70-254 (352)
10 COG0486 ThdF Predicted GTPase 99.7 5.8E-18 1.3E-22 172.3 4.5 157 86-314 60-224 (454)
11 PRK00098 GTPase RsgA; Reviewed 99.6 7.9E-16 1.7E-20 153.0 7.0 126 305-444 109-247 (298)
12 COG0404 GcvT Glycine cleavage 99.6 6.2E-15 1.3E-19 149.8 13.3 159 26-199 37-235 (379)
13 cd01854 YjeQ_engC YjeQ/EngC. 99.6 1.1E-15 2.3E-20 151.3 6.4 171 239-444 51-244 (287)
14 PRK05291 trmE tRNA modificatio 99.5 2.6E-15 5.7E-20 157.2 4.3 158 85-314 57-222 (449)
15 TIGR00450 mnmE_trmE_thdF tRNA 99.5 9.3E-15 2E-19 152.5 4.0 153 86-314 50-210 (442)
16 TIGR03156 GTP_HflX GTP-binding 99.5 4.3E-13 9.3E-18 136.2 14.6 60 364-424 188-248 (351)
17 PF03193 DUF258: Protein of un 99.5 1.7E-14 3.6E-19 129.8 3.4 104 331-444 2-118 (161)
18 cd01857 HSR1_MMR1 HSR1/MMR1. 99.4 7.5E-13 1.6E-17 117.1 11.4 99 306-424 41-139 (141)
19 COG1160 Predicted GTPases [Gen 99.4 1.7E-12 3.7E-17 132.2 12.2 126 305-444 110-259 (444)
20 cd01858 NGP_1 NGP-1. Autoanti 99.3 4.8E-12 1E-16 113.9 8.8 105 305-423 37-157 (157)
21 PRK12486 dmdA putative dimethy 99.3 9.7E-12 2.1E-16 127.2 11.8 149 26-189 43-222 (368)
22 PRK01889 GTPase RsgA; Reviewed 99.3 5.3E-12 1.1E-16 128.5 8.6 155 254-444 108-277 (356)
23 PRK09563 rbgA GTPase YlqF; Rev 99.3 5.9E-11 1.3E-15 117.5 15.2 106 307-427 51-180 (287)
24 TIGR03596 GTPase_YlqF ribosome 99.3 7.5E-11 1.6E-15 116.1 15.2 106 307-427 48-177 (276)
25 PLN02319 aminomethyltransferas 99.3 1.3E-11 2.8E-16 127.9 10.1 158 29-202 67-264 (404)
26 cd01856 YlqF YlqF. Proteins o 99.3 5.8E-11 1.3E-15 108.4 12.7 102 307-423 46-170 (171)
27 cd01849 YlqF_related_GTPase Yl 99.3 2.5E-11 5.5E-16 109.0 9.7 105 305-423 27-155 (155)
28 cd01855 YqeH YqeH. YqeH is an 99.2 2.5E-11 5.3E-16 112.6 8.7 112 306-423 60-190 (190)
29 PF02421 FeoB_N: Ferrous iron 99.2 4E-11 8.6E-16 107.8 9.6 64 366-430 1-64 (156)
30 cd01859 MJ1464 MJ1464. This f 99.2 7.6E-11 1.7E-15 105.7 11.5 103 306-423 40-156 (156)
31 cd04178 Nucleostemin_like Nucl 99.2 5.5E-11 1.2E-15 109.0 10.2 56 365-423 117-172 (172)
32 TIGR03597 GTPase_YqeH ribosome 99.2 3.3E-11 7.2E-16 122.9 9.6 123 307-437 90-230 (360)
33 PRK13796 GTPase YqeH; Provisio 99.2 3.1E-11 6.7E-16 123.3 9.4 111 307-424 96-221 (365)
34 COG1160 Predicted GTPases [Gen 99.2 2.3E-11 4.9E-16 124.1 7.7 78 366-443 4-81 (444)
35 KOG2770|consensus 99.2 5.9E-11 1.3E-15 115.9 9.4 156 39-209 74-266 (401)
36 COG1159 Era GTPase [General fu 99.2 4E-11 8.7E-16 116.4 7.9 74 367-441 8-81 (298)
37 PF01926 MMR_HSR1: 50S ribosom 99.2 7.9E-11 1.7E-15 100.2 8.7 60 367-426 1-60 (116)
38 COG1084 Predicted GTPase [Gene 99.2 1.6E-10 3.6E-15 113.2 11.4 72 364-436 167-238 (346)
39 PRK13579 gcvT glycine cleavage 99.2 2E-10 4.4E-15 117.7 11.5 164 28-208 43-237 (370)
40 PRK03003 GTP-binding protein D 99.1 4.5E-10 9.7E-15 118.8 13.3 62 365-426 211-272 (472)
41 TIGR03594 GTPase_EngA ribosome 99.1 9.5E-10 2.1E-14 114.7 13.5 123 305-441 105-250 (429)
42 PF10396 TrmE_N: GTP-binding p 99.1 1E-10 2.3E-15 98.8 4.5 112 90-238 1-114 (114)
43 COG1161 Predicted GTPases [Gen 99.1 9.1E-10 2E-14 110.7 12.1 59 366-427 133-191 (322)
44 TIGR00528 gcvT glycine cleavag 99.1 7.8E-10 1.7E-14 113.0 11.7 164 27-205 33-229 (361)
45 PRK00093 GTP-binding protein D 99.1 2.5E-09 5.3E-14 111.9 15.3 63 364-426 172-234 (435)
46 PF01571 GCV_T: Aminomethyltra 99.0 1.4E-09 3E-14 102.5 10.6 151 40-208 5-189 (211)
47 TIGR01372 soxA sarcosine oxida 99.0 1.5E-09 3.2E-14 124.2 12.3 162 29-204 638-841 (985)
48 TIGR00436 era GTP-binding prot 99.0 8.3E-10 1.8E-14 108.3 8.8 60 367-426 2-61 (270)
49 PRK09518 bifunctional cytidyla 99.0 2.6E-09 5.6E-14 118.3 13.5 61 366-426 451-511 (712)
50 cd04164 trmE TrmE (MnmE, ThdF, 99.0 1.9E-09 4.1E-14 95.1 9.4 73 365-438 1-73 (157)
51 PRK15494 era GTPase Era; Provi 99.0 1.7E-09 3.7E-14 109.5 9.0 61 365-425 52-112 (339)
52 KOG1424|consensus 99.0 2E-09 4.3E-14 110.7 9.4 56 366-424 315-370 (562)
53 PRK00389 gcvT glycine cleavage 98.9 1.2E-08 2.5E-13 104.2 12.9 164 29-208 36-233 (359)
54 cd01853 Toc34_like Toc34-like 98.9 3.5E-09 7.6E-14 102.6 8.4 67 360-426 26-92 (249)
55 PRK11058 GTPase HflX; Provisio 98.9 6.7E-09 1.5E-13 108.1 11.0 58 366-424 198-256 (426)
56 KOG2484|consensus 98.9 7.8E-09 1.7E-13 103.6 10.2 112 306-432 176-316 (435)
57 TIGR03594 GTPase_EngA ribosome 98.8 7.8E-09 1.7E-13 107.8 8.5 58 367-424 1-58 (429)
58 cd01852 AIG1 AIG1 (avrRpt2-ind 98.8 7E-09 1.5E-13 96.7 7.1 62 366-427 1-63 (196)
59 PRK00089 era GTPase Era; Revie 98.8 1.7E-08 3.7E-13 99.9 8.5 60 367-426 7-66 (292)
60 KOG0084|consensus 98.8 8.8E-09 1.9E-13 94.2 5.7 62 364-426 8-71 (205)
61 cd01897 NOG NOG1 is a nucleola 98.8 1.5E-08 3.3E-13 91.0 6.9 58 367-425 2-59 (168)
62 cd01894 EngA1 EngA1 subfamily. 98.7 2.6E-08 5.6E-13 87.9 7.2 58 369-426 1-58 (157)
63 cd01895 EngA2 EngA2 subfamily. 98.7 4.5E-08 9.7E-13 87.5 8.8 62 365-426 2-63 (174)
64 cd01879 FeoB Ferrous iron tran 98.7 2.3E-08 5E-13 88.5 6.6 58 370-428 1-58 (158)
65 TIGR00991 3a0901s02IAP34 GTP-b 98.7 2.8E-08 6E-13 98.5 7.6 63 364-426 37-99 (313)
66 PRK00093 GTP-binding protein D 98.7 3.6E-08 7.9E-13 103.1 8.9 60 366-425 2-61 (435)
67 PRK03003 GTP-binding protein D 98.7 3.4E-08 7.4E-13 104.5 8.8 60 365-424 38-97 (472)
68 cd01878 HflX HflX subfamily. 98.7 9.9E-08 2.1E-12 89.1 10.5 59 366-425 42-101 (204)
69 KOG1423|consensus 98.7 3.3E-08 7.2E-13 96.1 7.1 63 364-426 71-133 (379)
70 cd01898 Obg Obg subfamily. Th 98.7 2E-08 4.3E-13 90.3 5.3 57 367-424 2-59 (170)
71 PTZ00258 GTP-binding protein; 98.7 4.7E-08 1E-12 100.2 8.2 63 362-425 18-97 (390)
72 KOG0080|consensus 98.7 3.5E-08 7.6E-13 87.3 5.6 61 365-427 11-74 (209)
73 cd04136 Rap_like Rap-like subf 98.7 4.9E-08 1.1E-12 87.0 6.8 59 366-426 2-62 (163)
74 KOG0394|consensus 98.7 1.7E-08 3.7E-13 91.3 3.7 62 365-427 9-72 (210)
75 cd04163 Era Era subfamily. Er 98.6 1.1E-07 2.3E-12 84.1 8.7 62 365-426 3-64 (168)
76 TIGR00231 small_GTP small GTP- 98.6 6.8E-08 1.5E-12 84.2 7.3 60 366-426 2-63 (161)
77 PRK09601 GTP-binding protein Y 98.6 7.9E-08 1.7E-12 97.5 8.7 60 365-425 2-78 (364)
78 PRK09518 bifunctional cytidyla 98.6 8.1E-08 1.8E-12 106.5 9.6 60 366-425 276-335 (712)
79 KOG0094|consensus 98.6 3.4E-08 7.3E-13 90.2 5.1 62 364-426 21-84 (221)
80 cd01861 Rab6 Rab6 subfamily. 98.6 7.6E-08 1.7E-12 85.7 7.2 59 366-425 1-61 (161)
81 cd04138 H_N_K_Ras_like H-Ras/N 98.6 7.2E-08 1.6E-12 85.5 7.0 59 366-426 2-62 (162)
82 cd01900 YchF YchF subfamily. 98.6 6.6E-08 1.4E-12 94.9 7.3 57 368-425 1-74 (274)
83 PRK12298 obgE GTPase CgtA; Rev 98.6 4.5E-08 9.8E-13 100.9 6.3 59 366-425 160-219 (390)
84 cd04171 SelB SelB subfamily. 98.6 5.2E-08 1.1E-12 86.7 5.6 60 367-426 2-64 (164)
85 TIGR00993 3a0901s04IAP86 chlor 98.6 1.4E-07 3E-12 100.9 9.4 68 362-429 115-182 (763)
86 cd01896 DRG The developmentall 98.6 8.5E-08 1.9E-12 92.1 7.2 59 367-426 2-60 (233)
87 COG0370 FeoB Fe2+ transport sy 98.6 1E-07 2.3E-12 101.8 8.2 66 366-432 4-69 (653)
88 cd01881 Obg_like The Obg-like 98.6 3.3E-08 7.2E-13 89.2 3.8 54 370-424 1-55 (176)
89 cd04175 Rap1 Rap1 subgroup. T 98.6 1.1E-07 2.4E-12 85.2 7.0 59 366-426 2-62 (164)
90 PF04548 AIG1: AIG1 family; I 98.6 9E-08 1.9E-12 90.6 6.7 62 366-427 1-63 (212)
91 TIGR03598 GTPase_YsxC ribosome 98.6 1.7E-07 3.7E-12 85.9 8.3 61 363-426 16-77 (179)
92 smart00173 RAS Ras subfamily o 98.6 1.1E-07 2.4E-12 85.0 6.8 59 366-426 1-61 (164)
93 cd04145 M_R_Ras_like M-Ras/R-R 98.6 1.4E-07 3.1E-12 84.1 7.3 59 366-426 3-63 (164)
94 PRK12299 obgE GTPase CgtA; Rev 98.6 9.4E-08 2E-12 96.6 6.4 59 366-425 159-218 (335)
95 cd04142 RRP22 RRP22 subfamily. 98.6 1.3E-07 2.9E-12 88.5 6.9 60 366-426 1-62 (198)
96 COG0218 Predicted GTPase [Gene 98.6 2.1E-07 4.5E-12 86.1 8.0 59 364-425 23-82 (200)
97 KOG0092|consensus 98.5 1.3E-07 2.8E-12 86.4 6.4 61 365-426 5-67 (200)
98 KOG2485|consensus 98.5 2E-07 4.4E-12 91.0 8.2 67 364-430 142-213 (335)
99 PRK00454 engB GTP-binding prot 98.5 2.3E-07 4.9E-12 85.7 8.2 59 364-425 23-82 (196)
100 cd04119 RJL RJL (RabJ-Like) su 98.5 1.8E-07 4E-12 83.4 7.2 58 366-424 1-60 (168)
101 cd01868 Rab11_like Rab11-like. 98.5 1.7E-07 3.6E-12 84.0 6.8 59 366-425 4-64 (165)
102 PRK12296 obgE GTPase CgtA; Rev 98.5 1.9E-07 4E-12 98.5 8.0 61 364-425 158-218 (500)
103 KOG0087|consensus 98.5 1.1E-07 2.3E-12 88.1 5.2 65 361-426 10-76 (222)
104 cd04176 Rap2 Rap2 subgroup. T 98.5 2E-07 4.4E-12 83.3 7.0 59 366-426 2-62 (163)
105 KOG1191|consensus 98.5 5.7E-08 1.2E-12 99.8 3.6 207 69-330 23-234 (531)
106 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.5 2E-07 4.4E-12 83.7 6.8 59 366-425 3-63 (166)
107 TIGR02729 Obg_CgtA Obg family 98.5 1.8E-07 4E-12 94.3 7.0 60 366-426 158-218 (329)
108 COG1163 DRG Predicted GTPase [ 98.5 1.5E-07 3.3E-12 92.3 5.6 60 366-426 64-123 (365)
109 PRK09554 feoB ferrous iron tra 98.5 2.1E-07 4.6E-12 103.4 7.4 62 365-427 3-64 (772)
110 PRK04213 GTP-binding protein; 98.5 1.7E-07 3.7E-12 87.2 5.6 56 364-424 8-63 (201)
111 cd01867 Rab8_Rab10_Rab13_like 98.5 2.9E-07 6.3E-12 83.0 6.9 59 366-425 4-64 (167)
112 cd01865 Rab3 Rab3 subfamily. 98.5 3.2E-07 6.8E-12 82.6 6.9 59 366-425 2-62 (165)
113 cd01864 Rab19 Rab19 subfamily. 98.5 3.5E-07 7.5E-12 82.1 7.0 60 365-425 3-64 (165)
114 cd04122 Rab14 Rab14 subfamily. 98.5 3.1E-07 6.6E-12 82.7 6.6 58 366-425 3-63 (166)
115 cd04107 Rab32_Rab38 Rab38/Rab3 98.5 3.3E-07 7.1E-12 85.6 6.9 60 366-426 1-63 (201)
116 COG3596 Predicted GTPase [Gene 98.5 1E-07 2.2E-12 91.9 3.4 63 364-426 38-100 (296)
117 cd04106 Rab23_lke Rab23-like s 98.5 2.7E-07 5.8E-12 82.2 5.9 60 366-426 1-64 (162)
118 PRK12297 obgE GTPase CgtA; Rev 98.5 2.6E-07 5.7E-12 96.0 6.6 59 366-425 159-218 (424)
119 KOG0079|consensus 98.5 7E-08 1.5E-12 84.3 2.0 60 366-426 9-70 (198)
120 PTZ00369 Ras-like protein; Pro 98.4 4.1E-07 8.8E-12 84.1 7.2 60 365-426 5-66 (189)
121 cd01874 Cdc42 Cdc42 subfamily. 98.4 4.2E-07 9E-12 83.2 7.2 59 366-426 2-62 (175)
122 cd04108 Rab36_Rab34 Rab34/Rab3 98.4 3.1E-07 6.8E-12 83.5 6.3 58 367-425 2-61 (170)
123 cd04177 RSR1 RSR1 subgroup. R 98.4 4.2E-07 9.2E-12 82.0 7.1 59 366-426 2-62 (168)
124 cd04131 Rnd Rnd subfamily. Th 98.4 3.6E-07 7.9E-12 84.0 6.8 59 366-426 2-62 (178)
125 KOG0098|consensus 98.4 2.4E-07 5.3E-12 84.1 5.3 60 366-426 7-68 (216)
126 cd04112 Rab26 Rab26 subfamily. 98.4 4.4E-07 9.5E-12 84.0 7.1 60 366-425 1-62 (191)
127 cd04109 Rab28 Rab28 subfamily. 98.4 4.1E-07 9E-12 86.0 7.0 58 366-424 1-61 (215)
128 cd04113 Rab4 Rab4 subfamily. 98.4 4.3E-07 9.3E-12 81.0 6.8 59 366-425 1-61 (161)
129 cd01866 Rab2 Rab2 subfamily. 98.4 4.6E-07 1E-11 81.8 7.0 59 366-425 5-65 (168)
130 cd04139 RalA_RalB RalA/RalB su 98.4 4E-07 8.7E-12 80.9 6.5 59 366-426 1-61 (164)
131 cd04124 RabL2 RabL2 subfamily. 98.4 4.6E-07 9.9E-12 81.4 6.8 60 366-426 1-62 (161)
132 cd04140 ARHI_like ARHI subfami 98.4 5.3E-07 1.1E-11 81.1 7.2 59 366-426 2-62 (165)
133 KOG0095|consensus 98.4 2.8E-07 6.1E-12 80.6 5.1 60 366-426 8-69 (213)
134 smart00175 RAB Rab subfamily o 98.4 5.2E-07 1.1E-11 80.3 7.1 58 366-424 1-60 (164)
135 cd04160 Arfrp1 Arfrp1 subfamil 98.4 2.9E-07 6.4E-12 82.5 5.5 60 367-426 1-63 (167)
136 KOG0078|consensus 98.4 3.3E-07 7.2E-12 84.9 5.9 62 364-426 11-74 (207)
137 cd04116 Rab9 Rab9 subfamily. 98.4 3.9E-07 8.4E-12 82.2 6.3 59 366-425 6-66 (170)
138 cd04118 Rab24 Rab24 subfamily. 98.4 4.8E-07 1E-11 83.6 7.0 60 366-426 1-63 (193)
139 cd04135 Tc10 TC10 subfamily. 98.4 5.8E-07 1.3E-11 81.3 7.3 58 366-425 1-60 (174)
140 cd04130 Wrch_1 Wrch-1 subfamil 98.4 5.4E-07 1.2E-11 81.8 7.1 59 366-426 1-61 (173)
141 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.4 4.5E-07 9.8E-12 83.7 6.6 60 365-426 5-66 (182)
142 cd04117 Rab15 Rab15 subfamily. 98.4 5.3E-07 1.1E-11 81.0 6.7 60 366-426 1-62 (161)
143 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.4 5.2E-07 1.1E-11 82.2 6.7 59 366-426 3-63 (172)
144 cd01899 Ygr210 Ygr210 subfamil 98.4 5.4E-07 1.2E-11 90.4 7.4 57 368-425 1-81 (318)
145 cd04120 Rab12 Rab12 subfamily. 98.4 5.5E-07 1.2E-11 84.7 6.9 60 366-426 1-62 (202)
146 cd01860 Rab5_related Rab5-rela 98.4 6.2E-07 1.3E-11 79.9 6.8 58 366-424 2-61 (163)
147 cd04144 Ras2 Ras2 subfamily. 98.4 4.5E-07 9.7E-12 83.9 5.9 57 367-425 1-59 (190)
148 cd04115 Rab33B_Rab33A Rab33B/R 98.4 5.4E-07 1.2E-11 81.6 6.3 60 366-426 3-64 (170)
149 COG2262 HflX GTPases [General 98.4 2.4E-06 5.2E-11 86.6 11.3 76 366-443 193-269 (411)
150 cd04128 Spg1 Spg1p. Spg1p (se 98.4 7.1E-07 1.5E-11 82.3 7.0 60 366-426 1-62 (182)
151 cd01887 IF2_eIF5B IF2/eIF5B (i 98.4 4.6E-07 9.9E-12 81.1 5.6 58 367-425 2-62 (168)
152 cd04133 Rop_like Rop subfamily 98.4 8.5E-07 1.9E-11 81.5 7.4 60 366-427 2-63 (176)
153 cd04127 Rab27A Rab27a subfamil 98.4 7.2E-07 1.6E-11 81.2 6.7 59 366-425 5-75 (180)
154 cd01892 Miro2 Miro2 subfamily. 98.4 8.2E-07 1.8E-11 80.6 7.1 62 364-426 3-67 (169)
155 cd01862 Rab7 Rab7 subfamily. 98.4 8.7E-07 1.9E-11 79.6 7.1 59 366-425 1-61 (172)
156 PLN03118 Rab family protein; P 98.4 4.1E-07 8.9E-12 85.6 5.2 61 364-426 13-75 (211)
157 PRK09602 translation-associate 98.4 8.3E-07 1.8E-11 91.7 7.8 59 366-425 2-84 (396)
158 cd01863 Rab18 Rab18 subfamily. 98.4 9.2E-07 2E-11 78.8 7.1 60 366-426 1-62 (161)
159 cd01870 RhoA_like RhoA-like su 98.4 8.9E-07 1.9E-11 80.1 6.8 58 366-425 2-61 (175)
160 cd04110 Rab35 Rab35 subfamily. 98.3 9.2E-07 2E-11 82.5 7.0 60 365-425 6-67 (199)
161 cd04125 RabA_like RabA-like su 98.3 9.8E-07 2.1E-11 81.3 7.1 59 366-425 1-61 (188)
162 PLN03110 Rab GTPase; Provision 98.3 8E-07 1.7E-11 84.2 6.6 61 364-425 11-73 (216)
163 cd00877 Ran Ran (Ras-related n 98.3 1.1E-06 2.4E-11 79.5 7.2 60 366-426 1-62 (166)
164 cd04146 RERG_RasL11_like RERG/ 98.3 6.8E-07 1.5E-11 80.3 5.6 57 367-425 1-59 (165)
165 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.3 7.8E-07 1.7E-11 84.9 6.3 59 366-426 2-62 (222)
166 cd01875 RhoG RhoG subfamily. 98.3 1E-06 2.3E-11 81.7 7.0 60 365-426 3-64 (191)
167 cd01850 CDC_Septin CDC/Septin. 98.3 1.9E-06 4.1E-11 85.0 9.0 61 366-426 5-76 (276)
168 cd01871 Rac1_like Rac1-like su 98.3 1.2E-06 2.6E-11 80.0 7.2 59 366-426 2-62 (174)
169 cd00157 Rho Rho (Ras homology) 98.3 1.3E-06 2.8E-11 78.4 7.3 59 366-426 1-61 (171)
170 KOG2423|consensus 98.3 5.6E-07 1.2E-11 90.1 5.1 63 364-429 306-368 (572)
171 cd04143 Rhes_like Rhes_like su 98.3 9.7E-07 2.1E-11 85.6 6.5 59 366-426 1-61 (247)
172 smart00174 RHO Rho (Ras homolo 98.3 1.1E-06 2.4E-11 79.4 6.5 57 368-426 1-59 (174)
173 cd00154 Rab Rab family. Rab G 98.3 1.4E-06 2.9E-11 76.4 6.8 59 366-425 1-61 (159)
174 smart00178 SAR Sar1p-like memb 98.3 1.2E-06 2.7E-11 80.6 6.7 58 364-425 16-73 (184)
175 cd04123 Rab21 Rab21 subfamily. 98.3 1.5E-06 3.3E-11 76.9 7.1 58 366-424 1-60 (162)
176 cd01889 SelB_euk SelB subfamil 98.3 6.3E-07 1.4E-11 83.1 4.7 59 366-424 1-79 (192)
177 cd04158 ARD1 ARD1 subfamily. 98.3 1.4E-06 3E-11 78.9 6.9 56 367-426 1-56 (169)
178 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.3 1.3E-06 2.8E-11 84.0 6.9 60 365-426 13-74 (232)
179 KOG0086|consensus 98.3 5.3E-07 1.1E-11 79.2 3.8 60 366-426 10-71 (214)
180 cd04132 Rho4_like Rho4-like su 98.3 1.2E-06 2.6E-11 80.4 6.4 58 366-425 1-61 (187)
181 cd04111 Rab39 Rab39 subfamily. 98.3 1.1E-06 2.5E-11 82.9 6.4 59 366-425 3-64 (211)
182 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.3 1.2E-06 2.6E-11 80.6 6.4 59 365-425 3-64 (183)
183 cd04154 Arl2 Arl2 subfamily. 98.3 1.3E-06 2.9E-11 79.2 6.5 58 364-425 13-70 (173)
184 cd04149 Arf6 Arf6 subfamily. 98.3 1.5E-06 3.3E-11 78.8 6.9 58 364-425 8-65 (168)
185 cd04157 Arl6 Arl6 subfamily. 98.3 1.1E-06 2.4E-11 78.1 5.8 57 367-425 1-57 (162)
186 TIGR00437 feoB ferrous iron tr 98.3 1.6E-06 3.5E-11 94.0 8.1 56 372-428 1-56 (591)
187 cd04134 Rho3 Rho3 subfamily. 98.3 1.8E-06 3.9E-11 79.9 7.2 59 366-426 1-61 (189)
188 cd04121 Rab40 Rab40 subfamily. 98.3 1.7E-06 3.8E-11 80.4 7.1 60 366-426 7-68 (189)
189 cd04137 RheB Rheb (Ras Homolog 98.3 1.4E-06 3.1E-11 79.3 6.2 59 366-426 2-62 (180)
190 cd04114 Rab30 Rab30 subfamily. 98.3 1.6E-06 3.5E-11 77.9 6.4 59 366-425 8-68 (169)
191 PLN03071 GTP-binding nuclear p 98.3 1.8E-06 3.9E-11 82.0 7.0 62 364-426 12-75 (219)
192 PLN03108 Rab family protein; P 98.3 2E-06 4.2E-11 81.2 6.9 59 366-425 7-67 (210)
193 cd04159 Arl10_like Arl10-like 98.2 1.7E-06 3.6E-11 75.9 6.0 55 368-425 2-56 (159)
194 cd04150 Arf1_5_like Arf1-Arf5- 98.2 2E-06 4.3E-11 77.2 6.5 56 366-425 1-56 (159)
195 cd00878 Arf_Arl Arf (ADP-ribos 98.2 1.8E-06 3.9E-11 76.7 6.1 55 367-425 1-55 (158)
196 cd04166 CysN_ATPS CysN_ATPS su 98.2 5.4E-07 1.2E-11 84.9 2.8 60 367-426 1-90 (208)
197 cd00879 Sar1 Sar1 subfamily. 98.2 2.4E-06 5.2E-11 78.6 6.8 58 364-425 18-75 (190)
198 cd00880 Era_like Era (E. coli 98.2 1.4E-06 3.1E-11 75.7 5.0 58 370-427 1-59 (163)
199 cd04101 RabL4 RabL4 (Rab-like4 98.2 2.8E-06 6E-11 75.9 6.8 58 366-425 1-64 (164)
200 cd04148 RGK RGK subfamily. Th 98.2 2.6E-06 5.7E-11 81.1 6.9 58 366-424 1-61 (221)
201 PTZ00133 ADP-ribosylation fact 98.2 2.8E-06 6E-11 78.3 6.8 58 364-425 16-73 (182)
202 cd01891 TypA_BipA TypA (tyrosi 98.2 1.6E-06 3.4E-11 80.6 5.2 60 367-426 4-78 (194)
203 PRK09559 putative global regul 98.2 1E-05 2.2E-10 81.7 11.4 125 41-188 26-179 (327)
204 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.2 2.7E-06 5.9E-11 77.4 6.6 57 365-425 15-71 (174)
205 cd00876 Ras Ras family. The R 98.2 2.1E-06 4.6E-11 75.8 5.7 57 367-425 1-59 (160)
206 cd01893 Miro1 Miro1 subfamily. 98.2 2.4E-06 5.2E-11 77.0 6.1 57 366-425 1-59 (166)
207 cd04147 Ras_dva Ras-dva subfam 98.2 2.2E-06 4.7E-11 79.9 5.9 58 367-426 1-60 (198)
208 cd04151 Arl1 Arl1 subfamily. 98.2 2.3E-06 4.9E-11 76.3 5.5 55 367-425 1-55 (158)
209 smart00177 ARF ARF-like small 98.2 3.5E-06 7.6E-11 76.9 6.8 58 364-425 12-69 (175)
210 cd04103 Centaurin_gamma Centau 98.2 4.2E-06 9E-11 75.3 7.1 57 366-425 1-59 (158)
211 PF00071 Ras: Ras family; Int 98.2 3.2E-06 6.9E-11 75.3 6.2 59 367-426 1-61 (162)
212 cd04155 Arl3 Arl3 subfamily. 98.2 4.1E-06 8.9E-11 75.6 7.0 58 364-425 13-70 (173)
213 cd01851 GBP Guanylate-binding 98.2 3.9E-06 8.4E-11 80.2 7.0 63 366-428 8-75 (224)
214 cd04102 RabL3 RabL3 (Rab-like3 98.2 3.9E-06 8.4E-11 78.9 6.6 60 366-426 1-67 (202)
215 cd01876 YihA_EngB The YihA (En 98.1 6.6E-06 1.4E-10 72.8 7.6 55 368-425 2-57 (170)
216 cd00881 GTP_translation_factor 98.1 2.8E-06 6.1E-11 77.3 5.1 59 367-425 1-74 (189)
217 cd04162 Arl9_Arfrp2_like Arl9/ 98.1 4.6E-06 9.9E-11 75.3 6.2 57 367-426 1-57 (164)
218 PLN00223 ADP-ribosylation fact 98.1 5.6E-06 1.2E-10 76.2 6.8 58 364-425 16-73 (181)
219 COG1100 GTPase SAR1 and relate 98.1 3.5E-06 7.7E-11 79.2 5.2 60 366-426 6-67 (219)
220 cd04161 Arl2l1_Arl13_like Arl2 98.1 4.9E-06 1.1E-10 75.3 5.9 55 367-425 1-55 (167)
221 cd04126 Rab20 Rab20 subfamily. 98.1 6.4E-06 1.4E-10 78.5 6.8 57 366-426 1-57 (220)
222 cd04156 ARLTS1 ARLTS1 subfamil 98.1 6E-06 1.3E-10 73.4 5.8 55 367-425 1-56 (160)
223 PRK12317 elongation factor 1-a 98.1 4.5E-06 9.7E-11 87.3 5.3 63 364-426 5-97 (425)
224 KOG0091|consensus 98.0 1E-06 2.2E-11 78.4 0.4 62 364-426 7-71 (213)
225 cd01890 LepA LepA subfamily. 98.0 4.2E-06 9.2E-11 75.9 4.4 60 367-426 2-80 (179)
226 PLN00023 GTP-binding protein; 98.0 1E-05 2.2E-10 81.0 7.2 62 364-426 20-96 (334)
227 KOG0097|consensus 98.0 3.9E-06 8.5E-11 72.8 3.7 59 366-426 12-73 (215)
228 PF08477 Miro: Miro-like prote 98.0 5.1E-06 1.1E-10 70.3 4.4 60 367-426 1-63 (119)
229 cd04129 Rho2 Rho2 subfamily. 98.0 1.1E-05 2.4E-10 74.3 7.0 59 366-426 2-62 (187)
230 COG0012 Predicted GTPase, prob 98.0 6E-06 1.3E-10 83.1 5.4 60 365-425 2-79 (372)
231 cd04104 p47_IIGP_like p47 (47- 98.0 5.3E-06 1.1E-10 77.5 4.8 60 366-426 2-65 (197)
232 PTZ00132 GTP-binding nuclear p 98.0 1.2E-05 2.6E-10 75.8 7.0 61 365-426 9-71 (215)
233 TIGR02528 EutP ethanolamine ut 98.0 4.4E-06 9.6E-11 73.0 3.6 45 367-424 2-46 (142)
234 KOG0393|consensus 98.0 4.8E-06 1E-10 77.3 4.0 61 365-427 4-67 (198)
235 TIGR00487 IF-2 translation ini 98.0 1E-05 2.2E-10 87.6 6.9 63 364-427 86-149 (587)
236 KOG1486|consensus 97.9 2.5E-05 5.4E-10 74.4 7.0 60 366-426 63-122 (364)
237 PF00735 Septin: Septin; Inte 97.9 3.9E-05 8.4E-10 75.8 8.7 60 366-425 5-75 (281)
238 PRK05306 infB translation init 97.9 2.1E-05 4.5E-10 87.6 7.1 64 363-427 288-351 (787)
239 cd04168 TetM_like Tet(M)-like 97.9 1.9E-05 4.2E-10 76.0 5.5 60 367-426 1-77 (237)
240 TIGR00092 GTP-binding protein 97.8 2.4E-05 5.1E-10 79.7 5.8 61 366-426 3-80 (368)
241 cd01873 RhoBTB RhoBTB subfamil 97.8 3.7E-05 8.1E-10 71.8 6.7 60 365-424 2-77 (195)
242 KOG1491|consensus 97.8 2.1E-05 4.6E-10 77.8 5.2 73 364-440 19-108 (391)
243 KOG1490|consensus 97.8 1E-05 2.3E-10 83.5 3.0 73 364-437 167-239 (620)
244 cd01886 EF-G Elongation factor 97.8 2.6E-05 5.7E-10 76.6 5.5 60 367-426 1-77 (270)
245 KOG0395|consensus 97.8 3.1E-05 6.7E-10 72.5 5.6 61 365-427 3-65 (196)
246 cd04105 SR_beta Signal recogni 97.8 3.9E-05 8.3E-10 72.1 6.0 58 367-426 2-61 (203)
247 smart00176 RAN Ran (Ras-relate 97.8 3.8E-05 8.2E-10 72.1 5.5 55 371-426 1-57 (200)
248 PRK15467 ethanolamine utilizat 97.7 3.6E-05 7.8E-10 69.3 5.0 46 367-424 3-48 (158)
249 TIGR02836 spore_IV_A stage IV 97.7 4.7E-05 1E-09 77.9 6.0 62 366-427 18-105 (492)
250 KOG2844|consensus 97.7 0.00016 3.6E-09 77.1 10.2 181 39-266 523-735 (856)
251 KOG1547|consensus 97.7 8.1E-05 1.8E-09 70.5 7.1 61 366-426 47-117 (336)
252 TIGR00475 selB selenocysteine- 97.7 3.8E-05 8.3E-10 83.3 5.5 60 366-425 1-62 (581)
253 cd04169 RF3 RF3 subfamily. Pe 97.7 4.2E-05 9.1E-10 75.0 5.2 60 367-426 4-84 (267)
254 KOG1489|consensus 97.7 2.7E-05 5.8E-10 76.6 3.7 62 364-426 195-257 (366)
255 PF05049 IIGP: Interferon-indu 97.7 7.7E-05 1.7E-09 76.0 7.0 61 364-426 34-99 (376)
256 KOG0410|consensus 97.6 0.00036 7.8E-09 68.9 10.5 71 365-441 178-249 (410)
257 cd01884 EF_Tu EF-Tu subfamily. 97.6 5.6E-05 1.2E-09 70.7 4.7 60 366-425 3-77 (195)
258 CHL00189 infB translation init 97.6 5.6E-05 1.2E-09 83.5 5.4 63 363-426 242-308 (742)
259 COG0536 Obg Predicted GTPase [ 97.6 4.8E-05 1E-09 75.6 4.1 59 367-426 161-220 (369)
260 cd04170 EF-G_bact Elongation f 97.6 7.2E-05 1.6E-09 73.2 5.3 59 367-425 1-76 (268)
261 KOG0083|consensus 97.6 1.6E-05 3.5E-10 68.5 0.5 57 370-426 2-60 (192)
262 KOG0088|consensus 97.6 1.6E-05 3.5E-10 70.4 0.4 61 365-426 13-75 (218)
263 PF00025 Arf: ADP-ribosylation 97.6 0.00012 2.6E-09 67.0 6.1 58 364-425 13-70 (175)
264 KOG0093|consensus 97.6 0.00011 2.4E-09 64.5 5.5 63 362-425 18-82 (193)
265 cd00882 Ras_like_GTPase Ras-li 97.6 5.2E-05 1.1E-09 64.8 3.3 55 370-425 1-57 (157)
266 TIGR00491 aIF-2 translation in 97.6 7.1E-05 1.5E-09 81.1 5.0 59 367-426 6-82 (590)
267 cd04167 Snu114p Snu114p subfam 97.5 9.1E-05 2E-09 69.9 4.6 23 367-389 2-24 (213)
268 CHL00071 tufA elongation facto 97.5 0.0001 2.2E-09 76.8 5.1 61 364-424 11-86 (409)
269 PRK12735 elongation factor Tu; 97.5 8.8E-05 1.9E-09 76.9 4.2 63 363-425 10-87 (396)
270 COG5019 CDC3 Septin family pro 97.5 0.00035 7.5E-09 70.3 7.8 62 365-426 23-95 (373)
271 TIGR00484 EF-G translation elo 97.5 0.00016 3.5E-09 80.2 6.1 61 366-426 11-88 (689)
272 cd01883 EF1_alpha Eukaryotic e 97.5 9.9E-05 2.1E-09 70.1 3.9 59 367-425 1-89 (219)
273 KOG0075|consensus 97.5 7.3E-05 1.6E-09 65.7 2.5 62 362-426 17-78 (186)
274 KOG0073|consensus 97.5 0.00026 5.7E-09 63.3 6.1 58 364-425 15-72 (185)
275 KOG2655|consensus 97.5 0.00026 5.5E-09 71.5 6.8 61 366-426 22-92 (366)
276 TIGR00483 EF-1_alpha translati 97.4 0.00012 2.5E-09 76.6 4.4 62 364-425 6-97 (426)
277 TIGR00485 EF-Tu translation el 97.4 0.00014 3E-09 75.4 4.4 64 363-426 10-88 (394)
278 PLN03127 Elongation factor Tu; 97.4 0.00026 5.6E-09 74.5 6.5 63 363-425 59-136 (447)
279 KOG4252|consensus 97.4 1.1E-05 2.3E-10 72.9 -3.4 67 360-427 15-83 (246)
280 KOG0081|consensus 97.3 2.6E-05 5.6E-10 69.2 -1.5 60 366-426 10-80 (219)
281 PF04670 Gtr1_RagA: Gtr1/RagA 97.3 0.00029 6.2E-09 67.6 5.3 61 367-427 1-62 (232)
282 PRK05506 bifunctional sulfate 97.3 0.00016 3.4E-09 79.5 3.7 62 364-425 23-116 (632)
283 PRK12736 elongation factor Tu; 97.3 0.00019 4.2E-09 74.3 4.0 63 363-425 10-87 (394)
284 PF10662 PduV-EutP: Ethanolami 97.3 0.00024 5.2E-09 62.9 3.9 46 366-424 2-47 (143)
285 PRK10218 GTP-binding protein; 97.3 0.00046 9.9E-09 75.1 6.6 62 366-427 6-82 (607)
286 PRK12739 elongation factor G; 97.3 0.00035 7.5E-09 77.5 5.7 60 366-425 9-85 (691)
287 TIGR01393 lepA GTP-binding pro 97.2 0.00033 7.1E-09 76.3 5.0 60 367-426 5-83 (595)
288 PRK04004 translation initiatio 97.2 0.00037 8.1E-09 75.7 5.1 25 366-390 7-31 (586)
289 PLN03126 Elongation factor Tu; 97.2 0.00035 7.5E-09 74.1 4.5 64 363-426 79-157 (478)
290 PRK10512 selenocysteinyl-tRNA- 97.2 0.00048 1E-08 75.2 5.5 60 367-426 2-64 (614)
291 PF00009 GTP_EFTU: Elongation 97.2 0.00041 8.9E-09 64.0 4.3 60 366-425 4-82 (188)
292 PRK05124 cysN sulfate adenylyl 97.1 0.00045 9.7E-09 73.3 4.6 63 363-425 25-119 (474)
293 PRK00007 elongation factor G; 97.1 0.00078 1.7E-08 74.8 6.4 61 366-426 11-88 (693)
294 PRK00049 elongation factor Tu; 97.1 0.00052 1.1E-08 71.2 4.7 62 363-424 10-86 (396)
295 TIGR01394 TypA_BipA GTP-bindin 97.1 0.00056 1.2E-08 74.4 5.0 60 367-426 3-77 (594)
296 TIGR02034 CysN sulfate adenyly 97.0 0.00043 9.4E-09 72.0 3.5 61 366-426 1-93 (406)
297 TIGR01375 soxG sarcosine oxida 97.0 0.0012 2.6E-08 59.2 5.9 75 100-189 75-149 (152)
298 PRK00741 prfC peptide chain re 97.0 0.00075 1.6E-08 72.4 5.4 61 366-426 11-92 (526)
299 PRK13351 elongation factor G; 96.9 0.00074 1.6E-08 75.0 4.4 61 366-426 9-86 (687)
300 cd01888 eIF2_gamma eIF2-gamma 96.9 0.0011 2.4E-08 62.0 4.9 23 366-388 1-23 (203)
301 cd01885 EF2 EF2 (for archaea a 96.9 0.00093 2E-08 63.8 4.3 22 367-388 2-23 (222)
302 TIGR00503 prfC peptide chain r 96.9 0.0013 2.8E-08 70.7 5.9 62 365-426 11-93 (527)
303 TIGR00490 aEF-2 translation el 96.8 0.0015 3.3E-08 72.8 5.2 62 366-427 20-100 (720)
304 cd01882 BMS1 Bms1. Bms1 is an 96.7 0.0025 5.5E-08 60.8 5.8 56 363-423 37-93 (225)
305 PF09439 SRPRB: Signal recogni 96.7 0.00088 1.9E-08 61.8 2.2 56 366-426 4-62 (181)
306 PRK05433 GTP-binding protein L 96.7 0.0016 3.4E-08 71.1 4.5 60 367-426 9-87 (600)
307 PRK14722 flhF flagellar biosyn 96.6 0.0069 1.5E-07 62.1 8.5 28 361-388 133-160 (374)
308 PTZ00141 elongation factor 1- 96.6 0.0018 4E-08 68.1 4.1 63 364-426 6-98 (446)
309 cd04165 GTPBP1_like GTPBP1-lik 96.6 0.002 4.3E-08 61.6 4.0 22 367-388 1-22 (224)
310 COG2229 Predicted GTPase [Gene 96.6 0.0027 6E-08 58.0 4.6 64 364-427 9-82 (187)
311 KOG1487|consensus 96.5 0.0029 6.4E-08 60.8 4.5 66 363-429 56-122 (358)
312 PRK14721 flhF flagellar biosyn 96.4 0.014 3.1E-07 60.8 9.2 27 362-388 188-214 (420)
313 KOG0070|consensus 96.4 0.0058 1.2E-07 55.9 5.4 58 364-425 16-73 (181)
314 PRK09866 hypothetical protein; 96.4 0.023 4.9E-07 61.7 10.6 36 366-401 70-105 (741)
315 TIGR03680 eif2g_arch translati 96.4 0.0023 4.9E-08 66.6 3.0 25 364-388 3-27 (406)
316 PF00350 Dynamin_N: Dynamin fa 96.3 0.0038 8.3E-08 56.0 4.0 25 368-392 1-25 (168)
317 COG0194 Gmk Guanylate kinase [ 96.3 0.0022 4.8E-08 59.0 1.9 53 364-419 3-55 (191)
318 PRK04000 translation initiatio 96.1 0.0036 7.8E-08 65.3 3.1 25 364-388 8-32 (411)
319 TIGR01425 SRP54_euk signal rec 96.1 0.061 1.3E-06 56.2 11.9 22 365-386 100-121 (429)
320 KOG1673|consensus 96.1 0.0039 8.5E-08 55.5 2.5 61 365-426 20-82 (205)
321 KOG3883|consensus 96.0 0.013 2.7E-07 52.2 5.1 62 364-425 8-72 (198)
322 KOG0074|consensus 95.9 0.019 4E-07 50.5 5.7 59 363-425 15-74 (185)
323 KOG0096|consensus 95.8 0.015 3.2E-07 53.5 5.0 63 364-427 9-73 (216)
324 PRK12740 elongation factor G; 95.8 0.0094 2E-07 66.0 4.5 55 371-425 1-72 (668)
325 PRK14737 gmk guanylate kinase; 95.7 0.0068 1.5E-07 56.2 2.5 42 364-405 3-44 (186)
326 KOG3859|consensus 95.7 0.01 2.3E-07 57.6 3.7 60 366-425 43-107 (406)
327 PTZ00416 elongation factor 2; 95.5 0.011 2.4E-07 67.0 3.8 61 366-426 20-105 (836)
328 TIGR03263 guanyl_kin guanylate 95.5 0.0068 1.5E-07 55.2 1.7 25 365-389 1-25 (180)
329 COG1419 FlhF Flagellar GTP-bin 95.4 0.0055 1.2E-07 62.8 1.0 25 364-388 202-226 (407)
330 KOG2486|consensus 95.4 0.019 4.1E-07 56.0 4.5 57 365-424 136-194 (320)
331 COG1116 TauB ABC-type nitrate/ 95.4 0.011 2.4E-07 56.8 2.8 27 363-389 27-53 (248)
332 PRK12727 flagellar biosynthesi 95.3 0.096 2.1E-06 56.0 9.7 28 360-387 345-372 (559)
333 PLN00116 translation elongatio 95.3 0.018 3.9E-07 65.4 4.5 23 366-388 20-42 (843)
334 PRK07560 elongation factor EF- 95.2 0.032 6.9E-07 62.5 6.3 61 366-426 21-100 (731)
335 KOG0071|consensus 95.2 0.042 9E-07 48.3 5.5 76 364-443 16-107 (180)
336 PF00005 ABC_tran: ABC transpo 95.1 0.016 3.6E-07 50.0 2.9 29 362-390 8-36 (137)
337 KOG2929|consensus 95.1 0.059 1.3E-06 53.2 6.9 96 20-120 19-122 (348)
338 COG4917 EutP Ethanolamine util 95.1 0.013 2.9E-07 50.4 2.1 25 366-390 2-26 (148)
339 PLN00043 elongation factor 1-a 95.1 0.02 4.3E-07 60.4 3.9 63 364-426 6-98 (447)
340 PRK00300 gmk guanylate kinase; 95.0 0.018 3.9E-07 53.7 3.1 26 363-388 3-28 (205)
341 PRK14738 gmk guanylate kinase; 94.9 0.02 4.3E-07 53.9 3.1 25 364-388 12-36 (206)
342 cd00071 GMPK Guanosine monopho 94.9 0.021 4.6E-07 50.1 3.0 54 368-423 2-56 (137)
343 COG5256 TEF1 Translation elong 94.8 0.033 7.2E-07 57.1 4.4 64 364-427 6-99 (428)
344 PRK12726 flagellar biosynthesi 94.7 0.16 3.5E-06 52.2 9.2 26 362-387 203-228 (407)
345 COG1136 SalX ABC-type antimicr 94.7 0.023 5E-07 54.2 2.8 28 362-389 28-55 (226)
346 COG3840 ThiQ ABC-type thiamine 94.7 0.021 4.7E-07 52.6 2.4 27 363-389 23-49 (231)
347 KOG0090|consensus 94.5 0.035 7.5E-07 52.2 3.4 56 366-425 39-94 (238)
348 KOG1707|consensus 94.4 0.038 8.2E-07 58.7 4.0 57 363-421 7-64 (625)
349 cd03238 ABC_UvrA The excision 94.4 0.029 6.3E-07 51.5 2.8 27 361-387 17-43 (176)
350 cd03264 ABC_drug_resistance_li 94.4 0.026 5.7E-07 52.9 2.5 26 362-388 23-48 (211)
351 cd01130 VirB11-like_ATPase Typ 94.3 0.026 5.7E-07 52.0 2.4 26 363-388 23-48 (186)
352 COG3839 MalK ABC-type sugar tr 94.3 0.029 6.4E-07 56.7 2.8 28 362-389 26-53 (338)
353 cd03225 ABC_cobalt_CbiO_domain 94.3 0.031 6.7E-07 52.3 2.8 28 362-389 24-51 (211)
354 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.3 0.031 6.8E-07 52.6 2.8 28 362-389 27-54 (218)
355 cd03222 ABC_RNaseL_inhibitor T 94.3 0.03 6.5E-07 51.5 2.6 29 361-389 21-49 (177)
356 cd03261 ABC_Org_Solvent_Resist 94.3 0.032 6.9E-07 53.3 2.9 28 362-389 23-50 (235)
357 TIGR00960 3a0501s02 Type II (G 94.3 0.033 7.2E-07 52.4 2.9 28 362-389 26-53 (216)
358 PF13207 AAA_17: AAA domain; P 94.2 0.03 6.6E-07 47.2 2.4 22 367-388 1-22 (121)
359 PF13555 AAA_29: P-loop contai 94.2 0.038 8.2E-07 41.8 2.6 22 365-386 23-44 (62)
360 cd03226 ABC_cobalt_CbiO_domain 94.2 0.034 7.4E-07 51.9 2.9 28 362-389 23-50 (205)
361 smart00053 DYNc Dynamin, GTPas 94.2 0.11 2.5E-06 50.1 6.5 56 366-422 27-83 (240)
362 COG1120 FepC ABC-type cobalami 94.2 0.033 7.2E-07 54.2 2.8 25 363-387 26-50 (258)
363 COG1126 GlnQ ABC-type polar am 94.1 0.036 7.9E-07 52.3 2.8 27 362-388 25-51 (240)
364 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.1 0.039 8.6E-07 48.7 3.0 28 362-389 23-50 (144)
365 TIGR01166 cbiO cobalt transpor 94.1 0.037 8E-07 51.0 2.9 28 362-389 15-42 (190)
366 TIGR02673 FtsE cell division A 94.1 0.036 7.9E-07 52.0 2.9 28 362-389 25-52 (214)
367 cd03265 ABC_DrrA DrrA is the A 94.1 0.038 8.2E-07 52.2 2.9 27 362-388 23-49 (220)
368 cd03224 ABC_TM1139_LivF_branch 94.1 0.038 8.1E-07 52.1 2.8 28 362-389 23-50 (222)
369 cd03269 ABC_putative_ATPase Th 94.0 0.039 8.4E-07 51.7 2.8 28 362-389 23-50 (210)
370 PRK10078 ribose 1,5-bisphospho 94.0 0.037 7.9E-07 51.0 2.6 24 365-388 2-25 (186)
371 cd03262 ABC_HisP_GlnQ_permease 94.0 0.039 8.5E-07 51.6 2.9 28 362-389 23-50 (213)
372 cd03259 ABC_Carb_Solutes_like 94.0 0.039 8.5E-07 51.8 2.8 27 362-388 23-49 (213)
373 TIGR03608 L_ocin_972_ABC putat 94.0 0.039 8.4E-07 51.4 2.8 28 362-389 21-48 (206)
374 cd03293 ABC_NrtD_SsuB_transpor 94.0 0.039 8.5E-07 52.1 2.8 28 362-389 27-54 (220)
375 cd03216 ABC_Carb_Monos_I This 94.0 0.042 9E-07 49.6 2.9 28 362-389 23-50 (163)
376 TIGR02315 ABC_phnC phosphonate 94.0 0.04 8.7E-07 52.8 2.9 28 362-389 25-52 (243)
377 cd03260 ABC_PstB_phosphate_tra 94.0 0.039 8.4E-07 52.3 2.7 28 362-389 23-50 (227)
378 cd03257 ABC_NikE_OppD_transpor 93.9 0.042 9.1E-07 52.0 2.9 28 362-389 28-55 (228)
379 cd03235 ABC_Metallic_Cations A 93.9 0.043 9.4E-07 51.5 2.9 28 362-389 22-49 (213)
380 cd03263 ABC_subfamily_A The AB 93.9 0.043 9.3E-07 51.7 2.8 28 362-389 25-52 (220)
381 cd03292 ABC_FtsE_transporter F 93.9 0.044 9.5E-07 51.4 2.9 28 362-389 24-51 (214)
382 TIGR02211 LolD_lipo_ex lipopro 93.8 0.044 9.5E-07 51.7 2.8 28 362-389 28-55 (221)
383 KOG0077|consensus 93.8 0.056 1.2E-06 48.8 3.3 57 363-423 18-74 (193)
384 TIGR03499 FlhF flagellar biosy 93.8 0.5 1.1E-05 46.7 10.4 25 363-387 192-216 (282)
385 cd03229 ABC_Class3 This class 93.8 0.047 1E-06 49.9 2.8 27 362-388 23-49 (178)
386 cd03258 ABC_MetN_methionine_tr 93.8 0.045 9.8E-07 52.1 2.9 28 362-389 28-55 (233)
387 PRK15177 Vi polysaccharide exp 93.8 0.046 9.9E-07 51.6 2.8 28 362-389 10-37 (213)
388 COG4525 TauB ABC-type taurine 93.8 0.046 1E-06 51.0 2.7 27 362-388 28-54 (259)
389 cd00820 PEPCK_HprK Phosphoenol 93.7 0.05 1.1E-06 45.8 2.7 25 363-387 13-37 (107)
390 TIGR01978 sufC FeS assembly AT 93.7 0.048 1E-06 52.2 2.9 27 362-388 23-49 (243)
391 cd03256 ABC_PhnC_transporter A 93.7 0.047 1E-06 52.1 2.9 28 362-389 24-51 (241)
392 PRK05703 flhF flagellar biosyn 93.7 0.44 9.5E-06 50.0 10.2 25 363-387 219-243 (424)
393 PRK11248 tauB taurine transpor 93.7 0.048 1E-06 53.0 2.9 28 362-389 24-51 (255)
394 cd03218 ABC_YhbG The ABC trans 93.7 0.048 1E-06 51.8 2.8 28 362-389 23-50 (232)
395 cd03301 ABC_MalK_N The N-termi 93.7 0.049 1.1E-06 51.0 2.8 28 362-389 23-50 (213)
396 cd03219 ABC_Mj1267_LivG_branch 93.7 0.05 1.1E-06 51.9 2.9 27 362-388 23-49 (236)
397 PRK09435 membrane ATPase/prote 93.7 0.12 2.6E-06 52.4 5.7 24 364-387 55-78 (332)
398 PRK11629 lolD lipoprotein tran 93.6 0.049 1.1E-06 51.9 2.8 28 362-389 32-59 (233)
399 PRK13540 cytochrome c biogenes 93.6 0.051 1.1E-06 50.6 2.8 28 362-389 24-51 (200)
400 KOG3886|consensus 93.6 0.019 4.2E-07 54.5 -0.1 60 366-425 5-65 (295)
401 PRK13541 cytochrome c biogenes 93.6 0.051 1.1E-06 50.4 2.8 28 362-389 23-50 (195)
402 PRK14242 phosphate transporter 93.6 0.049 1.1E-06 52.6 2.7 27 362-388 29-55 (253)
403 cd03268 ABC_BcrA_bacitracin_re 93.6 0.052 1.1E-06 50.7 2.8 28 362-389 23-50 (208)
404 cd03215 ABC_Carb_Monos_II This 93.6 0.054 1.2E-06 49.6 2.9 28 362-389 23-50 (182)
405 COG4108 PrfC Peptide chain rel 93.6 0.06 1.3E-06 55.6 3.4 66 366-431 13-99 (528)
406 cd03266 ABC_NatA_sodium_export 93.6 0.053 1.1E-06 51.0 2.8 28 362-389 28-55 (218)
407 TIGR01189 ccmA heme ABC export 93.6 0.053 1.2E-06 50.3 2.8 28 362-389 23-50 (198)
408 cd03214 ABC_Iron-Siderophores_ 93.5 0.055 1.2E-06 49.5 2.9 27 362-388 22-48 (180)
409 TIGR02770 nickel_nikD nickel i 93.5 0.054 1.2E-06 51.6 2.9 28 362-389 9-36 (230)
410 PRK10908 cell division protein 93.5 0.054 1.2E-06 51.2 2.9 28 362-389 25-52 (222)
411 cd03233 ABC_PDR_domain1 The pl 93.5 0.055 1.2E-06 50.6 2.9 28 362-389 30-57 (202)
412 cd03254 ABCC_Glucan_exporter_l 93.5 0.054 1.2E-06 51.4 2.9 28 362-389 26-53 (229)
413 TIGR02322 phosphon_PhnN phosph 93.5 0.048 1E-06 49.6 2.3 23 366-388 2-24 (179)
414 cd03231 ABC_CcmA_heme_exporter 93.5 0.056 1.2E-06 50.4 2.8 28 362-389 23-50 (201)
415 TIGR03410 urea_trans_UrtE urea 93.5 0.057 1.2E-06 51.3 2.9 28 362-389 23-50 (230)
416 PRK13539 cytochrome c biogenes 93.5 0.056 1.2E-06 50.6 2.8 28 362-389 25-52 (207)
417 cd03296 ABC_CysA_sulfate_impor 93.5 0.055 1.2E-06 51.8 2.9 28 362-389 25-52 (239)
418 PRK11124 artP arginine transpo 93.5 0.055 1.2E-06 51.9 2.8 28 362-389 25-52 (242)
419 PRK06995 flhF flagellar biosyn 93.5 0.18 3.8E-06 53.6 6.8 26 363-388 254-279 (484)
420 PRK10584 putative ABC transpor 93.4 0.056 1.2E-06 51.3 2.8 28 362-389 33-60 (228)
421 PRK14247 phosphate ABC transpo 93.4 0.055 1.2E-06 52.1 2.8 28 362-389 26-53 (250)
422 TIGR03864 PQQ_ABC_ATP ABC tran 93.4 0.056 1.2E-06 51.6 2.9 28 362-389 24-51 (236)
423 PRK10895 lipopolysaccharide AB 93.4 0.057 1.2E-06 51.7 2.9 28 362-389 26-53 (241)
424 cd03247 ABCC_cytochrome_bd The 93.4 0.059 1.3E-06 49.2 2.9 28 362-389 25-52 (178)
425 cd03230 ABC_DR_subfamily_A Thi 93.4 0.061 1.3E-06 48.9 2.9 28 362-389 23-50 (173)
426 PRK11264 putative amino-acid A 93.4 0.058 1.3E-06 51.9 2.8 28 362-389 26-53 (250)
427 COG4559 ABC-type hemin transpo 93.3 0.063 1.4E-06 50.7 2.8 28 362-389 24-51 (259)
428 cd03237 ABC_RNaseL_inhibitor_d 93.3 0.061 1.3E-06 52.0 2.9 28 362-389 22-49 (246)
429 smart00382 AAA ATPases associa 93.3 0.064 1.4E-06 45.0 2.7 25 365-389 2-26 (148)
430 cd03295 ABC_OpuCA_Osmoprotecti 93.3 0.062 1.3E-06 51.6 2.9 28 362-389 24-51 (242)
431 cd03298 ABC_ThiQ_thiamine_tran 93.3 0.063 1.4E-06 50.3 2.8 28 362-389 21-48 (211)
432 COG0410 LivF ABC-type branched 93.3 0.064 1.4E-06 51.1 2.8 26 363-388 27-52 (237)
433 cd03223 ABCD_peroxisomal_ALDP 93.3 0.066 1.4E-06 48.4 2.9 28 362-389 24-51 (166)
434 cd03217 ABC_FeS_Assembly ABC-t 93.2 0.066 1.4E-06 49.9 2.9 27 362-388 23-49 (200)
435 TIGR00235 udk uridine kinase. 93.2 0.051 1.1E-06 51.0 2.2 25 364-388 5-29 (207)
436 PRK13638 cbiO cobalt transport 93.2 0.065 1.4E-06 52.5 2.9 28 362-389 24-51 (271)
437 PRK10744 pstB phosphate transp 93.2 0.063 1.4E-06 52.2 2.8 28 362-389 36-63 (260)
438 TIGR02868 CydC thiol reductant 93.2 0.059 1.3E-06 57.9 2.9 27 362-388 358-384 (529)
439 TIGR02323 CP_lyasePhnK phospho 93.2 0.064 1.4E-06 51.8 2.8 28 362-389 26-53 (253)
440 PRK14239 phosphate transporter 93.2 0.065 1.4E-06 51.7 2.9 27 362-388 28-54 (252)
441 cd03294 ABC_Pro_Gly_Bertaine T 93.2 0.064 1.4E-06 52.5 2.9 28 362-389 47-74 (269)
442 PRK10575 iron-hydroxamate tran 93.2 0.067 1.4E-06 52.2 3.0 28 362-389 34-61 (265)
443 KOG0076|consensus 93.2 0.072 1.6E-06 48.5 2.8 61 364-425 16-81 (197)
444 PRK11300 livG leucine/isoleuci 93.1 0.065 1.4E-06 51.7 2.8 27 362-388 28-54 (255)
445 cd03234 ABCG_White The White s 93.1 0.065 1.4E-06 50.8 2.8 28 362-389 30-57 (226)
446 PRK13543 cytochrome c biogenes 93.1 0.068 1.5E-06 50.4 2.8 28 362-389 34-61 (214)
447 PRK15056 manganese/iron transp 93.1 0.067 1.4E-06 52.4 2.9 28 362-389 30-57 (272)
448 PRK13645 cbiO cobalt transport 93.1 0.065 1.4E-06 53.0 2.8 28 362-389 34-61 (289)
449 PRK13538 cytochrome c biogenes 93.1 0.068 1.5E-06 49.9 2.8 28 362-389 24-51 (204)
450 PRK11247 ssuB aliphatic sulfon 93.1 0.067 1.4E-06 52.1 2.9 28 362-389 35-62 (257)
451 PRK10247 putative ABC transpor 93.1 0.067 1.5E-06 50.8 2.8 27 362-388 30-56 (225)
452 PRK14267 phosphate ABC transpo 93.1 0.066 1.4E-06 51.7 2.8 28 362-389 27-54 (253)
453 PRK14262 phosphate ABC transpo 93.1 0.067 1.4E-06 51.6 2.8 27 362-388 26-52 (250)
454 PRK11701 phnK phosphonate C-P 93.1 0.066 1.4E-06 51.9 2.8 28 362-389 29-56 (258)
455 PRK14250 phosphate ABC transpo 93.1 0.068 1.5E-06 51.3 2.9 27 362-388 26-52 (241)
456 PRK14273 phosphate ABC transpo 93.1 0.067 1.4E-06 51.7 2.8 28 362-389 30-57 (254)
457 TIGR03740 galliderm_ABC gallid 93.1 0.069 1.5E-06 50.5 2.8 28 362-389 23-50 (223)
458 cd03236 ABC_RNaseL_inhibitor_d 93.1 0.069 1.5E-06 52.0 2.9 28 362-389 23-50 (255)
459 TIGR03005 ectoine_ehuA ectoine 93.1 0.07 1.5E-06 51.5 2.9 28 362-389 23-50 (252)
460 TIGR01184 ntrCD nitrate transp 93.0 0.07 1.5E-06 50.9 2.8 28 362-389 8-35 (230)
461 TIGR03411 urea_trans_UrtD urea 93.0 0.07 1.5E-06 51.1 2.9 28 362-389 25-52 (242)
462 TIGR00972 3a0107s01c2 phosphat 93.0 0.071 1.5E-06 51.3 2.9 28 362-389 24-51 (247)
463 COG1117 PstB ABC-type phosphat 93.0 0.07 1.5E-06 50.4 2.7 24 363-386 31-54 (253)
464 cd03245 ABCC_bacteriocin_expor 93.0 0.072 1.6E-06 50.2 2.8 28 362-389 27-54 (220)
465 cd03369 ABCC_NFT1 Domain 2 of 93.0 0.072 1.6E-06 49.8 2.8 27 362-388 31-57 (207)
466 COG4988 CydD ABC-type transpor 93.0 0.067 1.5E-06 57.1 2.8 27 363-389 345-371 (559)
467 PRK13649 cbiO cobalt transport 93.0 0.071 1.5E-06 52.4 2.9 28 362-389 30-57 (280)
468 cd03232 ABC_PDR_domain2 The pl 93.0 0.073 1.6E-06 49.3 2.8 27 362-388 30-56 (192)
469 PRK09544 znuC high-affinity zi 93.0 0.072 1.6E-06 51.7 2.9 28 362-389 27-54 (251)
470 TIGR02324 CP_lyasePhnL phospho 93.0 0.074 1.6E-06 50.3 2.9 28 362-389 31-58 (224)
471 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 93.0 0.075 1.6E-06 50.5 2.9 27 362-388 45-71 (224)
472 PRK14241 phosphate transporter 93.0 0.07 1.5E-06 51.7 2.8 28 362-389 27-54 (258)
473 COG0411 LivG ABC-type branched 93.0 0.04 8.7E-07 52.8 1.0 27 362-388 27-53 (250)
474 PRK14235 phosphate transporter 93.0 0.068 1.5E-06 52.2 2.7 27 362-388 42-68 (267)
475 PRK15112 antimicrobial peptide 93.0 0.071 1.5E-06 52.1 2.8 28 362-389 36-63 (267)
476 TIGR01188 drrA daunorubicin re 93.0 0.072 1.6E-06 53.1 2.9 28 362-389 16-43 (302)
477 COG3638 ABC-type phosphate/pho 92.9 0.075 1.6E-06 50.8 2.8 26 362-387 27-52 (258)
478 PRK14259 phosphate ABC transpo 92.9 0.074 1.6E-06 52.1 2.8 27 362-388 36-62 (269)
479 cd03249 ABC_MTABC3_MDL1_MDL2 M 92.9 0.074 1.6E-06 50.8 2.8 28 362-389 26-53 (238)
480 PRK14269 phosphate ABC transpo 92.9 0.074 1.6E-06 51.2 2.8 27 362-388 25-51 (246)
481 PRK13641 cbiO cobalt transport 92.9 0.073 1.6E-06 52.6 2.8 28 362-389 30-57 (287)
482 PRK14274 phosphate ABC transpo 92.9 0.07 1.5E-06 51.8 2.6 27 362-388 35-61 (259)
483 PF13671 AAA_33: AAA domain; P 92.9 0.064 1.4E-06 46.5 2.2 20 368-387 2-21 (143)
484 PRK13547 hmuV hemin importer A 92.9 0.077 1.7E-06 52.1 2.9 28 362-389 24-51 (272)
485 PRK13646 cbiO cobalt transport 92.9 0.074 1.6E-06 52.6 2.8 28 362-389 30-57 (286)
486 PRK09580 sufC cysteine desulfu 92.9 0.079 1.7E-06 50.9 2.9 27 362-388 24-50 (248)
487 cd03253 ABCC_ATM1_transporter 92.9 0.076 1.6E-06 50.6 2.8 28 362-389 24-51 (236)
488 PRK14240 phosphate transporter 92.9 0.076 1.6E-06 51.2 2.8 27 362-388 26-52 (250)
489 CHL00131 ycf16 sulfate ABC tra 92.8 0.08 1.7E-06 51.0 2.9 27 362-388 30-56 (252)
490 PRK13648 cbiO cobalt transport 92.8 0.077 1.7E-06 51.9 2.8 28 362-389 32-59 (269)
491 PRK13632 cbiO cobalt transport 92.8 0.077 1.7E-06 52.0 2.8 28 362-389 32-59 (271)
492 TIGR03771 anch_rpt_ABC anchore 92.8 0.078 1.7E-06 50.3 2.8 28 362-389 3-30 (223)
493 cd03267 ABC_NatA_like Similar 92.8 0.079 1.7E-06 50.7 2.9 28 362-389 44-71 (236)
494 TIGR01288 nodI ATP-binding ABC 92.8 0.076 1.7E-06 52.9 2.8 28 362-389 27-54 (303)
495 TIGR01277 thiQ thiamine ABC tr 92.8 0.079 1.7E-06 49.8 2.8 29 361-389 20-48 (213)
496 PRK11231 fecE iron-dicitrate t 92.8 0.08 1.7E-06 51.3 2.9 27 362-388 25-51 (255)
497 PRK09493 glnQ glutamine ABC tr 92.8 0.08 1.7E-06 50.7 2.9 28 362-389 24-51 (240)
498 PRK14248 phosphate ABC transpo 92.8 0.075 1.6E-06 51.9 2.7 27 362-388 44-70 (268)
499 PLN02772 guanylate kinase 92.8 0.092 2E-06 54.1 3.4 53 364-418 134-187 (398)
500 cd03246 ABCC_Protease_Secretio 92.8 0.08 1.7E-06 48.1 2.7 28 362-389 25-52 (173)
No 1
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=100.00 E-value=2.6e-75 Score=588.55 Aligned_cols=296 Identities=47% Similarity=0.722 Sum_probs=272.0
Q ss_pred CCCCCcEEEEccCCCCceEEEEEEecccHHHHHHHhcCCCCCCCCCCceeEEeeeecCCCCceecceEEEeecccccCcc
Q psy1007 24 LAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPRHGKCGV 103 (445)
Q Consensus 24 ~~~~dtI~A~at~~g~~ai~viRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~iD~~i~~~~~~~~~~gi 103 (445)
+...|||+|+|||+|+|||||||+|||+|+.+++++|++ .+.++||+++|+++.|+
T Consensus 1 ~~~~dTI~AiaTa~g~~aI~IvRiSGp~a~~ia~~i~~~--~~~~~~r~a~y~~i~d~---------------------- 56 (454)
T COG0486 1 MMMFDTIAAIATAPGEGAIGIVRISGPDALEIAQKLFGG--LKLPKPRTAHYGHIKDE---------------------- 56 (454)
T ss_pred CCCCCcEEEEccCCCCceEEEEEecCHhHHHHHHHHhCC--CCCCCCcEEEEEEEEcC----------------------
Confidence 356789999999999999999999999999999999984 35667777777776662
Q ss_pred eEeeccCCChHHHhhhhccCCCCCCCCCeEEEeeeeecCCCCeeecCceeeecCCCCCcCCCceeEEEecCcHHHHHHHH
Q psy1007 104 SVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAIL 183 (445)
Q Consensus 104 avIrisGp~a~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~~f~~p~syTGEd~~Ei~~hg~~~v~~~i~ 183 (445)
+++.+|+++++||++|+||||||++|||||||++|+++++
T Consensus 57 ----------------------------------------~~~~iDe~lvl~f~aP~SFTGEDvvEi~~HGg~~v~~~iL 96 (454)
T COG0486 57 ----------------------------------------NGEIIDEVLVLYFKAPNSFTGEDVVEIQCHGGPVVVNLIL 96 (454)
T ss_pred ----------------------------------------CCcEeeeeeEEEEeCCCCcccccEEEEEcCCCHHHHHHHH
Confidence 3678899999999999999999999999999999999999
Q ss_pred HHHhcCCCcccccCCcccchhhhccccchhhhhhHHHHHHcccHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccc
Q psy1007 184 GALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYI 263 (445)
Q Consensus 184 ~~l~~~~g~r~a~~Gef~~ra~~n~k~dl~~ae~~~~li~A~~~~~~~~al~~~~g~l~~~l~~~~~~l~~~~a~iE~~I 263 (445)
+.|++. |+|+|+|||||+|||+||||||+|||++.||+.|+|+.+++.|+.++.|.+++.+..|++.+...++++|+.|
T Consensus 97 ~~~l~~-GaR~AepGEFs~RAFLNgK~DLtqAEai~dLI~A~te~a~r~A~~~l~G~ls~~i~~lr~~li~~~a~vEa~I 175 (454)
T COG0486 97 ELLLKL-GARLAEPGEFSKRAFLNGKLDLTQAEAIADLIDAKTEQAARIALRQLQGALSQLINELREALLELLAQVEANI 175 (454)
T ss_pred HHHHHc-CCeecCCCcchHHHHhcCCccHHHHHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHheEeC
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCeEEEeeeccccccCCChhHHHHHHHHHHHHHHHHh
Q psy1007 264 DFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQ 343 (445)
Q Consensus 264 dfse~e~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~g~~~~~gi~~vIvl~k~e~~~Dl~~~~~~~~~~l~~~~~~~~~ 343 (445)
||++++ ++........+.+..+..+|.+++.
T Consensus 176 Dfpeed-i~~~~~~~i~~~l~~~~~~l~~ll~------------------------------------------------ 206 (454)
T COG0486 176 DFPEED-IEELVLEKIREKLEELIAELDELLA------------------------------------------------ 206 (454)
T ss_pred CCCccc-ccchhHHHHHHHHHHHHHHHHHHHH------------------------------------------------
Confidence 999984 6666777777777777777776666
Q ss_pred hccCcceeeecccccccccccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCC
Q psy1007 344 LHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGL 423 (445)
Q Consensus 344 ~~~~~~~~~~~s~~~~~~~~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~ 423 (445)
++.+++.+++|++++++|.||||||||+|+|++++.++|++++|||||+....+.++|.++.++||||+
T Consensus 207 -----------~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGi 275 (454)
T COG0486 207 -----------TAKQGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGI 275 (454)
T ss_pred -----------hhhhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCc
Confidence 556778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCcccHHHHHHHHHhhhC
Q psy1007 424 RTTTSDIIETEGNLLEKNNQQR 445 (445)
Q Consensus 424 ~~~~~~~~e~~~i~~~~~~~~~ 445 (445)
+ .+.|.+|++|++++++.+++
T Consensus 276 R-et~d~VE~iGIeRs~~~i~~ 296 (454)
T COG0486 276 R-ETDDVVERIGIERAKKAIEE 296 (454)
T ss_pred c-cCccHHHHHHHHHHHHHHHh
Confidence 9 77899999999999998763
No 2
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=100.00 E-value=1.4e-65 Score=534.85 Aligned_cols=291 Identities=48% Similarity=0.716 Sum_probs=250.3
Q ss_pred CCCCcEEEEccCCCCceEEEEEEecccHHHHHHHhcCCCCCCCCCCceeEEeeeecCCCCceecceEEEeecccccCcce
Q psy1007 25 AIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPRHGKCGVS 104 (445)
Q Consensus 25 ~~~dtI~A~at~~g~~ai~viRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~iD~~i~~~~~~~~~~gia 104 (445)
..+|||||+|||+|+|||||||||||+|.++++++|+. +.++||+++|+++
T Consensus 2 ~~~dTI~A~aT~~g~~~i~viRiSG~~a~~~~~~~~~~---~~~~~~~~~~~~~-------------------------- 52 (449)
T PRK05291 2 MMNDTIAAIATPPGRGGIGIIRISGPDALEIAQKLFGK---KLPKPRTAHYGHI-------------------------- 52 (449)
T ss_pred CCCCcEEEeccCCcCceEEEEEEEhHHHHHHHHHHhCC---CCCCCcEEEEEEE--------------------------
Confidence 35699999999999999999999999999999999962 2344555555554
Q ss_pred EeeccCCChHHHhhhhccCCCCCCCCCeEEEeeeeecCCCCeeecCceeeecCCCCCcCCCceeEEEecCcHHHHHHHHH
Q psy1007 105 VIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILG 184 (445)
Q Consensus 105 vIrisGp~a~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~~f~~p~syTGEd~~Ei~~hg~~~v~~~i~~ 184 (445)
+|. ++++|+++++||++|+||||||++|||||||++|++++++
T Consensus 53 -----------------------------------~~~--~~~iD~~l~~~f~~P~S~TGEd~vEi~~HG~~~v~~~il~ 95 (449)
T PRK05291 53 -----------------------------------RDP--GEVIDEVLVLYFPAPNSFTGEDVVEIQCHGGPAVLNLILE 95 (449)
T ss_pred -----------------------------------ecC--CcccceEEEEEecCCCCccCCcEEEEECCCCHHHHHHHHH
Confidence 442 5678999999999999999999999999999999999999
Q ss_pred HHhcCCCcccccCCcccchhhhccccchhhhhhHHHHHHcccHHHHHHHHHhccchHHHHHHHHHHHHHHHHhccccccc
Q psy1007 185 ALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYID 264 (445)
Q Consensus 185 ~l~~~~g~r~a~~Gef~~ra~~n~k~dl~~ae~~~~li~A~~~~~~~~al~~~~g~l~~~l~~~~~~l~~~~a~iE~~Id 264 (445)
.|.+. |+|+|+|||||+|||+||||||+|||++.+|+.|++..+++.|+.++.|.+++.+.+|++.|...++.+|+.||
T Consensus 96 ~l~~~-g~r~A~pGEFt~RAflngk~dL~qaEai~~li~a~t~~~~~~al~~l~G~l~~~~~~~r~~l~~~~a~iea~iD 174 (449)
T PRK05291 96 LLLAL-GARLAEPGEFTKRAFLNGKLDLTQAEAIADLIDAKTEAAARLALRQLQGALSKLINELREELLELLALVEAAID 174 (449)
T ss_pred HHHHc-CCEEccCccchHHHHhcCCcCHHHHHHHHHHHhCCCHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHheEEcc
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCeEEEeeeccccccCCChhHHHHHHHHHHHHHHHHhh
Q psy1007 265 FSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQL 344 (445)
Q Consensus 265 fse~e~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~g~~~~~gi~~vIvl~k~e~~~Dl~~~~~~~~~~l~~~~~~~~~~ 344 (445)
|++++ ...........++..+..+|.++..
T Consensus 175 f~ee~-~~~~~~~~i~~~i~~l~~~l~~l~~------------------------------------------------- 204 (449)
T PRK05291 175 FPEED-IEFLSDEKILEKLEELIAELEALLA------------------------------------------------- 204 (449)
T ss_pred CCCCC-cccccHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
Confidence 99976 3333444555556666666655554
Q ss_pred ccCcceeeecccccccccccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCC
Q psy1007 345 HGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424 (445)
Q Consensus 345 ~~~~~~~~~~s~~~~~~~~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~ 424 (445)
+...++.++++++++++|+||||||||+|+|++.+...+++.++||+++....+.++|.++.+|||||++
T Consensus 205 ----------~~~~~~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~ 274 (449)
T PRK05291 205 ----------SARQGEILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIR 274 (449)
T ss_pred ----------HHHHHHHhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCC
Confidence 1123344567899999999999999999999998877778999999999999999999999999999998
Q ss_pred cCCCCcccHHHHHHHHHhh
Q psy1007 425 TTTSDIIETEGNLLEKNNQ 443 (445)
Q Consensus 425 ~~~~~~~e~~~i~~~~~~~ 443 (445)
+ ..+.++..++.+++..+
T Consensus 275 ~-~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 275 E-TDDEVEKIGIERSREAI 292 (449)
T ss_pred C-CccHHHHHHHHHHHHHH
Confidence 4 55677888888776654
No 3
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=100.00 E-value=6.1e-63 Score=512.72 Aligned_cols=280 Identities=37% Similarity=0.562 Sum_probs=239.1
Q ss_pred ccCCCCceEEEEEEecccHHHHHHHhcCCCCCCCCCCceeEEeeeecCCCCceecceEEEeecccccCcceEeeccCCCh
Q psy1007 34 SSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPRHGKCGVSVIRVSGPDT 113 (445)
Q Consensus 34 at~~g~~ai~viRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~iD~~i~~~~~~~~~~giavIrisGp~a 113 (445)
|||+|+|||||||||||+|.++++++|+.+ ..++||+++|++++|
T Consensus 1 aT~~g~~~i~viRiSG~~a~~i~~~~~~~~--~~~~~~~~~~~~~~~--------------------------------- 45 (442)
T TIGR00450 1 ATPPFNSAIHIIRLSGPDSLSILKKITNKL--NTASGMRIQYGHIID--------------------------------- 45 (442)
T ss_pred CCCCCCceEEEEEeehHHHHHHHHHHhCCC--CCCCCcEEEEEEEEC---------------------------------
Confidence 799999999999999999999999999521 123455555555554
Q ss_pred HHHhhhhccCCCCCCCCCeEEEeeeeecCCCCeeecCceeeecCCCCCcCCCceeEEEecCcHHHHHHHHHHHhcCCCcc
Q psy1007 114 LNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLR 193 (445)
Q Consensus 114 ~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~~f~~p~syTGEd~~Ei~~hg~~~v~~~i~~~l~~~~g~r 193 (445)
+ .++++|+++++||++|+||||||++|||||||++|++++++.|++. |+|
T Consensus 46 ----------------------------~-~~~~iD~~l~~~f~~P~S~TGEDvvEi~~HGg~~v~~~il~~l~~~-g~R 95 (442)
T TIGR00450 46 ----------------------------S-NNKCKDDELLFKFVAPNSYTGEDVIEIQCHGSMLIVQEILQLCLKS-GAR 95 (442)
T ss_pred ----------------------------C-CCCEeeeEEEEEEcCCCCcccccEEEEECCCCHHHHHHHHHHHHHc-CCe
Confidence 3 2667899999999999999999999999999999999999999998 999
Q ss_pred cccCCcccchhhhccccchhhhhhHHHHHHcccHHHHHHHHHhccchHHHHHHHHHHHHHHHHhccccccccCCCcccch
Q psy1007 194 PAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIED 273 (445)
Q Consensus 194 ~a~~Gef~~ra~~n~k~dl~~ae~~~~li~A~~~~~~~~al~~~~g~l~~~l~~~~~~l~~~~a~iE~~Idfse~e~~~~ 273 (445)
+|+|||||+|||+||||||+|||++.||+.|+|..+++.|+.++.|.+++.+.+|++.|..+++.+|+.|||++++. ..
T Consensus 96 ~A~pGEFT~RAflNGk~DL~qaEav~dlI~a~t~~~~~~A~~~l~G~ls~~~~~~r~~l~~~~a~iea~iDf~ee~~-~~ 174 (442)
T TIGR00450 96 LAQPGEFTQRAFLNGKMDLTQAEAINELILAPNNKVKDIALNKLAGELDQKIEAIRKSLLQLLAQVEVNIDYEEDDD-EQ 174 (442)
T ss_pred EcCCchhhHHHHhcCCccHHHHHHHHHHHhCCCHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHeeEECCcCCCCc-cH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999752 21
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCeEEEeeeccccccCCChhHHHHHHHHHHHHHHHHhhccCcceeee
Q psy1007 274 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIE 353 (445)
Q Consensus 274 ~~~~~~~~~l~~l~~~L~~~~~~~~~~g~~~~~gi~~vIvl~k~e~~~Dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 353 (445)
......+..+...|.+++.
T Consensus 175 ---~~~~~~l~~~~~~l~~ll~---------------------------------------------------------- 193 (442)
T TIGR00450 175 ---DSLNQLLLSIIAELKDILN---------------------------------------------------------- 193 (442)
T ss_pred ---HHHHHHHHHHHHHHHHHHH----------------------------------------------------------
Confidence 2443445555555544444
Q ss_pred cccccccccccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCCCCcccH
Q psy1007 354 LSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIET 433 (445)
Q Consensus 354 ~s~~~~~~~~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~~~~e~ 433 (445)
+. ..+.++++++++++|+||||||||+|+|++.....++++++||+++....+.++|.++.+|||||+++ ..+.+|+
T Consensus 194 -~~-~~~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~-~~~~ie~ 270 (442)
T TIGR00450 194 -SY-KLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIRE-HADFVER 270 (442)
T ss_pred -HH-HHHHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCccc-chhHHHH
Confidence 11 22445688999999999999999999999988777899999999999999999999999999999984 4466788
Q ss_pred HHHHHHHHhh
Q psy1007 434 EGNLLEKNNQ 443 (445)
Q Consensus 434 ~~i~~~~~~~ 443 (445)
.++.+++..+
T Consensus 271 ~gi~~~~~~~ 280 (442)
T TIGR00450 271 LGIEKSFKAI 280 (442)
T ss_pred HHHHHHHHHH
Confidence 8887776654
No 4
>KOG1191|consensus
Probab=100.00 E-value=1.8e-52 Score=421.06 Aligned_cols=303 Identities=44% Similarity=0.670 Sum_probs=262.1
Q ss_pred cEEEEccCCC-CceEEEEEEecccHHHHHHHhcCCCCCCCCCCceeEEeeeecCCCCceecceEEEeecccccCcceEee
Q psy1007 29 TIFALSSGHG-KCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPRHGKCGVSVIR 107 (445)
Q Consensus 29 tI~A~at~~g-~~ai~viRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~iD~~i~~~~~~~~~~giavIr 107 (445)
||||++||.| .+||+|+|+|||++..++++|+.. ...++++.+-++.++|+..
T Consensus 43 Ti~alst~~~~~~aiai~R~sG~~a~kv~r~L~~s--~~v~~~~~~~~~~l~~~~~------------------------ 96 (531)
T KOG1191|consen 43 TIFALSTGIGLTSAIAIFRISGPDATKVARRLLRS--VMVPKRRNAGLRALYNPEV------------------------ 96 (531)
T ss_pred eEEEeecCCCCCcceeEEEecCchHHHHHHHhccc--cccCCCCccccccccChhh------------------------
Confidence 9999999999 999999999999999999999973 2478888898888888520
Q ss_pred ccCCChHHHhhhhccCCCCCCCCCeEEEeeeeecCCCCeeecCceeeecCCCCCcCCCceeEEEecCcHHHHHHHHHHHh
Q psy1007 108 VSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALT 187 (445)
Q Consensus 108 isGp~a~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~~f~~p~syTGEd~~Ei~~hg~~~v~~~i~~~l~ 187 (445)
+.+ -.| ..+.++|+.+.+||++|.||||||++|+||||+++++..++.++.
T Consensus 97 -------------------------r~~---~~~-e~~v~~D~~l~l~~~gp~sFtgeD~~el~~hgs~avv~~~l~a~~ 147 (531)
T KOG1191|consen 97 -------------------------RVY---VVD-EDGVTRDRALGLYFLGPQSFTGEDVVELQTHGSSAVVVGVLTALG 147 (531)
T ss_pred -------------------------ccc---ccC-CCCcchhhhhhccccCCceeeeeeeEEEEEecCccchhhHHHHhh
Confidence 111 111 125589999999999999999999999999999999999999998
Q ss_pred --cCCCcccccCCcccchhhhccccchhhhhhHHHHHHcccHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccccc
Q psy1007 188 --KLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDF 265 (445)
Q Consensus 188 --~~~g~r~a~~Gef~~ra~~n~k~dl~~ae~~~~li~A~~~~~~~~al~~~~g~l~~~l~~~~~~l~~~~a~iE~~Idf 265 (445)
..+|+|+|+|||||+|||+|||+||+|+|.+.++|.|+++.|++.|+.+..|......-.|+..+...++.+|+.+||
T Consensus 148 ~sg~~~ir~a~~geft~Raf~ngk~~Ltq~eg~~~lI~a~t~~q~~~Al~~v~g~~~~l~~~~r~~lIe~~a~l~a~idf 227 (531)
T KOG1191|consen 148 ASGIPGIRLAEPGEFTRRAFLNGKLDLTQAEGIIDLIVAETESQRRAALDEVAGEALALCFGWRKILIEALAGLEARIDF 227 (531)
T ss_pred hccCCCccccCchhhhhhhhhccccchhhhcChhhhhhhhhHhhhhhhhhhhcchhHHhhhhHHHHHHHHHhccceeech
Confidence 467999999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCeEEEeeeccccccCCChhHHHHHHHHHHHHHHHHhhc
Q psy1007 266 SEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLH 345 (445)
Q Consensus 266 se~e~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~g~~~~~gi~~vIvl~k~e~~~Dl~~~~~~~~~~l~~~~~~~~~~~ 345 (445)
.++.|+.+.........+..+.+++..++.
T Consensus 228 ~e~~~l~~~~t~~~~~~~~~l~d~v~s~l~-------------------------------------------------- 257 (531)
T KOG1191|consen 228 EEERPLEEIETVEIFIESLSLLDDVLSHLN-------------------------------------------------- 257 (531)
T ss_pred hhcCchhhccchhhhhHHHHHHHHHHHHHH--------------------------------------------------
Confidence 998765433333322233334444444444
Q ss_pred cCcceeeecccccccccccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 346 GSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 346 ~~~~~~~~~s~~~~~~~~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
.+...+.++.|++++++|+||||||||+|+|+.++..+|++.+|||||.....++++|.+|.|+||||+++
T Consensus 258 ---------~~~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe 328 (531)
T KOG1191|consen 258 ---------KADEIERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE 328 (531)
T ss_pred ---------hhhhHHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccc
Confidence 22234566789999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcccHHHHHHHHHhhhC
Q psy1007 426 TTSDIIETEGNLLEKNNQQR 445 (445)
Q Consensus 426 ~~~~~~e~~~i~~~~~~~~~ 445 (445)
.+.+.+|++|+.+|+..+++
T Consensus 329 ~~~~~iE~~gI~rA~k~~~~ 348 (531)
T KOG1191|consen 329 ESNDGIEALGIERARKRIER 348 (531)
T ss_pred ccCChhHHHhHHHHHHHHhh
Confidence 78899999999999998864
No 5
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP. TrmE is homologous to the tetrahydrofolate-binding domain of N,N-dimethylglycine oxidase and indeed binds formyl-tetrahydrofolate. TrmE actively participates in the formylation reaction of uridine and regulates the ensuing hydrogenation reaction of a Schiff's base intermediate. This B chain is the N-terminal portion of the protein consisting of five beta-strands and three alpha helices and is necessary for mediating dimer formation within the protein []. ; PDB: 1XZQ_B 1XZP_A 3GEE_A 3GEI_B 3GEH_A.
Probab=100.00 E-value=1.8e-41 Score=285.12 Aligned_cols=114 Identities=48% Similarity=0.769 Sum_probs=97.9
Q ss_pred cEEEEccCCCCceEEEEEEecccHHHHHHHhcCCCCCCCCCCceeEEeeeecCCCCceecceEEEeecccccCcceEeec
Q psy1007 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPRHGKCGVSVIRV 108 (445)
Q Consensus 29 tI~A~at~~g~~ai~viRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~iD~~i~~~~~~~~~~giavIri 108 (445)
||+|+|||+|+|||+|||||||+|++++++++. +.++||+++|++++|.
T Consensus 1 TI~AlaT~~g~~aiaiIRiSG~~a~~i~~~~~~----~~~~~r~~~~~~~~~~--------------------------- 49 (114)
T PF10396_consen 1 TIAALATPPGRSAIAIIRISGPDALEIAQKLFG----KSPKPRRAYYGTIYDE--------------------------- 49 (114)
T ss_dssp -EEEE-S-SSC-SEEEEEEESTTHHHHHHTTES----SSTTTTEEEEEEEECS---------------------------
T ss_pred CEEEECCCCCCceEEEEEeEcHHHHHHHHHHhC----ccccCcEEEEEEEEcC---------------------------
Confidence 899999999999999999999999999999995 4666777777776652
Q ss_pred cCCChHHHhhhhccCCCCCCCCCeEEEeeeeecCCCCeeecCceeeecCCCCCcCCCceeEEEecCcHHHHHHHHHHHhc
Q psy1007 109 SGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTK 188 (445)
Q Consensus 109 sGp~a~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~~f~~p~syTGEd~~Ei~~hg~~~v~~~i~~~l~~ 188 (445)
+++.+|+++++||++|+||||||++|||||||+++++++++.|.+
T Consensus 50 -----------------------------------~~~~iDe~lv~~f~~P~SyTGEd~vEi~~HGg~~v~~~il~~l~~ 94 (114)
T PF10396_consen 50 -----------------------------------DGEPIDEVLVLYFPAPRSYTGEDVVEIHCHGGPAVVRRILEALLK 94 (114)
T ss_dssp -----------------------------------STCEEEEEEEEEEBTTCSSSSSEEEEEEEESSHHHHHHHHHHHHH
T ss_pred -----------------------------------CCccccceeEEeecCCCcccCCCEEEEEcCCCHHHHHHHHHHHHH
Confidence 266788899999999999999999999999999999999999999
Q ss_pred CCCcccccCCcccchhhhccc
Q psy1007 189 LPGLRPAEPGEFSKRAFFNNK 209 (445)
Q Consensus 189 ~~g~r~a~~Gef~~ra~~n~k 209 (445)
. |+|+|+|||||+|||+|||
T Consensus 95 ~-G~R~A~pGEFT~RAflNGK 114 (114)
T PF10396_consen 95 A-GARLAEPGEFTRRAFLNGK 114 (114)
T ss_dssp T-T-EE--TTHHHHHHHHTTS
T ss_pred c-CceEcCCchhhHHHHhcCC
Confidence 9 9999999999999999997
No 6
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=4e-21 Score=187.01 Aligned_cols=172 Identities=26% Similarity=0.290 Sum_probs=140.0
Q ss_pred chHHHHHHHHHHHHHHHHhccc-cccccCCCcc-cchhhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCeEEEeeec
Q psy1007 239 GNLKQLYSEWRQLILESLASVE-AYIDFSEDEI-IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLAS 316 (445)
Q Consensus 239 g~l~~~l~~~~~~l~~~~a~iE-~~Idfse~e~-~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~g~~~~~gi~~vIvl~k 316 (445)
|.|.+.++|.+.+.++.++|+| ..|.++-.+| ++...++++ |. .++ ..||.++||+||
T Consensus 60 g~I~~i~~Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~---Lv--------~ae---------~~gi~pvIvlnK 119 (301)
T COG1162 60 GVIEKILPRKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRY---LV--------LAE---------AGGIEPVIVLNK 119 (301)
T ss_pred ceEEEEecccCceeCCcccccceEEEEEeccCCCCCHHHHHHH---HH--------HHH---------HcCCcEEEEEEc
Confidence 7788889999999999999999 7788888887 888888887 44 455 789999999999
Q ss_pred cccccCCChhHHHH-HHHHHHHHHHHHhhccCcceeeeccccccccc------ccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 317 VEAYIDFSEDEIIE-DNILNTVRSQVVQLHGSIEKHIELSNKCGVRI------RSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 317 ~e~~~Dl~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~------~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+|++. +++.. ++++..|++++ |+++.+++++++.+ -.+...+++|.||||||||+|+|.+..
T Consensus 120 ~DL~~----~~~~~~~~~~~~y~~~g-------y~v~~~s~~~~~~~~~l~~~l~~~~svl~GqSGVGKSSLiN~L~p~~ 188 (301)
T COG1162 120 IDLLD----DEEAAVKELLREYEDIG-------YPVLFVSAKNGDGLEELAELLAGKITVLLGQSGVGKSTLINALLPEL 188 (301)
T ss_pred cccCc----chHHHHHHHHHHHHhCC-------eeEEEecCcCcccHHHHHHHhcCCeEEEECCCCCcHHHHHHhhCchh
Confidence 77643 33322 67888999888 99999998876433 267789999999999999999999853
Q ss_pred ---ceeeecCC----CccceEEEEEEEECCeeEEEEECCCCCcCCCCcccHHHHHHHHHhhh
Q psy1007 390 ---ISIVTSIP----GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKNNQQ 444 (445)
Q Consensus 390 ---~~~vs~~~----~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~~~~e~~~i~~~~~~~~ 444 (445)
...+|... +||++.....+.-+| .|+|||||++++.++++++++..+|++++
T Consensus 189 ~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~l~~~~~e~l~~~F~ef~ 247 (301)
T COG1162 189 NQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLGLAHLEPEDLVQAFPEFA 247 (301)
T ss_pred hhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccCcccCCHHHHHHHhHHHH
Confidence 23344444 378888776665466 79999999999999999999999999986
No 7
>PRK12288 GTPase RsgA; Reviewed
Probab=99.74 E-value=9.7e-18 Score=169.40 Aligned_cols=159 Identities=25% Similarity=0.283 Sum_probs=114.1
Q ss_pred HHHhccc-cccccCCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCeEEEeeeccccccCCChhHHHHHH
Q psy1007 254 ESLASVE-AYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDN 332 (445)
Q Consensus 254 ~~~a~iE-~~Idfse~e~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~g~~~~~gi~~vIvl~k~e~~~Dl~~~~~~~~~ 332 (445)
.++||+| +.|.++...+++...++++ +. .++ ..|++++||+||+|+..+ ++....++
T Consensus 116 ~iaANvD~vlIV~s~~p~~s~~~Ldr~---L~--------~a~---------~~~i~~VIVlNK~DL~~~--~~~~~~~~ 173 (347)
T PRK12288 116 PIAANIDQIVIVSAVLPELSLNIIDRY---LV--------ACE---------TLGIEPLIVLNKIDLLDD--EGRAFVNE 173 (347)
T ss_pred eEEEEccEEEEEEeCCCCCCHHHHHHH---HH--------HHH---------hcCCCEEEEEECccCCCc--HHHHHHHH
Confidence 4579999 5666665433665555555 22 223 468999999999886422 11122335
Q ss_pred HHHHHHHHHHhhccCcceeeecccccccccc------cCcEEEEEcCCCCChhHHhhhhccccceeeecCCC-------c
Q psy1007 333 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIR------SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG-------T 399 (445)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~------~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~-------t 399 (445)
+.+.|++.+ |+++.+|+..+..+. .+..++|+|.||||||||+|+|++.....++..+. |
T Consensus 174 ~~~~y~~~g-------~~v~~vSA~tg~GideL~~~L~~ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHT 246 (347)
T PRK12288 174 QLDIYRNIG-------YRVLMVSSHTGEGLEELEAALTGRISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHT 246 (347)
T ss_pred HHHHHHhCC-------CeEEEEeCCCCcCHHHHHHHHhhCCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCc
Confidence 666666654 789999998875442 35568999999999999999999986555555443 6
Q ss_pred cceEEEEEEEECCeeEEEEECCCCCcCCCCcccHHHHHHHHHhhh
Q psy1007 400 TRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKNNQQ 444 (445)
Q Consensus 400 t~~~~~~~~~~~g~~v~l~DTpG~~~~~~~~~e~~~i~~~~~~~~ 444 (445)
|+......+.-++ .|+||||+++++...++..++..+|++|.
T Consensus 247 T~~~~l~~l~~~~---~liDTPGir~~~l~~~~~~~l~~~F~ei~ 288 (347)
T PRK12288 247 TTAARLYHFPHGG---DLIDSPGVREFGLWHLEPEQVTQGFVEFR 288 (347)
T ss_pred eeeEEEEEecCCC---EEEECCCCCcccCCCCCHHHHHHhhHHHH
Confidence 7777666664344 69999999999999899999999999985
No 8
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.73 E-value=3.1e-18 Score=165.55 Aligned_cols=171 Identities=25% Similarity=0.207 Sum_probs=122.7
Q ss_pred chHHHHHHHHHHHHHHHHhccc-cccccCCCcc-cchhhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCeEEEeeec
Q psy1007 239 GNLKQLYSEWRQLILESLASVE-AYIDFSEDEI-IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLAS 316 (445)
Q Consensus 239 g~l~~~l~~~~~~l~~~~a~iE-~~Idfse~e~-~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~g~~~~~gi~~vIvl~k 316 (445)
|.|.+.++|.+...++..+++| ..+.|+-.+| .+...+++. +. .++ ..+++++||+||
T Consensus 17 ~~i~~i~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~---l~--------~~~---------~~~i~~vIV~NK 76 (245)
T TIGR00157 17 VYGGAIAERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRF---LV--------VAE---------AQNIEPIIVLNK 76 (245)
T ss_pred eEEEEEecccceEECcccccCCEEEEEEECCCCCCCHHHHHHH---HH--------HHH---------HCCCCEEEEEEC
Confidence 4566667777777778899999 5666655444 344444443 11 223 478999999999
Q ss_pred cccccCCChhHHHHHHHHHHHHHHHHhhccCcceeeecccccccccc------cCcEEEEEcCCCCChhHHhhhhccccc
Q psy1007 317 VEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIR------SGIKSVIVGEPNVGKSSLMNFLCQKQI 390 (445)
Q Consensus 317 ~e~~~Dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~------~~~~v~lvG~~~vGKSsLln~l~~~~~ 390 (445)
+|+. ++....+++.+.|++.+ |+++.+|++++..+. .+..++++|+||||||||+|+|++...
T Consensus 77 ~DL~----~~~~~~~~~~~~~~~~g-------~~v~~~SAktg~gi~eLf~~l~~~~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 77 IDLL----DDEDMEKEQLDIYRNIG-------YQVLMTSSKNQDGLKELIEALQNRISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred cccC----CCHHHHHHHHHHHHHCC-------CeEEEEecCCchhHHHHHhhhcCCEEEEECCCCCCHHHHHHHHhhhhh
Confidence 7763 23333335666776544 889999999885542 456889999999999999999998754
Q ss_pred eeeecC-------CCccceEEEEEEEECCeeEEEEECCCCCcCCCCcccHHHHHHHHHhhh
Q psy1007 391 SIVTSI-------PGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKNNQQ 444 (445)
Q Consensus 391 ~~vs~~-------~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~~~~e~~~i~~~~~~~~ 444 (445)
..+++. .+||++.....+ -++ .|+||||+++++...+++.++..+|+++.
T Consensus 146 ~~t~~i~~~~~~G~hTT~~~~l~~l-~~~---~liDtPG~~~~~l~~~~~~~~~~~f~e~~ 202 (245)
T TIGR00157 146 QQVNDISSKLGLGKHTTTHVELFHF-HGG---LIADTPGFNEFGLWHLEPEQLTQGFVEFR 202 (245)
T ss_pred ccccceeccCCCCCCcCCceEEEEc-CCc---EEEeCCCccccCCCCCCHHHHHHhCHHHH
Confidence 332222 238888877666 244 79999999999999999999999999985
No 9
>PRK12289 GTPase RsgA; Reviewed
Probab=99.72 E-value=7.7e-18 Score=170.24 Aligned_cols=170 Identities=22% Similarity=0.270 Sum_probs=124.3
Q ss_pred chHHHHHHHHHHHHHHHHhccc-cccccCCCcc-cchhhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCeEEEeeec
Q psy1007 239 GNLKQLYSEWRQLILESLASVE-AYIDFSEDEI-IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLAS 316 (445)
Q Consensus 239 g~l~~~l~~~~~~l~~~~a~iE-~~Idfse~e~-~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~g~~~~~gi~~vIvl~k 316 (445)
|.|.+.++|.+.+.++.++|+| ..+.++-.+| +++..++++ +. .+. ..+++++||+||
T Consensus 70 ~~I~~vlpR~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~---L~--------~a~---------~~~ip~ILVlNK 129 (352)
T PRK12289 70 GAIAEVLPRKTELDRPPVANADQILLVFALAEPPLDPWQLSRF---LV--------KAE---------STGLEIVLCLNK 129 (352)
T ss_pred eEEEEEeccccceechhhhcCCEEEEEEECCCCCCCHHHHHHH---HH--------HHH---------HCCCCEEEEEEc
Confidence 5566777888888888999999 4556655444 454444554 22 223 578999999999
Q ss_pred cccccCCChhHHHHHHHHHHHHHHHHhhccCcceeeecccccccccc------cCcEEEEEcCCCCChhHHhhhhccccc
Q psy1007 317 VEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIR------SGIKSVIVGEPNVGKSSLMNFLCQKQI 390 (445)
Q Consensus 317 ~e~~~Dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~------~~~~v~lvG~~~vGKSsLln~l~~~~~ 390 (445)
+|+. +++.. +.|.+.|++.+ |+++.+|+..+..+. .+..++|+|+||||||||+|+|++...
T Consensus 130 ~DLv----~~~~~-~~~~~~~~~~g-------~~v~~iSA~tg~GI~eL~~~L~~ki~v~iG~SgVGKSSLIN~L~~~~~ 197 (352)
T PRK12289 130 ADLV----SPTEQ-QQWQDRLQQWG-------YQPLFISVETGIGLEALLEQLRNKITVVAGPSGVGKSSLINRLIPDVE 197 (352)
T ss_pred hhcC----ChHHH-HHHHHHHHhcC-------CeEEEEEcCCCCCHHHHhhhhccceEEEEeCCCCCHHHHHHHHcCccc
Confidence 7763 22222 35666666544 788999999875542 355689999999999999999998866
Q ss_pred eeeecCCC-------ccceEEEEEEEECCeeEEEEECCCCCcCCCCcccHHHHHHHHHhhh
Q psy1007 391 SIVTSIPG-------TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKNNQQ 444 (445)
Q Consensus 391 ~~vs~~~~-------tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~~~~e~~~i~~~~~~~~ 444 (445)
..++..++ ||++.....+.-++ .|+||||+++++. .++..++...|+++.
T Consensus 198 ~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~~l-~~~~~~l~~~F~e~~ 254 (352)
T PRK12289 198 LRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQPDL-DCSPRELAHYFPEAR 254 (352)
T ss_pred cccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccccc-ccCHHHHHhhHHHHH
Confidence 55566665 88888765554333 7999999999988 588899999999875
No 10
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.70 E-value=5.8e-18 Score=172.28 Aligned_cols=157 Identities=18% Similarity=0.143 Sum_probs=139.2
Q ss_pred eecceEEEeecc-cccCcceEeeccCCChHHHhhhhcc-------CCCCCCCCCeEEEeeeeecCCCCeeecCceeeecC
Q psy1007 86 VLDEGLCLWFPR-HGKCGVSVIRVSGPDTLNALKSMAC-------YPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157 (445)
Q Consensus 86 ~iD~~i~~~~~~-~~~~giavIrisGp~a~~il~~l~~-------~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~~f~ 157 (445)
+||++|++||++ ++++|++||++|||+++.+++.++. |.++||||++|||+|+++|++|+|
T Consensus 60 ~iDe~lvl~f~aP~SFTGEDvvEi~~HGg~~v~~~iL~~~l~~GaR~AepGEFs~RAFLNgK~DLtqAE----------- 128 (454)
T COG0486 60 IIDEVLVLYFKAPNSFTGEDVVEIQCHGGPVVVNLILELLLKLGARLAEPGEFSKRAFLNGKLDLTQAE----------- 128 (454)
T ss_pred EeeeeeEEEEeCCCCcccccEEEEEcCCCHHHHHHHHHHHHHcCCeecCCCcchHHHHhcCCccHHHHH-----------
Confidence 699999999999 7999999999999999999988754 889999999999999999999877
Q ss_pred CCCCcCCCceeEEEecCcHHHHHHHHHHHhcCCCcccccCCcccchhhhccccchhhhhhHHHHHHcccHHHHHHHHHhc
Q psy1007 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQM 237 (445)
Q Consensus 158 ~p~syTGEd~~Ei~~hg~~~v~~~i~~~l~~~~g~r~a~~Gef~~ra~~n~k~dl~~ae~~~~li~A~~~~~~~~al~~~ 237 (445)
+. +||+.|++....+.|.. ++.+.+++.
T Consensus 129 ------------------------------ai--------------------~dLI~A~te~a~r~A~~--~l~G~ls~~ 156 (454)
T COG0486 129 ------------------------------AI--------------------ADLIDAKTEQAARIALR--QLQGALSQL 156 (454)
T ss_pred ------------------------------HH--------------------HHHHhCCCHHHHHHHHH--HcCCcHHHH
Confidence 44 89999999999998877 899999999
Q ss_pred cchHHHHHHHHHHHHHHHHhccccccccCCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCeEEEee
Q psy1007 238 KGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICL 314 (445)
Q Consensus 238 ~g~l~~~l~~~~~~l~~~~a~iE~~Idfse~e~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~g~~~~~gi~~vIvl 314 (445)
...+++.+.+++..++..++|.|.++++...+ .+....+.+.+...++.+..+ +|.++|+|+++||+-
T Consensus 157 i~~lr~~li~~~a~vEa~IDfpeedi~~~~~~-----~i~~~l~~~~~~l~~ll~~~~----~g~ilr~G~kvvIiG 224 (454)
T COG0486 157 INELREALLELLAQVEANIDFPEEDIEELVLE-----KIREKLEELIAELDELLATAK----QGKILREGLKVVIIG 224 (454)
T ss_pred HHHHHHHHHHHHHHheEeCCCCcccccchhHH-----HHHHHHHHHHHHHHHHHHhhh----hhhhhhcCceEEEEC
Confidence 99999999999999999999999867665544 444555667777788888999 999999999999973
No 11
>PRK00098 GTPase RsgA; Reviewed
Probab=99.61 E-value=7.9e-16 Score=152.98 Aligned_cols=126 Identities=29% Similarity=0.319 Sum_probs=92.4
Q ss_pred ccCCeEEEeeeccccccCCChhHHHHHHHHHHHHHHHHhhccCcceeeecccccccccc------cCcEEEEEcCCCCCh
Q psy1007 305 RSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIR------SGIKSVIVGEPNVGK 378 (445)
Q Consensus 305 ~~gi~~vIvl~k~e~~~Dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~------~~~~v~lvG~~~vGK 378 (445)
..+++++||+||+|+. ++....+++.+.|++.+ ++++.+|+..+..+. .+..++++|+|||||
T Consensus 109 ~~~ip~iIVlNK~DL~----~~~~~~~~~~~~~~~~g-------~~v~~vSA~~g~gi~~L~~~l~gk~~~~~G~sgvGK 177 (298)
T PRK00098 109 ANGIKPIIVLNKIDLL----DDLEEARELLALYRAIG-------YDVLELSAKEGEGLDELKPLLAGKVTVLAGQSGVGK 177 (298)
T ss_pred HCCCCEEEEEEhHHcC----CCHHHHHHHHHHHHHCC-------CeEEEEeCCCCccHHHHHhhccCceEEEECCCCCCH
Confidence 4689999999998863 22222234556665544 788889998875442 578899999999999
Q ss_pred hHHhhhhccccceeeecCC-------CccceEEEEEEEECCeeEEEEECCCCCcCCCCcccHHHHHHHHHhhh
Q psy1007 379 SSLMNFLCQKQISIVTSIP-------GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKNNQQ 444 (445)
Q Consensus 379 SsLln~l~~~~~~~vs~~~-------~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~~~~e~~~i~~~~~~~~ 444 (445)
|||+|.|++.....++..+ .||++.....+.-++ .++||||+++++...++..++...|+++.
T Consensus 178 Stlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~---~~~DtpG~~~~~~~~~~~~~~~~~f~~~~ 247 (298)
T PRK00098 178 STLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGG---LLIDTPGFSSFGLHDLEAEELEHYFPEFR 247 (298)
T ss_pred HHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCc---EEEECCCcCccCCCCCCHHHHHHHHHHHH
Confidence 9999999987543323222 266666554443233 79999999999998889999999998874
No 12
>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]
Probab=99.60 E-value=6.2e-15 Score=149.80 Aligned_cols=159 Identities=21% Similarity=0.232 Sum_probs=123.1
Q ss_pred CCCcEEEEccCCC---CceEEEEEEecccHHHHHHHhcCCCCCCCCCCceeEEeeeecCCCCceecceEEEeecc-----
Q psy1007 26 IKNTIFALSSGHG---KCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR----- 97 (445)
Q Consensus 26 ~~dtI~A~at~~g---~~ai~viRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~iD~~i~~~~~~----- 97 (445)
..+..-|+.+..| .|-.+.|+|+||+|.++|++|++ ++.+.++|+++.|+.++|+. |.++||++++....
T Consensus 37 v~~Eh~avR~~aGlfDvShmgk~~V~GpdA~~~L~~l~~-ndv~kl~~Gr~~Yt~~lne~-G~v~dD~~v~rl~~d~f~l 114 (379)
T COG0404 37 VMEEHLAVREAAGLFDVSHMGKVEVSGPDAAAFLQRLLT-NDVSKLKPGRARYTLMLNED-GGIIDDLIVYRLGEDRFFL 114 (379)
T ss_pred HHHHHHHHHhcCceEeccCceEEEEECCCHHHHHHHHcc-cccCcCCCCcEEEeeeECCC-CCEEeeEEEEEecCCeEEE
Confidence 4456667888888 89999999999999999999999 55667779999999999986 77999999998555
Q ss_pred ----------------c------------ccCcceEeeccCCChHHHhhhhccCCCCCCCCCeEEEeee-eecCCCCeee
Q psy1007 98 ----------------H------------GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRN-IVDPVSEVVL 148 (445)
Q Consensus 98 ----------------~------------~~~giavIrisGp~a~~il~~l~~~~~~~~~~~rra~~~~-~~d~~~~~~~ 148 (445)
+ .....+++.||||+|..++++++.... ...++.-.+... +.+ +
T Consensus 115 v~~a~~~~~~~~~l~~~~~~~~~~v~~~~~t~~~~~lalqGPkAr~il~~~~~~~~-~~~l~~~~~~~~~i~g---~--- 187 (379)
T COG0404 115 VTNAATAEKDLAWLERHQAGPDLDVTLTSVTEDLAVLALQGPKAREVLAKLVDGDL-VEALPFFAFKEVTIGG---G--- 187 (379)
T ss_pred EeCccchHHHHHHHHHhhccCCcceEEeeccccEEEEEEECcCHHHHHHHhccccc-cccCCceEEEEEEecC---C---
Confidence 0 112678999999999999999976442 112443333221 111 0
Q ss_pred cCceeeecCCCCCcCCCceeEEEecCcHHHHHHHHHHHhcC---CCcccccCCc
Q psy1007 149 DEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL---PGLRPAEPGE 199 (445)
Q Consensus 149 d~~~~~~f~~p~syTGEd~~Ei~~hg~~~v~~~i~~~l~~~---~g~r~a~~Ge 199 (445)
.-++.+++|||||+++||+|+...+ ..+|++|... .|++|+++|.
T Consensus 188 ----~~~~i~R~gyTGE~G~Ei~~p~~~a--~~vw~aL~~aG~~~g~~P~Gl~A 235 (379)
T COG0404 188 ----VPVRISRTGYTGELGFEIYVPAEDA--AAVWDALLEAGEKFGVKPCGLGA 235 (379)
T ss_pred ----ceEEEEeccccCCCeEEEEecHHHH--HHHHHHHHHhhhhcCceEeecch
Confidence 0267889999999999999999988 5599999865 3799997765
No 13
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.59 E-value=1.1e-15 Score=151.28 Aligned_cols=171 Identities=27% Similarity=0.243 Sum_probs=114.3
Q ss_pred chHHHHHHHHHHHHHHH--------Hhccc-cccccCCCccc-chhhHHHHHHHHHHHHHHHHHHHHhhhccccccccCC
Q psy1007 239 GNLKQLYSEWRQLILES--------LASVE-AYIDFSEDEII-EDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGI 308 (445)
Q Consensus 239 g~l~~~l~~~~~~l~~~--------~a~iE-~~Idfse~e~~-~~~~~~~~~~~l~~l~~~L~~~~~~~~~~g~~~~~gi 308 (445)
+.|.+.++|.+.+.++. ++++| +.+.++-.+|. +...++++ +. .+. ..++
T Consensus 51 ~~i~~i~~R~~~l~R~~~~~~~~~i~anvD~vllV~d~~~p~~s~~~ldr~---L~--------~~~---------~~~i 110 (287)
T cd01854 51 GVIVRVLPRKNLLSRPAAGGREQVIAANVDQLVIVVSLNEPFFNPRLLDRY---LV--------AAE---------AAGI 110 (287)
T ss_pred EEEEEEECCCceEEccCCCCcceeEEEeCCEEEEEEEcCCCCCCHHHHHHH---HH--------HHH---------HcCC
Confidence 34455555556666655 89999 55666555553 44444443 21 223 4679
Q ss_pred eEEEeeeccccccCCChhHHHHHHHHHHHHHHHHhhccCcceeeecccccccccc------cCcEEEEEcCCCCChhHHh
Q psy1007 309 KSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIR------SGIKSVIVGEPNVGKSSLM 382 (445)
Q Consensus 309 ~~vIvl~k~e~~~Dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~------~~~~v~lvG~~~vGKSsLl 382 (445)
+++||+||+|+..+ .. ...+...|.+.+ |+++.+|+..+..+. .+..++++|++|||||||+
T Consensus 111 p~iIVlNK~DL~~~----~~-~~~~~~~~~~~g-------~~v~~vSA~~g~gi~~L~~~L~~k~~~~~G~sg~GKSTli 178 (287)
T cd01854 111 EPVIVLTKADLLDD----EE-EELELVEALALG-------YPVLAVSAKTGEGLDELREYLKGKTSVLVGQSGVGKSTLI 178 (287)
T ss_pred CEEEEEEHHHCCCh----HH-HHHHHHHHHhCC-------CeEEEEECCCCccHHHHHhhhccceEEEECCCCCCHHHHH
Confidence 99999999886422 11 112344444433 788899999885432 4678999999999999999
Q ss_pred hhhccccceeeec-------CCCccceEEEEEEEECCeeEEEEECCCCCcCCCCcccHHHHHHHHHhhh
Q psy1007 383 NFLCQKQISIVTS-------IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKNNQQ 444 (445)
Q Consensus 383 n~l~~~~~~~vs~-------~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~~~~e~~~i~~~~~~~~ 444 (445)
|.|++.....++. ..+||++.....+..++ .++||||+++++...++..++...|+++.
T Consensus 179 n~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~~~~~~~~~~~~~~f~~~~ 244 (287)
T cd01854 179 NALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREFGLLHIDPEELAHYFPEFR 244 (287)
T ss_pred HHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCccCCccCCHHHHHHHhHHHH
Confidence 9999875433221 22367776655553333 79999999988877788999999999875
No 14
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.54 E-value=2.6e-15 Score=157.17 Aligned_cols=158 Identities=22% Similarity=0.214 Sum_probs=132.6
Q ss_pred ceecceEEEeecc-cccCcceEeeccCCChHHHhhhhcc-------CCCCCCCCCeEEEeeeeecCCCCeeecCceeeec
Q psy1007 85 VVLDEGLCLWFPR-HGKCGVSVIRVSGPDTLNALKSMAC-------YPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWF 156 (445)
Q Consensus 85 ~~iD~~i~~~~~~-~~~~giavIrisGp~a~~il~~l~~-------~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~~f 156 (445)
+++|++|++||++ +++||++||++++|++..++++++. |+++||||++|||+||++|++|+|
T Consensus 57 ~~iD~~l~~~f~~P~S~TGEd~vEi~~HG~~~v~~~il~~l~~~g~r~A~pGEFt~RAflngk~dL~qaE---------- 126 (449)
T PRK05291 57 EVIDEVLVLYFPAPNSFTGEDVVEIQCHGGPAVLNLILELLLALGARLAEPGEFTKRAFLNGKLDLTQAE---------- 126 (449)
T ss_pred cccceEEEEEecCCCCccCCcEEEEECCCCHHHHHHHHHHHHHcCCEEccCccchHHHHhcCCcCHHHHH----------
Confidence 5899999999999 7999999999999999999988753 789999999999999999999877
Q ss_pred CCCCCcCCCceeEEEecCcHHHHHHHHHHHhcCCCcccccCCcccchhhhccccchhhhhhHHHHHHcccHHHHHHHHHh
Q psy1007 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQ 236 (445)
Q Consensus 157 ~~p~syTGEd~~Ei~~hg~~~v~~~i~~~l~~~~g~r~a~~Gef~~ra~~n~k~dl~~ae~~~~li~A~~~~~~~~al~~ 236 (445)
++ +||++|++...+..|-. |+++.+++
T Consensus 127 -------------------------------ai--------------------~~li~a~t~~~~~~al~--~l~G~l~~ 153 (449)
T PRK05291 127 -------------------------------AI--------------------ADLIDAKTEAAARLALR--QLQGALSK 153 (449)
T ss_pred -------------------------------HH--------------------HHHHhCCCHHHHHHHHH--hcCcHHHH
Confidence 45 88999999999999877 89999999
Q ss_pred ccchHHHHHHHHHHHHHHHHhccccccccCCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCeEEEee
Q psy1007 237 MKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICL 314 (445)
Q Consensus 237 ~~g~l~~~l~~~~~~l~~~~a~iE~~Idfse~e~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~g~~~~~gi~~vIvl 314 (445)
....+++.+.++...++..+++.|..++..+.+ .+......+..-++++.+..+ ++..+++|++++|+-
T Consensus 154 ~~~~~r~~l~~~~a~iea~iDf~ee~~~~~~~~-----~i~~~i~~l~~~l~~l~~~~~----~~~~~~~~~kV~ivG 222 (449)
T PRK05291 154 LINELREELLELLALVEAAIDFPEEDIEFLSDE-----KILEKLEELIAELEALLASAR----QGEILREGLKVVIAG 222 (449)
T ss_pred HHHHHHHHHHHHHHHheEEccCCCCCcccccHH-----HHHHHHHHHHHHHHHHHHHHH----HHHHhhcCCEEEEEC
Confidence 999999999999999999999999655433322 344444556666666667777 677788998887763
No 15
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.50 E-value=9.3e-15 Score=152.48 Aligned_cols=153 Identities=13% Similarity=0.068 Sum_probs=125.9
Q ss_pred eecceEEEeecc-cccCcceEeeccCCChHHHhhhhcc-------CCCCCCCCCeEEEeeeeecCCCCeeecCceeeecC
Q psy1007 86 VLDEGLCLWFPR-HGKCGVSVIRVSGPDTLNALKSMAC-------YPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157 (445)
Q Consensus 86 ~iD~~i~~~~~~-~~~~giavIrisGp~a~~il~~l~~-------~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~~f~ 157 (445)
+||++|++||++ +++||++|+++++|++..++++++. |+++||||++|||+||++|++|+|
T Consensus 50 ~iD~~l~~~f~~P~S~TGEDvvEi~~HGg~~v~~~il~~l~~~g~R~A~pGEFT~RAflNGk~DL~qaE----------- 118 (442)
T TIGR00450 50 CKDDELLFKFVAPNSYTGEDVIEIQCHGSMLIVQEILQLCLKSGARLAQPGEFTQRAFLNGKMDLTQAE----------- 118 (442)
T ss_pred EeeeEEEEEEcCCCCcccccEEEEECCCCHHHHHHHHHHHHHcCCeEcCCchhhHHHHhcCCccHHHHH-----------
Confidence 799999999999 7999999999999999999988753 889999999999999999999887
Q ss_pred CCCCcCCCceeEEEecCcHHHHHHHHHHHhcCCCcccccCCcccchhhhccccchhhhhhHHHHHHcccHHHHHHHHHhc
Q psy1007 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQM 237 (445)
Q Consensus 158 ~p~syTGEd~~Ei~~hg~~~v~~~i~~~l~~~~g~r~a~~Gef~~ra~~n~k~dl~~ae~~~~li~A~~~~~~~~al~~~ 237 (445)
++ +||+.|++......|.. |+++++++.
T Consensus 119 ------------------------------av--------------------~dlI~a~t~~~~~~A~~--~l~G~ls~~ 146 (442)
T TIGR00450 119 ------------------------------AI--------------------NELILAPNNKVKDIALN--KLAGELDQK 146 (442)
T ss_pred ------------------------------HH--------------------HHHHhCCCHHHHHHHHH--hcCcHHHHH
Confidence 55 89999999999999988 899999999
Q ss_pred cchHHHHHHHHHHHHHHHHhccccccccCCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCeEEEee
Q psy1007 238 KGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICL 314 (445)
Q Consensus 238 ~g~l~~~l~~~~~~l~~~~a~iE~~Idfse~e~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~g~~~~~gi~~vIvl 314 (445)
...+++.+.++++.++..++|.|.+. +.+ + +.. .+......+..+.... . +..+++|++++|+-
T Consensus 147 ~~~~r~~l~~~~a~iea~iDf~ee~~-~~~-~-~~~-~l~~~~~~l~~ll~~~----~-----~~~~~~g~kVvIvG 210 (442)
T TIGR00450 147 IEAIRKSLLQLLAQVEVNIDYEEDDD-EQD-S-LNQ-LLLSIIAELKDILNSY----K-----LEKLDDGFKLAIVG 210 (442)
T ss_pred HHHHHHHHHHHHHHeeEECCcCCCCc-cHH-H-HHH-HHHHHHHHHHHHHHHH----H-----HHHhhcCCEEEEEC
Confidence 99999999999999999999999652 221 2 222 3445545555555544 3 13458889888864
No 16
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.48 E-value=4.3e-13 Score=136.19 Aligned_cols=60 Identities=32% Similarity=0.380 Sum_probs=53.5
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEE-CCeeEEEEECCCCC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDI-GGYPVILLDTAGLR 424 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~-~g~~v~l~DTpG~~ 424 (445)
..++|+++|+||||||||+|+|++... .+++.+++|+|+....+.+ ++.++.+|||||+.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~-~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~ 248 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADV-YAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFI 248 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCce-eeccCCccccCCEEEEEEeCCCceEEEEecCccc
Confidence 347999999999999999999999874 5678899999999999988 67899999999994
No 17
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.48 E-value=1.7e-14 Score=129.85 Aligned_cols=104 Identities=26% Similarity=0.226 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhhccCcceeeecccccccccc------cCcEEEEEcCCCCChhHHhhhhccccce---eeecCC----
Q psy1007 331 DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIR------SGIKSVIVGEPNVGKSSLMNFLCQKQIS---IVTSIP---- 397 (445)
Q Consensus 331 ~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~------~~~~v~lvG~~~vGKSsLln~l~~~~~~---~vs~~~---- 397 (445)
+++++.|++++ |+++.+|...++.+. ++..++++|++|||||||+|.|++.... .++...
T Consensus 2 ~~~~~~y~~~g-------y~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGk 74 (161)
T PF03193_consen 2 EELLEQYEKLG-------YPVFFISAKTGEGIEELKELLKGKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGK 74 (161)
T ss_dssp HHHHHHHHHTT-------SEEEE-BTTTTTTHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHTSS----S----------
T ss_pred HHHHHHHHHcC-------CcEEEEeCCCCcCHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCc
Confidence 46888999988 999999998775443 5789999999999999999999987322 233332
Q ss_pred CccceEEEEEEEECCeeEEEEECCCCCcCCCCcccHHHHHHHHHhhh
Q psy1007 398 GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKNNQQ 444 (445)
Q Consensus 398 ~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~~~~e~~~i~~~~~~~~ 444 (445)
.||+......+..+ ..|+||||+++++...+++.+|...|++++
T Consensus 75 HTTt~~~l~~l~~g---~~iIDTPGf~~~~l~~~~~~~l~~~F~e~~ 118 (161)
T PF03193_consen 75 HTTTHRELFPLPDG---GYIIDTPGFRSFGLWHIDPEELAQYFPEFR 118 (161)
T ss_dssp ----SEEEEEETTS---EEEECSHHHHT--GCCS-HHHHHHCSGGGH
T ss_pred ccCCCeeEEecCCC---cEEEECCCCCccccccCCHHHHHHHHHHhc
Confidence 36777666555322 379999999999999999999999999885
No 18
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.44 E-value=7.5e-13 Score=117.07 Aligned_cols=99 Identities=25% Similarity=0.291 Sum_probs=76.0
Q ss_pred cCCeEEEeeeccccccCCChhHHHHHHHHHHHHHHHHhhccCcceeeecccccccccccCcEEEEEcCCCCChhHHhhhh
Q psy1007 306 SGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFL 385 (445)
Q Consensus 306 ~gi~~vIvl~k~e~~~Dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~lvG~~~vGKSsLln~l 385 (445)
.+.+.++|+||+|+. +++. ...+.+.|++.+ ++++.+|+..+.. +++++|.|||||||++|++
T Consensus 41 ~~k~~iivlNK~DL~----~~~~-~~~~~~~~~~~~-------~~ii~iSa~~~~~-----~~~~~G~~~vGKstlin~l 103 (141)
T cd01857 41 PRKKNILLLNKADLL----TEEQ-RKAWAEYFKKEG-------IVVVFFSALKENA-----TIGLVGYPNVGKSSLINAL 103 (141)
T ss_pred CCCcEEEEEechhcC----CHHH-HHHHHHHHHhcC-------CeEEEEEecCCCc-----EEEEECCCCCCHHHHHHHH
Confidence 478999999997763 2222 224556665544 6778888887653 8999999999999999999
Q ss_pred ccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCC
Q psy1007 386 CQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424 (445)
Q Consensus 386 ~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~ 424 (445)
++.....++..+++|++..... +++ .+.+|||||+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~i~DtpG~~ 139 (141)
T cd01857 104 VGKKKVSVSATPGKTKHFQTIF--LTP-TITLCDCPGLV 139 (141)
T ss_pred hCCCceeeCCCCCcccceEEEE--eCC-CEEEEECCCcC
Confidence 9998877888899998876544 443 56899999986
No 19
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.40 E-value=1.7e-12 Score=132.24 Aligned_cols=126 Identities=29% Similarity=0.424 Sum_probs=94.7
Q ss_pred ccCCeEEEeeeccccccCCChhHHHHHHHHHHHHHHHHhhccCcceeeeccccccccc----------------------
Q psy1007 305 RSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRI---------------------- 362 (445)
Q Consensus 305 ~~gi~~vIvl~k~e~~~Dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~---------------------- 362 (445)
+.+.++++|.||+|.. ..+ .....|-++| . -+.+.+|+..+..+
T Consensus 110 ~~~kpviLvvNK~D~~----~~e----~~~~efyslG---~---g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~ 175 (444)
T COG1160 110 RSKKPVILVVNKIDNL----KAE----ELAYEFYSLG---F---GEPVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEE 175 (444)
T ss_pred hcCCCEEEEEEcccCc----hhh----hhHHHHHhcC---C---CCceEeehhhccCHHHHHHHHHhhcCCccccccccc
Confidence 6679999999998863 111 1122233333 1 23344455544221
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCCC--CcccHHHHHHHH
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS--DIIETEGNLLEK 440 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~--~~~e~~~i~~~~ 440 (445)
...++++++|.||||||||+|+|++++...+++.+|||+|.....++++++.+.++||+|++.-.. +.+|.....++.
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 135899999999999999999999999999999999999999999999999999999999996542 346778888888
Q ss_pred Hhhh
Q psy1007 441 NNQQ 444 (445)
Q Consensus 441 ~~~~ 444 (445)
++|.
T Consensus 256 ~aI~ 259 (444)
T COG1160 256 KAIE 259 (444)
T ss_pred hHHh
Confidence 7775
No 20
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.32 E-value=4.8e-12 Score=113.88 Aligned_cols=105 Identities=22% Similarity=0.275 Sum_probs=72.9
Q ss_pred ccCCeEEEeeeccccccCCChhHHHHHHHHHHHHHHHHhhccCcceeeeccccccccc----------------ccCcEE
Q psy1007 305 RSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRI----------------RSGIKS 368 (445)
Q Consensus 305 ~~gi~~vIvl~k~e~~~Dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~----------------~~~~~v 368 (445)
..+.++++|+||+|+. +++.. ..+++.|++.. . ..++.+|+..+... ..+.++
T Consensus 37 ~~~~p~ilVlNKiDl~----~~~~~-~~~~~~~~~~~-----~-~~~~~iSa~~~~~~~~L~~~l~~~~~~~~~~~~~~v 105 (157)
T cd01858 37 KPHKHLIFVLNKCDLV----PTWVT-ARWVKILSKEY-----P-TIAFHASINNPFGKGSLIQLLRQFSKLHSDKKQISV 105 (157)
T ss_pred cCCCCEEEEEEchhcC----CHHHH-HHHHHHHhcCC-----c-EEEEEeeccccccHHHHHHHHHHHHhhhccccceEE
Confidence 3468999999997763 23222 35666665432 0 11344565544211 135678
Q ss_pred EEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCC
Q psy1007 369 VIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGL 423 (445)
Q Consensus 369 ~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~ 423 (445)
+++|.||||||||+|+|.+.....++..+++|++.....+ + ..+.++||||+
T Consensus 106 ~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~--~-~~~~liDtPGi 157 (157)
T cd01858 106 GFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL--M-KRIYLIDCPGV 157 (157)
T ss_pred EEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc--C-CCEEEEECcCC
Confidence 8999999999999999999888888999999988765433 2 34689999996
No 21
>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed
Probab=99.32 E-value=9.7e-12 Score=127.21 Aligned_cols=149 Identities=16% Similarity=0.125 Sum_probs=108.7
Q ss_pred CCCcEEEEccCCC---CceEEEEEEecccHHHHHHHhcCCCCCCCCCCceeEEeeeecCCCCceecceEEEeecc-----
Q psy1007 26 IKNTIFALSSGHG---KCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR----- 97 (445)
Q Consensus 26 ~~dtI~A~at~~g---~~ai~viRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~iD~~i~~~~~~----- 97 (445)
..+.--|+.+..| .|..+.|+|+||||.++|+++++ ++.+.++++++.|+.++|+. |.++||.+++...+
T Consensus 43 ~~~E~~A~R~~~gl~D~S~~~~i~V~G~Da~~fL~~l~t-~di~~l~~G~~~yt~~ln~~-G~i~~D~~v~r~~ed~~~l 120 (368)
T PRK12486 43 VEDDYAHLKEHVQVWDVAVERQVEIRGPDAARLVQMLTP-RDLRGMKPGQCYYVPIVDET-GGMLNDPVALKLAEDRWWI 120 (368)
T ss_pred HHHHHHHHHhcceEEEcCCcEEEEEECCCHHHHHHHhcc-cccccCCCCcEEEEEEEcCC-CcEEeeEEEEEecCCEEEE
Confidence 3345557777776 78889999999999999999998 55667889999999999986 77999999886633
Q ss_pred ---------------c--------ccCcceEeeccCCChHHHhhhhccCCCCCCCCCeEEEeeeeecCCCCeeecCceee
Q psy1007 98 ---------------H--------GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCL 154 (445)
Q Consensus 98 ---------------~--------~~~giavIrisGp~a~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~ 154 (445)
. .....+++.||||.|..++++++.....+ .+...+. ..+.. + .-
T Consensus 121 ~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~l~lqGP~s~~il~~l~~~~l~~--~~~~~~~--~~~i~-g-------~~ 188 (368)
T PRK12486 121 SIADSDLLLWVKGLANGRKLDVLVVEPDVSPLAVQGPKADALMARVFGEAIRD--LRFFRFG--YFDFE-G-------TD 188 (368)
T ss_pred EEcCccHHHHHHHhhhhcCCcEEEecCCeEEEEeECcCHHHHHHHHhcCChhh--CCCceeE--EEEEC-C-------cE
Confidence 0 11246789999999999999987533321 2221111 11111 1 11
Q ss_pred ecCCCCCcCCCceeEEEecCcHHHHHHHHHHHhcC
Q psy1007 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL 189 (445)
Q Consensus 155 ~f~~p~syTGEd~~Ei~~hg~~~v~~~i~~~l~~~ 189 (445)
.+.+++|||||+++||+++... -...+|+.|.+.
T Consensus 189 ~~i~R~g~tGE~G~Ei~~~~~~-~a~~l~~~L~~a 222 (368)
T PRK12486 189 LVIARSGYSKQGGFEIYVEGSD-LGMPLWDALFEA 222 (368)
T ss_pred EEEEeccccCCceEEEEeccHH-HHHHHHHHHHhc
Confidence 5678999999999999997652 235689999865
No 22
>PRK01889 GTPase RsgA; Reviewed
Probab=99.30 E-value=5.3e-12 Score=128.52 Aligned_cols=155 Identities=23% Similarity=0.247 Sum_probs=99.5
Q ss_pred HHHhccc-cccccCCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCeEEEeeeccccccCCChhHHHHHH
Q psy1007 254 ESLASVE-AYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDN 332 (445)
Q Consensus 254 ~~~a~iE-~~Idfse~e~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~g~~~~~gi~~vIvl~k~e~~~Dl~~~~~~~~~ 332 (445)
.++||+| +.|.++-..+++...++++ |. .++ ..|++++||+||+|+..+ .+ +
T Consensus 108 ~iaANvD~vliV~s~~p~~~~~~ldr~---L~--------~a~---------~~~i~piIVLNK~DL~~~---~~----~ 160 (356)
T PRK01889 108 LIAANVDTVFIVCSLNHDFNLRRIERY---LA--------LAW---------ESGAEPVIVLTKADLCED---AE----E 160 (356)
T ss_pred eEEEeCCEEEEEEecCCCCChhHHHHH---HH--------HHH---------HcCCCEEEEEEChhcCCC---HH----H
Confidence 4578999 4455544433766566665 22 444 689999999999887532 11 1
Q ss_pred HHHHHHHHHHhhccCcceeeeccccccccc-------ccCcEEEEEcCCCCChhHHhhhhccccceeeecC-------CC
Q psy1007 333 ILNTVRSQVVQLHGSIEKHIELSNKCGVRI-------RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI-------PG 398 (445)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~-------~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~-------~~ 398 (445)
..+.+.+. ...|+++.+|+.++..+ ..|.+++++|.||+|||||+|.+++......+.. ..
T Consensus 161 ~~~~~~~~-----~~g~~Vi~vSa~~g~gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~ 235 (356)
T PRK01889 161 KIAEVEAL-----APGVPVLAVSALDGEGLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH 235 (356)
T ss_pred HHHHHHHh-----CCCCcEEEEECCCCccHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc
Confidence 12222222 23489999998877543 3577999999999999999999998643222211 12
Q ss_pred ccceEEEEEEEECCeeEEEEECCCCCcCCCCcccHHHHHHHHHhhh
Q psy1007 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKNNQQ 444 (445)
Q Consensus 399 tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~~~~e~~~i~~~~~~~~ 444 (445)
+|+......+.-++ .++||||++++.....+ .++...|+++.
T Consensus 236 tt~~~~l~~l~~~~---~l~DtpG~~~~~l~~~~-~~l~~~f~~~~ 277 (356)
T PRK01889 236 TTTHRELHPLPSGG---LLIDTPGMRELQLWDAE-DGVEETFSDIE 277 (356)
T ss_pred hhhhccEEEecCCC---eecCCCchhhhcccCch-hhHHHhHHHHH
Confidence 44443333332122 68899999988776644 67888887764
No 23
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.29 E-value=5.9e-11 Score=117.49 Aligned_cols=106 Identities=27% Similarity=0.408 Sum_probs=76.2
Q ss_pred CCeEEEeeeccccccCCChhHHHHHHHHHHHHHHHHhhccCcceeeeccccccccc------------------------
Q psy1007 307 GIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRI------------------------ 362 (445)
Q Consensus 307 gi~~vIvl~k~e~~~Dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~------------------------ 362 (445)
+.+.++|+||+|+. +.. ..+.|.+.|++.+ ++++.+|+..+..+
T Consensus 51 ~kp~iiVlNK~DL~----~~~-~~~~~~~~~~~~~-------~~vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~ 118 (287)
T PRK09563 51 NKPRLLILNKSDLA----DPE-VTKKWIEYFEEQG-------IKALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMR 118 (287)
T ss_pred CCCEEEEEEchhcC----CHH-HHHHHHHHHHHcC-------CeEEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 56889999997752 222 1235666665432 45666676655221
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCC
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT 427 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~ 427 (445)
..+++++++|.||||||||+|+|++.....++..+|+|++.+. +.++ ..+.++||||+....
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~~-~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQW--IKLG-KGLELLDTPGILWPK 180 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEE--EEeC-CcEEEEECCCcCCCC
Confidence 1346899999999999999999999988778999999999865 3333 357899999998443
No 24
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.28 E-value=7.5e-11 Score=116.10 Aligned_cols=106 Identities=27% Similarity=0.387 Sum_probs=75.3
Q ss_pred CCeEEEeeeccccccCCChhHHHHHHHHHHHHHHHHhhccCcceeeeccccccccc------------------------
Q psy1007 307 GIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRI------------------------ 362 (445)
Q Consensus 307 gi~~vIvl~k~e~~~Dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~------------------------ 362 (445)
+.+.++|+||+|+ .+... .+.|.+.|++.+ ++++.+|+..+..+
T Consensus 48 ~kp~IiVlNK~DL----~~~~~-~~~~~~~~~~~~-------~~vi~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~ 115 (276)
T TIGR03596 48 NKPRLIVLNKADL----ADPAV-TKQWLKYFEEKG-------IKALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLK 115 (276)
T ss_pred CCCEEEEEEcccc----CCHHH-HHHHHHHHHHcC-------CeEEEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCC
Confidence 4678999999775 22222 234555664422 45666676655221
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCC
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT 427 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~ 427 (445)
...++++++|.||||||||+|+|.+.....++..+++|+..+... ++ ..+.++||||+....
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~--~~-~~~~l~DtPG~~~~~ 177 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIK--LS-DGLELLDTPGILWPK 177 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEE--eC-CCEEEEECCCcccCC
Confidence 124689999999999999999999988777889999999876543 33 356899999997443
No 25
>PLN02319 aminomethyltransferase
Probab=99.27 E-value=1.3e-11 Score=127.88 Aligned_cols=158 Identities=17% Similarity=0.135 Sum_probs=111.4
Q ss_pred cEEEEccCCC---CceEEEEEEecccHHHHHHHhcCCCCCCCCCCceeEEeeeecCCCCceecceEEEeecc--------
Q psy1007 29 TIFALSSGHG---KCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR-------- 97 (445)
Q Consensus 29 tI~A~at~~g---~~ai~viRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~iD~~i~~~~~~-------- 97 (445)
..-|+.+..| .|..++|+|+||||.++|+.+++ +|.+.++++++.|+.++|+. |.++||.+++...+
T Consensus 67 E~~a~R~~~gl~DlS~~~~i~V~G~Da~~fLq~l~t-~dv~~l~~G~~~yt~~ln~~-G~ii~D~~v~r~~~d~~~l~~~ 144 (404)
T PLN02319 67 STLNCRQNGSLFDVSHMCGLSLKGKDAIPFLETLVV-ADIAGLKDGTGTLSVFTNEK-GGIIDDTVITKVTDDHIYLVVN 144 (404)
T ss_pred HHHHHHhCeEEEECCCcEEEEEECCCHHHHHhhhcc-cccCCCCCCCEEEeEEECCC-CeEEEEEEEEEEcCCEEEEEEC
Confidence 3445666655 67789999999999999999998 56677889999999999987 77999999887733
Q ss_pred -------------c--------------ccCcceEeeccCCChHHHhhhhccCCCCCCCCCeEEEeeeeecCCCCeeecC
Q psy1007 98 -------------H--------------GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDE 150 (445)
Q Consensus 98 -------------~--------------~~~giavIrisGp~a~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~~~d~ 150 (445)
+ .....+++.|+||.+.+++++++.....+ .+...+. ..+.. +
T Consensus 145 ~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~l~lqGP~s~~~l~~l~~~~l~~--~~f~~~~--~~~i~-g----- 214 (404)
T PLN02319 145 AGCRDKDLAHIEEHMKAFKAKGGDVSWHVHDERSLLALQGPLAAPVLQHLTKEDLSK--MYFGDFR--ITDIN-G----- 214 (404)
T ss_pred CccHHHHHHHHHhhhhhccCCCCcEEEEEcCCeEEEEEECccHHHHHHHhcccchhh--CCCceEE--EEEEC-C-----
Confidence 0 11235688999999999999987533211 1111111 11111 1
Q ss_pred ceeeecCCCCCcCCCceeEEEecCcHHHHHHHHHHHhcCC--CcccccCCcccc
Q psy1007 151 GLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLP--GLRPAEPGEFSK 202 (445)
Q Consensus 151 ~~~~~f~~p~syTGEd~~Ei~~hg~~~v~~~i~~~l~~~~--g~r~a~~Gef~~ 202 (445)
.-.+.++++||||+++||+++.+.+ ..+|+.|.+.- |+++++.+....
T Consensus 215 --~~v~i~R~g~tGE~G~El~~p~~~a--~~l~~~L~~aG~~g~~~~G~~a~d~ 264 (404)
T PLN02319 215 --ADCFLTRTGYTGEDGFEISVPSEHA--VDLAKALLEKSEGKVRLTGLGARDS 264 (404)
T ss_pred --eeEEEEEeeecCCCeEEEEEcHHHH--HHHHHHHHhCcccCcEecchhHhhH
Confidence 1144667899999999999998766 57999998751 366665444333
No 26
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.26 E-value=5.8e-11 Score=108.43 Aligned_cols=102 Identities=30% Similarity=0.464 Sum_probs=73.6
Q ss_pred CCeEEEeeeccccccCCChhHHHHHHHHHHHHHHHHhhccCcceeeecccccccccc-----------------------
Q psy1007 307 GIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIR----------------------- 363 (445)
Q Consensus 307 gi~~vIvl~k~e~~~Dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~----------------------- 363 (445)
+.++++|+||+|+. +++.. ..+.+.|+..+ ++++.+|+..+..+.
T Consensus 46 ~k~~ilVlNK~Dl~----~~~~~-~~~~~~~~~~~-------~~vi~iSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~ 113 (171)
T cd01856 46 NKPRIIVLNKADLA----DPKKT-KKWLKYFESKG-------EKVLFVNAKSGKGVKKLLKAAKKLLKDIEKLKAKGLLP 113 (171)
T ss_pred CCCEEEEEehhhcC----ChHHH-HHHHHHHHhcC-------CeEEEEECCCcccHHHHHHHHHHHHHHHhhhhhcccCC
Confidence 46899999998863 22221 23445554432 566777777663221
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGL 423 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~ 423 (445)
.+++++++|.+|||||||+|++.+..+..++..++||++.....+. ..+.++||||+
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 2368999999999999999999998877778888999888775543 45689999997
No 27
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.25 E-value=2.5e-11 Score=108.95 Aligned_cols=105 Identities=31% Similarity=0.423 Sum_probs=75.9
Q ss_pred ccCCeEEEeeeccccccCCChhHHHHHHHHHHHHHHHHhhccCcceeeeccccccccc----------------------
Q psy1007 305 RSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRI---------------------- 362 (445)
Q Consensus 305 ~~gi~~vIvl~k~e~~~Dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~---------------------- 362 (445)
..+.++++|+||+|+. +.+. ...|+..|+... .++++.+|+..+..+
T Consensus 27 ~~~~p~IiVlNK~Dl~----~~~~-~~~~~~~~~~~~------~~~ii~vSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~ 95 (155)
T cd01849 27 EKGKKLILVLNKADLV----PKEV-LRKWLAYLRHSY------PTIPFKISATNGQGIEKKESAFTKQTNSNLKSYAKDG 95 (155)
T ss_pred cCCCCEEEEEechhcC----CHHH-HHHHHHHHHhhC------CceEEEEeccCCcChhhHHHHHHHHhHHHHHHHHhcc
Confidence 4578999999997763 2222 224444444321 256777788776322
Q ss_pred --ccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCC
Q psy1007 363 --RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGL 423 (445)
Q Consensus 363 --~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~ 423 (445)
..+.+++++|.||+||||++|.+++.....++..++||++.....+ + ..+.++||||+
T Consensus 96 ~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtPG~ 155 (155)
T cd01849 96 KLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL--D-NKIKLLDTPGI 155 (155)
T ss_pred ccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe--c-CCEEEEECCCC
Confidence 2457899999999999999999999876667888999999876544 2 45789999996
No 28
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.23 E-value=2.5e-11 Score=112.64 Aligned_cols=112 Identities=28% Similarity=0.298 Sum_probs=72.0
Q ss_pred cCCeEEEeeeccccccCCChhHHHHHHHHHHHHHHHHhhccCcceeeecccccccccc-----------cCcEEEEEcCC
Q psy1007 306 SGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIR-----------SGIKSVIVGEP 374 (445)
Q Consensus 306 ~gi~~vIvl~k~e~~~Dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-----------~~~~v~lvG~~ 374 (445)
.+.+.++|+||+|+...-. .....+.+.+.+... .......+++.+|+..+..+. ++.+++++|.|
T Consensus 60 ~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~~~~~~~~~G~~ 136 (190)
T cd01855 60 GNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAA--GLGLKPKDVILISAKKGWGVEELINAIKKLAKKGGDVYVVGAT 136 (190)
T ss_pred CCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHh--hcCCCcccEEEEECCCCCCHHHHHHHHHHHhhcCCcEEEEcCC
Confidence 4678999999988742211 111111222111100 011111256778888775432 45789999999
Q ss_pred CCChhHHhhhhccccc--------eeeecCCCccceEEEEEEEECCeeEEEEECCCC
Q psy1007 375 NVGKSSLMNFLCQKQI--------SIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGL 423 (445)
Q Consensus 375 ~vGKSsLln~l~~~~~--------~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~ 423 (445)
|||||||+|+|++... ..++..++||++.....+.. .+.++||||+
T Consensus 137 nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 137 NVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 9999999999998542 24578889999988766532 4589999996
No 29
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.23 E-value=4e-11 Score=107.76 Aligned_cols=64 Identities=38% Similarity=0.543 Sum_probs=53.3
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~~~ 430 (445)
++|+++|.||||||||+|+|++.+ ..++++||+|.+.....+.+++..+.++||||+.+.....
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s 64 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKS 64 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCC
Confidence 479999999999999999999998 4679999999999999999999999999999998665443
No 30
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.23 E-value=7.6e-11 Score=105.70 Aligned_cols=103 Identities=29% Similarity=0.335 Sum_probs=70.0
Q ss_pred cCCeEEEeeeccccccCCChhHHHHHHHHHHHHHHHHhhccCcceeeecccccccccc--------------cCcEEEEE
Q psy1007 306 SGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIR--------------SGIKSVIV 371 (445)
Q Consensus 306 ~gi~~vIvl~k~e~~~Dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~--------------~~~~v~lv 371 (445)
.+.+.++|+||+|+. ++.... .+...++. ..++++.+|+..+..+. ...+++++
T Consensus 40 ~~~p~iiv~NK~Dl~----~~~~~~-~~~~~~~~-------~~~~~~~iSa~~~~gi~~L~~~l~~~~~~~~~~~~~~~i 107 (156)
T cd01859 40 LGKKLLIVLNKADLV----PKEVLE-KWKSIKES-------EGIPVVYVSAKERLGTKILRRTIKELAKIDGKEGKVGVV 107 (156)
T ss_pred CCCcEEEEEEhHHhC----CHHHHH-HHHHHHHh-------CCCcEEEEEccccccHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 478999999998863 222221 22222211 12567888888774331 35689999
Q ss_pred cCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCC
Q psy1007 372 GEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGL 423 (445)
Q Consensus 372 G~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~ 423 (445)
|.+|+||||++|++.+.....+++.+++|++... +..+ ..+.+|||||+
T Consensus 108 g~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~--~~~~-~~~~~~DtpGi 156 (156)
T cd01859 108 GYPNVGKSSIINALKGRHSASTSPSPGYTKGEQL--VKIT-SKIYLLDTPGV 156 (156)
T ss_pred CCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEE--EEcC-CCEEEEECcCC
Confidence 9999999999999998776566777787766543 2223 35789999996
No 31
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.22 E-value=5.5e-11 Score=108.97 Aligned_cols=56 Identities=45% Similarity=0.617 Sum_probs=48.5
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGL 423 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~ 423 (445)
.++++++|.||||||||+|+|++.....++..||+|++.....+ + ..+.++||||+
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~--~-~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL--D-KKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe--C-CCEEEEECcCC
Confidence 47999999999999999999999888788999999998776544 3 35789999996
No 32
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.22 E-value=3.3e-11 Score=122.94 Aligned_cols=123 Identities=24% Similarity=0.261 Sum_probs=79.2
Q ss_pred CCeEEEeeeccccccCCChhHHHHHHHH-HHHHHHHHhhccCcceeeecccccccccc----------cCcEEEEEcCCC
Q psy1007 307 GIKSVICLASVEAYIDFSEDEIIEDNIL-NTVRSQVVQLHGSIEKHIELSNKCGVRIR----------SGIKSVIVGEPN 375 (445)
Q Consensus 307 gi~~vIvl~k~e~~~Dl~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~----------~~~~v~lvG~~~ 375 (445)
+.++++|+||+|++..-...+... +|+ +.+++.+ ....+++.+|+..+..+. .+.+++++|.||
T Consensus 90 ~~piilV~NK~DLl~k~~~~~~~~-~~l~~~~k~~g----~~~~~i~~vSAk~g~gv~eL~~~l~~~~~~~~v~~vG~~n 164 (360)
T TIGR03597 90 GNPVLLVGNKIDLLPKSVNLSKIK-EWMKKRAKELG----LKPVDIILVSAKKGNGIDELLDKIKKARNKKDVYVVGVTN 164 (360)
T ss_pred CCCEEEEEEchhhCCCCCCHHHHH-HHHHHHHHHcC----CCcCcEEEecCCCCCCHHHHHHHHHHHhCCCeEEEECCCC
Confidence 568899999988753221112222 232 2233222 111256778888774432 366899999999
Q ss_pred CChhHHhhhhcccc-----ceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCC--CCcccHHHHH
Q psy1007 376 VGKSSLMNFLCQKQ-----ISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT--SDIIETEGNL 437 (445)
Q Consensus 376 vGKSsLln~l~~~~-----~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~--~~~~e~~~i~ 437 (445)
||||||+|+|++.. ...++..|+||++.....+ + ..+.++||||+.... .+.++...+.
T Consensus 165 vGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~--~-~~~~l~DtPG~~~~~~~~~~l~~~~l~ 230 (360)
T TIGR03597 165 VGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL--D-DGHSLYDTPGIINSHQMAHYLDKKDLK 230 (360)
T ss_pred CCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe--C-CCCEEEECCCCCChhHhhhhcCHHHHh
Confidence 99999999999853 3467899999998876443 2 234799999998543 2334444444
No 33
>PRK13796 GTPase YqeH; Provisional
Probab=99.22 E-value=3.1e-11 Score=123.35 Aligned_cols=111 Identities=28% Similarity=0.347 Sum_probs=73.1
Q ss_pred CCeEEEeeeccccccCCChhHHHHHHHHHHHHHHHHhhccCcceeeeccccccccc----------ccCcEEEEEcCCCC
Q psy1007 307 GIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRI----------RSGIKSVIVGEPNV 376 (445)
Q Consensus 307 gi~~vIvl~k~e~~~Dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~----------~~~~~v~lvG~~~v 376 (445)
+.++++|+||+|++..-...+.. ++|+..+.+. ......+++.+|+..+..+ .++.++.++|.|||
T Consensus 96 ~kpviLViNK~DLl~~~~~~~~i-~~~l~~~~k~---~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~~~~~v~vvG~~Nv 171 (365)
T PRK13796 96 NNPVLLVGNKADLLPKSVKKNKV-KNWLRQEAKE---LGLRPVDVVLISAQKGHGIDELLEAIEKYREGRDVYVVGVTNV 171 (365)
T ss_pred CCCEEEEEEchhhCCCccCHHHH-HHHHHHHHHh---cCCCcCcEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEcCCCC
Confidence 56889999998875321111122 2333332221 1111125777888876433 25678999999999
Q ss_pred ChhHHhhhhcccc-----ceeeecCCCccceEEEEEEEECCeeEEEEECCCCC
Q psy1007 377 GKSSLMNFLCQKQ-----ISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424 (445)
Q Consensus 377 GKSsLln~l~~~~-----~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~ 424 (445)
|||||+|+|++.. ...++..||||++.....+. ++ ..++||||+.
T Consensus 172 GKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~-~~--~~l~DTPGi~ 221 (365)
T PRK13796 172 GKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLD-DG--SFLYDTPGII 221 (365)
T ss_pred cHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcC-CC--cEEEECCCcc
Confidence 9999999998542 33468999999998775543 22 3799999996
No 34
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.21 E-value=2.3e-11 Score=124.13 Aligned_cols=78 Identities=37% Similarity=0.448 Sum_probs=68.4
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCCCCcccHHHHHHHHHhh
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKNNQ 443 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~~~~e~~~i~~~~~~~ 443 (445)
..|+++|.||||||||+|+|+++..++|++.||+|||.......|.+..+.++||+|+.+.+.+.+.+.-.+.+..++
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999999999999999999999999999996665666666555555554
No 35
>KOG2770|consensus
Probab=99.20 E-value=5.9e-11 Score=115.92 Aligned_cols=156 Identities=19% Similarity=0.158 Sum_probs=119.6
Q ss_pred CceEEEEEEecccHHHHHHHhcCCCCCCCCCCceeEEeeeecCCCCceecceEEEeecc---------------------
Q psy1007 39 KCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR--------------------- 97 (445)
Q Consensus 39 ~~ai~viRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~iD~~i~~~~~~--------------------- 97 (445)
.|=..-+||||+|+..+++.+++ .|...++|++-....|.||. |.+|||.|+..+..
T Consensus 74 VSHmlq~~v~G~d~v~fLes~tt-ad~~~L~~g~GtlsvFtne~-ggiiDd~ii~k~~~~~ly~VsnAgC~ekd~~~~k~ 151 (401)
T KOG2770|consen 74 VSHMLQSRVSGKDRVAFLESLTT-ADFEGLPEGSGTLSVFTNET-GGIIDDLIITKVDENELYIVSNAGCQEKDEALLKD 151 (401)
T ss_pred ehhheeeeecccchhHHhhhccc-cchhccCCCCceeEEEEcCC-CceeeeeEEEeecCCEEEEEeccchHHHHHHHHHH
Confidence 34455689999999999999998 55677889999999999986 67999998876654
Q ss_pred --------------cccCcceEeeccCCChHHHhhhhccC--CCCCCCCCeEEEeeeeecCCCCeeecCceeeecCCCCC
Q psy1007 98 --------------HGKCGVSVIRVSGPDTLNALKSMACY--PDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNS 161 (445)
Q Consensus 98 --------------~~~~giavIrisGp~a~~il~~l~~~--~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~~f~~p~s 161 (445)
....+-+.+++|||.+..++++++.+ ++...+|-++.++. +. ++-..+..+.+
T Consensus 152 ~~~a~ks~gkDv~~~~~~~r~l~A~Qgp~~akvlq~l~~k~~DL~~l~fg~~~~~~-~~----------G~~~~~vtr~g 220 (401)
T KOG2770|consen 152 HFFAWKSKGKDVSWETLDGRSLLALQGPEAAKVLQKLLSKLGDLSKLPFGQSQVYD-FK----------GGPGCRVTRGG 220 (401)
T ss_pred HHHhhhhccceeeEEEecccchhhhcChHHHHHHHHhhccccchhcccccceEEEE-ec----------CCCceEEeccc
Confidence 11236678999999999999999873 33233454554331 11 11224567899
Q ss_pred cCCCceeEEEecCcHHHHHHHHHHHhcCCCcccccCCcccchhhhccc
Q psy1007 162 FTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNK 209 (445)
Q Consensus 162 yTGEd~~Ei~~hg~~~v~~~i~~~l~~~~g~r~a~~Gef~~ra~~n~k 209 (445)
|||||+|||.++-+-+|- +|+.|++.++++|+++|.-.+-...-|.
T Consensus 221 ytgEDGfeisv~~~~Av~--la~~LLa~~~vkp~Gl~ArDsLRLeaGK 266 (401)
T KOG2770|consen 221 YTGEDGFEISVPPEGAVD--LAETLLANPVVKPAGLGARDSLRLEAGL 266 (401)
T ss_pred cccCCceEEecCCchhHH--HHHHHhhCCceeecccchhhhhhhhcCC
Confidence 999999999999999955 9999999999999999987766665553
No 36
>COG1159 Era GTPase [General function prediction only]
Probab=99.19 E-value=4e-11 Score=116.40 Aligned_cols=74 Identities=34% Similarity=0.500 Sum_probs=63.3
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCCCCcccHHHHHHHHH
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKN 441 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~~~~e~~~i~~~~~ 441 (445)
.|+++|.||||||||+|+++|.+.+++|+.+.|||+........+..++.++||||+.+. ...+.+.-...+..
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p-k~~l~~~m~~~a~~ 81 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP-KHALGELMNKAARS 81 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc-chHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999989999999999999954 44454444444443
No 37
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.18 E-value=7.9e-11 Score=100.19 Aligned_cols=60 Identities=42% Similarity=0.702 Sum_probs=53.8
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
+|+++|.+|+|||||+|+|++.+...++..+++|++.....+.+++..+.++||||+.+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~ 60 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDG 60 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSS
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCccc
Confidence 589999999999999999999777778899999999977778889999999999999844
No 38
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.17 E-value=1.6e-10 Score=113.21 Aligned_cols=72 Identities=29% Similarity=0.324 Sum_probs=62.4
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCCCCcccHHHH
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGN 436 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~~~~e~~~i 436 (445)
...++++.|+||||||||++++++.+. ++.++|+||.....+++..++..++++||||+-+.+.+....++.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~ 238 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIER 238 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHH
Confidence 457899999999999999999999875 578999999999999999999999999999998776655544443
No 39
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional
Probab=99.15 E-value=2e-10 Score=117.67 Aligned_cols=164 Identities=19% Similarity=0.194 Sum_probs=114.8
Q ss_pred CcEEEEccCCC---CceEEEEEEecccHHHHHHHhcCCCCCCCCCCceeEEeeeecCCCCceecceEEEeecc-------
Q psy1007 28 NTIFALSSGHG---KCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR------- 97 (445)
Q Consensus 28 dtI~A~at~~g---~~ai~viRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~iD~~i~~~~~~------- 97 (445)
+.--|+.+..| .|..++|+||||||.++|+.+++ +|.+.++++++.|+.++|+. |.++||.+++....
T Consensus 43 ~E~~avr~~a~l~Dls~~~~i~v~G~Da~~fLq~~~t-ndi~~l~~g~~~y~~~ln~~-G~i~~d~~v~r~~d~~~L~~~ 120 (370)
T PRK13579 43 KEHLHTRAHAGLFDVSHMGQIEVSGKDAAAALERLVP-VDILALKEGRQRYTFFTNEQ-GGILDDLMVTNLGDHLFLVVN 120 (370)
T ss_pred HHHHHHHhccEEEECCCcEEEEEECCCHHHHHHHhcc-ccCCCCCCCCEEEeEEECCC-CeEEEeEEEEEECCeEEEEEC
Confidence 34455566555 56789999999999999999998 56677889999999999987 78999999886643
Q ss_pred ---------------------cccCcceEeeccCCChHHHhhhhccCCCCCCCCCeEEEeeeeecCCCCeeecCceeeec
Q psy1007 98 ---------------------HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWF 156 (445)
Q Consensus 98 ---------------------~~~~giavIrisGp~a~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~~f 156 (445)
...+..+++.|+||.+..++++++. ... ..+...+....++ +. -.+
T Consensus 121 ~~~~~~~~~~l~~~~~~~V~i~d~~~~~~l~l~GP~a~~il~~l~~-~~~--~~~~~~~~~~~~~---g~-------~~~ 187 (370)
T PRK13579 121 AACKDADIAHLREHLSDECEVNPLDDRALLALQGPEAEAVLADLGP-PVA--ALRFMDGFEPRLH---GV-------DCF 187 (370)
T ss_pred cCCHHHHHHHHHHhCCCCcEEEECCCcEEEEEECcCHHHHHHHhhh-hhh--cCCCceEEEEEEC---Ce-------EEE
Confidence 0123578999999999999999863 211 1221111111111 10 134
Q ss_pred CCCCCcCCCceeEEEecCcHHHHHHHHHHHhcCCCcccccCCcccchhhhcc
Q psy1007 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNN 208 (445)
Q Consensus 157 ~~p~syTGEd~~Ei~~hg~~~v~~~i~~~l~~~~g~r~a~~Gef~~ra~~n~ 208 (445)
.++.+||||+++||+++.+.+ ..+|+.|....|+++++.+....-...+|
T Consensus 188 i~R~~~~Ge~G~el~~~~~~~--~~l~~~l~~~~g~~~~G~~a~~~lRiE~G 237 (370)
T PRK13579 188 VSRSGYTGEDGFEISVPADAA--EALAEALLADPRVEPIGLGARDSLRLEAG 237 (370)
T ss_pred EEEeeecCCCEEEEEEcHHHH--HHHHHHHHccCCceEechhhhhHHHhhcC
Confidence 567789999999999987554 67999998754777776555433333333
No 40
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.13 E-value=4.5e-10 Score=118.75 Aligned_cols=62 Identities=42% Similarity=0.667 Sum_probs=56.1
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
..+++++|.||||||||+|+|++..+..+++.++||++.....+.+++.++.+|||||++..
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~ 272 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRR 272 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCcccc
Confidence 36999999999999999999999887677899999999998888889999999999998643
No 41
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.09 E-value=9.5e-10 Score=114.68 Aligned_cols=123 Identities=32% Similarity=0.448 Sum_probs=84.3
Q ss_pred ccCCeEEEeeeccccccCCChhHHHHHHHHHHHHHHHHhhccCcceeeecccccccccc---------------------
Q psy1007 305 RSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIR--------------------- 363 (445)
Q Consensus 305 ~~gi~~vIvl~k~e~~~Dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~--------------------- 363 (445)
+.+.++++|.||+|.... +.. ..+ +.+.+ .-+++.+|+..+..+.
T Consensus 105 ~~~~piilVvNK~D~~~~---~~~----~~~-~~~lg------~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~~~~~~~ 170 (429)
T TIGR03594 105 KSGKPVILVANKIDGKKE---DAV----AAE-FYSLG------FGEPIPISAEHGRGIGDLLDAILELLPEEEEEEEEED 170 (429)
T ss_pred HhCCCEEEEEECccCCcc---ccc----HHH-HHhcC------CCCeEEEeCCcCCChHHHHHHHHHhcCcccccccccC
Confidence 357899999999775321 111 111 11221 1245666666553221
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCCC--CcccHHHHHHHHH
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS--DIIETEGNLLEKN 441 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~--~~~e~~~i~~~~~ 441 (445)
..++++++|.+|+|||||+|+|++.....+++.++||++.....+..++..+.+|||||+++... +.+|.....++..
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 23689999999999999999999988777788999999998888888898999999999975432 2244444444443
No 42
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP. TrmE is homologous to the tetrahydrofolate-binding domain of N,N-dimethylglycine oxidase and indeed binds formyl-tetrahydrofolate. TrmE actively participates in the formylation reaction of uridine and regulates the ensuing hydrogenation reaction of a Schiff's base intermediate. This B chain is the N-terminal portion of the protein consisting of five beta-strands and three alpha helices and is necessary for mediating dimer formation within the protein []. ; PDB: 1XZQ_B 1XZP_A 3GEE_A 3GEI_B 3GEH_A.
Probab=99.08 E-value=1e-10 Score=98.84 Aligned_cols=112 Identities=21% Similarity=0.210 Sum_probs=84.1
Q ss_pred eEEEeecccccCcceEeeccCCChHHHhhhhccCCCCCCCCCeEEEeeeeecCCCCeeecCceeeecCCCCCcCCC--ce
Q psy1007 90 GLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGE--DC 167 (445)
Q Consensus 90 ~i~~~~~~~~~~giavIrisGp~a~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~~f~~p~syTGE--d~ 167 (445)
+|+++.++.+.++++|||||||++++++++++.+.. .+|+++++. ..| -+++ |-
T Consensus 1 TI~AlaT~~g~~aiaiIRiSG~~a~~i~~~~~~~~~----~~r~~~~~~--------~~~------------~~~~~iDe 56 (114)
T PF10396_consen 1 TIAALATPPGRSAIAIIRISGPDALEIAQKLFGKSP----KPRRAYYGT--------IYD------------EDGEPIDE 56 (114)
T ss_dssp -EEEE-S-SSC-SEEEEEEESTTHHHHHHTTESSST----TTTEEEEEE--------EEC------------SSTCEEEE
T ss_pred CEEEECCCCCCceEEEEEeEcHHHHHHHHHHhCccc----cCcEEEEEE--------EEc------------CCCccccc
Confidence 478899999999999999999999999999995443 688887753 222 1233 33
Q ss_pred eEEEecCcHHHHHHHHHHHhcCCCcccccCCcccchhhhccccchhhhhhHHHHHHcccHHHHHHHHHhcc
Q psy1007 168 CEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMK 238 (445)
Q Consensus 168 ~Ei~~hg~~~v~~~i~~~l~~~~g~r~a~~Gef~~ra~~n~k~dl~~ae~~~~li~A~~~~~~~~al~~~~ 238 (445)
+.+.+.-+|. ++||++.+|.+.|+..+.++..++.+... ..+.|+++||+++||.+.+
T Consensus 57 ~lv~~f~~P~----------SyTGEd~vEi~~HGg~~v~~~il~~l~~~---G~R~A~pGEFT~RAflNGK 114 (114)
T PF10396_consen 57 VLVLYFPAPR----------SYTGEDVVEIHCHGGPAVVRRILEALLKA---GARLAEPGEFTRRAFLNGK 114 (114)
T ss_dssp EEEEEEBTTC----------SSSSSEEEEEEEESSHHHHHHHHHHHHHT---T-EE--TTHHHHHHHHTTS
T ss_pred eeEEeecCCC----------cccCCCEEEEEcCCCHHHHHHHHHHHHHc---CceEcCCchhhHHHHhcCC
Confidence 3456666666 99999999999999999999988887544 6899999999999998753
No 43
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.07 E-value=9.1e-10 Score=110.66 Aligned_cols=59 Identities=41% Similarity=0.585 Sum_probs=51.8
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT 427 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~ 427 (445)
+++.++|.|||||||++|+|++.....++..||+|.+.+...+. ..+.|+||||+....
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~---~~i~LlDtPGii~~~ 191 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD---DGIYLLDTPGIIPPK 191 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC---CCeEEecCCCcCCCC
Confidence 78999999999999999999999988999999999999876665 236899999998443
No 44
>TIGR00528 gcvT glycine cleavage system T protein. Eukaryotic forms are mitochondrial and have an N-terminal transit peptide.
Probab=99.07 E-value=7.8e-10 Score=113.01 Aligned_cols=164 Identities=20% Similarity=0.292 Sum_probs=113.5
Q ss_pred CCcEEEEccCCC---CceEEEEEEecccHHHHHHHhcCCCCCCCCCCceeEEeeeecCCCCceecceEEEeecc------
Q psy1007 27 KNTIFALSSGHG---KCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR------ 97 (445)
Q Consensus 27 ~dtI~A~at~~g---~~ai~viRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~iD~~i~~~~~~------ 97 (445)
.+.--|+.++.| .|..++|+|||||+.++|+.+++ +|.+.++++++.|+.++|+. |.++||.+++....
T Consensus 33 ~~E~~a~r~~~~l~dls~~~~i~vsG~Da~~fLq~~~t-~di~~l~~g~~~~~~~l~~~-G~i~~d~~v~r~~~d~~~l~ 110 (361)
T TIGR00528 33 IDEHHAVRTDAGLFDVSHMGIVDLSGSRSLEFLQRLLP-NDVAALTPGKAQYSVLLNPQ-GGVVDDLIIYYFGEDRFRLV 110 (361)
T ss_pred HHHHHHHHhhCcEEECCCcEEEEEECCCHHHHHhHhcc-cccccCCCCCEEEEEEECCC-CeEEEEEEEEEecCCEEEEE
Confidence 445556666655 56679999999999999999998 56677889999999999987 78999999887643
Q ss_pred ------------------------cccCcceEeeccCCChHHHhhhhccCCCCCCCCCeEEEeeeeecCCCCeeecCcee
Q psy1007 98 ------------------------HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLC 153 (445)
Q Consensus 98 ------------------------~~~~giavIrisGp~a~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~ 153 (445)
......+++-|+||++..++++++.....+. ++.. +. ...+.. +. +
T Consensus 111 ~~~~~~~~~~~~l~~~~~~~v~i~~~t~~~~~l~l~GP~a~~~l~~l~~~~~~~~-~~~~-~~-~~~~~~-g~---~--- 180 (361)
T TIGR00528 111 VNAATREKDLSWITEHAEPFGIEDTQSDDISLLAVQGPKAATILNPLQDQAVEGL-KPFF-FV-QEADFS-GR---K--- 180 (361)
T ss_pred ECCccHHHHHHHHHHhCcCCcEEEECcCCEEEEEeECcCHHHHHHHhcccchhhc-cccc-ce-eEEEEC-Cc---e---
Confidence 1122467899999999999999875332110 1100 00 011111 10 0
Q ss_pred eecCCCCCcCCCceeEEEecCcHHHHHHHHHHHhcCCCcccccCCcccchhh
Q psy1007 154 LWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAF 205 (445)
Q Consensus 154 ~~f~~p~syTGEd~~Ei~~hg~~~v~~~i~~~l~~~~g~r~a~~Gef~~ra~ 205 (445)
.+.++.+||||+++||+++... ...+|+.|.+..|+++++...+.....
T Consensus 181 -~~i~r~~~~ge~g~el~~~~~~--~~~l~~~l~~~gg~~~~g~~a~~~lRi 229 (361)
T TIGR00528 181 -AFIARTGYTGEDGYEIALPNEK--AADFWRALVEAYGVKPCGLGARDTLRL 229 (361)
T ss_pred -EEEEEcceeCCCeEEEEecHHH--HHHHHHHHHhcCCcEEcchhhhhhhHh
Confidence 1344678999999999999654 578999988754667776555433333
No 45
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.06 E-value=2.5e-09 Score=111.85 Aligned_cols=63 Identities=48% Similarity=0.693 Sum_probs=56.6
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
..++++++|.+|+|||||+|+|++.....+++.++||++.....+..++..+.+|||||++..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~ 234 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRK 234 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCC
Confidence 358999999999999999999999887778899999999988888889989999999999744
No 46
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase 2.1.2.10 from EC that catalyses the following reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein ; GO: 0004047 aminomethyltransferase activity, 0006546 glycine catabolic process, 0005737 cytoplasm; PDB: 3TFJ_B 3TFI_B 3TFH_A 1YX2_B 3GIR_A 3A8K_D 3A8I_B 3A8J_C 1VLO_A 1WOO_A ....
Probab=99.03 E-value=1.4e-09 Score=102.47 Aligned_cols=151 Identities=23% Similarity=0.208 Sum_probs=105.2
Q ss_pred ceEEEEEEecccHHHHHHHhcCCCCCCCCCCceeEEeeeecCCCCceecceEEEeecc----------------------
Q psy1007 40 CGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR---------------------- 97 (445)
Q Consensus 40 ~ai~viRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~iD~~i~~~~~~---------------------- 97 (445)
|..++|||+||||.++|+.+++ +|.+.+.++++.|+.++|+. |.+++++.++....
T Consensus 5 s~~~~i~v~G~Da~~fLq~~~t-~di~~l~~g~~~~~~~l~~~-G~v~~d~~v~~~~~~~~~l~~~~~~~~~~~~~L~~~ 82 (211)
T PF01571_consen 5 SHRGVIRVSGPDAAKFLQGLLT-NDISKLPPGQARYTLFLNPK-GRVLDDFFVYRLGDDEFLLIVPASAADALLEWLKKY 82 (211)
T ss_dssp TTSEEEEEESTTHHHHHHHHBS-S-GTTS-TTBEEEEEEE-TT-S-EEEEEEEEEEETTEEEEEECCTCHHHHHHHHHHH
T ss_pred CCcEEEEEECCCHHHHHHHhhh-hhHHhhCCCceeEEEEECCC-CcEEEEEEEEeecCceEEEEecchhHHHHHHHHHHh
Confidence 5578999999999999999998 56677889999999999987 78999999887766
Q ss_pred ---------cccCcceEeeccCCChHHHhhhhccCCCCCCCCCeEEEeeeeecCCCCeeecCceeeecCCCCCcCCCcee
Q psy1007 98 ---------HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCC 168 (445)
Q Consensus 98 ---------~~~~giavIrisGp~a~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~~f~~p~syTGEd~~ 168 (445)
......+++.++||.+..++++++....++.++..... . .+ +. ++..+.+||||.++
T Consensus 83 ~~~~~v~i~~~~~~~~~~~l~Gp~a~~~l~~~~~~~~~~~~~~~~~~--~-~~---~~--------~~~~r~~~~g~~g~ 148 (211)
T PF01571_consen 83 ILRSDVEIEDVSDDLAVLGLQGPKAAEVLQKLFDEDIEPLPFFSSRE--V-GD---GP--------VLVARTGRTGELGY 148 (211)
T ss_dssp HHHSS-EEEEETTTEEEEEEESTTHHHHHHHHSSSSGTTSHTTBEEE--E-ET---TE--------EEEESCBSSSSSEE
T ss_pred ccccCcEEEEcccceeEEEEEcchhhHHHHHhcccccccccccceee--e-cC---ce--------EEEEecccCCCCCE
Confidence 22234889999999999999999854332222222211 1 11 11 34566789999999
Q ss_pred EEEecCcHHHHHHHHHHHhcC---CCcccccCCcccchhhhcc
Q psy1007 169 EFQVHGSIAVINAILGALTKL---PGLRPAEPGEFSKRAFFNN 208 (445)
Q Consensus 169 Ei~~hg~~~v~~~i~~~l~~~---~g~r~a~~Gef~~ra~~n~ 208 (445)
||+++.+.+ ..+|+.|.+. .|+++++.-.+-.....+|
T Consensus 149 ~l~~~~~~~--~~~~~~l~~~g~~~g~~~~g~~~~~~lRie~G 189 (211)
T PF01571_consen 149 ELIVPAEEA--EALWDALLEAGKDFGVRPAGLEAWEALRIEAG 189 (211)
T ss_dssp EEEEEGGGH--HHHHHHHHHHHGGGTEEEEEHHHHHHHHHHTT
T ss_pred EEEeccchh--HHHHHHHHHHHhccCceeccHHHHHHHHHhcC
Confidence 999987776 6788888532 1566664444433333333
No 47
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.02 E-value=1.5e-09 Score=124.19 Aligned_cols=162 Identities=19% Similarity=0.164 Sum_probs=113.7
Q ss_pred cEEEEccCCC---CceEEEEEEecccHHHHHHHhcCCCCCCCCCCceeEEeeeecCCCCceecceEEEeecc--------
Q psy1007 29 TIFALSSGHG---KCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR-------- 97 (445)
Q Consensus 29 tI~A~at~~g---~~ai~viRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~iD~~i~~~~~~-------- 97 (445)
..-|+.+..| .|..+.|+|+||||.++|+++++ ++.+.++++++.|+.++|+. |.++||.+++.+..
T Consensus 638 E~~avR~~vgl~D~S~~g~i~V~G~DA~~fL~~~~t-ndi~~l~~G~~~yt~~l~~~-G~i~dD~~v~r~~ed~~~l~~~ 715 (985)
T TIGR01372 638 ECKAVRESVGLFDASTLGKIEVQGPDAAEFLNRVYT-NAFTKLKVGKARYGLMLRED-GMVFDDGVTSRLAEDRFLMTTT 715 (985)
T ss_pred HHHHHHhceEEEECCCcEEEEEECcCHHHHHhhhcc-cccCcCCCCCEEEeEEECCC-CeEEEeEEEEEEeCCEEEEEeC
Confidence 3445666665 67789999999999999999998 56677889999999999986 78999999998754
Q ss_pred ---------------cc------------cCcceEeeccCCChHHHhhhhcc-CCCCCCCCCeEEEeeeeecCCCCeeec
Q psy1007 98 ---------------HG------------KCGVSVIRVSGPDTLNALKSMAC-YPDQKVSKPRYASLRNIVDPVSEVVLD 149 (445)
Q Consensus 98 ---------------~~------------~~giavIrisGp~a~~il~~l~~-~~~~~~~~~rra~~~~~~d~~~~~~~d 149 (445)
.. ....+++.|+||++..++++++. ........+...+....++ +
T Consensus 716 ~~~~~~~~~~L~~~~~~~~~~~~V~i~d~t~~~a~i~l~GP~s~~vl~~l~~~~dl~~~~~~~~~~~~~~~~---g---- 788 (985)
T TIGR01372 716 TGGAARVLQHLEEWLQTEWPELDVYLTSVTDQWATLAVSGPKARDLLAELVDGLDLSNEAFPFMAIKEGTLA---G---- 788 (985)
T ss_pred CcCHHHHHHHHHHhhhhccCCCCEEEEECCCCEEEEEEECHhHHHHHHHhcCcccCccccCCCceeEEEEEC---C----
Confidence 10 12367899999999999999874 2221111222222111111 1
Q ss_pred CceeeecCCCCCcCCCceeEEEecCcHHHHHHHHHHHhcCC---CcccccCCcccchh
Q psy1007 150 EGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLP---GLRPAEPGEFSKRA 204 (445)
Q Consensus 150 ~~~~~~f~~p~syTGEd~~Ei~~hg~~~v~~~i~~~l~~~~---g~r~a~~Gef~~ra 204 (445)
. -.+..+.|||||+++||+++.+.+ ..+|+.|.+.- |+++++.+....-.
T Consensus 789 -~--~~~i~R~~~tGE~GyEi~~p~~~~--~~l~~~L~~aG~~~g~~p~G~~a~~~lR 841 (985)
T TIGR01372 789 -V--PARLFRISFSGELAFEVNVPADYG--EAVWEALMEAGQPFGITPYGTETMHVLR 841 (985)
T ss_pred -c--EEEEEeccccCCceEEEEecHHHH--HHHHHHHHhcchhcCceEcchhhhhhhh
Confidence 0 123457899999999999997765 67999998641 46666555443333
No 48
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.02 E-value=8.3e-10 Score=108.29 Aligned_cols=60 Identities=38% Similarity=0.561 Sum_probs=52.8
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
+|+++|+||||||||+|+|++.+...+++.++||++........++.++.+|||||+.+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~ 61 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEK 61 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCC
Confidence 589999999999999999999998888999999999877666666778889999999844
No 49
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.01 E-value=2.6e-09 Score=118.32 Aligned_cols=61 Identities=39% Similarity=0.703 Sum_probs=55.7
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
.+++++|.||||||||+|+|++.+...+++.++||++.....+.+++.++.+|||||+.+.
T Consensus 451 ~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~ 511 (712)
T PRK09518 451 RRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRR 511 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccC
Confidence 6999999999999999999999987777889999999998888889999999999998743
No 50
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.99 E-value=1.9e-09 Score=95.08 Aligned_cols=73 Identities=62% Similarity=0.878 Sum_probs=59.2
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCCCCcccHHHHHH
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLL 438 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~~~~e~~~i~~ 438 (445)
|++++++|++|+|||||+|++++.....++..+++|.++....+.+++.++.+|||||+.+.. ...+...+.+
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-~~~~~~~~~~ 73 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETE-DEIEKIGIER 73 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCc-chHHHHHHHH
Confidence 678999999999999999999998876667788999998888888888899999999998443 3344444433
No 51
>PRK15494 era GTPase Era; Provisional
Probab=98.96 E-value=1.7e-09 Score=109.55 Aligned_cols=61 Identities=38% Similarity=0.556 Sum_probs=55.6
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
.++++++|+||||||||+|+|++..+..+++.++||++.....+..++.++.+|||||+.+
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~ 112 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFE 112 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCC
Confidence 3589999999999999999999999888888899999988888888999999999999964
No 52
>KOG1424|consensus
Probab=98.96 E-value=2e-09 Score=110.72 Aligned_cols=56 Identities=39% Similarity=0.496 Sum_probs=50.8
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~ 424 (445)
.+|.+||.|||||||+||+|.|.+.-.||..||.|+++++..+. ..+.|+|+||+-
T Consensus 315 vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls---~~v~LCDCPGLV 370 (562)
T KOG1424|consen 315 VTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS---PSVCLCDCPGLV 370 (562)
T ss_pred eEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC---CCceecCCCCcc
Confidence 78999999999999999999999988899999999999987665 345799999997
No 53
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed
Probab=98.91 E-value=1.2e-08 Score=104.22 Aligned_cols=164 Identities=21% Similarity=0.273 Sum_probs=113.7
Q ss_pred cEEEEccCCC---CceEEEEEEecccHHHHHHHhcCCCCCCCCCCceeEEeeeecCCCCceecceEEEeecc--------
Q psy1007 29 TIFALSSGHG---KCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR-------- 97 (445)
Q Consensus 29 tI~A~at~~g---~~ai~viRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~iD~~i~~~~~~-------- 97 (445)
.--|+.+..+ .|..++|+|+||||.++|+.+++ +|.+.++++++.|+.++|+. |.++||..++...+
T Consensus 36 E~~a~r~~~~l~dls~~~~i~v~G~Da~~fLq~~~t-~dv~~l~~g~~~~~~~l~~~-G~i~~d~~v~r~~~~~~ll~~~ 113 (359)
T PRK00389 36 EHHAVRTDAGLFDVSHMGEVDVTGPDALAFLQYLLA-NDVSKLKPGKAQYTCMLNED-GGVIDDLIVYKLSEDEYLLVVN 113 (359)
T ss_pred HHHHHHhCceEEECCCcEEEEEECCCHHHHHhhhcc-cccccCCCCcEEEeEEECCC-CCEEEeEEEEEecCCEEEEEEC
Confidence 3344544443 56689999999999999999998 56677889999999999987 78999998887733
Q ss_pred -----------------------cccCcceEeeccCCChHHHhhhhccCCCCCCCCCeEEEeeeeecCCCCeeecCceee
Q psy1007 98 -----------------------HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCL 154 (445)
Q Consensus 98 -----------------------~~~~giavIrisGp~a~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~ 154 (445)
+.....+++.++||.+..++++++..+..+. .+...+....++. ..
T Consensus 114 ~~~~~~~~~~L~~~~~~~~V~i~d~~~~~~~l~l~GP~a~~~l~~~~~~~l~~~-~~~~~~~~~~~~~--~~-------- 182 (359)
T PRK00389 114 AANREKDLAWIKSHAAGFGVEVTDRSDDLAMIAVQGPKAREKLQKLTDADLSEL-KPFFGAQGAEVGG--GD-------- 182 (359)
T ss_pred cccHHHHHHHHHhhCccCCEEEEECCCCEEEEEEECccHHHHHHHhcccchhhc-cccceeeEEEECC--eE--------
Confidence 1122468999999999999999875332110 0111111111110 01
Q ss_pred ecCCCCCcCCCceeEEEecCcHHHHHHHHHHHhcCCCcccccCCcccchhhhcc
Q psy1007 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNN 208 (445)
Q Consensus 155 ~f~~p~syTGEd~~Ei~~hg~~~v~~~i~~~l~~~~g~r~a~~Gef~~ra~~n~ 208 (445)
.+.++.+||||+++|++++-+.+ ..+|+.|.+. |+++++...+......+|
T Consensus 183 ~~i~r~~~~ge~g~el~~~~~~~--~~l~~~L~~a-g~~~~g~~a~~~lrie~G 233 (359)
T PRK00389 183 VLVARTGYTGEDGFEIYLPAEDA--EALWDALLEA-GVKPCGLGARDTLRLEAG 233 (359)
T ss_pred EEEEeceecCCCeEEEEEchHHH--HHHHHHHHHc-CCeecchhHHhHHHHhcC
Confidence 13346789999999999987654 7799999876 888876655544444444
No 54
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.91 E-value=3.5e-09 Score=102.64 Aligned_cols=67 Identities=22% Similarity=0.372 Sum_probs=57.5
Q ss_pred cccccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 360 VRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 360 ~~~~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
+.....++|+++|.+|||||||+|+|++.....++...++|.........++|..+.+|||||+.+.
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLES 92 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 3445678999999999999999999999887777777778888887777888999999999999855
No 55
>PRK11058 GTPase HflX; Provisional
Probab=98.90 E-value=6.7e-09 Score=108.12 Aligned_cols=58 Identities=26% Similarity=0.347 Sum_probs=51.5
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe-eEEEEECCCCC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY-PVILLDTAGLR 424 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~-~v~l~DTpG~~ 424 (445)
.+++++|+||||||||+|+|++.+.. +++.+++|.|.....+.+++. ++.+|||||+.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~ 256 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFI 256 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCccc
Confidence 48999999999999999999998875 678899999999888888764 78899999995
No 56
>KOG2484|consensus
Probab=98.89 E-value=7.8e-09 Score=103.56 Aligned_cols=112 Identities=27% Similarity=0.390 Sum_probs=81.4
Q ss_pred cCCeEEEeeeccccccCCChhHHHHHHHHHHHHHHHHhhccCcceeeecccccc--------------------------
Q psy1007 306 SGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCG-------------------------- 359 (445)
Q Consensus 306 ~gi~~vIvl~k~e~~~Dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~-------------------------- 359 (445)
++-+.++||||+| +.+.+. .++|+.++++.+ -.+.+....+.
T Consensus 176 gnKkLILVLNK~D----LVPrEv-~e~Wl~YLr~~~-------ptv~fkast~~~~~~~~~~~~s~c~gae~l~~~lgny 243 (435)
T KOG2484|consen 176 GNKKLILVLNKID----LVPREV-VEKWLVYLRREG-------PTVAFKASTQMQNSNSKNLQSSVCFGAETLMKVLGNY 243 (435)
T ss_pred CCceEEEEeehhc----cCCHHH-HHHHHHHHHhhC-------CcceeecccccccccccccccchhhhHHHHHHHhcCc
Confidence 4488999999955 555444 448999999987 23322211111
Q ss_pred ---cccccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCCCCccc
Q psy1007 360 ---VRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIE 432 (445)
Q Consensus 360 ---~~~~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~~~~e 432 (445)
..++..+++.++|.|||||||++|+|..++.+.++..||.|+..+...+. ..+.|+|.||+--...+.-+
T Consensus 244 ~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ld---k~i~llDsPgiv~~~~~~~~ 316 (435)
T KOG2484|consen 244 CRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLD---KKIRLLDSPGIVPPSIDEKD 316 (435)
T ss_pred ccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheecc---CCceeccCCceeecCCCccc
Confidence 12346689999999999999999999999988899999999888765543 56689999999744444333
No 57
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.83 E-value=7.8e-09 Score=107.82 Aligned_cols=58 Identities=47% Similarity=0.674 Sum_probs=54.0
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~ 424 (445)
+|+++|.||||||||+|+|++...+.+++.+++|++.....+.+++..+.+|||||+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~ 58 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIE 58 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCC
Confidence 4799999999999999999998877788999999999999999999999999999986
No 58
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.83 E-value=7e-09 Score=96.69 Aligned_cols=62 Identities=24% Similarity=0.315 Sum_probs=51.8
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeec-CCCccceEEEEEEEECCeeEEEEECCCCCcCC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTS-IPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT 427 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~-~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~ 427 (445)
.+++++|.||+|||||+|++++......+. .+++|+++......++|..+.++||||+.+..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~ 63 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTS 63 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCcc
Confidence 368999999999999999999987654332 45688888888888899999999999998553
No 59
>PRK00089 era GTPase Era; Reviewed
Probab=98.78 E-value=1.7e-08 Score=99.93 Aligned_cols=60 Identities=42% Similarity=0.598 Sum_probs=52.4
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
.|+++|+||+|||||+|+|++...+.++..+.||++........++.++.+|||||+.+.
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~ 66 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKP 66 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCc
Confidence 489999999999999999999998888889999998877666656678899999999743
No 60
>KOG0084|consensus
Probab=98.77 E-value=8.8e-09 Score=94.18 Aligned_cols=62 Identities=21% Similarity=0.326 Sum_probs=53.6
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEE--EEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~~ 426 (445)
.-|+++++|++|||||+|+.+|.++.+.+ +.......|+....+.++|..++ ||||+||+++
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e-~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERF 71 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTE-SYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERF 71 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcch-hhcceeeeEEEEEEeeecceEEEEEeeeccccHHH
Confidence 34899999999999999999999998865 55556778999999999998766 9999999755
No 61
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.76 E-value=1.5e-08 Score=90.98 Aligned_cols=58 Identities=40% Similarity=0.485 Sum_probs=48.8
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
+++++|++|+|||||+|+|++.... ++..+++|.+........++.++.+|||||+.+
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 59 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPE-VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLD 59 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCc-cCCCCCcccceeEEEEccCceEEEEEECCCcCC
Confidence 6899999999999999999998763 356677888887777777778899999999963
No 62
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.73 E-value=2.6e-08 Score=87.90 Aligned_cols=58 Identities=47% Similarity=0.713 Sum_probs=50.3
Q ss_pred EEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 369 VIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 369 ~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
+++|.+|+|||||+|+|++.....++..+++|++........++..+.+|||||+.+.
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~ 58 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPD 58 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCc
Confidence 4789999999999999999875556778888988888888888889999999999854
No 63
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.72 E-value=4.5e-08 Score=87.52 Aligned_cols=62 Identities=47% Similarity=0.693 Sum_probs=53.6
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
.++++++|.+|+|||||+|+|++......++.+++|++.....+..++..+.+|||||+.+.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~ 63 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRK 63 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccc
Confidence 36899999999999999999999876666777888888887788888888899999998744
No 64
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.72 E-value=2.3e-08 Score=88.54 Aligned_cols=58 Identities=33% Similarity=0.554 Sum_probs=49.6
Q ss_pred EEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCCC
Q psy1007 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428 (445)
Q Consensus 370 lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~ 428 (445)
++|++|||||||+|++++... .++..+++|.+.....+.+++..+.+|||||+.++..
T Consensus 1 l~G~~~~GKssl~~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 58 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ-KVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSP 58 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc-cccCCCCcccccceEEEeeCCeEEEEEECCCccccCC
Confidence 579999999999999998763 4577888999988888888888889999999986543
No 65
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.71 E-value=2.8e-08 Score=98.49 Aligned_cols=63 Identities=24% Similarity=0.375 Sum_probs=51.2
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
+.++|+++|.+||||||++|+|++.....++...+++..........+|..+.+|||||+.+.
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEG 99 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCch
Confidence 458999999999999999999999887666666665555545555678999999999999853
No 66
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.71 E-value=3.6e-08 Score=103.06 Aligned_cols=60 Identities=45% Similarity=0.606 Sum_probs=55.4
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
.+|+++|.+|||||||+|+|++...+.++..+++|++.....+.+++..+.+|||||+..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~ 61 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEP 61 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCC
Confidence 479999999999999999999988777888999999999999999999999999999985
No 67
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.71 E-value=3.4e-08 Score=104.48 Aligned_cols=60 Identities=33% Similarity=0.546 Sum_probs=55.0
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~ 424 (445)
..+|+++|.||||||||+|+|++...+.+++.+++|++.....+.+++..+.+|||||+.
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~ 97 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWE 97 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcC
Confidence 368999999999999999999998877778899999999998888999999999999987
No 68
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.70 E-value=9.9e-08 Score=89.11 Aligned_cols=59 Identities=29% Similarity=0.316 Sum_probs=47.5
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe-eEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY-PVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~-~v~l~DTpG~~~ 425 (445)
++++++|++|||||||+|++++.... +...+++|.+.....+.+++. .+.+|||||+.+
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~ 101 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVY-AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIR 101 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhc-cCCccceeccceeEEEEecCCceEEEeCCCcccc
Confidence 69999999999999999999998753 345566777777666766665 888999999963
No 69
>KOG1423|consensus
Probab=98.69 E-value=3.3e-08 Score=96.09 Aligned_cols=63 Identities=32% Similarity=0.471 Sum_probs=58.6
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
+...|+++|.||||||||.|.+.+...+.+|..+.||++.....+.-+..++.++||||+-+.
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~ 133 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSK 133 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCccccc
Confidence 447899999999999999999999999999999999999999999989999999999999743
No 70
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.69 E-value=2e-08 Score=90.30 Aligned_cols=57 Identities=25% Similarity=0.291 Sum_probs=47.9
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe-eEEEEECCCCC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY-PVILLDTAGLR 424 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~-~v~l~DTpG~~ 424 (445)
.|+++|.+|+|||||+|+|.+... .++..+++|++.....+.+++. .+.+|||||+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 59 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLI 59 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCccc
Confidence 589999999999999999998765 4567778888777777777776 88899999985
No 71
>PTZ00258 GTP-binding protein; Provisional
Probab=98.67 E-value=4.7e-08 Score=100.16 Aligned_cols=63 Identities=33% Similarity=0.446 Sum_probs=53.9
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC-----------------eeEEEEECCCCC
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG-----------------YPVILLDTAGLR 424 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g-----------------~~v~l~DTpG~~ 424 (445)
...+++|+++|.||||||||+|+|++... .++++|+||++.....+.+.+ .++.++||||+.
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 35778999999999999999999988774 678999999999988887653 247899999998
Q ss_pred c
Q psy1007 425 T 425 (445)
Q Consensus 425 ~ 425 (445)
.
T Consensus 97 ~ 97 (390)
T PTZ00258 97 K 97 (390)
T ss_pred c
Confidence 4
No 72
>KOG0080|consensus
Probab=98.65 E-value=3.5e-08 Score=87.31 Aligned_cols=61 Identities=28% Similarity=0.352 Sum_probs=50.2
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCC-CccceEEEEEEEECCeeEE--EEECCCCCcCC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP-GTTRDVIEKHLDIGGYPVI--LLDTAGLRTTT 427 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~-~tt~~~~~~~~~~~g~~v~--l~DTpG~~~~~ 427 (445)
-++++++|++|||||||+.+|....+.. ..+ ....|+....+.++|..++ ||||+|++.|.
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~--~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFR 74 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDD--LHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFR 74 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCc--cCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhh
Confidence 4899999999999999999999887742 222 2467899999999998666 99999998763
No 73
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.65 E-value=4.9e-08 Score=87.01 Aligned_cols=59 Identities=31% Similarity=0.396 Sum_probs=46.3
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeE--EEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPV--ILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v--~l~DTpG~~~~ 426 (445)
++++++|++|||||||+++++.+.+. ..+.+|+.+.....+.+++..+ .+|||||++++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQF 62 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCcccc
Confidence 68999999999999999999987764 3445566666666677777654 48999998754
No 74
>KOG0394|consensus
Probab=98.65 E-value=1.7e-08 Score=91.30 Aligned_cols=62 Identities=31% Similarity=0.425 Sum_probs=52.5
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEE--EEECCCCCcCC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI--LLDTAGLRTTT 427 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~~~ 427 (445)
-++|+++|++|||||||+|++...++.. ........++.+..+.+++..+. +|||+|++.|.
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~~kF~~-qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFq 72 (210)
T KOG0394|consen 9 LLKVIILGDSGVGKTSLMNQYVNKKFSQ-QYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQ 72 (210)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHHH-HhccccchhheeeEEEEcCeEEEEEEEecccHHHhh
Confidence 4799999999999999999999998864 45556778899999999987655 99999998763
No 75
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.65 E-value=1.1e-07 Score=84.15 Aligned_cols=62 Identities=40% Similarity=0.551 Sum_probs=50.4
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
..+++++|++|+|||||+|++++.....++..+.+++..........+..+.+|||||+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 64 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKP 64 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcc
Confidence 46899999999999999999999887666666677777666666656678889999998743
No 76
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.65 E-value=6.8e-08 Score=84.18 Aligned_cols=60 Identities=48% Similarity=0.706 Sum_probs=50.2
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC--eeEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG--YPVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g--~~v~l~DTpG~~~~ 426 (445)
++|+++|.+|+|||||+|++++... ..+..++++.+.....+..++ ..+.+|||||+.++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 63 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKF-ITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDY 63 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-cCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccc
Confidence 6899999999999999999999883 446667888888887777888 66779999997644
No 77
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.64 E-value=7.9e-08 Score=97.51 Aligned_cols=60 Identities=33% Similarity=0.407 Sum_probs=52.3
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe-----------------eEEEEECCCCCc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY-----------------PVILLDTAGLRT 425 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~-----------------~v~l~DTpG~~~ 425 (445)
+++++++|.||||||||+|+|++.. ..++++|+||++.....+.+.+. ++.++||||+.+
T Consensus 2 ~~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~ 78 (364)
T PRK09601 2 GLKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVK 78 (364)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCC
Confidence 3689999999999999999999988 56789999999999888877652 478999999984
No 78
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.64 E-value=8.1e-08 Score=106.50 Aligned_cols=60 Identities=37% Similarity=0.552 Sum_probs=55.3
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
.+|+++|.||||||||+|+|++.....+++.+|+|++.......+++..+.+|||||+..
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~ 335 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA 335 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCC
Confidence 479999999999999999999988878889999999999888888999999999999883
No 79
>KOG0094|consensus
Probab=98.63 E-value=3.4e-08 Score=90.21 Aligned_cols=62 Identities=27% Similarity=0.314 Sum_probs=54.0
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEE--EEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~~ 426 (445)
+.++++++|+.+||||||+++++-+.+.. +..+....|+....+.+.|.++. +||||||+.|
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~-~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERF 84 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 84 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcc-cccceeeeEEEEEEEEEcCcEEEEEEEecccHHHH
Confidence 34899999999999999999999988754 56677889999999999888666 9999999876
No 80
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.63 E-value=7.6e-08 Score=85.70 Aligned_cols=59 Identities=24% Similarity=0.303 Sum_probs=48.8
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~ 425 (445)
++++++|++|+|||||+|++++.++.. +..++++.+.....+.+++.. +.+|||||+..
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~ 61 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDN-QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQER 61 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-cCCCceeeeEEEEEEEECCEEEEEEEEECCCcHH
Confidence 478999999999999999999988754 566777888888888887754 56999999763
No 81
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.63 E-value=7.2e-08 Score=85.48 Aligned_cols=59 Identities=36% Similarity=0.396 Sum_probs=45.5
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~~ 426 (445)
++++++|++|||||||+|+|+++++. ..+.+|+.+.....+.+++.. +.+|||||+.++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 62 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 62 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--CCcCCcchheEEEEEEECCEEEEEEEEECCCCcch
Confidence 58999999999999999999988764 344556555556666777754 448999998743
No 82
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.62 E-value=6.6e-08 Score=94.86 Aligned_cols=57 Identities=32% Similarity=0.334 Sum_probs=50.2
Q ss_pred EEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe-----------------eEEEEECCCCCc
Q psy1007 368 SVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY-----------------PVILLDTAGLRT 425 (445)
Q Consensus 368 v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~-----------------~v~l~DTpG~~~ 425 (445)
++++|.||||||||+|+|++... .++++|+||++.....+.+.+. ++.++||||+.+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~ 74 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVK 74 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCC
Confidence 47899999999999999999887 6789999999999888887654 478999999984
No 83
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.62 E-value=4.5e-08 Score=100.86 Aligned_cols=59 Identities=22% Similarity=0.254 Sum_probs=52.6
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC-eeEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG-YPVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g-~~v~l~DTpG~~~ 425 (445)
..|+|+|.||||||||+|+|++.+. .++.+|+||+......+..++ ..+.++||||+.+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~ 219 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIE 219 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccc
Confidence 4799999999999999999998774 679999999999999988864 5689999999984
No 84
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.61 E-value=5.2e-08 Score=86.70 Aligned_cols=60 Identities=22% Similarity=0.215 Sum_probs=44.8
Q ss_pred EEEEEcCCCCChhHHhhhhccccceee--ecCCCccceEEEEEEEEC-CeeEEEEECCCCCcC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIV--TSIPGTTRDVIEKHLDIG-GYPVILLDTAGLRTT 426 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~v--s~~~~tt~~~~~~~~~~~-g~~v~l~DTpG~~~~ 426 (445)
.++++|++|||||||+|+|++...... ...+++|.+.....+.++ +..+.+|||||+.++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~ 64 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKF 64 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHH
Confidence 589999999999999999997532221 223466777666666666 778889999998643
No 85
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.60 E-value=1.4e-07 Score=100.93 Aligned_cols=68 Identities=24% Similarity=0.331 Sum_probs=51.9
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCCCC
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~~ 429 (445)
+....+++++|.|||||||++|+|++.....++.....|+........++|..+.++||||+.+...+
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~d 182 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASD 182 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccc
Confidence 44557899999999999999999999876665555344444545455668899999999999965444
No 86
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.60 E-value=8.5e-08 Score=92.12 Aligned_cols=59 Identities=31% Similarity=0.398 Sum_probs=51.7
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
+++++|+||+|||||+|+|++... .+..++++|.+.....+.+++.++.+|||||+.+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~-~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~ 60 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS-EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEG 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCCCccccceEEEEEECCeEEEEEECCCcccc
Confidence 689999999999999999998764 35778899998888888889999999999998643
No 87
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.59 E-value=1e-07 Score=101.76 Aligned_cols=66 Identities=30% Similarity=0.432 Sum_probs=59.7
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCCCCccc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIE 432 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~~~~e 432 (445)
.+++++|+||||||||+|+|+|.+. .|++.||+|.+.....+...+..+.++|+||..+.+.-..+
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q-~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~D 69 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSED 69 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCc-eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCch
Confidence 5699999999999999999999875 57999999999999999999999999999999988765544
No 88
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.59 E-value=3.3e-08 Score=89.16 Aligned_cols=54 Identities=35% Similarity=0.450 Sum_probs=46.6
Q ss_pred EEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEEC-CeeEEEEECCCCC
Q psy1007 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG-GYPVILLDTAGLR 424 (445)
Q Consensus 370 lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~-g~~v~l~DTpG~~ 424 (445)
++|++|||||||+|+|++... .++..+++|.+.....+.++ +.++.+|||||+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~ 55 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLI 55 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccc
Confidence 579999999999999999876 45777888888877777777 8899999999985
No 89
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.58 E-value=1.1e-07 Score=85.23 Aligned_cols=59 Identities=31% Similarity=0.414 Sum_probs=45.9
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEE--EEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~~ 426 (445)
++++++|++|||||||+++++.+.+. ..+++|+.+.....+.+++..+. +|||||+..+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 62 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEECCCcccc
Confidence 68999999999999999999977653 44556666666666777766544 9999998753
No 90
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.58 E-value=9e-08 Score=90.59 Aligned_cols=62 Identities=26% Similarity=0.373 Sum_probs=45.3
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeee-cCCCccceEEEEEEEECCeeEEEEECCCCCcCC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVT-SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT 427 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs-~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~ 427 (445)
++++++|.+|+||||++|.+++......+ ...++|..+......++|..+.++||||+.+.+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~ 63 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSD 63 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCc
Confidence 37899999999999999999998875533 234567788888888999999999999997443
No 91
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.58 E-value=1.7e-07 Score=85.89 Aligned_cols=61 Identities=28% Similarity=0.380 Sum_probs=47.3
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcccc-ceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQ-ISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~-~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
++..+++++|++|+|||||+|+|++.. ...++..+++|.+...... + ..+.+|||||+...
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~ 77 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYA 77 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccc
Confidence 356799999999999999999999875 4455677778877664433 3 36789999998643
No 92
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.58 E-value=1.1e-07 Score=85.04 Aligned_cols=59 Identities=32% Similarity=0.399 Sum_probs=45.1
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~~ 426 (445)
++|+++|++|||||||+|++++..+. ....+|+.+.....+.+++.. +.+|||||+.++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~ 61 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFV--DDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF 61 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCcccc
Confidence 47999999999999999999987764 344456656666666677654 449999998754
No 93
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.57 E-value=1.4e-07 Score=84.07 Aligned_cols=59 Identities=36% Similarity=0.361 Sum_probs=46.1
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~~ 426 (445)
++++++|++|+|||||+|++++..+. +...+++.+.......+++.. +.+|||||+.++
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 63 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFV--TDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEF 63 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceEEEEEEECCEEEEEEEEECCCCcch
Confidence 68999999999999999999987653 455666666666666677754 558999998744
No 94
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.56 E-value=9.4e-08 Score=96.60 Aligned_cols=59 Identities=24% Similarity=0.276 Sum_probs=52.3
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEE-CCeeEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDI-GGYPVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~-~g~~v~l~DTpG~~~ 425 (445)
..|+|+|.||||||||+|+|+.... .++++++||.+.....+.+ ++..+.+|||||+.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ 218 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIE 218 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccC
Confidence 4799999999999999999998764 4689999999999999888 567899999999974
No 95
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.55 E-value=1.3e-07 Score=88.47 Aligned_cols=60 Identities=18% Similarity=0.431 Sum_probs=45.6
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
++|+++|++|||||||+++|+++++.. ...|.++.++....+.++|. .+.+|||||+.++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~-~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~ 62 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPE-EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRY 62 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCc-ccCCccccccceeEEEECCEEEEEEEEeCCCcccC
Confidence 479999999999999999999988754 33444445655556667885 4459999998754
No 96
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.55 E-value=2.1e-07 Score=86.10 Aligned_cols=59 Identities=29% Similarity=0.379 Sum_probs=49.7
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcccc-ceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQ-ISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~-~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
....|+++|.||||||||+|+|++++ .+.+|..||.|+......+. + .+.++|.||+.-
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~--~-~~~lVDlPGYGy 82 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD--D-ELRLVDLPGYGY 82 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec--C-cEEEEeCCCccc
Confidence 45689999999999999999999965 67889999999988875553 3 257999999983
No 97
>KOG0092|consensus
Probab=98.55 E-value=1.3e-07 Score=86.35 Aligned_cols=61 Identities=26% Similarity=0.371 Sum_probs=51.2
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEE--EEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~~ 426 (445)
.+|++++|+++||||||+-++..+++.. ...+.+...+.+..+.+++..+. ||||+|++..
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e-~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy 67 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHE-NIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERY 67 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCcccc-ccccccccEEEEEEEEeCCcEEEEEEEEcCCcccc
Confidence 4799999999999999999999999864 34566777888888888885555 9999999853
No 98
>KOG2485|consensus
Probab=98.55 E-value=2e-07 Score=91.04 Aligned_cols=67 Identities=39% Similarity=0.447 Sum_probs=54.2
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc-----cceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK-----QISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~-----~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~~~ 430 (445)
.+..+.++|-||||||||+|++... ..+.++..||.|+.+.......+..+++++||||+-.++...
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~ 213 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVD 213 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCC
Confidence 5689999999999999999987653 455678899999999875555577788999999998654443
No 99
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.55 E-value=2.3e-07 Score=85.70 Aligned_cols=59 Identities=29% Similarity=0.406 Sum_probs=45.8
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcccc-ceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQ-ISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~-~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
...+++++|++|+|||||+|+|++.. ...++..+++|++.....+ +.++.+|||||+..
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~ 82 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGY 82 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCC
Confidence 45789999999999999999999875 4455666777776654332 35778999999863
No 100
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.54 E-value=1.8e-07 Score=83.40 Aligned_cols=58 Identities=24% Similarity=0.385 Sum_probs=43.8
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLR 424 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~ 424 (445)
++++++|++|||||||+|+|+++.+.. ...+..+.+.....+.+++. .+.+|||||..
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCeEEEEEEEECCccH
Confidence 479999999999999999999988643 34444455555556666665 44499999975
No 101
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.53 E-value=1.7e-07 Score=84.05 Aligned_cols=59 Identities=25% Similarity=0.451 Sum_probs=46.9
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~ 425 (445)
++++++|++|||||||+|++++..+.. ...+.++.++....+..++. .+.+|||||+..
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 64 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNL-DSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQER 64 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCChHH
Confidence 589999999999999999999887643 34556666777777777775 455999999864
No 102
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.53 E-value=1.9e-07 Score=98.53 Aligned_cols=61 Identities=28% Similarity=0.252 Sum_probs=54.4
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
.-..|+|+|.||||||||+|+|++... .++++++||++.....+.+++..+.+|||||+.+
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akp-kIadypfTTl~P~lGvv~~~~~~f~laDtPGlie 218 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKP-KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIP 218 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCc-cccccCcccccceEEEEEECCeEEEEEECCCCcc
Confidence 446899999999999999999998765 4689999999999999999988999999999974
No 103
>KOG0087|consensus
Probab=98.52 E-value=1.1e-07 Score=88.06 Aligned_cols=65 Identities=25% Similarity=0.383 Sum_probs=55.7
Q ss_pred ccccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEE--EEECCCCCcC
Q psy1007 361 RIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 361 ~~~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~~ 426 (445)
.....|+++++|+|+||||-|+.+++...+.. ...+....++.+..+.+++..++ ||||+||+..
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~-~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERy 76 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERY 76 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCc-ccccceeEEEEeeceeecCcEEEEeeecccchhhh
Confidence 44566899999999999999999999998864 55666778888999999998777 9999999864
No 104
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.52 E-value=2e-07 Score=83.32 Aligned_cols=59 Identities=29% Similarity=0.393 Sum_probs=45.8
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~~ 426 (445)
++++++|++|||||||+++++.+.+.. .+.+|..+.....+.+++.. +.+|||||+..+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 62 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCchhheEEEEEEECCEEEEEEEEECCCcccc
Confidence 689999999999999999999887642 34455556666677777765 448999998754
No 105
>KOG1191|consensus
Probab=98.52 E-value=5.7e-08 Score=99.75 Aligned_cols=207 Identities=21% Similarity=0.211 Sum_probs=130.1
Q ss_pred CCceeEEeeeecC-CCCceecceEEEeecccc-cCcceEeeccCCChHHHhhhhccCCCCCCCCCeEEEeeeeecCCCCe
Q psy1007 69 KPRYASLRNIVDP-VSKVVLDEGLCLWFPRHG-KCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEV 146 (445)
Q Consensus 69 ~~~~~~~~~~~d~-~~g~~iD~~i~~~~~~~~-~~giavIrisGp~a~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~ 146 (445)
.|++.++..+.+. ..|. -.+++.+..+.+ .++++|+|+|||++..+++.|+.+..- +.++.+-+..++++. ..
T Consensus 23 ~~~~~cf~~~s~~~~~~s--~~Ti~alst~~~~~~aiai~R~sG~~a~kv~r~L~~s~~v--~~~~~~~~~~l~~~~-~r 97 (531)
T KOG1191|consen 23 HPNRLCFRLFSDAPLPGS--TATIFALSTGIGLTSAIAIFRISGPDATKVARRLLRSVMV--PKRRNAGLRALYNPE-VR 97 (531)
T ss_pred CCcchhhhccccCcCCCc--cceEEEeecCCCCCcceeEEEecCchHHHHHHHhcccccc--CCCCccccccccChh-hc
Confidence 5666666666541 1111 127788888766 999999999999999999999876431 245556666666651 11
Q ss_pred --eecC-ceeeecCCCCCcCCCceeEEEecCcHHHHHHHHHHHhcCCCcccccCCcccchhhhccccchhhhhhHHHHHH
Q psy1007 147 --VLDE-GLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQ 223 (445)
Q Consensus 147 --~~d~-~~~~~f~~p~syTGEd~~Ei~~hg~~~v~~~i~~~l~~~~g~r~a~~Gef~~ra~~n~k~dl~~ae~~~~li~ 223 (445)
..|+ ++++--.---.|-|+- +|+|++.+|...|++.|+.++.+..+-+.+..+++.
T Consensus 98 ~~~~~e~~v~~D~~l~l~~~gp~---------------------sFtgeD~~el~~hgs~avv~~~l~a~~~sg~~~ir~ 156 (531)
T KOG1191|consen 98 VYVVDEDGVTRDRALGLYFLGPQ---------------------SFTGEDVVELQTHGSSAVVVGVLTALGASGIPGIRL 156 (531)
T ss_pred ccccCCCCcchhhhhhccccCCc---------------------eeeeeeeEEEEEecCccchhhHHHHhhhccCCCccc
Confidence 1111 1111111111122222 899999999999999999999988876667889999
Q ss_pred cccHHHHHHHHHhccchHHHHHHHHHHHHHHHHhccccccccCCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy1007 224 AETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVR 303 (445)
Q Consensus 224 A~~~~~~~~al~~~~g~l~~~l~~~~~~l~~~~a~iE~~Idfse~e~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~g~~ 303 (445)
|++++++++|+.+..-.+++. ..++..|++. .-.+....+.++..+.....-.||+....
T Consensus 157 a~~geft~Raf~ngk~~Ltq~------------eg~~~lI~a~--------t~~q~~~Al~~v~g~~~~l~~~~r~~lIe 216 (531)
T KOG1191|consen 157 AEPGEFTRRAFLNGKLDLTQA------------EGIIDLIVAE--------TESQRRAALDEVAGEALALCFGWRKILIE 216 (531)
T ss_pred cCchhhhhhhhhccccchhhh------------cChhhhhhhh--------hHhhhhhhhhhhcchhHHhhhhHHHHHHH
Confidence 999999999999988555441 1111111111 11112222444445554444447765555
Q ss_pred cccCCeEEEeeeccccccCCChhHHHH
Q psy1007 304 IRSGIKSVICLASVEAYIDFSEDEIIE 330 (445)
Q Consensus 304 ~~~gi~~vIvl~k~e~~~Dl~~~~~~~ 330 (445)
+++++++.+||.++.++.
T Consensus 217 ---------~~a~l~a~idf~e~~~l~ 234 (531)
T KOG1191|consen 217 ---------ALAGLEARIDFEEERPLE 234 (531)
T ss_pred ---------HHhccceeechhhcCchh
Confidence 567788889998775543
No 106
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.52 E-value=2e-07 Score=83.68 Aligned_cols=59 Identities=24% Similarity=0.389 Sum_probs=45.8
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~ 425 (445)
++++++|++|||||||++++++..+.. ...++.+.++....+.+++. .+.+|||||+..
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 63 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 63 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcHh
Confidence 689999999999999999999887643 34455555666666777765 456999999764
No 107
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.51 E-value=1.8e-07 Score=94.31 Aligned_cols=60 Identities=23% Similarity=0.271 Sum_probs=52.7
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC-eeEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG-YPVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g-~~v~l~DTpG~~~~ 426 (445)
..|+++|.||||||||+|+|+.... .++++++||.+.....+.+++ ..+.+|||||+.+.
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~-~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~ 218 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEG 218 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCc-cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccC
Confidence 5799999999999999999998764 468889999999998888877 88899999999743
No 108
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.49 E-value=1.5e-07 Score=92.32 Aligned_cols=60 Identities=33% Similarity=0.441 Sum_probs=55.3
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
.+++++|.|+||||||+|+|++.+. ++.++++||..+....+.++|..++++|+||+-+.
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~s-eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~g 123 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKS-EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEG 123 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCc-cccccCceecccccceEeecCceEEEEcCcccccC
Confidence 5899999999999999999998774 56899999999999999999999999999998754
No 109
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.49 E-value=2.1e-07 Score=103.43 Aligned_cols=62 Identities=27% Similarity=0.364 Sum_probs=55.3
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT 427 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~ 427 (445)
.++++++|+||||||||+|+|++.+. .+++.+|+|.+.....+..++.++.+|||||+.+..
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~ 64 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccc
Confidence 36899999999999999999998765 578899999999988888888899999999998654
No 110
>PRK04213 GTP-binding protein; Provisional
Probab=98.48 E-value=1.7e-07 Score=87.18 Aligned_cols=56 Identities=39% Similarity=0.525 Sum_probs=44.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~ 424 (445)
..++++++|++|||||||+|+|++..+. ++..+++|++... +.++ .+.+|||||+.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~ 63 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNH--YDWG--DFILTDLPGFG 63 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceE--Eeec--ceEEEeCCccc
Confidence 3478999999999999999999988753 5677788877554 3333 57899999974
No 111
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.48 E-value=2.9e-07 Score=83.01 Aligned_cols=59 Identities=24% Similarity=0.392 Sum_probs=45.0
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~ 425 (445)
++++++|++|||||||+|++++..+.. ...++.+.+.....+.+++. .+.+|||||++.
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~ 64 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNP-SFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER 64 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCc-ccccCccceEEEEEEEECCEEEEEEEEeCCchHH
Confidence 689999999999999999999887643 33444455565556667765 455999999764
No 112
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.47 E-value=3.2e-07 Score=82.59 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=42.6
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~ 425 (445)
++++++|++|||||||+|+|++..+.. ...+.++.++....+..++. .+.+|||||+..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~ 62 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS-AFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQER 62 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCChHH
Confidence 689999999999999999999987642 22333334444445555554 456999999763
No 113
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.47 E-value=3.5e-07 Score=82.15 Aligned_cols=60 Identities=27% Similarity=0.338 Sum_probs=44.5
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRT 425 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~ 425 (445)
.++++++|++|+|||||++++....+.. ...+..+.+.....+.+++. .+.+|||||+..
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~ 64 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSE-RQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQER 64 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcc-cCCCccceEEEEEEEEECCEEEEEEEEECCChHH
Confidence 3799999999999999999999877643 22233344565666777774 556999999753
No 114
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.46 E-value=3.1e-07 Score=82.68 Aligned_cols=58 Identities=28% Similarity=0.476 Sum_probs=43.2
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCc-cceEEEEEEEECCee--EEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGT-TRDVIEKHLDIGGYP--VILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~t-t~~~~~~~~~~~g~~--v~l~DTpG~~~ 425 (445)
++++++|++|||||||+++|..+.+. ...++| ..++....+.+++.. +.+|||||+..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 63 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER 63 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CCCCcccceeEEEEEEEECCEEEEEEEEECCCcHH
Confidence 68999999999999999999988764 333433 344545556667654 45999999864
No 115
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.46 E-value=3.3e-07 Score=85.59 Aligned_cols=60 Identities=22% Similarity=0.265 Sum_probs=44.0
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEEC-Ce--eEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG-GY--PVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~-g~--~v~l~DTpG~~~~ 426 (445)
++|+++|++|||||||+++|++..+.. ...+..+.++....+.++ +. .+.+|||||+..+
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~-~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~ 63 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQ-HYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERF 63 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhh
Confidence 589999999999999999999887642 233334456656666666 44 4569999998643
No 116
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.46 E-value=1e-07 Score=91.88 Aligned_cols=63 Identities=29% Similarity=0.393 Sum_probs=49.5
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
+..++.+.|.+|+|||||+|+|.+.+...++..+-++..........++..+.||||||..+.
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg 100 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDG 100 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccc
Confidence 567889999999999999999998877776655545544444455567788889999999953
No 117
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.45 E-value=2.7e-07 Score=82.23 Aligned_cols=60 Identities=30% Similarity=0.398 Sum_probs=42.8
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEEC----CeeEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG----GYPVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~----g~~v~l~DTpG~~~~ 426 (445)
++|+++|++|+|||||+|++++..+.. ...+..+.+.....+.++ +..+.+|||||+.++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 64 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTK-DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF 64 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH
Confidence 479999999999999999999876642 223344455555555554 345669999997643
No 118
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.45 E-value=2.6e-07 Score=95.98 Aligned_cols=59 Identities=25% Similarity=0.300 Sum_probs=52.1
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEEC-CeeEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG-GYPVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~-g~~v~l~DTpG~~~ 425 (445)
..|+++|.||||||||+|+|++.+. .++++++||.+.....+.++ +..+.+|||||+.+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~-kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGlie 218 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIE 218 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCC-ccccCCcceeceEEEEEEEeCCceEEEEECCCCcc
Confidence 3799999999999999999998774 46889999999998888877 77899999999974
No 119
>KOG0079|consensus
Probab=98.45 E-value=7e-08 Score=84.29 Aligned_cols=60 Identities=33% Similarity=0.407 Sum_probs=51.9
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEE--EEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~~ 426 (445)
++.+++|+||||||+|+-+|..+.+.. +++..+..|+...++.++|..+. ||||+|++.|
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~-sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErF 70 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSG-SYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERF 70 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhccccc-ceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHH
Confidence 567899999999999999999998864 67777788999999999988666 9999999854
No 120
>PTZ00369 Ras-like protein; Provisional
Probab=98.45 E-value=4.1e-07 Score=84.12 Aligned_cols=60 Identities=32% Similarity=0.306 Sum_probs=45.0
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~~ 426 (445)
.++++++|++|||||||++++++..+. ..+.+|..+.....+.+++.. +.+|||||+.++
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 66 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI--DEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEY 66 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC--cCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccc
Confidence 479999999999999999999988764 234444444445566677665 448999998754
No 121
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.45 E-value=4.2e-07 Score=83.15 Aligned_cols=59 Identities=34% Similarity=0.441 Sum_probs=45.0
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~~ 426 (445)
++++++|++|||||||++++..+.+. ..+.+|..+.....+.+++.+ +.+|||||++++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~--~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 62 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEECCCccch
Confidence 58999999999999999999988773 344555555445456677754 449999999754
No 122
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.45 E-value=3.1e-07 Score=83.50 Aligned_cols=58 Identities=31% Similarity=0.485 Sum_probs=44.1
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRT 425 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~ 425 (445)
+++++|++|||||||+++++++.+.. ...+....++....+.++|.. +.+|||||+..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDK-NYKATIGVDFEMERFEILGVPFSLQLWDTAGQER 61 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEeCCChHH
Confidence 68999999999999999999987742 333444456666667677654 55999999874
No 123
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.45 E-value=4.2e-07 Score=82.01 Aligned_cols=59 Identities=34% Similarity=0.417 Sum_probs=44.7
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
++++++|++|+|||||++++.++.+. ..+.+|+.+.....+.+++. .+.+|||||+.++
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 62 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI--ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF 62 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEeCCCcccc
Confidence 68999999999999999999987763 33445555555566666664 4559999998754
No 124
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.45 E-value=3.6e-07 Score=83.96 Aligned_cols=59 Identities=22% Similarity=0.302 Sum_probs=44.4
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEE--EEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~~ 426 (445)
++++++|++|||||||++++++..+. ..+.+|..+.....+.+++..+. +|||||++.+
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~ 62 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP--ETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYY 62 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC--CCcCCceEEEEEEEEEECCEEEEEEEEECCCchhh
Confidence 58999999999999999999988774 33444444444456677776544 9999998643
No 125
>KOG0098|consensus
Probab=98.44 E-value=2.4e-07 Score=84.07 Aligned_cols=60 Identities=27% Similarity=0.378 Sum_probs=49.4
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEE--EEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~~ 426 (445)
++++++|+.|||||+|+.+++.+.+..+.+ .....++.-..+.+++.+|+ +|||+|++.+
T Consensus 7 fKyIiiGd~gVGKSclllrf~~krF~~~hd-~TiGvefg~r~~~id~k~IKlqiwDtaGqe~f 68 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKRFQPVHD-LTIGVEFGARMVTIDGKQIKLQIWDTAGQESF 68 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccCcccccc-ceeeeeeceeEEEEcCceEEEEEEecCCcHHH
Confidence 799999999999999999999998854332 33456777778888988777 9999999854
No 126
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.44 E-value=4.4e-07 Score=84.03 Aligned_cols=60 Identities=23% Similarity=0.312 Sum_probs=43.5
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~ 425 (445)
++++++|++|||||||++++.+..+......+.++.++....+.+++. .+.||||||+..
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 62 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQER 62 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHH
Confidence 479999999999999999999887642122333444555555667765 445999999753
No 127
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.44 E-value=4.1e-07 Score=85.98 Aligned_cols=58 Identities=22% Similarity=0.345 Sum_probs=45.1
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC---eeEEEEECCCCC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG---YPVILLDTAGLR 424 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g---~~v~l~DTpG~~ 424 (445)
++++++|++|||||||+|+|++..+.. ...+..+.++....+.+++ ..+.+|||||+.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~-~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~ 61 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGK-SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS 61 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcH
Confidence 479999999999999999999887643 3344455677777777753 456699999975
No 128
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.44 E-value=4.3e-07 Score=81.01 Aligned_cols=59 Identities=25% Similarity=0.382 Sum_probs=43.7
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~ 425 (445)
++++++|++|||||||+++|++..+.. ...+..+.+.....+.+++. .+.+|||||+..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~ 61 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKE-DSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQER 61 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCEEEEEEEEECcchHH
Confidence 479999999999999999999887643 23334445555556666664 455999999863
No 129
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.43 E-value=4.6e-07 Score=81.85 Aligned_cols=59 Identities=25% Similarity=0.355 Sum_probs=43.9
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~ 425 (445)
++++++|++|||||||+|++++..+.. ...+..+.++....+.+++. .+.+|||||.++
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 65 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 65 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcHH
Confidence 689999999999999999999877643 22334455555566666664 455999999763
No 130
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.43 E-value=4e-07 Score=80.95 Aligned_cols=59 Identities=29% Similarity=0.361 Sum_probs=45.1
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
++++++|++|+|||||+++++...+. ..+.+++.+........++. .+.+|||||+.+.
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 61 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDY 61 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc--cccCCcchhhEEEEEEECCEEEEEEEEECCChhhh
Confidence 58999999999999999999987764 35556666655556666654 4559999998643
No 131
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.43 E-value=4.6e-07 Score=81.37 Aligned_cols=60 Identities=22% Similarity=0.304 Sum_probs=41.4
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
++++++|++|||||||+++++...+.. ...+....+.......+++. .+.+|||||+..+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 62 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEP-QQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERF 62 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhh
Confidence 479999999999999999999877632 22222223344444555655 4559999998754
No 132
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.43 E-value=5.3e-07 Score=81.13 Aligned_cols=59 Identities=24% Similarity=0.263 Sum_probs=41.2
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
++|+++|++|||||||+|+++++.+.. .+.+|..+.....+..++. .+.+|||||+..+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRE--SYIPTIEDTYRQVISCSKNICTLQITDTTGSHQF 62 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC--CcCCcchheEEEEEEECCEEEEEEEEECCCCCcc
Confidence 689999999999999999999887632 2233333333333444443 4559999998754
No 133
>KOG0095|consensus
Probab=98.43 E-value=2.8e-07 Score=80.62 Aligned_cols=60 Identities=27% Similarity=0.349 Sum_probs=49.8
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEE--EEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~~ 426 (445)
|+++++|..||||++|+.+++.+-+.. ........++-..++.++|.+++ +|||+|++.+
T Consensus 8 fkivlvgnagvgktclvrrftqglfpp-gqgatigvdfmiktvev~gekiklqiwdtagqerf 69 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERF 69 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCC-CCCceeeeeEEEEEEEECCeEEEEEEeeccchHHH
Confidence 799999999999999999999887742 33334567888888999988776 9999999865
No 134
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.43 E-value=5.2e-07 Score=80.34 Aligned_cols=58 Identities=28% Similarity=0.424 Sum_probs=44.2
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLR 424 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~ 424 (445)
++|+++|++|+|||||++++++..+.. ...+..+.+.....+.+++. .+.+|||||..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 60 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSE-QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCChH
Confidence 579999999999999999999887632 33444555556666777774 55699999975
No 135
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.43 E-value=2.9e-07 Score=82.51 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=42.7
Q ss_pred EEEEEcCCCCChhHHhhhhccccce---eeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQIS---IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~---~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
+++++|++|+|||||+|+|++.... .......+|.......+.+++..+.+|||||+.++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 63 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESL 63 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhh
Confidence 4789999999999999999864321 00112234444555567778889999999998743
No 136
>KOG0078|consensus
Probab=98.42 E-value=3.3e-07 Score=84.91 Aligned_cols=62 Identities=23% Similarity=0.339 Sum_probs=53.5
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEE--EEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~~ 426 (445)
..++++++|++|||||+++.+|..+.+.. +.......|+....+.++|..+. +|||+|++.+
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~-~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf 74 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNT-SFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERF 74 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcC-CccceEEEEEEEEEEEeCCeEEEEEEEEcccchhH
Confidence 55899999999999999999999988753 55555678999999999998776 9999999865
No 137
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.42 E-value=3.9e-07 Score=82.15 Aligned_cols=59 Identities=31% Similarity=0.467 Sum_probs=44.1
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeE--EEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPV--ILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v--~l~DTpG~~~ 425 (445)
++++++|++|||||||++++++..+.. ...+..+.++....+.+++..+ .+|||||+.+
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~ 66 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDT-QLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER 66 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCc-CcCCceeeEEEEEEEEECCeEEEEEEEeCCChHH
Confidence 789999999999999999999877642 2334444555555666776644 4999999764
No 138
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.42 E-value=4.8e-07 Score=83.56 Aligned_cols=60 Identities=27% Similarity=0.423 Sum_probs=43.9
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCcc-ceEEEEEEEECCeeEE--EEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT-RDVIEKHLDIGGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt-~~~~~~~~~~~g~~v~--l~DTpG~~~~ 426 (445)
++|+++|++|||||||+++|+++.+.. ..+.+|. .++....+.+++..+. +|||||+.+.
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~ 63 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLV-GPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERY 63 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCC-cCcccceeeEEEEEEEEECCEEEEEEEEECCCchhh
Confidence 479999999999999999999887642 2333333 3344556777776555 9999998643
No 139
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.42 E-value=5.8e-07 Score=81.25 Aligned_cols=58 Identities=29% Similarity=0.406 Sum_probs=44.5
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~ 425 (445)
++++++|++|+|||||+++++.+.+. ..+.++..+.....+.+++.. +.+|||||...
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 60 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 60 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCccc
Confidence 47999999999999999999988764 344455555555566677765 44999999864
No 140
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.42 E-value=5.4e-07 Score=81.80 Aligned_cols=59 Identities=34% Similarity=0.386 Sum_probs=46.2
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeE--EEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPV--ILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v--~l~DTpG~~~~ 426 (445)
++++++|++|+|||||++++.+..+. ..+.+|+.+.....+.+++..+ .+|||||+.++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 61 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYP--TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEF 61 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEECCCChhh
Confidence 57999999999999999999887763 4556676677666777777544 48999998644
No 141
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.42 E-value=4.5e-07 Score=83.75 Aligned_cols=60 Identities=22% Similarity=0.315 Sum_probs=45.5
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeE--EEEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPV--ILLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v--~l~DTpG~~~~ 426 (445)
.++++++|++|||||||+++++.+.+. ..+.+|..+.....+.+++..+ .+|||+|++++
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f~--~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~ 66 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 66 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCC--CccCCceeeeeEEEEEECCEEEEEEEEECCCchhh
Confidence 368999999999999999999998874 3444454444455667777654 49999998644
No 142
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.41 E-value=5.3e-07 Score=81.03 Aligned_cols=60 Identities=22% Similarity=0.416 Sum_probs=45.0
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~~ 426 (445)
++++++|++|+|||||+++++.+.+.. ...+..+.+.....+.+++.. +.+|||||+..+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 62 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHS-SHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERY 62 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhH
Confidence 479999999999999999999887642 334444556666677777754 459999998643
No 143
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.41 E-value=5.2e-07 Score=82.21 Aligned_cols=59 Identities=27% Similarity=0.331 Sum_probs=44.3
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~~ 426 (445)
++++++|++|||||||++++.+..+. ..+.+|..+.....+.+++.. +.+|||||+.++
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 63 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFP--DYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEF 63 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--CCcCCcccceEEEEEEECCEEEEEEEEeCCCchhh
Confidence 68999999999999999999988774 233444444445556777754 449999998643
No 144
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.41 E-value=5.4e-07 Score=90.41 Aligned_cols=57 Identities=33% Similarity=0.366 Sum_probs=46.7
Q ss_pred EEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEE---------------------C---CeeEEEEECCCC
Q psy1007 368 SVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDI---------------------G---GYPVILLDTAGL 423 (445)
Q Consensus 368 v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~---------------------~---g~~v~l~DTpG~ 423 (445)
++++|.||||||||+|+|++... .++++|+||.+.......+ + +.++.+|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 47899999999999999998875 5789999998877665543 2 246789999999
Q ss_pred Cc
Q psy1007 424 RT 425 (445)
Q Consensus 424 ~~ 425 (445)
.+
T Consensus 80 v~ 81 (318)
T cd01899 80 VP 81 (318)
T ss_pred CC
Confidence 73
No 145
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.40 E-value=5.5e-07 Score=84.67 Aligned_cols=60 Identities=27% Similarity=0.408 Sum_probs=46.1
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
+.|+++|++|||||||+++|..+.+.. ...+..+.++....+.+++. .+.+|||||+..+
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~-~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~ 62 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCE-ACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERF 62 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhh
Confidence 368999999999999999999888743 23334456777777888875 4459999999753
No 146
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.40 E-value=6.2e-07 Score=79.95 Aligned_cols=58 Identities=24% Similarity=0.357 Sum_probs=42.8
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLR 424 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~ 424 (445)
++++++|++|+|||||+|++++..+.. ...+.+..++....+.+++. .+.+|||||..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~ 61 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE-NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCchH
Confidence 689999999999999999999988643 23333343444555666664 45599999975
No 147
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.39 E-value=4.5e-07 Score=83.90 Aligned_cols=57 Identities=33% Similarity=0.512 Sum_probs=42.9
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRT 425 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~ 425 (445)
+++++|++|||||||+++|+.+.+.. .+++|+.+.....+.+++.. +.+|||||+.+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 59 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE--TYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEE 59 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc--cCCCchHhhEEEEEEECCEEEEEEEEECCCchh
Confidence 47999999999999999999877643 34555555444556677765 55899999764
No 148
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.39 E-value=5.4e-07 Score=81.57 Aligned_cols=60 Identities=30% Similarity=0.462 Sum_probs=44.5
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
++++++|++|||||||+++++...+.. ...+..+.++....+.+++. .+.+|||||+.++
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 64 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPE-RTEATIGVDFRERTVEIDGERIKVQLWDTAGQERF 64 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-ccccceeEEEEEEEEEECCeEEEEEEEeCCChHHH
Confidence 689999999999999999999877532 23333444555566667774 5669999998743
No 149
>COG2262 HflX GTPases [General function prediction only]
Probab=98.38 E-value=2.4e-06 Score=86.61 Aligned_cols=76 Identities=26% Similarity=0.267 Sum_probs=61.7
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEEC-CeeEEEEECCCCCcCCCCcccHHHHHHHHHhh
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG-GYPVILLDTAGLRTTTSDIIETEGNLLEKNNQ 443 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~-g~~v~l~DTpG~~~~~~~~~e~~~i~~~~~~~ 443 (445)
..|+++|++|+|||||+|.|++.... +.+..++|.|..+..+.+. |.++.+.||-||. .+.++.--......++|+
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~~~-~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI-~~LP~~LV~AFksTLEE~ 269 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGADVY-VADQLFATLDPTTRRIELGDGRKVLLTDTVGFI-RDLPHPLVEAFKSTLEEV 269 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccCee-ccccccccccCceeEEEeCCCceEEEecCccCc-ccCChHHHHHHHHHHHHh
Confidence 48999999999999999999987754 3688899999999999887 6899999999999 556655445555555554
No 150
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.38 E-value=7.1e-07 Score=82.30 Aligned_cols=60 Identities=25% Similarity=0.386 Sum_probs=45.4
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeE--EEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPV--ILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v--~l~DTpG~~~~ 426 (445)
++++++|++|||||||+++|+++.+.. ...+....++....+.+++..+ .+|||+|+..+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~ 62 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDE-DYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREF 62 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCchhH
Confidence 479999999999999999999887743 2333344566666777787544 59999998743
No 151
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.38 E-value=4.6e-07 Score=81.14 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=44.7
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEEC---CeeEEEEECCCCCc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG---GYPVILLDTAGLRT 425 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~---g~~v~l~DTpG~~~ 425 (445)
.++++|++|+|||||+|+|++..+.. ...+++|.+.....+..+ +..+.+|||||+..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~ 62 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA 62 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccccc-ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH
Confidence 47999999999999999999877643 344566666655566654 66788999999853
No 152
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.38 E-value=8.5e-07 Score=81.47 Aligned_cols=60 Identities=30% Similarity=0.397 Sum_probs=45.2
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEE--EEECCCCCcCC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI--LLDTAGLRTTT 427 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~~~ 427 (445)
++++++|++|||||||+++++.+.+. ..+.+|..+.....+.+++..+. +|||+|+.++.
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~--~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~ 63 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYN 63 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC--CCCCCcceeeeEEEEEECCEEEEEEEEECCCCcccc
Confidence 58999999999999999999998874 23444444444555667776544 99999987653
No 153
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.37 E-value=7.2e-07 Score=81.19 Aligned_cols=59 Identities=27% Similarity=0.326 Sum_probs=41.8
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEEC------------CeeEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG------------GYPVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~------------g~~v~l~DTpG~~~ 425 (445)
++++++|++|||||||++++.+..+.. ...+..+.++....+.++ ...+.+|||||+.+
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 75 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNP-KFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQER 75 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHH
Confidence 689999999999999999999877632 223333444544444443 24566999999764
No 154
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.37 E-value=8.2e-07 Score=80.63 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=45.8
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCc-cceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGT-TRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~t-t~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
+.++++++|++|||||||+++|++..+. +..+.+| ..++....+.++|. .+.+|||+|....
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~ 67 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVA 67 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCcccc
Confidence 4589999999999999999999998874 1233444 34455556677775 4559999998743
No 155
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.37 E-value=8.7e-07 Score=79.64 Aligned_cols=59 Identities=32% Similarity=0.456 Sum_probs=43.4
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEE--EEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI--LLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~ 425 (445)
++++++|++|+|||||+|++.+..+.. ...+..+.+.....+.+++..+. +|||||+..
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 61 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVTVDDKLVTLQIWDTAGQER 61 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc-CcCCccceEEEEEEEEECCEEEEEEEEeCCChHH
Confidence 479999999999999999999877532 22333345565556667775444 999999863
No 156
>PLN03118 Rab family protein; Provisional
Probab=98.37 E-value=4.1e-07 Score=85.64 Aligned_cols=61 Identities=30% Similarity=0.420 Sum_probs=44.9
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
..++++++|++|||||||+++|++..+.. ..+.++.+.....+.+++. .+.+|||||+..+
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~ 75 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVED--LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF 75 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCC--cCCCceeEEEEEEEEECCEEEEEEEEECCCchhh
Confidence 45899999999999999999999877633 2233344555555666654 5569999998754
No 157
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.37 E-value=8.3e-07 Score=91.69 Aligned_cols=59 Identities=37% Similarity=0.475 Sum_probs=48.2
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEE---------------------CC---eeEEEEECC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDI---------------------GG---YPVILLDTA 421 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~---------------------~g---~~v~l~DTp 421 (445)
++++++|.||||||||+|+|++... .++++++||.+.......+ ++ .++.+||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~-~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADV-EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc-cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 5899999999999999999998876 4588899998888766542 12 456799999
Q ss_pred CCCc
Q psy1007 422 GLRT 425 (445)
Q Consensus 422 G~~~ 425 (445)
|+.+
T Consensus 81 Gl~~ 84 (396)
T PRK09602 81 GLVP 84 (396)
T ss_pred CcCC
Confidence 9974
No 158
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.36 E-value=9.2e-07 Score=78.78 Aligned_cols=60 Identities=27% Similarity=0.363 Sum_probs=42.2
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
++++++|++|+|||||+|+|++..+.. ...+..+.+.....+.+++. .+.+|||||+..+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 62 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP-DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF 62 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-ccCCcccceEEEEEEEECCEEEEEEEEECCCchhh
Confidence 579999999999999999999877632 23333334444444555553 5569999998643
No 159
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.35 E-value=8.9e-07 Score=80.09 Aligned_cols=58 Identities=28% Similarity=0.361 Sum_probs=42.7
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~ 425 (445)
.+++++|++|||||||+++|++..+.. .+.+|..+.....+.+++.. +.+|||||+.+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGQED 61 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccccceEEEEEECCEEEEEEEEeCCCchh
Confidence 579999999999999999999887642 33444444444456667654 45999999863
No 160
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.35 E-value=9.2e-07 Score=82.54 Aligned_cols=60 Identities=30% Similarity=0.380 Sum_probs=44.4
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRT 425 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~ 425 (445)
-++++++|++|||||||+++|.+..+.. ...+..+.+.....+.+++. .+.+|||||+..
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~ 67 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSG-SYITTIGVDFKIRTVEINGERVKLQIWDTAGQER 67 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCccccceeEEEEEEECCEEEEEEEEeCCCchh
Confidence 3789999999999999999999877632 23344444555556666664 455999999864
No 161
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.35 E-value=9.8e-07 Score=81.29 Aligned_cols=59 Identities=29% Similarity=0.338 Sum_probs=43.9
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~ 425 (445)
++++++|++|||||||+|+|++..+.. ...+..+.+.....+.+++.. +.+|||||+..
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~ 61 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE-STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQER 61 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH
Confidence 479999999999999999999887742 233444455555566676654 45999999864
No 162
>PLN03110 Rab GTPase; Provisional
Probab=98.35 E-value=8e-07 Score=84.23 Aligned_cols=61 Identities=23% Similarity=0.387 Sum_probs=47.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~ 425 (445)
..++++++|++|||||||+++|++..+.. ...++.+.++....+.+++. .+.||||||+.+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~-~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~ 73 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEECCEEEEEEEEECCCcHH
Confidence 34799999999999999999999887643 34455556776777777775 555999999864
No 163
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.34 E-value=1.1e-06 Score=79.47 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=40.4
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
++++++|++|||||||+++++...+.. ...+....+.....+..++. .+.+|||||+..+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF 62 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCChhh
Confidence 589999999999999999999766532 22222223444444444443 4559999998754
No 164
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.34 E-value=6.8e-07 Score=80.26 Aligned_cols=57 Identities=26% Similarity=0.398 Sum_probs=42.8
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRT 425 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~ 425 (445)
+++++|++|||||||+++++...+. ..+++++.+.....+.+++.. +.+|||||+..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 59 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI--GEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQ 59 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc--cccCCChHHhceEEEEECCEEEEEEEEECCCCcc
Confidence 4899999999999999999987653 344555544445556677765 45999999984
No 165
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.33 E-value=7.8e-07 Score=84.86 Aligned_cols=59 Identities=22% Similarity=0.301 Sum_probs=45.1
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEE--EEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~~ 426 (445)
++++++|++|||||||+++|+...+.. .+.+|..+.....+.+++..+. +|||+|+.++
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~--~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~ 62 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPG--SYVPTVFENYTASFEIDKRRIELNMWDTSGSSYY 62 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--ccCCccccceEEEEEECCEEEEEEEEeCCCcHHH
Confidence 589999999999999999999888743 4444544455556777776554 8999998744
No 166
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.33 E-value=1e-06 Score=81.68 Aligned_cols=60 Identities=30% Similarity=0.352 Sum_probs=44.3
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeE--EEEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPV--ILLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v--~l~DTpG~~~~ 426 (445)
.++++++|++|||||||++++..+.+.. .+.+|..+.....+.+++..+ .+|||||+..+
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~ 64 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPK--EYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEY 64 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCc--CCCCceEeeeEEEEEECCEEEEEEEEECCCchhh
Confidence 3789999999999999999999887742 334444444444556677544 49999998754
No 167
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.33 E-value=1.9e-06 Score=84.97 Aligned_cols=61 Identities=23% Similarity=0.395 Sum_probs=44.1
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeec--------CCCc-cceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTS--------IPGT-TRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~--------~~~t-t~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
++++++|++|+|||||+|+|++..+...+. ...| +.+.....+..+|. .+.+|||||+.+.
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~ 76 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDN 76 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccc
Confidence 689999999999999999999987654321 1222 24445555666774 4569999999854
No 168
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.33 E-value=1.2e-06 Score=80.01 Aligned_cols=59 Identities=31% Similarity=0.375 Sum_probs=44.0
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~~ 426 (445)
++++++|++|||||||+.+++.+.+. ..+.+|..+.....+.+++.. +.+|||||+...
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 62 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CcCCCcceeeeEEEEEECCEEEEEEEEECCCchhh
Confidence 68999999999999999999987763 334445445545556667754 459999998743
No 169
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.33 E-value=1.3e-06 Score=78.38 Aligned_cols=59 Identities=31% Similarity=0.348 Sum_probs=42.6
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
++++++|++|+|||||+|+|++..+. ....++..+........++. .+.+|||||+.++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~ 61 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP--TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEY 61 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccc
Confidence 57999999999999999999988763 23334444444445555554 4569999998753
No 170
>KOG2423|consensus
Probab=98.32 E-value=5.6e-07 Score=90.11 Aligned_cols=63 Identities=37% Similarity=0.496 Sum_probs=52.2
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCCCC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~~ 429 (445)
+.+.|.++|.||+||||++|+|-..+.+.|.+++|-|.-.+..++. ..|+|+|+||+-..+.|
T Consensus 306 kqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLm---krIfLIDcPGvVyps~d 368 (572)
T KOG2423|consen 306 KQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLM---KRIFLIDCPGVVYPSSD 368 (572)
T ss_pred cceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHH---hceeEecCCCccCCCCC
Confidence 5689999999999999999999999999999999977655544444 45689999999855543
No 171
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.32 E-value=9.7e-07 Score=85.60 Aligned_cols=59 Identities=24% Similarity=0.355 Sum_probs=46.3
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
++|+++|++|||||||+++|+++.+. ..+.+|+.++....+.+++. .+.||||+|.+.+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~--~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~ 61 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFE--EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPF 61 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCChhHhEEEEEEECCEEEEEEEEECCCChhh
Confidence 47999999999999999999988774 34556666777777777775 4459999998643
No 172
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.31 E-value=1.1e-06 Score=79.38 Aligned_cols=57 Identities=26% Similarity=0.348 Sum_probs=41.8
Q ss_pred EEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCcC
Q psy1007 368 SVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRTT 426 (445)
Q Consensus 368 v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~~ 426 (445)
++++|++|||||||+++++++.+.. .+.++..+.....+.+++.. +.+|||||+.+.
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 59 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE--DYVPTVFENYSADVEVDGKPVELGLWDTAGQEDY 59 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC--CCCCcEEeeeeEEEEECCEEEEEEEEECCCCccc
Confidence 5789999999999999999987642 33344444444556667764 559999998743
No 173
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.31 E-value=1.4e-06 Score=76.38 Aligned_cols=59 Identities=27% Similarity=0.400 Sum_probs=43.0
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC--eeEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG--YPVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g--~~v~l~DTpG~~~ 425 (445)
++++++|++|+|||||+|++.+..+.. ...+.++.+.....+..++ ..+.+|||||+..
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 61 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDE-NYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER 61 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCC-ccCCceeeeeEEEEEEECCEEEEEEEEecCChHH
Confidence 478999999999999999999887654 2233444455555555544 4566999999863
No 174
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.31 E-value=1.2e-06 Score=80.63 Aligned_cols=58 Identities=22% Similarity=0.368 Sum_probs=44.4
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
+..+++++|.+|||||||+|++.+..+..+ .+|.......+.+++..+.+|||||+..
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 73 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQH----QPTQHPTSEELAIGNIKFTTFDLGGHQQ 73 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCccc----CCccccceEEEEECCEEEEEEECCCCHH
Confidence 458999999999999999999998765432 2233344455667888888999999863
No 175
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.30 E-value=1.5e-06 Score=76.92 Aligned_cols=58 Identities=31% Similarity=0.465 Sum_probs=42.3
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLR 424 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~ 424 (445)
++++++|++|+|||||+|++++..+.. ...+.++.+.....+..++. .+.+|||||..
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 60 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchH
Confidence 479999999999999999999887643 23333444555555665555 45599999975
No 176
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.30 E-value=6.3e-07 Score=83.07 Aligned_cols=59 Identities=20% Similarity=0.269 Sum_probs=43.6
Q ss_pred cEEEEEcCCCCChhHHhhhhccc------cceeeecCCCccceEEEEEEEEC--------------CeeEEEEECCCCC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQK------QISIVTSIPGTTRDVIEKHLDIG--------------GYPVILLDTAGLR 424 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~------~~~~vs~~~~tt~~~~~~~~~~~--------------g~~v~l~DTpG~~ 424 (445)
++++++|++|+|||||+++|+.. +....+...++|.+.....+.++ +..+.+|||||+.
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH
Confidence 47999999999999999999973 11112334567777766556554 6678899999985
No 177
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.30 E-value=1.4e-06 Score=78.92 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=41.6
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
+++++|++|||||||+++|.+..+. .. .+|.......+..++..+.+|||||+.++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~~--~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~ 56 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--QP--IPTIGFNVETVEYKNLKFTIWDVGGKHKL 56 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--Cc--CCcCceeEEEEEECCEEEEEEECCCChhc
Confidence 5899999999999999999987542 22 22333333456667888889999998743
No 178
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.30 E-value=1.3e-06 Score=83.96 Aligned_cols=60 Identities=23% Similarity=0.253 Sum_probs=44.6
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEE--EEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~~ 426 (445)
.++++++|++|||||||+++|+...+.. .+.+|..+.....+.+++..+. ||||||++.+
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~--~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~ 74 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPE--TYVPTVFENYTAGLETEEQRVELSLWDTSGSPYY 74 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCC--CcCCceeeeeEEEEEECCEEEEEEEEeCCCchhh
Confidence 4799999999999999999999887743 3344433444445677776544 9999998743
No 179
>KOG0086|consensus
Probab=98.30 E-value=5.3e-07 Score=79.25 Aligned_cols=60 Identities=23% Similarity=0.359 Sum_probs=49.6
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEE--EEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~~ 426 (445)
++++++|+.|.|||+|+.+|...++.. ........++....+.++++.|+ ||||+|++.|
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkD-dssHTiGveFgSrIinVGgK~vKLQIWDTAGQErF 71 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKD-DSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERF 71 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcc-cccceeeeeecceeeeecCcEEEEEEeecccHHHH
Confidence 789999999999999999999988754 22334567888888899987666 9999999865
No 180
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.30 E-value=1.2e-06 Score=80.44 Aligned_cols=58 Identities=26% Similarity=0.304 Sum_probs=40.7
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEEC-Ce--eEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG-GY--PVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~-g~--~v~l~DTpG~~~ 425 (445)
++|+++|++|||||||+++|+++.+. ..+.+|..+.....+... +. .+.+|||||+.+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~ 61 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP--EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEE 61 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC--CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchh
Confidence 47999999999999999999988764 233344333333344444 43 456999999764
No 181
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.30 E-value=1.1e-06 Score=82.89 Aligned_cols=59 Identities=29% Similarity=0.484 Sum_probs=44.5
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEE-CCe--eEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDI-GGY--PVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~-~g~--~v~l~DTpG~~~ 425 (445)
++|+++|++|||||||+|+|++..+.. ...+.++.++....+.+ ++. .+.+|||||+..
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~-~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~ 64 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAE-VSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER 64 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCceeceEEEEEEEEECCCCEEEEEEEeCCcchh
Confidence 789999999999999999999887654 22344456666666665 343 566999999864
No 182
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.29 E-value=1.2e-06 Score=80.56 Aligned_cols=59 Identities=15% Similarity=0.308 Sum_probs=42.4
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEE---CCeeEEEEECCCCCc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDI---GGYPVILLDTAGLRT 425 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~---~g~~v~l~DTpG~~~ 425 (445)
.++++++|++|||||||+++++...+. ...+..+.+.....+.. .+..+.+|||||++.
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 64 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV--NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEK 64 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC--CcCCccccceeEEEeeccCCCceEEEEEECCCcHh
Confidence 478999999999999999999987764 23443334444444433 345777999999864
No 183
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.29 E-value=1.3e-06 Score=79.23 Aligned_cols=58 Identities=28% Similarity=0.446 Sum_probs=42.8
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
..++++++|++|+|||||+|+|.+..+.. ..+| ..+....+.+++..+.+|||||+..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~---~~~t-~g~~~~~~~~~~~~l~l~D~~G~~~ 70 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDT---ISPT-LGFQIKTLEYEGYKLNIWDVGGQKT 70 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC---cCCc-cccceEEEEECCEEEEEEECCCCHH
Confidence 45789999999999999999999875432 2222 2233345566788888999999874
No 184
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.29 E-value=1.5e-06 Score=78.82 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=43.2
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
+.++|+++|++|||||||+++|....+. ...|+++.+.. .+..++..+.+|||||+..
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~--~~~~t~g~~~~--~~~~~~~~~~l~Dt~G~~~ 65 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV--TTIPTVGFNVE--TVTYKNVKFNVWDVGGQDK 65 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc--cccCCcccceE--EEEECCEEEEEEECCCCHH
Confidence 4589999999999999999999876653 23333344432 4445777888999999864
No 185
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.29 E-value=1.1e-06 Score=78.13 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=38.8
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
+|+++|++|||||||+++|++..... ..+.+|. ......+..++..+.+|||||..+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~-~~~~~t~-g~~~~~~~~~~~~~~l~Dt~G~~~ 57 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQS-QIIVPTV-GFNVESFEKGNLSFTAFDMSGQGK 57 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCc-ceecCcc-ccceEEEEECCEEEEEEECCCCHh
Confidence 47899999999999999999864321 1222221 122223445677888999999874
No 186
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.29 E-value=1.6e-06 Score=94.04 Aligned_cols=56 Identities=36% Similarity=0.531 Sum_probs=50.0
Q ss_pred cCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCCC
Q psy1007 372 GEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428 (445)
Q Consensus 372 G~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~ 428 (445)
|+||||||||+|++++.+. .+++.+++|.+.....+.+++..+.+|||||+.+...
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~ 56 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTT 56 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCc
Confidence 8999999999999999875 5689999999999888888998999999999986643
No 187
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.28 E-value=1.8e-06 Score=79.86 Aligned_cols=59 Identities=25% Similarity=0.326 Sum_probs=42.2
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
.+++++|++|||||||+++|.+..+.. .+.+|..+.....+.+++. .+.+|||||+.++
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~ 61 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQ--VYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEF 61 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--ccCCcceeeeEEEEEECCEEEEEEEEECCCChhc
Confidence 378999999999999999999887743 2333433333344556664 4559999998753
No 188
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.28 E-value=1.7e-06 Score=80.38 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=45.7
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~~ 426 (445)
++++++|++|||||||+++|....+.. ...+..+.++....+.+++.. +.+|||||+..+
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~ 68 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGSTES-PYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRF 68 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHH
Confidence 799999999999999999999876632 222344566666677778754 449999999743
No 189
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.27 E-value=1.4e-06 Score=79.33 Aligned_cols=59 Identities=27% Similarity=0.313 Sum_probs=43.4
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~~ 426 (445)
.+|+++|++|||||||++++++..+. ....+++.+.....+.+++.. +.+|||||+.++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 62 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV--ESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEY 62 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--cccCcchhhhEEEEEEECCEEEEEEEEECCChHhh
Confidence 58999999999999999999987653 334445544445556666544 569999998643
No 190
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.27 E-value=1.6e-06 Score=77.86 Aligned_cols=59 Identities=27% Similarity=0.356 Sum_probs=44.6
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~ 425 (445)
.+++++|++|+|||||++++.+..+.. ...+..+.++....+.+++.. +.+|||||+.+
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 68 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER 68 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH
Confidence 689999999999999999999766532 233444556666677777754 45899999864
No 191
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.26 E-value=1.8e-06 Score=82.04 Aligned_cols=62 Identities=21% Similarity=0.195 Sum_probs=43.6
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC--eeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG--YPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g--~~v~l~DTpG~~~~ 426 (445)
..++++++|++|||||||+++++.+.+.. ...+....++....+..++ ..+.+|||||+..+
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~-~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 75 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCC-ccCCccceeEEEEEEEECCeEEEEEEEECCCchhh
Confidence 45899999999999999999998877632 2233333444444454544 35569999998754
No 192
>PLN03108 Rab family protein; Provisional
Probab=98.25 E-value=2e-06 Score=81.16 Aligned_cols=59 Identities=25% Similarity=0.366 Sum_probs=44.9
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~ 425 (445)
++++++|++|+|||||+|+|++..+.. ...+..+.++....+.+++.. +.+|||||...
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~-~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~ 67 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 789999999999999999999887643 233444556656667777755 44999999763
No 193
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.25 E-value=1.7e-06 Score=75.91 Aligned_cols=55 Identities=25% Similarity=0.374 Sum_probs=40.8
Q ss_pred EEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 368 SVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 368 v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
++++|++|+|||||+|++.+..+.. ...+.++.+.. .+..++..+.+|||||+..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~ 56 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE-DTIPTVGFNMR--KVTKGNVTLKVWDLGGQPR 56 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc-CccCCCCcceE--EEEECCEEEEEEECCCCHh
Confidence 7899999999999999999987642 33343333333 3455677778999999864
No 194
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.24 E-value=2e-06 Score=77.23 Aligned_cols=56 Identities=21% Similarity=0.361 Sum_probs=41.2
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
++|+++|.+|||||||++++..+.+. +..|.+..+. ..+..+...+.+|||||+.+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~--~~~pt~g~~~--~~~~~~~~~~~l~D~~G~~~ 56 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNV--ETVEYKNISFTVWDVGGQDK 56 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--ccCCCCCcce--EEEEECCEEEEEEECCCCHh
Confidence 47999999999999999999876653 2333333333 34556777888999999864
No 195
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.24 E-value=1.8e-06 Score=76.75 Aligned_cols=55 Identities=18% Similarity=0.305 Sum_probs=40.7
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
+++++|.+|+|||||++++++..... ..+ |.......+.+++..+.+|||||...
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~ 55 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVT--TIP--TIGFNVETVEYKNVSFTVWDVGGQDK 55 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCC--CCC--CcCcceEEEEECCEEEEEEECCCChh
Confidence 58999999999999999999887422 122 22233344566778888999999874
No 196
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.24 E-value=5.4e-07 Score=84.88 Aligned_cols=60 Identities=27% Similarity=0.277 Sum_probs=46.6
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeee------------------------------cCCCccceEEEEEEEECCeeEE
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVT------------------------------SIPGTTRDVIEKHLDIGGYPVI 416 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs------------------------------~~~~tt~~~~~~~~~~~g~~v~ 416 (445)
+++++|.+|+|||||+++|+...-...+ ...++|++.....+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 4899999999999999999764322111 1256788888888888899999
Q ss_pred EEECCCCCcC
Q psy1007 417 LLDTAGLRTT 426 (445)
Q Consensus 417 l~DTpG~~~~ 426 (445)
+|||||+.++
T Consensus 81 liDTpG~~~~ 90 (208)
T cd04166 81 IADTPGHEQY 90 (208)
T ss_pred EEECCcHHHH
Confidence 9999998643
No 197
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.23 E-value=2.4e-06 Score=78.60 Aligned_cols=58 Identities=22% Similarity=0.372 Sum_probs=44.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
+.++++++|++|+|||||+|++.+..+.. .. .|.......+.+++.++.+|||||...
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~--~~--~T~~~~~~~i~~~~~~~~l~D~~G~~~ 75 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQ--HV--PTLHPTSEELTIGNIKFKTFDLGGHEQ 75 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcc--cC--CccCcceEEEEECCEEEEEEECCCCHH
Confidence 45789999999999999999999876532 11 233334456777888889999999763
No 198
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.23 E-value=1.4e-06 Score=75.73 Aligned_cols=58 Identities=41% Similarity=0.702 Sum_probs=46.9
Q ss_pred EEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEEC-CeeEEEEECCCCCcCC
Q psy1007 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG-GYPVILLDTAGLRTTT 427 (445)
Q Consensus 370 lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~-g~~v~l~DTpG~~~~~ 427 (445)
++|++|+|||||+|++++......+..+++|.+........+ +..+.+|||||+.+..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~ 59 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAG 59 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccc
Confidence 579999999999999998876655677777877777776655 6678899999998554
No 199
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.22 E-value=2.8e-06 Score=75.90 Aligned_cols=58 Identities=21% Similarity=0.452 Sum_probs=39.9
Q ss_pred cEEEEEcCCCCChhHHhhhhccc--cceeeecCCCc-cceEEEEEEEEC-C--eeEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQK--QISIVTSIPGT-TRDVIEKHLDIG-G--YPVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~--~~~~vs~~~~t-t~~~~~~~~~~~-g--~~v~l~DTpG~~~ 425 (445)
++++++|++|||||||++++... .+. ..+.+| ..++....+.++ + ..+.+|||||+..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 64 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFP--KNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL 64 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcC--ccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH
Confidence 47999999999999999999864 332 233333 345544445443 2 4666999999763
No 200
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.22 E-value=2.6e-06 Score=81.07 Aligned_cols=58 Identities=22% Similarity=0.401 Sum_probs=41.6
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCcc-ceEEEEEEEECC--eeEEEEECCCCC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT-RDVIEKHLDIGG--YPVILLDTAGLR 424 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt-~~~~~~~~~~~g--~~v~l~DTpG~~ 424 (445)
++|+++|++|||||||+++|+.+.+.. ..+.++. .+.....+.+++ ..+.+|||||+.
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 61 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDD-HAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE 61 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCc-cCcCCCccccceEEEEEECCEEEEEEEEeCCCcc
Confidence 479999999999999999998776531 2222222 255555666655 455699999987
No 201
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.21 E-value=2.8e-06 Score=78.27 Aligned_cols=58 Identities=17% Similarity=0.316 Sum_probs=42.9
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
+.++|+++|++|||||||++++..+.+. ...|++..+ ...+..++..+.+|||||+..
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~--~~~~T~~~~--~~~~~~~~~~~~l~D~~G~~~ 73 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVV--TTIPTIGFN--VETVEYKNLKFTMWDVGGQDK 73 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCCccccc--eEEEEECCEEEEEEECCCCHh
Confidence 4589999999999999999999876653 222322222 334566778888999999863
No 202
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.21 E-value=1.6e-06 Score=80.56 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=43.4
Q ss_pred EEEEEcCCCCChhHHhhhhcc--ccceee-------------ecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQ--KQISIV-------------TSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~--~~~~~v-------------s~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
+++++|.+|+|||||+|+|+. ..+... ....++|.+.....+..++..+.+|||||+.++
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 78 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADF 78 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHH
Confidence 789999999999999999996 222110 011345555555566777888889999999753
No 203
>PRK09559 putative global regulator; Reviewed
Probab=98.21 E-value=1e-05 Score=81.71 Aligned_cols=125 Identities=13% Similarity=0.079 Sum_probs=88.6
Q ss_pred eEEEEEEecccHHHHHHHhcCCCCCCCCCCceeEEeeeecCCCCceecceEEEeecc-----------------------
Q psy1007 41 GVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR----------------------- 97 (445)
Q Consensus 41 ai~viRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~iD~~i~~~~~~----------------------- 97 (445)
-.++|+|+|+|+.++|+.+++ +|.+.+++.++.|+.++|+. |.++|+.+++....
T Consensus 26 ~~g~i~v~G~Da~~FLqg~~T-~Dv~~L~~g~~~y~~~~n~k-Gril~d~~v~~~~~~~~l~~~~~~~~~~~~~L~ky~~ 103 (327)
T PRK09559 26 DWALATITGADSEKYLQGQVT-ADVSQLTEDQHLLAAHCDAK-GKMWSNLRLFRRGDGFAWIERRSVRENQLTELKKYAV 103 (327)
T ss_pred cceEEEEECCcHHHHhccccc-ccccccCCCCeeEEEEECCC-CcEEEEEEEEEeCCeEEEEeChhhhHHHHHHHhhccc
Confidence 379999999999999999998 66778889999999999997 78999999987654
Q ss_pred ------cccCcceEeeccCCChHHHhhhhccCCCCCCCCCeEEEeeeeecCCCCeeecCceeeecCCCCCcCCCceeEEE
Q psy1007 98 ------HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQ 171 (445)
Q Consensus 98 ------~~~~giavIrisGp~a~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~~f~~p~syTGEd~~Ei~ 171 (445)
......+++.++||++..++..++.... ..+...+.. +.+.++++.. .++++||.
T Consensus 104 ~~kV~i~~~~~~~~i~l~Gp~a~~~l~~~~~~~~---~~~~~~~~~-----------~~~~~~~~~~-----~~~g~ei~ 164 (327)
T PRK09559 104 FSKVTIAPDDERVLLGVAGFQARAALANLFSELP---DAEKPVVQE-----------GATTLLWFEH-----PAERFLLV 164 (327)
T ss_pred ceEEEEEeCCcEEEEEEECccHHHHHHHhcccCC---CcCcceEec-----------CCeEEEEecC-----CCCeEEEE
Confidence 1123467889999999888888764211 011111110 0011222222 36799999
Q ss_pred ecCcHHHHHHHHHHHhc
Q psy1007 172 VHGSIAVINAILGALTK 188 (445)
Q Consensus 172 ~hg~~~v~~~i~~~l~~ 188 (445)
++...+ ..+|+.|..
T Consensus 165 ~~~~~~--~~l~~~L~~ 179 (327)
T PRK09559 165 TDEATA--NMLTEKLRG 179 (327)
T ss_pred echHHH--HHHHHHhhh
Confidence 998776 567887764
No 204
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.20 E-value=2.7e-06 Score=77.45 Aligned_cols=57 Identities=18% Similarity=0.270 Sum_probs=42.4
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
.++++++|++|+|||||+++++.+.+.. ..+... .....+.+++..+.+|||||+.+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~--~~~t~~--~~~~~~~~~~~~~~l~D~~G~~~ 71 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH--TSPTIG--SNVEEIVYKNIRFLMWDIGGQES 71 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC--cCCccc--cceEEEEECCeEEEEEECCCCHH
Confidence 4789999999999999999999877642 222222 22334566778888999999864
No 205
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.20 E-value=2.1e-06 Score=75.84 Aligned_cols=57 Identities=28% Similarity=0.376 Sum_probs=44.3
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRT 425 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~ 425 (445)
+++++|++|+|||||++++++..+. ....+++.+........++. .+.+|||||...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 59 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFV--EEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE 59 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--cCcCCChhHeEEEEEEECCEEEEEEEEECCChHH
Confidence 5899999999999999999987742 45566666766666777653 556999999763
No 206
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.20 E-value=2.4e-06 Score=77.01 Aligned_cols=57 Identities=26% Similarity=0.468 Sum_probs=39.3
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEEC--CeeEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG--GYPVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~--g~~v~l~DTpG~~~ 425 (445)
.+++++|++|||||||+|+|.++.+.. ..+.+..+ ......++ +..+.+|||||..+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~ 59 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPE--NVPRVLPE-ITIPADVTPERVPTTIVDTSSRPQ 59 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc--cCCCcccc-eEeeeeecCCeEEEEEEeCCCchh
Confidence 378999999999999999999887742 33333222 22223333 34566999999863
No 207
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.20 E-value=2.2e-06 Score=79.89 Aligned_cols=58 Identities=24% Similarity=0.426 Sum_probs=44.3
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
+|+++|++|||||||+++|++..+. ..+..|+.+.....+.+++. .+.+|||||...+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~ 60 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSF 60 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCchhh
Confidence 5899999999999999999988764 34455555566666777774 5569999998643
No 208
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.19 E-value=2.3e-06 Score=76.35 Aligned_cols=55 Identities=18% Similarity=0.299 Sum_probs=39.8
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
+++++|++|+|||||++++....+.. ..+....+ ...+...+..+.+|||||+.+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~--~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~~ 55 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT--TIPTIGFN--VETVTYKNLKFQVWDLGGQTS 55 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC--cCCccCcC--eEEEEECCEEEEEEECCCCHH
Confidence 58999999999999999998766532 22222222 234556777888999999864
No 209
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.18 E-value=3.5e-06 Score=76.92 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=42.5
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
+.++++++|++|||||||++++..+.+. ...|+++.+.. .+..++..+.+|||||+..
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~--~~~~t~~~~~~--~~~~~~~~l~l~D~~G~~~ 69 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV--TTIPTIGFNVE--TVTYKNISFTVWDVGGQDK 69 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC--CcCCccccceE--EEEECCEEEEEEECCCChh
Confidence 3489999999999999999999766652 23333333332 4556777888999999864
No 210
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.18 E-value=4.2e-06 Score=75.32 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=42.0
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~ 425 (445)
++++++|++|||||||+++++...+.. .++++. ......+.++|.. +.+|||+|+..
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~--~~~~~~-~~~~~~i~~~~~~~~l~i~D~~g~~~ 59 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQ--LESPEG-GRFKKEVLVDGQSHLLLIRDEGGAPD 59 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCC--CCCCCc-cceEEEEEECCEEEEEEEEECCCCCc
Confidence 478999999999999999998877642 233333 3334567788855 55999999963
No 211
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.17 E-value=3.2e-06 Score=75.33 Aligned_cols=59 Identities=37% Similarity=0.524 Sum_probs=45.3
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEE--EEECCCCCcC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~~ 426 (445)
|++++|+++||||||+++|.+..+.. ...+....+.....+..++.++. +|||+|..++
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 61 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPE-NYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERF 61 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTS-SSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGG
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccc-ccccccccccccccccccccccccccccccccccc
Confidence 68999999999999999999887643 22233336777788888877644 9999998643
No 212
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.17 E-value=4.1e-06 Score=75.56 Aligned_cols=58 Identities=26% Similarity=0.427 Sum_probs=43.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
+.++++++|++|+|||||++++.+..+.... .|.......+..++..+.+|||||...
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~----~t~g~~~~~i~~~~~~~~~~D~~G~~~ 70 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHIT----PTQGFNIKTVQSDGFKLNVWDIGGQRA 70 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccC----CCCCcceEEEEECCEEEEEEECCCCHH
Confidence 3589999999999999999999987653211 122233345566788888999999863
No 213
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.17 E-value=3.9e-06 Score=80.18 Aligned_cols=63 Identities=24% Similarity=0.302 Sum_probs=49.8
Q ss_pred cEEEEEcCCCCChhHHhhhhccc--cceeeecCCCccceEEEEEEEE---CCeeEEEEECCCCCcCCC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQK--QISIVTSIPGTTRDVIEKHLDI---GGYPVILLDTAGLRTTTS 428 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~--~~~~vs~~~~tt~~~~~~~~~~---~g~~v~l~DTpG~~~~~~ 428 (445)
..|+++|++++|||+|+|.|++. .+...+....||+......... .+..+.++||||+.+...
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~ 75 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRER 75 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCcccc
Confidence 36789999999999999999998 7665555567888777666555 357888999999985543
No 214
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.15 E-value=3.9e-06 Score=78.93 Aligned_cols=60 Identities=28% Similarity=0.374 Sum_probs=41.4
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEEC-----Ce--eEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG-----GY--PVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~-----g~--~v~l~DTpG~~~~ 426 (445)
++++++|++|||||||++++++..+.. ...+....++....+.++ +. .+.+|||+|+.++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~-~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~ 67 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLG-RPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV 67 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC-CCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH
Confidence 479999999999999999999887643 222333334444444442 23 4559999998743
No 215
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.14 E-value=6.6e-06 Score=72.82 Aligned_cols=55 Identities=29% Similarity=0.461 Sum_probs=38.8
Q ss_pred EEEEcCCCCChhHHhhhhcccc-ceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 368 SVIVGEPNVGKSSLMNFLCQKQ-ISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 368 v~lvG~~~vGKSsLln~l~~~~-~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
++++|++|+|||||+|.+++.. ....+..+++|.+... ...++ .+.+|||||+..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~~~-~~~~~D~~g~~~ 57 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNVND-KFRLVDLPGYGY 57 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEccC-eEEEecCCCccc
Confidence 7899999999999999999533 3333444555555443 33333 677999999863
No 216
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.13 E-value=2.8e-06 Score=77.28 Aligned_cols=59 Identities=22% Similarity=0.162 Sum_probs=44.1
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeee---------------cCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVT---------------SIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs---------------~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
+|+++|.+|+|||||+|+|++....... ...++|.+.....+...+..+.+|||||+.+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHH
Confidence 4789999999999999999987654211 1234555665666667778888999999864
No 217
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.12 E-value=4.6e-06 Score=75.32 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=40.2
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
.++++|++|||||||+++|++..+.. ...|....+ ...+...+..+.+|||||...+
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~-~~~pt~g~~--~~~i~~~~~~l~i~Dt~G~~~~ 57 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLE-SVVPTTGFN--SVAIPTQDAIMELLEIGGSQNL 57 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcc-cccccCCcc--eEEEeeCCeEEEEEECCCCcch
Confidence 37899999999999999999876532 222222222 2345556677889999998743
No 218
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.12 E-value=5.6e-06 Score=76.21 Aligned_cols=58 Identities=21% Similarity=0.345 Sum_probs=43.0
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
+.++++++|++|||||||++++....+. ...|++..+. ..+..++..+.+|||||+..
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~--~~~pt~g~~~--~~~~~~~~~~~i~D~~Gq~~ 73 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNV--ETVEYKNISFTVWDVGGQDK 73 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc--cccCCcceeE--EEEEECCEEEEEEECCCCHH
Confidence 3479999999999999999999876653 2233333333 34566778888999999864
No 219
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.10 E-value=3.5e-06 Score=79.18 Aligned_cols=60 Identities=27% Similarity=0.298 Sum_probs=42.8
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEEC--CeeEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG--GYPVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~--g~~v~l~DTpG~~~~ 426 (445)
++++++|++|||||||+++|.++.+.. ...+..+..+........ ...+.+|||+|+.+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~ 67 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPE-GYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEY 67 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcc-cCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHH
Confidence 799999999999999999999988754 233333434444444333 234569999999854
No 220
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.10 E-value=4.9e-06 Score=75.27 Aligned_cols=55 Identities=24% Similarity=0.328 Sum_probs=39.5
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
+++++|++|||||||+|++++... ..+. .|.......+..++..+.+|||||...
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~---~~~~-~t~g~~~~~~~~~~~~~~i~D~~G~~~ 55 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIP---KKVA-PTVGFTPTKLRLDKYEVCIFDLGGGAN 55 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCC---cccc-CcccceEEEEEECCEEEEEEECCCcHH
Confidence 478999999999999999997622 1212 222233445667888888999999753
No 221
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.09 E-value=6.4e-06 Score=78.50 Aligned_cols=57 Identities=26% Similarity=0.412 Sum_probs=41.1
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
++++++|.+|||||||+++|+.+.+.. ..+.+..++.. ..+....+.+|||||+..+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~--~~~Tig~~~~~--~~~~~~~l~iwDt~G~e~~ 57 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD--TVSTVGGAFYL--KQWGPYNISIWDTAGREQF 57 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC--CCCccceEEEE--EEeeEEEEEEEeCCCcccc
Confidence 478999999999999999999988742 23333333332 2334566779999998754
No 222
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.07 E-value=6e-06 Score=73.42 Aligned_cols=55 Identities=20% Similarity=0.355 Sum_probs=38.6
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEEC-CeeEEEEECCCCCc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG-GYPVILLDTAGLRT 425 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~-g~~v~l~DTpG~~~ 425 (445)
+++++|++|||||||+|+|.+..+.. ..+....+ ...+..+ ...+.+|||||+..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~--~~~t~~~~--~~~~~~~~~~~l~i~D~~G~~~ 56 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT--TIPTVGFN--VEMLQLEKHLSLTVWDVGGQEK 56 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc--ccCccCcc--eEEEEeCCceEEEEEECCCCHh
Confidence 47899999999999999999887643 23322222 2334333 45677999999864
No 223
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.05 E-value=4.5e-06 Score=87.26 Aligned_cols=63 Identities=24% Similarity=0.343 Sum_probs=50.2
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceee------------------------------ecCCCccceEEEEEEEECCe
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIV------------------------------TSIPGTTRDVIEKHLDIGGY 413 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~v------------------------------s~~~~tt~~~~~~~~~~~g~ 413 (445)
+.++++++|.+++|||||+++|+....... ....|+|++.....+..++.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 447899999999999999999984321110 12468999999988988899
Q ss_pred eEEEEECCCCCcC
Q psy1007 414 PVILLDTAGLRTT 426 (445)
Q Consensus 414 ~v~l~DTpG~~~~ 426 (445)
.+.+|||||.+++
T Consensus 85 ~i~liDtpG~~~~ 97 (425)
T PRK12317 85 YFTIVDCPGHRDF 97 (425)
T ss_pred EEEEEECCCcccc
Confidence 9999999998754
No 224
>KOG0091|consensus
Probab=98.05 E-value=1e-06 Score=78.36 Aligned_cols=62 Identities=26% Similarity=0.525 Sum_probs=49.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEE-CCeeEE--EEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDI-GGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~-~g~~v~--l~DTpG~~~~ 426 (445)
..+++.++|++-||||||+..++.++++..+ -|.+..|+....+++ .|..|+ +|||+|++.+
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaels-dptvgvdffarlie~~pg~riklqlwdtagqerf 71 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELS-DPTVGVDFFARLIELRPGYRIKLQLWDTAGQERF 71 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccC-CCccchHHHHHHHhcCCCcEEEEEEeeccchHHH
Confidence 3478999999999999999999999998765 456677776665655 455444 9999999865
No 225
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.04 E-value=4.2e-06 Score=75.92 Aligned_cols=60 Identities=25% Similarity=0.254 Sum_probs=37.3
Q ss_pred EEEEEcCCCCChhHHhhhhcccccee--------ee------cCCCccceEEEEEEEE-----CCeeEEEEECCCCCcC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISI--------VT------SIPGTTRDVIEKHLDI-----GGYPVILLDTAGLRTT 426 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~--------vs------~~~~tt~~~~~~~~~~-----~g~~v~l~DTpG~~~~ 426 (445)
+++++|++|+|||||+++|++..... +. ...++|.+.....+.+ .+..+.+|||||+.++
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 58999999999999999998742110 00 0112333333323322 2445669999999753
No 226
>PLN00023 GTP-binding protein; Provisional
Probab=98.04 E-value=1e-05 Score=80.96 Aligned_cols=62 Identities=26% Similarity=0.377 Sum_probs=44.0
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC---------------eeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG---------------YPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g---------------~~v~l~DTpG~~~~ 426 (445)
..++|+++|++|||||||+++|++..+.. ...+....++....+.+++ ..+.||||+|++.+
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~-~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIA-RPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCccc-ccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 45799999999999999999999887642 2333333455445555532 34569999998754
No 227
>KOG0097|consensus
Probab=98.03 E-value=3.9e-06 Score=72.82 Aligned_cols=59 Identities=25% Similarity=0.444 Sum_probs=49.7
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCC-ccceEEEEEEEECCeeEE--EEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG-TTRDVIEKHLDIGGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~-tt~~~~~~~~~~~g~~v~--l~DTpG~~~~ 426 (445)
|+..++|+-|||||+|++.++.+++. .+.|. ...++....+++.|++++ +|||+|++.+
T Consensus 12 fkyiiigdmgvgkscllhqftekkfm--adcphtigvefgtriievsgqkiklqiwdtagqerf 73 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF 73 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHh--hcCCcccceecceeEEEecCcEEEEEEeecccHHHH
Confidence 78899999999999999999999885 46665 356777888888888766 9999999854
No 228
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.03 E-value=5.1e-06 Score=70.30 Aligned_cols=60 Identities=22% Similarity=0.325 Sum_probs=36.7
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeee-cCCCccceEEEEEEEECC--eeEEEEECCCCCcC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVT-SIPGTTRDVIEKHLDIGG--YPVILLDTAGLRTT 426 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs-~~~~tt~~~~~~~~~~~g--~~v~l~DTpG~~~~ 426 (445)
+|+++|++|+|||||+++|++......+ ..+..+.........+.+ ..+.+||++|....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~ 63 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEF 63 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCcccee
Confidence 6899999999999999999988764101 111122222222333333 34669999999744
No 229
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.03 E-value=1.1e-05 Score=74.32 Aligned_cols=59 Identities=29% Similarity=0.356 Sum_probs=42.4
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~~ 426 (445)
.+++++|++|+|||||++++....+.. ...++..+.....+.+++.. +.+|||||+...
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~ 62 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE--EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY 62 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEECCEEEEEEEEECCCChhc
Confidence 478999999999999999998766532 23334444444556667655 449999998643
No 230
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=6e-06 Score=83.12 Aligned_cols=60 Identities=35% Similarity=0.416 Sum_probs=49.9
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC------------------eeEEEEECCCCCc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG------------------YPVILLDTAGLRT 425 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g------------------~~v~l~DTpG~~~ 425 (445)
++++.++|.||||||||+|+++... ....++|+||.+.....+.+.. .++.++|.||+-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~ 79 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVK 79 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCC
Confidence 4789999999999999999999988 5668999999999887776421 2455999999984
No 231
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.03 E-value=5.3e-06 Score=77.46 Aligned_cols=60 Identities=25% Similarity=0.195 Sum_probs=37.7
Q ss_pred cEEEEEcCCCCChhHHhhhhcccccee-ee---cCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISI-VT---SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~-vs---~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
++++++|++|+|||||+|+|++..... .+ ....+|.+....... +...+.+|||||+.+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~ 65 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGST 65 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcc
Confidence 579999999999999999999854321 11 111123332211111 1235679999999854
No 232
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.01 E-value=1.2e-05 Score=75.82 Aligned_cols=61 Identities=21% Similarity=0.237 Sum_probs=40.5
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC--eeEEEEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG--YPVILLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g--~~v~l~DTpG~~~~ 426 (445)
.++++++|++|||||||+++++.+.+.. ...+....+.....+..++ ..+.+|||+|...+
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~ 71 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGEFEK-KYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF 71 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceEEEEEEEEECCeEEEEEEEECCCchhh
Confidence 4799999999999999998877665432 2223333344444444444 35559999998643
No 233
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.01 E-value=4.4e-06 Score=72.98 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=32.7
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~ 424 (445)
+++++|++|||||||+|+|++..+. . .+| . .+.+.+ .+|||||+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~---~-~~t-~-----~~~~~~---~~iDt~G~~ 46 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL---Y-KKT-Q-----AVEYND---GAIDTPGEY 46 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc---c-ccc-e-----eEEEcC---eeecCchhh
Confidence 7899999999999999999987642 1 111 1 123333 689999984
No 234
>KOG0393|consensus
Probab=98.01 E-value=4.8e-06 Score=77.32 Aligned_cols=61 Identities=31% Similarity=0.402 Sum_probs=52.0
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEEC-CeeEE--EEECCCCCcCC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG-GYPVI--LLDTAGLRTTT 427 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~-g~~v~--l~DTpG~~~~~ 427 (445)
.+++++||+.++|||+|+..+....+. ..+.+|-.|.+...+.++ |.++. +|||+|+++.+
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp--~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYD 67 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFP--EEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYD 67 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCc--ccccCeEEccceEEEEecCCCEEEEeeeecCCCcccc
Confidence 368999999999999999999998875 456667778888899995 98876 99999998654
No 235
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.99 E-value=1e-05 Score=87.58 Aligned_cols=63 Identities=22% Similarity=0.297 Sum_probs=51.0
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe-eEEEEECCCCCcCC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY-PVILLDTAGLRTTT 427 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~-~v~l~DTpG~~~~~ 427 (445)
+..+|+++|.+++|||||+++|.+..+.. .+.+++|.+.....+.+++. .+.+|||||...+.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~-~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~ 149 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQ-GEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT 149 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccc-ccCCceeecceEEEEEECCCcEEEEEECCCCcchh
Confidence 45689999999999999999999887654 55667888877777777544 88899999987653
No 236
>KOG1486|consensus
Probab=97.91 E-value=2.5e-05 Score=74.38 Aligned_cols=60 Identities=27% Similarity=0.370 Sum_probs=53.1
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
-+|+++|.|.||||||+..++..+-. ...+.+||..+....+.++|..+.+.|.||+.+.
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~Se-aA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieG 122 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSE-AASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEG 122 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhh-hhceeeeEEEeecceEEecCceEEEecCcccccc
Confidence 59999999999999999999987643 3567789999999999999999999999999743
No 237
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.91 E-value=3.9e-05 Score=75.80 Aligned_cols=60 Identities=25% Similarity=0.388 Sum_probs=37.7
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeee-cC--------CCccceEEEEEEEECCeeEE--EEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVT-SI--------PGTTRDVIEKHLDIGGYPVI--LLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs-~~--------~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~ 425 (445)
|+++++|.+|+||||++|.|++....... .. ..+........+.-++.++. ++||||+.+
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd 75 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGD 75 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccc
Confidence 78999999999999999999987554321 01 11122333334444666544 999999983
No 238
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.89 E-value=2.1e-05 Score=87.56 Aligned_cols=64 Identities=22% Similarity=0.327 Sum_probs=52.9
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCC
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT 427 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~ 427 (445)
.+...|+++|.+++|||||+++|.+..+.. +...+.|.+.....+.+++..+.+|||||...+.
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~-~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~ 351 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAA-GEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT 351 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccc-cccCceeeeccEEEEEECCEEEEEEECCCCccch
Confidence 456789999999999999999998877643 4556778777777788888899999999998653
No 239
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.86 E-value=1.9e-05 Score=76.04 Aligned_cols=60 Identities=22% Similarity=0.142 Sum_probs=42.8
Q ss_pred EEEEEcCCCCChhHHhhhhccccce-----eee------c------CCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQIS-----IVT------S------IPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~-----~vs------~------~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
+++++|.+|+|||||+++|+...-. .+. + .-+.|.+.....+.+++..+.+|||||+.++
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch
Confidence 4789999999999999999864211 111 1 1123445556677788999999999999754
No 240
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.83 E-value=2.4e-05 Score=79.67 Aligned_cols=61 Identities=28% Similarity=0.238 Sum_probs=51.9
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe-----------------eEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY-----------------PVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~-----------------~v~l~DTpG~~~~ 426 (445)
+++.++|.||+|||||+|+|++.....+.++|+||.+.....+.+.+. .+.++|.||+...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g 80 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG 80 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence 689999999999999999999987635678899999999888887652 4679999999843
No 241
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.83 E-value=3.7e-05 Score=71.78 Aligned_cols=60 Identities=32% Similarity=0.396 Sum_probs=36.6
Q ss_pred CcEEEEEcCCCCChhHHhh-hhcccccee---eecCCCccc--eEEEEE--------EEECCeeEE--EEECCCCC
Q psy1007 365 GIKSVIVGEPNVGKSSLMN-FLCQKQISI---VTSIPGTTR--DVIEKH--------LDIGGYPVI--LLDTAGLR 424 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln-~l~~~~~~~---vs~~~~tt~--~~~~~~--------~~~~g~~v~--l~DTpG~~ 424 (445)
.++|+++|++|||||||++ ++.+..+.. ...+.+|.. +..... ..++|..+. +|||||++
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~ 77 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDH 77 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCCh
Confidence 3689999999999999996 565543211 122333331 222111 135665444 99999986
No 242
>KOG1491|consensus
Probab=97.83 E-value=2.1e-05 Score=77.84 Aligned_cols=73 Identities=32% Similarity=0.358 Sum_probs=57.2
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC-----------------eeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG-----------------YPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g-----------------~~v~l~DTpG~~~~ 426 (445)
+.+++.++|.|||||||++|.|+..... ..++|++|.|.....+.+.+ -.+.+.|+||+-.-
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 5679999999999999999999998876 68999999999988876432 24559999999843
Q ss_pred CCCcccHHHHHHHH
Q psy1007 427 TSDIIETEGNLLEK 440 (445)
Q Consensus 427 ~~~~~e~~~i~~~~ 440 (445)
.. .-.|+.++|
T Consensus 98 As---~G~GLGN~F 108 (391)
T KOG1491|consen 98 AS---AGEGLGNKF 108 (391)
T ss_pred cc---cCcCchHHH
Confidence 22 335555554
No 243
>KOG1490|consensus
Probab=97.82 E-value=1e-05 Score=83.47 Aligned_cols=73 Identities=25% Similarity=0.213 Sum_probs=58.4
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCCCCcccHHHHH
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNL 437 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~~~~e~~~i~ 437 (445)
+.-+++++|.|||||||++|.++..+. .|.++++||.....+.+.+.=..+.++||||+-+........++++
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradv-evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmq 239 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADD-EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQ 239 (620)
T ss_pred CcCeEEEecCCCCCcHhhccccccccc-ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHH
Confidence 345789999999999999999998776 5689999999998888877666777999999986655544444443
No 244
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.81 E-value=2.6e-05 Score=76.62 Aligned_cols=60 Identities=17% Similarity=0.108 Sum_probs=45.5
Q ss_pred EEEEEcCCCCChhHHhhhhccc-----cceeee------------cCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQK-----QISIVT------------SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~-----~~~~vs------------~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
+++++|.+|+|||||+++|+.. ....++ ...++|.+.....+.+++..+.+|||||..++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDF 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHH
Confidence 4789999999999999999632 111111 23367788878888899999999999998643
No 245
>KOG0395|consensus
Probab=97.80 E-value=3.1e-05 Score=72.51 Aligned_cols=61 Identities=30% Similarity=0.380 Sum_probs=52.0
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEE--EEECCCCCcCC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI--LLDTAGLRTTT 427 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~~~ 427 (445)
..+++++|.+|||||+|+.++++..+. ..+.+|.-+.+...+.+++..+. |+||+|+.++.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~--~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~ 65 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFV--EDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFS 65 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccc--cccCCCccccceEEEEECCEEEEEEEEcCCCcccCh
Confidence 368999999999999999999999884 56778888999999999987665 99999976543
No 246
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.78 E-value=3.9e-05 Score=72.09 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=38.2
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEE--ECCeeEEEEECCCCCcC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLD--IGGYPVILLDTAGLRTT 426 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~--~~g~~v~l~DTpG~~~~ 426 (445)
+++++|++|+|||||+++|....+.. ..+.++.+....... ..+..+.+|||||....
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~--t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~ 61 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRS--TVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKL 61 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCC--ccCcEeecceEEEeecCCCCceEEEEECCCCHHH
Confidence 58999999999999999999876532 222222222221111 12566789999998743
No 247
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=97.75 E-value=3.8e-05 Score=72.08 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=38.5
Q ss_pred EcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 371 VGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 371 vG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
+|++|||||||+++++...+.. ...+....++....+.+++. .+.+|||||+..+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~-~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~ 57 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKF 57 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEECCEEEEEEEEECCCchhh
Confidence 5999999999999999876532 22233334555556666654 4559999998754
No 248
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=97.75 E-value=3.6e-05 Score=69.27 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=31.4
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~ 424 (445)
+|+++|.+|+|||||+|+|.+.... . ..|. .+.+++. .+|||||+.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~---~~~~-----~v~~~~~--~~iDtpG~~ 48 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--A---RKTQ-----AVEFNDK--GDIDTPGEY 48 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--C---ccce-----EEEECCC--CcccCCccc
Confidence 6999999999999999998865321 1 1121 1223322 279999986
No 249
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.73 E-value=4.7e-05 Score=77.93 Aligned_cols=62 Identities=27% Similarity=0.398 Sum_probs=48.1
Q ss_pred cEEEEEcCCCCChhHHhhhhccc----cce-----------eeecCCC---ccceEEE---EEEEE--C-C--eeEEEEE
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQK----QIS-----------IVTSIPG---TTRDVIE---KHLDI--G-G--YPVILLD 419 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~----~~~-----------~vs~~~~---tt~~~~~---~~~~~--~-g--~~v~l~D 419 (445)
+.++++|+.++|||||+|+|++. +.. .+++.+| ||++... ..+.+ . + .+|.++|
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlID 97 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVD 97 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEE
Confidence 67899999999999999999998 555 5677788 7888765 33333 2 1 4778999
Q ss_pred CCCCCcCC
Q psy1007 420 TAGLRTTT 427 (445)
Q Consensus 420 TpG~~~~~ 427 (445)
|+|+...+
T Consensus 98 cvG~~v~G 105 (492)
T TIGR02836 98 CVGYTVKG 105 (492)
T ss_pred CCCcccCC
Confidence 99997543
No 250
>KOG2844|consensus
Probab=97.73 E-value=0.00016 Score=77.13 Aligned_cols=181 Identities=17% Similarity=0.207 Sum_probs=112.7
Q ss_pred CceEEEEEEecccHHHHHHHhcCCCCCCCCCCceeEEeeeecCCCCceecceEEEeecc---------------------
Q psy1007 39 KCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR--------------------- 97 (445)
Q Consensus 39 ~~ai~viRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~iD~~i~~~~~~--------------------- 97 (445)
-|..+...|.|+||.++++.||+.+ -..+++...|..|+|+.+|-.-|=+|.=+.+.
T Consensus 523 mS~F~Kf~i~G~da~e~ld~LfSan--v~~~vg~tv~T~mln~~Gg~e~D~tvsrl~~~~f~mia~t~qq~~~~~wi~k~ 600 (856)
T KOG2844|consen 523 MSSFGKFDITGQDAVELLDYLFSAN--VDVPVGSTVYTGMLNPKGGYEADCTVSRLSPRGFFMIAGTIQQLHDLSWIKKE 600 (856)
T ss_pred ccccceeeeccHHHHHHHHHHhhcC--CCCCCCceeeeeeecCCCCeEeeeeeeeecCCceEEEccchhhhhhHHHHHHH
Confidence 3556667788999999999999754 45678999999999998665555454433333
Q ss_pred -----------cccCcceEeeccCCChHHHhhhhccCCCCCCCCCeEEEeeeeecCCCCeeecCceeeecCCCCCcCCCc
Q psy1007 98 -----------HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGED 166 (445)
Q Consensus 98 -----------~~~~giavIrisGp~a~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~~f~~p~syTGEd 166 (445)
+......+|-|+||.+..++++|+..+..+..||--. ...++. +.. ++. .-.-|||||-
T Consensus 601 ~~~~~~~v~l~DvT~~~~~l~i~GP~sR~vLqelt~~dls~~~fp~~~--~k~l~v--g~~---gir---airis~~GEL 670 (856)
T KOG2844|consen 601 MPKGGSNVELKDVTDELGALSIIGPQSRKVLQELTDADLSDDHFPFLT--TKELKV--GNA---GIR---AIRISHTGEL 670 (856)
T ss_pred hhccCCceeeeechhhhceeeecCchHHHHHHhccCCCCCccccCcce--eeeeec--ccc---ceE---EEEEEecccc
Confidence 3445677999999999999999987665433333111 111111 110 111 1134799999
Q ss_pred eeEEEecCcHHHHHHHHHHHhcCCCcccccCCcccchhhhccccchhhhhhHHHHHHcccHHHHHHHHHhccchHHHHHH
Q psy1007 167 CCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYS 246 (445)
Q Consensus 167 ~~Ei~~hg~~~v~~~i~~~l~~~~g~r~a~~Gef~~ra~~n~k~dl~~ae~~~~li~A~~~~~~~~al~~~~g~l~~~l~ 246 (445)
++|+|++-..++- +.++|.+. | .-.++++|-. .|+.++. |.+-|.
T Consensus 671 G~~Lyip~e~~~~--vY~~im~A-G-------------------------~~~~l~naGy-----ya~~aLr--iEK~y~ 715 (856)
T KOG2844|consen 671 GWELYIPNEDAVA--VYRAIMNA-G-------------------------QEEGLQNAGY-----YALRALR--IEKFYR 715 (856)
T ss_pred ceEEEechHHHHH--HHHHHHhh-h-------------------------hhhccccchh-----HHHHHHH--HHHHHH
Confidence 9999999987633 44444433 1 1112344332 2223322 556677
Q ss_pred HHHHHHHHHHhccccccccC
Q psy1007 247 EWRQLILESLASVEAYIDFS 266 (445)
Q Consensus 247 ~~~~~l~~~~a~iE~~Idfs 266 (445)
-|-+.|++.-.-+|+-+.|.
T Consensus 716 ~Wg~dl~~d~tPlEaGl~f~ 735 (856)
T KOG2844|consen 716 AWGQDLNPDTTPLEAGLEFR 735 (856)
T ss_pred hhccccCCCCChhhccceeE
Confidence 78888776666666544443
No 251
>KOG1547|consensus
Probab=97.72 E-value=8.1e-05 Score=70.50 Aligned_cols=61 Identities=30% Similarity=0.493 Sum_probs=42.4
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeee-------cCCCcc-ceEEEEEEEECCeeEE--EEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVT-------SIPGTT-RDVIEKHLDIGGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs-------~~~~tt-~~~~~~~~~~~g~~v~--l~DTpG~~~~ 426 (445)
|+++++|.+|.||||++|.+...+...-+ +++.|| .......+.-+|.++. ++|||||.+.
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDq 117 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQ 117 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccc
Confidence 69999999999999999999876543311 122222 3344555555676555 9999999854
No 252
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.72 E-value=3.8e-05 Score=83.33 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=46.9
Q ss_pred cEEEEEcCCCCChhHHhhhhccccce--eeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQIS--IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~--~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
+.|+++|.+++|||||+|+|++.... ......++|.+.....+..++..+.+|||||.+.
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~ 62 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEK 62 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHH
Confidence 36899999999999999999974321 1123457888888777888888888999999763
No 253
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.71 E-value=4.2e-05 Score=75.04 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=41.5
Q ss_pred EEEEEcCCCCChhHHhhhhcccc-----ceeee----------cCC------CccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQ-----ISIVT----------SIP------GTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~-----~~~vs----------~~~------~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
+++++|.+|+|||||+++|+... .+.+. ++. +.+.......+.+++..+.+|||||+.+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 68999999999999999997531 11111 111 1233344556778899999999999875
Q ss_pred C
Q psy1007 426 T 426 (445)
Q Consensus 426 ~ 426 (445)
+
T Consensus 84 f 84 (267)
T cd04169 84 F 84 (267)
T ss_pred H
Confidence 4
No 254
>KOG1489|consensus
Probab=97.71 E-value=2.7e-05 Score=76.57 Aligned_cols=62 Identities=26% Similarity=0.282 Sum_probs=52.8
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee-EEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP-VILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~-v~l~DTpG~~~~ 426 (445)
.--.+.++|.||+|||||+|+++..+- .|.++++||.......+..++.. +.+-|.||+.+.
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~G 257 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEG 257 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCcccccc
Confidence 334788999999999999999998775 57899999999998888887654 779999999854
No 255
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.69 E-value=7.7e-05 Score=76.04 Aligned_cols=61 Identities=26% Similarity=0.227 Sum_probs=36.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcccc-----ceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQ-----ISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~-----~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
..++|+++|++|+|||||+|+|.|-. .+. .....||.+...+... +-.++.+||.||....
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~-tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~ 99 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAP-TGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTP 99 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS---SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCC-CCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCC
Confidence 34799999999999999999998731 111 1112356655554432 3346789999998743
No 256
>KOG0410|consensus
Probab=97.65 E-value=0.00036 Score=68.93 Aligned_cols=71 Identities=23% Similarity=0.185 Sum_probs=50.7
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEE-CCeeEEEEECCCCCcCCCCcccHHHHHHHHH
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDI-GGYPVILLDTAGLRTTTSDIIETEGNLLEKN 441 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~-~g~~v~l~DTpG~~~~~~~~~e~~~i~~~~~ 441 (445)
.-.|+++|++|+|||||+++|++-... ..+..+.|.|+......+ +|..+.+.||-||. .+++ .++-.||.
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~-p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFi-sdLP----~~LvaAF~ 249 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALY-PNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFI-SDLP----IQLVAAFQ 249 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcC-ccchhheeccchhhhccCCCCcEEEEeechhhh-hhCc----HHHHHHHH
Confidence 347899999999999999999954432 245566777766655554 57778899999998 4454 44444554
No 257
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.64 E-value=5.6e-05 Score=70.67 Aligned_cols=60 Identities=13% Similarity=0.134 Sum_probs=45.0
Q ss_pred cEEEEEcCCCCChhHHhhhhcccc------ce---------eeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQ------IS---------IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~------~~---------~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
++++++|.+++|||||+++|+... .. ......++|.+.....+..++..+.++||||...
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 77 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD 77 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH
Confidence 689999999999999999998531 00 0012346777777767777788889999999863
No 258
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.64 E-value=5.6e-05 Score=83.51 Aligned_cols=63 Identities=21% Similarity=0.329 Sum_probs=46.8
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEE----CCeeEEEEECCCCCcC
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDI----GGYPVILLDTAGLRTT 426 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~----~g~~v~l~DTpG~~~~ 426 (445)
.+...|+++|.+++|||||+++|....+.. +...+.|.+.....+.+ .+..+.+|||||...+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F 308 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAF 308 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc-ccCCccccccceEEEEEEecCCceEEEEEECCcHHHH
Confidence 456789999999999999999999877643 45556665544444333 2477889999998744
No 259
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.62 E-value=4.8e-05 Score=75.61 Aligned_cols=59 Identities=25% Similarity=0.308 Sum_probs=50.9
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEEC-CeeEEEEECCCCCcC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG-GYPVILLDTAGLRTT 426 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~-g~~v~l~DTpG~~~~ 426 (445)
-|.++|.||+|||||++.++.-+- .+.++|+||.......+..+ +..+.+-|.||+.+-
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP-KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEG 220 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP-KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEG 220 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC-cccCCccccccCcccEEEecCCCcEEEecCcccccc
Confidence 578999999999999999998764 46899999999999988874 556889999999854
No 260
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.61 E-value=7.2e-05 Score=73.25 Aligned_cols=59 Identities=22% Similarity=0.256 Sum_probs=40.7
Q ss_pred EEEEEcCCCCChhHHhhhhccccce-----eee------cC------CCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQIS-----IVT------SI------PGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~-----~vs------~~------~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
+++++|.+|+|||||+|+|+..... .+. +. .+.+.......+.+++..+.+|||||..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~ 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYAD 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHH
Confidence 4799999999999999998753211 111 00 12334444556777888999999999864
No 261
>KOG0083|consensus
Probab=97.61 E-value=1.6e-05 Score=68.49 Aligned_cols=57 Identities=23% Similarity=0.258 Sum_probs=46.5
Q ss_pred EEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEE--EEECCCCCcC
Q psy1007 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 370 lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~~ 426 (445)
++|++++||++|+-++-.+.+-...-+..+..|+....+..++.++. +|||+|++.+
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerf 60 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERF 60 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHH
Confidence 68999999999999988776654334455678888889999988776 9999999865
No 262
>KOG0088|consensus
Probab=97.59 E-value=1.6e-05 Score=70.41 Aligned_cols=61 Identities=23% Similarity=0.329 Sum_probs=43.8
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~~ 426 (445)
.|+++++|...||||||+-+++..+|.. .....-...+....+.+.+.. +.||||+|++.+
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~-kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErf 75 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNC-KHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERF 75 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcch-hhHHHHHHHHhhcccccccceeeeeeeeccchHhh
Confidence 4899999999999999999999988742 111111234555556666553 449999999865
No 263
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=97.59 E-value=0.00012 Score=66.99 Aligned_cols=58 Identities=28% Similarity=0.374 Sum_probs=45.6
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
+..+++++|..|+||||+++++....... . ..|..+....+..++..+.+||.+|...
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~--~--~pT~g~~~~~i~~~~~~~~~~d~gG~~~ 70 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISE--T--IPTIGFNIEEIKYKGYSLTIWDLGGQES 70 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEE--E--EEESSEEEEEEEETTEEEEEEEESSSGG
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccc--c--CcccccccceeeeCcEEEEEEecccccc
Confidence 55899999999999999999998766533 2 2234455666778999999999999864
No 264
>KOG0093|consensus
Probab=97.59 E-value=0.00011 Score=64.46 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=48.1
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRT 425 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~ 425 (445)
+...+++.++|++.|||||++.+++++.+.. ........++...++.-+.+. +.+|||+|++.
T Consensus 18 FDymfKlliiGnssvGKTSfl~ry~ddSFt~-afvsTvGidFKvKTvyr~~kRiklQiwDTagqEr 82 (193)
T KOG0093|consen 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTS-AFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQER 82 (193)
T ss_pred ccceeeEEEEccCCccchhhhHHhhcccccc-ceeeeeeeeEEEeEeeecccEEEEEEEecccchh
Confidence 3445799999999999999999999988753 344445677777776655544 44999999984
No 265
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.57 E-value=5.2e-05 Score=64.79 Aligned_cols=55 Identities=29% Similarity=0.411 Sum_probs=37.2
Q ss_pred EEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEEC--CeeEEEEECCCCCc
Q psy1007 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG--GYPVILLDTAGLRT 425 (445)
Q Consensus 370 lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~--g~~v~l~DTpG~~~ 425 (445)
++|++|+|||||+|++.+..... .....+..+......... +..+.+|||||+..
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 57 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP-EEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQER 57 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC-cccccchhheeeEEEEECCEEEEEEEEecCChHH
Confidence 47999999999999999876521 222233344444444432 45677999999874
No 266
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.57 E-value=7.1e-05 Score=81.07 Aligned_cols=59 Identities=15% Similarity=0.280 Sum_probs=38.5
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEEC------------------CeeEEEEECCCCCcC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG------------------GYPVILLDTAGLRTT 426 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~------------------g~~v~l~DTpG~~~~ 426 (445)
.|+++|.+|+|||||+|+|++..+.. ....++|++.....+..+ ...+.+|||||+..+
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~-~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAK-REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhcccccc-ccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 58999999999999999999886642 222334443222222111 113679999998754
No 267
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.53 E-value=9.1e-05 Score=69.91 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHhhhhcccc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+++++|.+++|||||+++|+...
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~ 24 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQT 24 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Confidence 58999999999999999998753
No 268
>CHL00071 tufA elongation factor Tu
Probab=97.52 E-value=0.0001 Score=76.80 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=45.9
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccce---------------eeecCCCccceEEEEEEEECCeeEEEEECCCCC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQIS---------------IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~---------------~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~ 424 (445)
+.++++++|.+++|||||+|+|++.... ......++|.+.....+..++..+.++||||..
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence 4478999999999999999999864110 112235678777666666677888899999965
No 269
>PRK12735 elongation factor Tu; Reviewed
Probab=97.49 E-value=8.8e-05 Score=76.87 Aligned_cols=63 Identities=13% Similarity=0.171 Sum_probs=46.3
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc-------cce--------eeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK-------QIS--------IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~-------~~~--------~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
++.++++++|.+++|||||+++|++. .+. ......++|.+.....+..++..+.++||||..+
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 45689999999999999999999862 100 0012356787776666666777888999999863
No 270
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.47 E-value=0.00035 Score=70.25 Aligned_cols=62 Identities=23% Similarity=0.384 Sum_probs=41.1
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeee----cCCC---cc--ceEEEEEEEECCeeEE--EEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVT----SIPG---TT--RDVIEKHLDIGGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs----~~~~---tt--~~~~~~~~~~~g~~v~--l~DTpG~~~~ 426 (445)
.|+++++|++|.||||++|.|++.....-. ..+. .| .......+.-+|..+. ++||||+.++
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~ 95 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDF 95 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccc
Confidence 369999999999999999999987432110 1111 22 3333444444565444 9999999955
No 271
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.46 E-value=0.00016 Score=80.21 Aligned_cols=61 Identities=16% Similarity=0.061 Sum_probs=47.4
Q ss_pred cEEEEEcCCCCChhHHhhhhccccc-----eeee------------cCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQI-----SIVT------------SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~-----~~vs------------~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
-+++++|.+|+|||||+|+|+.... ..+. ...++|.+.....+.+++..+.+|||||+.++
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 3799999999999999999974211 1111 13467888888888999999999999999854
No 272
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.46 E-value=9.9e-05 Score=70.08 Aligned_cols=59 Identities=25% Similarity=0.275 Sum_probs=45.3
Q ss_pred EEEEEcCCCCChhHHhhhhccccc------------------------------eeeecCCCccceEEEEEEEECCeeEE
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQI------------------------------SIVTSIPGTTRDVIEKHLDIGGYPVI 416 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~------------------------------~~vs~~~~tt~~~~~~~~~~~g~~v~ 416 (445)
+|+++|.+++|||||+.+|+...- .......++|++.....+.+++..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 479999999999999999863210 00012346888988888989999999
Q ss_pred EEECCCCCc
Q psy1007 417 LLDTAGLRT 425 (445)
Q Consensus 417 l~DTpG~~~ 425 (445)
+|||||+.+
T Consensus 81 liDtpG~~~ 89 (219)
T cd01883 81 ILDAPGHRD 89 (219)
T ss_pred EEECCChHH
Confidence 999999864
No 273
>KOG0075|consensus
Probab=97.45 E-value=7.3e-05 Score=65.66 Aligned_cols=62 Identities=21% Similarity=0.237 Sum_probs=49.8
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
++....+.++|-.++||||++|.+..+++. +....|+.+....+.-++..+.+||.||+..+
T Consensus 17 ~k~emel~lvGLq~sGKtt~Vn~ia~g~~~---edmiptvGfnmrk~tkgnvtiklwD~gGq~rf 78 (186)
T KOG0075|consen 17 WKEEMELSLVGLQNSGKTTLVNVIARGQYL---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 78 (186)
T ss_pred HHheeeEEEEeeccCCcceEEEEEeeccch---hhhcccccceeEEeccCceEEEEEecCCCccH
Confidence 455678999999999999999999887763 44455666777777778888999999999754
No 274
>KOG0073|consensus
Probab=97.45 E-value=0.00026 Score=63.31 Aligned_cols=58 Identities=24% Similarity=0.417 Sum_probs=48.2
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
+.+++.++|..|+||||++++|.+.....+ ..|.-++..++..++..+.+||..|+..
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i----~pt~gf~Iktl~~~~~~L~iwDvGGq~~ 72 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTI----SPTLGFQIKTLEYKGYTLNIWDVGGQKT 72 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCcccc----CCccceeeEEEEecceEEEEEEcCCcch
Confidence 368999999999999999999998874332 3455677778888999999999999974
No 275
>KOG2655|consensus
Probab=97.45 E-value=0.00026 Score=71.55 Aligned_cols=61 Identities=23% Similarity=0.376 Sum_probs=40.9
Q ss_pred cEEEEEcCCCCChhHHhhhhcccccee------eecCCCccceEE--EEEEEECCeeEE--EEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISI------VTSIPGTTRDVI--EKHLDIGGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~------vs~~~~tt~~~~--~~~~~~~g~~v~--l~DTpG~~~~ 426 (445)
|+++++|++|.||||++|.|+...+.. .+..+..|..+. ...+.-+|.++. ++||||+.+.
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~ 92 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDA 92 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccc
Confidence 699999999999999999998874432 111222233333 333444566555 9999999854
No 276
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.43 E-value=0.00012 Score=76.65 Aligned_cols=62 Identities=27% Similarity=0.356 Sum_probs=47.7
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcccccee------------------------------eecCCCccceEEEEEEEECCe
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISI------------------------------VTSIPGTTRDVIEKHLDIGGY 413 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~------------------------------vs~~~~tt~~~~~~~~~~~g~ 413 (445)
+.++++++|.+++|||||+++|+...-.. .....++|.+.....+..++.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 45789999999999999999998521000 012346788888888888888
Q ss_pred eEEEEECCCCCc
Q psy1007 414 PVILLDTAGLRT 425 (445)
Q Consensus 414 ~v~l~DTpG~~~ 425 (445)
.+.+|||||.++
T Consensus 86 ~i~iiDtpGh~~ 97 (426)
T TIGR00483 86 EVTIVDCPGHRD 97 (426)
T ss_pred EEEEEECCCHHH
Confidence 899999999764
No 277
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.41 E-value=0.00014 Score=75.40 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=46.9
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc------cce---------eeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK------QIS---------IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~------~~~---------~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
++.++++++|..++|||||+++|++. ... ......++|.+.....+..++..+.+|||||.+++
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 34589999999999999999999742 100 00123578888877666666778889999998743
No 278
>PLN03127 Elongation factor Tu; Provisional
Probab=97.41 E-value=0.00026 Score=74.49 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=47.9
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc------ccee---------eecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK------QISI---------VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~------~~~~---------vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
++.++++++|..++|||||+++|++. .... .....++|.+.....+..++.++.++||||..+
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 35588999999999999999999732 1110 122367888888777777788889999999874
No 279
>KOG4252|consensus
Probab=97.39 E-value=1.1e-05 Score=72.92 Aligned_cols=67 Identities=28% Similarity=0.349 Sum_probs=49.1
Q ss_pred cccccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCcCC
Q psy1007 360 VRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRTTT 427 (445)
Q Consensus 360 ~~~~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~~~ 427 (445)
......++++++|..+|||||++.++|.+-+.. .+.-....|+....+.+++.. .++|||+|+++++
T Consensus 15 ~d~e~aiK~vivGng~VGKssmiqryCkgifTk-dykktIgvdflerqi~v~~Edvr~mlWdtagqeEfD 83 (246)
T KOG4252|consen 15 TDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTK-DYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFD 83 (246)
T ss_pred hhhhhhEEEEEECCCccchHHHHHHHhcccccc-ccccccchhhhhHHHHhhHHHHHHHHHHhccchhHH
Confidence 334456899999999999999999999776643 333345566666666665543 3499999999874
No 280
>KOG0081|consensus
Probab=97.35 E-value=2.6e-05 Score=69.21 Aligned_cols=60 Identities=28% Similarity=0.348 Sum_probs=43.5
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEEC---------Cee--EEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG---------GYP--VILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~---------g~~--v~l~DTpG~~~~ 426 (445)
++.+.+|++||||+|++.+++...+.. .-+..+..|+..+.+..+ +.. +.+|||+|++.+
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~-qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERF 80 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNT-QFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERF 80 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccc-eeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHH
Confidence 456778999999999999999887742 344455667776666542 233 349999999865
No 281
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=97.33 E-value=0.00029 Score=67.63 Aligned_cols=61 Identities=23% Similarity=0.255 Sum_probs=39.8
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEE-CCeeEEEEECCCCCcCC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDI-GGYPVILLDTAGLRTTT 427 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~-~g~~v~l~DTpG~~~~~ 427 (445)
|++++|++++||||+.+.+..+-.+.-+...+.|.+.....+.. +..++.+||.||+..+.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~ 62 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFM 62 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccc
Confidence 68999999999999998888654332234556777777777754 45588899999998553
No 282
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.31 E-value=0.00016 Score=79.50 Aligned_cols=62 Identities=26% Similarity=0.255 Sum_probs=45.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeee----------cCC----------------------CccceEEEEEEEEC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVT----------SIP----------------------GTTRDVIEKHLDIG 411 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs----------~~~----------------------~tt~~~~~~~~~~~ 411 (445)
+.++++++|.+++|||||+|+|+.......+ ... +.|.+.....+..+
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 4478999999999999999999975432211 112 34555666667777
Q ss_pred CeeEEEEECCCCCc
Q psy1007 412 GYPVILLDTAGLRT 425 (445)
Q Consensus 412 g~~v~l~DTpG~~~ 425 (445)
+.++.++||||..+
T Consensus 103 ~~~~~liDtPG~~~ 116 (632)
T PRK05506 103 KRKFIVADTPGHEQ 116 (632)
T ss_pred CceEEEEECCChHH
Confidence 88889999999764
No 283
>PRK12736 elongation factor Tu; Reviewed
Probab=97.29 E-value=0.00019 Score=74.28 Aligned_cols=63 Identities=13% Similarity=0.132 Sum_probs=46.3
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccccc----------e-----eeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQI----------S-----IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~~----------~-----~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
++.++++++|.+++|||||+++|++... . ......++|.+.....+..++..+.++||||..+
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH
Confidence 4568999999999999999999986310 0 0012456788877666665677888999999763
No 284
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.29 E-value=0.00024 Score=62.88 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=32.5
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~ 424 (445)
.+++++|++|+|||||+++|.+.... ...|.. +.+.+ .++||||-.
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~-----~~KTq~-----i~~~~---~~IDTPGEy 47 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR-----YKKTQA-----IEYYD---NTIDTPGEY 47 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC-----cCccce-----eEecc---cEEECChhh
Confidence 47999999999999999999986541 112222 22333 369999965
No 285
>PRK10218 GTP-binding protein; Provisional
Probab=97.27 E-value=0.00046 Score=75.13 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=46.0
Q ss_pred cEEEEEcCCCCChhHHhhhhccc--ccee-------------eecCCCccceEEEEEEEECCeeEEEEECCCCCcCC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQK--QISI-------------VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT 427 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~--~~~~-------------vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~ 427 (445)
-+++++|..++|||||+++|+.. .+.. .....+.|.......+.+++..+.+|||||..++.
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 47999999999999999999862 1111 01123466666666777888999999999998653
No 286
>PRK12739 elongation factor G; Reviewed
Probab=97.26 E-value=0.00035 Score=77.55 Aligned_cols=60 Identities=18% Similarity=0.132 Sum_probs=47.4
Q ss_pred cEEEEEcCCCCChhHHhhhhccc-----cceeee------------cCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQK-----QISIVT------------SIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~-----~~~~vs------------~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
.+++++|.+++|||||+++|+.. ....+. ...++|.+.....+.+++..+.++||||+.+
T Consensus 9 rni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 9 RNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 47999999999999999999742 111122 2456888888888999999999999999864
No 287
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.23 E-value=0.00033 Score=76.29 Aligned_cols=60 Identities=28% Similarity=0.311 Sum_probs=40.5
Q ss_pred EEEEEcCCCCChhHHhhhhcccccee--------eec------CCCccceEEEEEEEE---CC--eeEEEEECCCCCcC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISI--------VTS------IPGTTRDVIEKHLDI---GG--YPVILLDTAGLRTT 426 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~--------vs~------~~~tt~~~~~~~~~~---~g--~~v~l~DTpG~~~~ 426 (445)
+++++|.+++|||||+++|+...... +.+ ..|.|.+.....+.+ ++ ..+.+|||||+.++
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 68999999999999999998642110 111 124555554444544 33 46679999999865
No 288
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.21 E-value=0.00037 Score=75.69 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCChhHHhhhhccccc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQI 390 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~ 390 (445)
-.|+++|.+|+|||||+|+|.+...
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v 31 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAV 31 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCccc
Confidence 4689999999999999999987654
No 289
>PLN03126 Elongation factor Tu; Provisional
Probab=97.18 E-value=0.00035 Score=74.07 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=47.1
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccccce---------------eeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQIS---------------IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~~~---------------~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
++.++++++|.+++|||||+++|+..... .-....+.|.+.....+..++..+.++||||..++
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 35579999999999999999999852110 01223456777776667777888899999998743
No 290
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.17 E-value=0.00048 Score=75.24 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=43.1
Q ss_pred EEEEEcCCCCChhHHhhhhccccce--eeecCCCccceEEEEEEEE-CCeeEEEEECCCCCcC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQIS--IVTSIPGTTRDVIEKHLDI-GGYPVILLDTAGLRTT 426 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~--~vs~~~~tt~~~~~~~~~~-~g~~v~l~DTpG~~~~ 426 (445)
.++++|.+++|||||+++|++.+.. ......+.|.+.....+.. ++..+.+|||||.+.+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~f 64 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKF 64 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHH
Confidence 5789999999999999999974321 1123356777766555544 5667789999998643
No 291
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.16 E-value=0.00041 Score=64.01 Aligned_cols=60 Identities=25% Similarity=0.302 Sum_probs=45.0
Q ss_pred cEEEEEcCCCCChhHHhhhhcccccee-----------------eecCCCccceEEEEEEE--ECCeeEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISI-----------------VTSIPGTTRDVIEKHLD--IGGYPVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~-----------------vs~~~~tt~~~~~~~~~--~~g~~v~l~DTpG~~~ 425 (445)
.+|+++|+.++|||||+++|+...... .....+.|.+.....+. .++..+.++||||..+
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 579999999999999999998653210 01123466666677777 7889999999999864
No 292
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.13 E-value=0.00045 Score=73.30 Aligned_cols=63 Identities=25% Similarity=0.293 Sum_probs=45.2
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccccceeee--------------------------------cCCCccceEEEEEEEE
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT--------------------------------SIPGTTRDVIEKHLDI 410 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs--------------------------------~~~~tt~~~~~~~~~~ 410 (445)
+..++++++|.+++|||||+++|+........ ..-+.|.+.....+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 35589999999999999999999854321100 0113456766666777
Q ss_pred CCeeEEEEECCCCCc
Q psy1007 411 GGYPVILLDTAGLRT 425 (445)
Q Consensus 411 ~g~~v~l~DTpG~~~ 425 (445)
++..+.+|||||..+
T Consensus 105 ~~~~i~~iDTPGh~~ 119 (474)
T PRK05124 105 EKRKFIIADTPGHEQ 119 (474)
T ss_pred CCcEEEEEECCCcHH
Confidence 788889999999653
No 293
>PRK00007 elongation factor G; Reviewed
Probab=97.09 E-value=0.00078 Score=74.79 Aligned_cols=61 Identities=16% Similarity=0.079 Sum_probs=47.4
Q ss_pred cEEEEEcCCCCChhHHhhhhcc---c--cceeee------------cCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQ---K--QISIVT------------SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~---~--~~~~vs------------~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
.+++++|.+|+|||||+|+|+. . ....++ ...++|.+.....+.+++..+.++||||..++
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 4899999999999999999963 1 111122 24568888888888899999999999998643
No 294
>PRK00049 elongation factor Tu; Reviewed
Probab=97.09 E-value=0.00052 Score=71.18 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=46.2
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccccce---------------eeecCCCccceEEEEEEEECCeeEEEEECCCCC
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQIS---------------IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~~~---------------~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~ 424 (445)
++.++++++|.+++|||||+++|++.... ......++|.+.....+..++..+.++||||..
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 86 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA 86 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH
Confidence 34578999999999999999999863100 001245678887766666677888899999986
No 295
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.09 E-value=0.00056 Score=74.42 Aligned_cols=60 Identities=20% Similarity=0.279 Sum_probs=45.3
Q ss_pred EEEEEcCCCCChhHHhhhhcccc--ce---ee----------ecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQ--IS---IV----------TSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~--~~---~v----------s~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
+++++|..++|||||+++|+... +. .+ ...-+.|.......+.+++..+.+|||||..++
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF 77 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADF 77 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHH
Confidence 68999999999999999998531 11 01 112356777767778889999999999999755
No 296
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.04 E-value=0.00043 Score=72.00 Aligned_cols=61 Identities=25% Similarity=0.304 Sum_probs=44.6
Q ss_pred cEEEEEcCCCCChhHHhhhhcccccee--------------------------e------ecCCCccceEEEEEEEECCe
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISI--------------------------V------TSIPGTTRDVIEKHLDIGGY 413 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~--------------------------v------s~~~~tt~~~~~~~~~~~g~ 413 (445)
++++++|..++|||||+++|+...-.. + ...-+.|.+.....+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 478999999999999999997432110 0 01124567887777878888
Q ss_pred eEEEEECCCCCcC
Q psy1007 414 PVILLDTAGLRTT 426 (445)
Q Consensus 414 ~v~l~DTpG~~~~ 426 (445)
.+.++||||..++
T Consensus 81 ~~~liDtPGh~~f 93 (406)
T TIGR02034 81 KFIVADTPGHEQY 93 (406)
T ss_pred EEEEEeCCCHHHH
Confidence 8999999997643
No 297
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.04 E-value=0.0012 Score=59.15 Aligned_cols=75 Identities=25% Similarity=0.189 Sum_probs=49.1
Q ss_pred cCcceEeeccCCChHHHhhhhccCCCCCCCCCeEEEeeeeecCCCCeeecCceeeecCCCCCcCCCceeEEEecCcHHHH
Q psy1007 100 KCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVI 179 (445)
Q Consensus 100 ~~giavIrisGp~a~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~~f~~p~syTGEd~~Ei~~hg~~~v~ 179 (445)
..+.+++.||||.+..++++++..+..+..++...+-...++- += .+..+ ||||++||+|+.+.+
T Consensus 75 s~~~~~l~lqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~i~~--------~~--v~i~R---tGE~GfEi~v~~s~a-- 139 (152)
T TIGR01375 75 SGGRTALRISGPMAEEVLAKGCAVDLSLSAFPVGAGRRTIFGK--------IA--AVIWR---TGEDTFEIIVRRSFA-- 139 (152)
T ss_pred cCCEEEEEEEChhHHHHHHhcCCCCCCcccCCCCcEEEEEEcC--------eE--EEEEE---cCCCeEEEEEEhhHH--
Confidence 3457999999999999999997544332113322222222221 11 22223 599999999999998
Q ss_pred HHHHHHHhcC
Q psy1007 180 NAILGALTKL 189 (445)
Q Consensus 180 ~~i~~~l~~~ 189 (445)
..+|+.|...
T Consensus 140 ~~lw~~L~~a 149 (152)
T TIGR01375 140 ESLWHWLVDA 149 (152)
T ss_pred HHHHHHHHHH
Confidence 6699998764
No 298
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.04 E-value=0.00075 Score=72.41 Aligned_cols=61 Identities=21% Similarity=0.234 Sum_probs=41.6
Q ss_pred cEEEEEcCCCCChhHHhhhhcc--cc---ceee----------ecCC------CccceEEEEEEEECCeeEEEEECCCCC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQ--KQ---ISIV----------TSIP------GTTRDVIEKHLDIGGYPVILLDTAGLR 424 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~--~~---~~~v----------s~~~------~tt~~~~~~~~~~~g~~v~l~DTpG~~ 424 (445)
.+++++|.+++|||||+++|+. +. .+.+ ++.. +.+.......+.+++..+.+|||||..
T Consensus 11 Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~ 90 (526)
T PRK00741 11 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHE 90 (526)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCch
Confidence 5899999999999999999963 11 1111 1110 223334445677788899999999987
Q ss_pred cC
Q psy1007 425 TT 426 (445)
Q Consensus 425 ~~ 426 (445)
++
T Consensus 91 df 92 (526)
T PRK00741 91 DF 92 (526)
T ss_pred hh
Confidence 54
No 299
>PRK13351 elongation factor G; Reviewed
Probab=96.94 E-value=0.00074 Score=74.97 Aligned_cols=61 Identities=21% Similarity=0.147 Sum_probs=43.6
Q ss_pred cEEEEEcCCCCChhHHhhhhccccc-----eee------ec------CCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQI-----SIV------TS------IPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~-----~~v------s~------~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
.+++++|..|+|||||+++|+...- ..+ .+ ..+.|.......+.+++..+.+|||||..++
T Consensus 9 rni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 9 RNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 5899999999999999999985311 000 00 1234555555667788899999999998743
No 300
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=96.93 E-value=0.0011 Score=62.03 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChhHHhhhhccc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
++++++|.+|+|||||+..+.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~ 23 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV 23 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999754
No 301
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=96.92 E-value=0.00093 Score=63.78 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHhhhhccc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+++++|..+.|||||+.+|+..
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~ 23 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLAS 23 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 302
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=96.92 E-value=0.0013 Score=70.70 Aligned_cols=62 Identities=19% Similarity=0.206 Sum_probs=42.2
Q ss_pred CcEEEEEcCCCCChhHHhhhhccc--c---ceeee----------cC------CCccceEEEEEEEECCeeEEEEECCCC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQK--Q---ISIVT----------SI------PGTTRDVIEKHLDIGGYPVILLDTAGL 423 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~--~---~~~vs----------~~------~~tt~~~~~~~~~~~g~~v~l~DTpG~ 423 (445)
-.+++++|.+++|||||+++|+.. . .+.+. +. -+.+.......+.+++..+.+|||||+
T Consensus 11 ~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~ 90 (527)
T TIGR00503 11 RRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGH 90 (527)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCCh
Confidence 358999999999999999998531 1 11111 10 123334445567778899999999999
Q ss_pred CcC
Q psy1007 424 RTT 426 (445)
Q Consensus 424 ~~~ 426 (445)
.++
T Consensus 91 ~df 93 (527)
T TIGR00503 91 EDF 93 (527)
T ss_pred hhH
Confidence 744
No 303
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=96.77 E-value=0.0015 Score=72.79 Aligned_cols=62 Identities=21% Similarity=0.179 Sum_probs=39.9
Q ss_pred cEEEEEcCCCCChhHHhhhhcccc---------------ceeeecCCCccceEEEE----EEEECCeeEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQ---------------ISIVTSIPGTTRDVIEK----HLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~---------------~~~vs~~~~tt~~~~~~----~~~~~g~~v~l~DTpG~~~~ 426 (445)
.+|+++|..++|||||+++|+... +.......+.|.+.... .+.+++..+.+|||||+.++
T Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f 99 (720)
T TIGR00490 20 RNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDF 99 (720)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcccc
Confidence 589999999999999999997421 00000112334433222 23446778889999999864
Q ss_pred C
Q psy1007 427 T 427 (445)
Q Consensus 427 ~ 427 (445)
.
T Consensus 100 ~ 100 (720)
T TIGR00490 100 G 100 (720)
T ss_pred H
Confidence 3
No 304
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.74 E-value=0.0025 Score=60.81 Aligned_cols=56 Identities=18% Similarity=0.313 Sum_probs=38.0
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcccc-ceeeecCCCccceEEEEEEEECCeeEEEEECCCC
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQ-ISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGL 423 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~-~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~ 423 (445)
..+..++++|.+|+|||||+|.+++.. ...++...++ .. ....++..+.++||||.
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~---i~--i~~~~~~~i~~vDtPg~ 93 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP---IT--VVTGKKRRLTFIECPND 93 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc---EE--EEecCCceEEEEeCCch
Confidence 467889999999999999999998752 2122222332 11 12235677889999984
No 305
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=96.69 E-value=0.00088 Score=61.78 Aligned_cols=56 Identities=20% Similarity=0.249 Sum_probs=33.6
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEE---CCeeEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDI---GGYPVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~---~g~~v~l~DTpG~~~~ 426 (445)
-.|+++|++|+|||+|+..|..+.... ..|..... ....+ .+..+.++|+||....
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~----T~tS~e~n-~~~~~~~~~~~~~~lvD~PGH~rl 62 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVP----TVTSMENN-IAYNVNNSKGKKLRLVDIPGHPRL 62 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS-------B---SSEE-EECCGSSTCGTCECEEEETT-HCC
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCC----eeccccCC-ceEEeecCCCCEEEEEECCCcHHH
Confidence 368999999999999999999874321 11111111 11222 4557779999998754
No 306
>PRK05433 GTP-binding protein LepA; Provisional
Probab=96.69 E-value=0.0016 Score=71.06 Aligned_cols=60 Identities=25% Similarity=0.226 Sum_probs=39.5
Q ss_pred EEEEEcCCCCChhHHhhhhccccce--------eee------cCCCccceEEEEEEEEC-----CeeEEEEECCCCCcC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQIS--------IVT------SIPGTTRDVIEKHLDIG-----GYPVILLDTAGLRTT 426 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~--------~vs------~~~~tt~~~~~~~~~~~-----g~~v~l~DTpG~~~~ 426 (445)
+++++|..++|||||+.+|+...-. .+. ..-+.|.......+.+. +..+.+|||||+.++
T Consensus 9 Ni~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 9 NFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 7899999999999999999753110 000 11244544444444442 456779999999865
No 307
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.64 E-value=0.0069 Score=62.13 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=23.8
Q ss_pred ccccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 361 RIRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 361 ~~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+.++-.++|+|++||||||++.+|...
T Consensus 133 ~~~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 133 LMERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3456778999999999999999998754
No 308
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=96.60 E-value=0.0018 Score=68.13 Aligned_cols=63 Identities=24% Similarity=0.288 Sum_probs=46.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccc-----------------e-------------eeecCCCccceEEEEEEEECCe
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQI-----------------S-------------IVTSIPGTTRDVIEKHLDIGGY 413 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~-----------------~-------------~vs~~~~tt~~~~~~~~~~~g~ 413 (445)
+.++++++|..++|||||+.+|+...- . ......+.|.+.....+..++.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 447899999999999999998875210 0 0011235677777777888888
Q ss_pred eEEEEECCCCCcC
Q psy1007 414 PVILLDTAGLRTT 426 (445)
Q Consensus 414 ~v~l~DTpG~~~~ 426 (445)
.+.++||||..++
T Consensus 86 ~i~lIDtPGh~~f 98 (446)
T PTZ00141 86 YFTIIDAPGHRDF 98 (446)
T ss_pred EEEEEECCChHHH
Confidence 9999999997643
No 309
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=96.60 E-value=0.002 Score=61.59 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHhhhhccc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+++++|++++|||||+++|+..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~ 22 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQG 22 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 310
>COG2229 Predicted GTPase [General function prediction only]
Probab=96.59 E-value=0.0027 Score=57.99 Aligned_cols=64 Identities=22% Similarity=0.262 Sum_probs=45.6
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceee-------ecCC--CccceEEEEEEEECC-eeEEEEECCCCCcCC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIV-------TSIP--GTTRDVIEKHLDIGG-YPVILLDTAGLRTTT 427 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~v-------s~~~--~tt~~~~~~~~~~~g-~~v~l~DTpG~~~~~ 427 (445)
.+.+++++|+-++||||++.+++......+ +... .||.-.-...+.+++ ..+.++||||+.++.
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFK 82 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHH
Confidence 456899999999999999999998753221 2222 255544445555555 788899999998663
No 311
>KOG1487|consensus
Probab=96.52 E-value=0.0029 Score=60.82 Aligned_cols=66 Identities=30% Similarity=0.362 Sum_probs=54.3
Q ss_pred ccCc-EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCCCC
Q psy1007 363 RSGI-KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429 (445)
Q Consensus 363 ~~~~-~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~~ 429 (445)
+.+. +|.++|-|.+||||++..+++-. ..+..+.+||-......+...|.++.+.|.||+.+...|
T Consensus 56 ktg~a~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakd 122 (358)
T KOG1487|consen 56 KTGDARVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKD 122 (358)
T ss_pred eecceeeeEEecCccchhhhhhhhcCCC-CccccccceeEEEecceEeccccceeeecCcchhccccc
Confidence 3455 89999999999999999999754 355677788888888888889999999999999865443
No 312
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.42 E-value=0.014 Score=60.76 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=23.0
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+..|-.++++|++|+||||++..|.+.
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 346778999999999999999988753
No 313
>KOG0070|consensus
Probab=96.39 E-value=0.0058 Score=55.88 Aligned_cols=58 Identities=19% Similarity=0.321 Sum_probs=44.6
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
+..+|+++|--|+||||++.+|-..+.. +..|....++. .+.+.+..+.+||..|+..
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~v--ttvPTiGfnVE--~v~ykn~~f~vWDvGGq~k 73 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTVPTIGFNVE--TVEYKNISFTVWDVGGQEK 73 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcc--cCCCcccccee--EEEEcceEEEEEecCCCcc
Confidence 4579999999999999999999877753 33554444444 4666788888999999953
No 314
>PRK09866 hypothetical protein; Provisional
Probab=96.38 E-value=0.023 Score=61.66 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=28.8
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTR 401 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~ 401 (445)
+.++++|++|+|||||+|+++|......+..+.++.
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~l 105 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTAL 105 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccc
Confidence 789999999999999999999987765444444444
No 315
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=96.36 E-value=0.0023 Score=66.65 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.0
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.++++++|.+++|||||+++|.+.
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~ 27 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGV 27 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCe
Confidence 3478999999999999999999763
No 316
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=96.35 E-value=0.0038 Score=55.97 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=21.6
Q ss_pred EEEEcCCCCChhHHhhhhcccccee
Q psy1007 368 SVIVGEPNVGKSSLMNFLCQKQISI 392 (445)
Q Consensus 368 v~lvG~~~vGKSsLln~l~~~~~~~ 392 (445)
|+++|..++|||||+|+|+|.....
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp 25 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILP 25 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SS
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCc
Confidence 6899999999999999999987543
No 317
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.25 E-value=0.0022 Score=58.96 Aligned_cols=53 Identities=26% Similarity=0.414 Sum_probs=36.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEE
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLD 419 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~D 419 (445)
.|.-+++.|||||||||+++.|+... ..--....|||...... ++|....+++
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gE--v~G~dY~Fvs 55 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGE--VDGVDYFFVT 55 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCC--cCCceeEeCC
Confidence 56788999999999999999999876 22123345776665433 3565555443
No 318
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=96.13 E-value=0.0036 Score=65.26 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.2
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.++++++|..++|||||+.+|.+.
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~ 32 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGV 32 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCe
Confidence 5589999999999999999999653
No 319
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.11 E-value=0.061 Score=56.21 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=19.6
Q ss_pred CcEEEEEcCCCCChhHHhhhhc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLC 386 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~ 386 (445)
...++++|.+|+||||++..|.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999886
No 320
>KOG1673|consensus
Probab=96.09 E-value=0.0039 Score=55.45 Aligned_cols=61 Identities=23% Similarity=0.355 Sum_probs=47.7
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEE--EEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~~ 426 (445)
.++|.++|++-+||+||+-.+.+..+.+ ........++....+.+.|..+. +||..|++++
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de-~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~ 82 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDE-EYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREF 82 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHH-HHHHHhCccceeeEEEecceEEEEEEEecCCcHhh
Confidence 3789999999999999999999987642 22233456677777888877666 9999999954
No 321
>KOG3883|consensus
Probab=95.95 E-value=0.013 Score=52.17 Aligned_cols=62 Identities=26% Similarity=0.292 Sum_probs=47.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC---eeEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG---YPVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g---~~v~l~DTpG~~~ 425 (445)
+..+|+++|.-+||||+++..++-.+....++..+|-.|.+...++-+. ..+.+.||+|+..
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~ 72 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQG 72 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccC
Confidence 5679999999999999999988755433334555677888887776542 2556999999984
No 322
>KOG0074|consensus
Probab=95.87 E-value=0.019 Score=50.48 Aligned_cols=59 Identities=22% Similarity=0.396 Sum_probs=44.8
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC-eeEEEEECCCCCc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG-YPVILLDTAGLRT 425 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g-~~v~l~DTpG~~~ 425 (445)
++.+++.++|-.|+||||+++.|.+.+... . ..|..+....+..+| ..+.+||..|++.
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~h---l-tpT~GFn~k~v~~~g~f~LnvwDiGGqr~ 74 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRH---L-TPTNGFNTKKVEYDGTFHLNVWDIGGQRG 74 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhh---c-cccCCcceEEEeecCcEEEEEEecCCccc
Confidence 466899999999999999999999876532 2 233445556666666 6777999999874
No 323
>KOG0096|consensus
Probab=95.80 E-value=0.015 Score=53.54 Aligned_cols=63 Identities=22% Similarity=0.222 Sum_probs=42.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEE-CC-eeEEEEECCCCCcCC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDI-GG-YPVILLDTAGLRTTT 427 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~-~g-~~v~l~DTpG~~~~~ 427 (445)
.+++++++|+.|.||+|++++.+.+.+.. ...+++..+...-...- .| ..+..|||+|++...
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~-~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~g 73 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEK-TYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKG 73 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhccccee-cccCcceeEEeeeeeecccCcEEEEeeecccceeec
Confidence 46899999999999999999999888753 33333333332211111 13 445599999998653
No 324
>PRK12740 elongation factor G; Reviewed
Probab=95.77 E-value=0.0094 Score=66.04 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=39.3
Q ss_pred EcCCCCChhHHhhhhccccce-----e------ee------cCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 371 VGEPNVGKSSLMNFLCQKQIS-----I------VT------SIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 371 vG~~~vGKSsLln~l~~~~~~-----~------vs------~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
+|.+|+|||||+++|+...-. . +. ...+.|.+.....+.+++..+.+|||||..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~ 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH
Confidence 589999999999999543211 0 01 1234566666677888999999999999874
No 325
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.69 E-value=0.0068 Score=56.22 Aligned_cols=42 Identities=26% Similarity=0.218 Sum_probs=29.6
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEE
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIE 405 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~ 405 (445)
.+.-++|+|+||+|||||++.|+...-......+.|||....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~ 44 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRP 44 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCC
Confidence 356789999999999999999987542212234557765543
No 326
>KOG3859|consensus
Probab=95.65 E-value=0.01 Score=57.61 Aligned_cols=60 Identities=23% Similarity=0.387 Sum_probs=38.9
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceee---ecCCCccceEEEEEEEECCeeE--EEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIV---TSIPGTTRDVIEKHLDIGGYPV--ILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~v---s~~~~tt~~~~~~~~~~~g~~v--~l~DTpG~~~ 425 (445)
|+++-+|.+|.|||||+..|.+..+... ...|++.....++.+.-.+..+ .++||.|+.+
T Consensus 43 FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGD 107 (406)
T KOG3859|consen 43 FNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGD 107 (406)
T ss_pred EEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccccc
Confidence 5889999999999999999998776421 1122222222233333344433 4999999973
No 327
>PTZ00416 elongation factor 2; Provisional
Probab=95.50 E-value=0.011 Score=67.04 Aligned_cols=61 Identities=21% Similarity=0.194 Sum_probs=39.1
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCC---------------CccceEEEEEEEEC----------CeeEEEEEC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP---------------GTTRDVIEKHLDIG----------GYPVILLDT 420 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~---------------~tt~~~~~~~~~~~----------g~~v~l~DT 420 (445)
-+++++|..++|||||+++|+...-....... ++|.+.....+.++ +..+.++||
T Consensus 20 rni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDt 99 (836)
T PTZ00416 20 RNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDS 99 (836)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcC
Confidence 38999999999999999999864221101111 23333322334443 556789999
Q ss_pred CCCCcC
Q psy1007 421 AGLRTT 426 (445)
Q Consensus 421 pG~~~~ 426 (445)
||..++
T Consensus 100 PG~~~f 105 (836)
T PTZ00416 100 PGHVDF 105 (836)
T ss_pred CCHHhH
Confidence 998754
No 328
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.48 E-value=0.0068 Score=55.23 Aligned_cols=25 Identities=40% Similarity=0.615 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
|..++++|++|+||||+++.|....
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccC
Confidence 3568999999999999999998753
No 329
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.42 E-value=0.0055 Score=62.81 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.8
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
++..++++||+||||||.+-.|..+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar 226 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAAR 226 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHH
Confidence 4678999999999999999888764
No 330
>KOG2486|consensus
Probab=95.40 E-value=0.019 Score=55.96 Aligned_cols=57 Identities=30% Similarity=0.318 Sum_probs=40.8
Q ss_pred CcEEEEEcCCCCChhHHhhhhcccccee--eecCCCccceEEEEEEEECCeeEEEEECCCCC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISI--VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~--vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~ 424 (445)
...+++.|.+|||||||+|.++..+... .+..++-|+......+ |...+++|.||..
T Consensus 136 ~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~ 194 (320)
T KOG2486|consen 136 RPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYG 194 (320)
T ss_pred CceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec---cceEEEEecCCcc
Confidence 3689999999999999999999865321 1235566665554333 4567899999943
No 331
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.37 E-value=0.011 Score=56.78 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=23.7
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
.+|=-|+++|+||||||||+|.+.|-.
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 466779999999999999999999854
No 332
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.29 E-value=0.096 Score=56.01 Aligned_cols=28 Identities=25% Similarity=0.339 Sum_probs=24.0
Q ss_pred cccccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 360 VRIRSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 360 ~~~~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
..+..|..++|+|++|+||||++..|..
T Consensus 345 ~~l~~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 345 DPLERGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4456788999999999999999988875
No 333
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=95.25 E-value=0.018 Score=65.44 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCChhHHhhhhccc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+|+++|..++|||||+.+|+..
T Consensus 20 rni~iiGhvd~GKTTL~~~Ll~~ 42 (843)
T PLN00116 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 47999999999999999999854
No 334
>PRK07560 elongation factor EF-2; Reviewed
Probab=95.23 E-value=0.032 Score=62.49 Aligned_cols=61 Identities=21% Similarity=0.177 Sum_probs=39.1
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceee---------ecC------CCccceEEEEEEEE----CCeeEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIV---------TSI------PGTTRDVIEKHLDI----GGYPVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~v---------s~~------~~tt~~~~~~~~~~----~g~~v~l~DTpG~~~~ 426 (445)
-+++++|..++|||||+.+|+...-... .+. -+.|.+.....+.+ ++..+.++||||..++
T Consensus 21 Rni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df 100 (731)
T PRK07560 21 RNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDF 100 (731)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccCh
Confidence 4799999999999999999975321110 011 12344433333333 3567789999999864
No 335
>KOG0071|consensus
Probab=95.20 E-value=0.042 Score=48.27 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=51.5
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC----------------C
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT----------------T 427 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~----------------~ 427 (445)
+..+++.+|-.++||||++-.|.-.+. +...|.+. +....+.+.+..+.+||..|+... -
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~--~~~ipTvG--FnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQS--VTTIPTVG--FNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCC--cccccccc--eeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 357899999999999999999886543 23334343 444456667777789999998532 1
Q ss_pred CCcccHHHHHHHHHhh
Q psy1007 428 SDIIETEGNLLEKNNQ 443 (445)
Q Consensus 428 ~~~~e~~~i~~~~~~~ 443 (445)
.|......++.|++|+
T Consensus 92 ~Dsa~~dr~eeAr~EL 107 (180)
T KOG0071|consen 92 VDSADRDRIEEARNEL 107 (180)
T ss_pred EeccchhhHHHHHHHH
Confidence 2334456666676665
No 336
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.13 E-value=0.016 Score=50.05 Aligned_cols=29 Identities=34% Similarity=0.415 Sum_probs=25.1
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQI 390 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~~ 390 (445)
+.+|-.++++|++|+|||||++.+++...
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred EcCCCEEEEEccCCCccccceeeeccccc
Confidence 34677899999999999999999998653
No 337
>KOG2929|consensus
Probab=95.12 E-value=0.059 Score=53.20 Aligned_cols=96 Identities=22% Similarity=0.227 Sum_probs=70.3
Q ss_pred CCCCCCCCCcEEEEccCCCCceEEEEEEecccHHHHHHHhcCCCCCCC--------CCCceeEEeeeecCCCCceecceE
Q psy1007 20 RCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKV--------PKPRYASLRNIVDPVSKVVLDEGL 91 (445)
Q Consensus 20 ~~~~~~~~dtI~A~at~~g~~ai~viRiSG~~a~~i~~~l~~~~~~~~--------~~~~~~~~~~~~d~~~g~~iD~~i 91 (445)
..++..+.|-+++++--.++ .+|||+|||+..+|+-|+++ |... +..+...|..++|.+ |.++=|+|
T Consensus 19 ~~~~~~~~~~~~~~~~L~~R---sliRv~GpDtvkFLqGL~TN-dv~~~~p~~~~a~~t~~~~Ya~fLN~q-GR~LyD~i 93 (348)
T KOG2929|consen 19 DASPSGQPDANFNLSLLESR---SLIRVRGPDTVKFLQGLLTN-DVTRHFPGIQGAPITRNGLYAAFLNTQ-GRLLYDTI 93 (348)
T ss_pred CccccccccccceeeecCCc---eEEEEeCccHHHHHhhhhcc-cccccCcccccCCCCCchhhhhhhccC-ccEEEEEE
Confidence 44455555666666555444 57999999999999999984 4433 556788999999987 78888888
Q ss_pred EEeecccccCcceEeeccCCChHHHhhhh
Q psy1007 92 CLWFPRHGKCGVSVIRVSGPDTLNALKSM 120 (445)
Q Consensus 92 ~~~~~~~~~~giavIrisGp~a~~il~~l 120 (445)
.|--+.+.....=.++.+|...-...+.+
T Consensus 94 LY~~~~~~~~~~~llE~d~~~~~~~~khl 122 (348)
T KOG2929|consen 94 LYPTPVPVSEPELLLECDGSVVGDFLKHL 122 (348)
T ss_pred EecCCCCCCCCceEEEecCccchHHHHHH
Confidence 88766666666778888887666666555
No 338
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=95.10 E-value=0.013 Score=50.44 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCChhHHhhhhccccc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQI 390 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~ 390 (445)
.+++++|..|+||+||.++|.|...
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~ 26 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDT 26 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchh
Confidence 4789999999999999999998653
No 339
>PLN00043 elongation factor 1-alpha; Provisional
Probab=95.07 E-value=0.02 Score=60.38 Aligned_cols=63 Identities=24% Similarity=0.281 Sum_probs=45.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccc------------------------e------eeecCCCccceEEEEEEEECCe
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQI------------------------S------IVTSIPGTTRDVIEKHLDIGGY 413 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~------------------------~------~vs~~~~tt~~~~~~~~~~~g~ 413 (445)
+.++++++|..++|||||+-+|+...- + .....-+.|.+.....+..++.
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 457899999999999999987763110 0 0011224677777777777888
Q ss_pred eEEEEECCCCCcC
Q psy1007 414 PVILLDTAGLRTT 426 (445)
Q Consensus 414 ~v~l~DTpG~~~~ 426 (445)
.+.++||||..++
T Consensus 86 ~i~liDtPGh~df 98 (447)
T PLN00043 86 YCTVIDAPGHRDF 98 (447)
T ss_pred EEEEEECCCHHHH
Confidence 8899999998754
No 340
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.05 E-value=0.018 Score=53.66 Aligned_cols=26 Identities=35% Similarity=0.599 Sum_probs=23.0
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+|..++++|++|+|||||++.|.+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35678999999999999999999875
No 341
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.94 E-value=0.02 Score=53.90 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.9
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
++..++|+|++|+|||||++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 5567899999999999999999754
No 342
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.89 E-value=0.021 Score=50.11 Aligned_cols=54 Identities=24% Similarity=0.285 Sum_probs=32.6
Q ss_pred EEEEcCCCCChhHHhhhhccccce-eeecCCCccceEEEEEEEECCeeEEEEECCCC
Q psy1007 368 SVIVGEPNVGKSSLMNFLCQKQIS-IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGL 423 (445)
Q Consensus 368 v~lvG~~~vGKSsLln~l~~~~~~-~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~ 423 (445)
++++|++|+|||||++.|....-. .......||+...... .+|....++|...+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~ 56 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEF 56 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHH
Confidence 688999999999999999875211 1122334555443222 35555556654433
No 343
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=94.78 E-value=0.033 Score=57.09 Aligned_cols=64 Identities=23% Similarity=0.361 Sum_probs=46.5
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcccc------------------------cee------eecCCCccceEEEEEEEECCe
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQ------------------------ISI------VTSIPGTTRDVIEKHLDIGGY 413 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~------------------------~~~------vs~~~~tt~~~~~~~~~~~g~ 413 (445)
..++++++|...+|||||+-+|+-+. ++- ....-|.|.+.....++-+-.
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 44789999999999999999886420 000 012335678888777777777
Q ss_pred eEEEEECCCCCcCC
Q psy1007 414 PVILLDTAGLRTTT 427 (445)
Q Consensus 414 ~v~l~DTpG~~~~~ 427 (445)
.+.|+|+||.++|-
T Consensus 86 ~~tIiDaPGHrdFv 99 (428)
T COG5256 86 NFTIIDAPGHRDFV 99 (428)
T ss_pred eEEEeeCCchHHHH
Confidence 78899999977553
No 344
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.71 E-value=0.16 Score=52.20 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=22.1
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
+..+..++++|++|+||||++..+..
T Consensus 203 ~~~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred ecCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567889999999999999998874
No 345
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.67 E-value=0.023 Score=54.19 Aligned_cols=28 Identities=39% Similarity=0.529 Sum_probs=24.1
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|+||+|||||+|.+.+-+
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3577789999999999999999988654
No 346
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.65 E-value=0.021 Score=52.56 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=23.6
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
..|-+++++|++|+|||||+|.+.|-.
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhcc
Confidence 356789999999999999999998843
No 347
>KOG0090|consensus
Probab=94.47 E-value=0.035 Score=52.16 Aligned_cols=56 Identities=25% Similarity=0.259 Sum_probs=39.8
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
-.|.++|++++|||+|+-.|..+... ...|...........++..+.++|.||-.+
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~----~TvtSiepn~a~~r~gs~~~~LVD~PGH~r 94 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHR----GTVTSIEPNEATYRLGSENVTLVDLPGHSR 94 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCcc----CeeeeeccceeeEeecCcceEEEeCCCcHH
Confidence 46899999999999999999876321 112333444555556666678999999763
No 348
>KOG1707|consensus
Probab=94.43 E-value=0.038 Score=58.75 Aligned_cols=57 Identities=21% Similarity=0.423 Sum_probs=37.6
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEE-EEEEEECCeeEEEEECC
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVI-EKHLDIGGYPVILLDTA 421 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~-~~~~~~~g~~v~l~DTp 421 (445)
+...+|+++|+.|||||||+.+++...+.. ..|..--.+. ...+.-+..+..++||.
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~--~VP~rl~~i~IPadvtPe~vpt~ivD~s 64 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVD--AVPRRLPRILIPADVTPENVPTSIVDTS 64 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccc--cccccCCccccCCccCcCcCceEEEecc
Confidence 456899999999999999999999988742 3332111100 01122244556799997
No 349
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.42 E-value=0.029 Score=51.54 Aligned_cols=27 Identities=30% Similarity=0.293 Sum_probs=23.5
Q ss_pred ccccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 361 RIRSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 361 ~~~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.+.+|-.++++|++|+|||||++.+++
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 345788999999999999999999874
No 350
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.40 E-value=0.026 Score=52.86 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=23.2
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+| .++++|++|+|||||++.+++-
T Consensus 23 i~~g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 23 LGPG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred EcCC-cEEEECCCCCCHHHHHHHHhCC
Confidence 3468 8999999999999999999975
No 351
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.34 E-value=0.026 Score=52.04 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.9
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+..++++|++|+||||+++.+++.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45678999999999999999998864
No 352
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.32 E-value=0.029 Score=56.65 Aligned_cols=28 Identities=29% Similarity=0.519 Sum_probs=23.9
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|=-++++|+||+|||||++.+.|-.
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4466678999999999999999999843
No 353
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.32 E-value=0.031 Score=52.34 Aligned_cols=28 Identities=36% Similarity=0.481 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3477789999999999999999999853
No 354
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.31 E-value=0.031 Score=52.58 Aligned_cols=28 Identities=39% Similarity=0.506 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3477889999999999999999999853
No 355
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.29 E-value=0.03 Score=51.51 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=25.1
Q ss_pred ccccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 361 RIRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 361 ~~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
.+.+|-.++++|++|+|||||++.+++-.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34578899999999999999999998753
No 356
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.28 E-value=0.032 Score=53.25 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4577889999999999999999999853
No 357
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.26 E-value=0.033 Score=52.38 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3477889999999999999999999853
No 358
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.25 E-value=0.03 Score=47.25 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHhhhhccc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.++|.|+||+||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999875
No 359
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.24 E-value=0.038 Score=41.81 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=18.9
Q ss_pred CcEEEEEcCCCCChhHHhhhhc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLC 386 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~ 386 (445)
|-..++.|++|+||||++.++.
T Consensus 23 g~~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999998765
No 360
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.22 E-value=0.034 Score=51.89 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4577889999999999999999999853
No 361
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=94.21 E-value=0.11 Score=50.09 Aligned_cols=56 Identities=20% Similarity=0.179 Sum_probs=34.7
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee-EEEEECCC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP-VILLDTAG 422 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~-v~l~DTpG 422 (445)
-.++++|++|+||||+++++++..+.. .....+|+....-.+.-.... ..++..++
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g~~~~~-~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~ 83 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGRDFLP-RGSGIVTRRPLILQLINSSTEYAEFLHCKG 83 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhCCCccc-cCCCcccccceEEEccCCCCcceEEEecCC
Confidence 378999999999999999999976432 222335555544333222221 12555655
No 362
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.20 E-value=0.033 Score=54.19 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.8
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.+|-.++++|++|+|||||++++.+
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4677889999999999999999987
No 363
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.14 E-value=0.036 Score=52.34 Aligned_cols=27 Identities=33% Similarity=0.496 Sum_probs=23.2
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|+||+|||||+.++-+-
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 357788999999999999999988653
No 364
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.14 E-value=0.039 Score=48.73 Aligned_cols=28 Identities=29% Similarity=0.512 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4577889999999999999999999853
No 365
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.14 E-value=0.037 Score=51.01 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=24.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4477789999999999999999999853
No 366
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.12 E-value=0.036 Score=51.97 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 25 IRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3577889999999999999999999853
No 367
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.06 E-value=0.038 Score=52.20 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=24.1
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.++|.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 23 VRRGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 347778999999999999999999985
No 368
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.05 E-value=0.038 Score=52.15 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4577889999999999999999998753
No 369
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.03 E-value=0.039 Score=51.69 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4577889999999999999999999853
No 370
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.03 E-value=0.037 Score=51.02 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChhHHhhhhccc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
|..++|+|++|+|||||++.|.+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 456899999999999999999764
No 371
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.01 E-value=0.039 Score=51.65 Aligned_cols=28 Identities=29% Similarity=0.504 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.++|-.
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3477889999999999999999999853
No 372
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.01 E-value=0.039 Score=51.77 Aligned_cols=27 Identities=19% Similarity=0.447 Sum_probs=24.1
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++-
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 447788999999999999999999985
No 373
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.00 E-value=0.039 Score=51.40 Aligned_cols=28 Identities=36% Similarity=0.558 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3477789999999999999999999853
No 374
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.00 E-value=0.039 Score=52.08 Aligned_cols=28 Identities=25% Similarity=0.477 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4577889999999999999999999853
No 375
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.98 E-value=0.042 Score=49.58 Aligned_cols=28 Identities=36% Similarity=0.560 Sum_probs=24.8
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999999999853
No 376
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.96 E-value=0.04 Score=52.77 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3577889999999999999999998753
No 377
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.96 E-value=0.039 Score=52.35 Aligned_cols=28 Identities=29% Similarity=0.528 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3477889999999999999999999854
No 378
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.92 E-value=0.042 Score=51.98 Aligned_cols=28 Identities=32% Similarity=0.394 Sum_probs=24.7
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 28 IKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999999999853
No 379
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.90 E-value=0.043 Score=51.46 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4577889999999999999999999853
No 380
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.87 E-value=0.043 Score=51.71 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3477789999999999999999999853
No 381
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.86 E-value=0.044 Score=51.39 Aligned_cols=28 Identities=29% Similarity=0.567 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3477889999999999999999999853
No 382
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=93.84 E-value=0.044 Score=51.71 Aligned_cols=28 Identities=36% Similarity=0.493 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 28 IGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3477889999999999999999999853
No 383
>KOG0077|consensus
Probab=93.83 E-value=0.056 Score=48.82 Aligned_cols=57 Identities=25% Similarity=0.394 Sum_probs=38.6
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCC
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGL 423 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~ 423 (445)
++.-+++++|--|+|||||++.|-.+.... .. .|.++.+..+.++|..+..+|..|-
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~q--hv--PTlHPTSE~l~Ig~m~ftt~DLGGH 74 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQ--HV--PTLHPTSEELSIGGMTFTTFDLGGH 74 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccc--cC--CCcCCChHHheecCceEEEEccccH
Confidence 344589999999999999999998877643 11 2233334445566666666666663
No 384
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.79 E-value=0.5 Score=46.69 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.5
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
..+..++|+|++||||||++..|..
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567889999999999999988875
No 385
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.79 E-value=0.047 Score=49.88 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=24.1
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++-
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 347788999999999999999999975
No 386
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.79 E-value=0.045 Score=52.08 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=24.7
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999999999754
No 387
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.77 E-value=0.046 Score=51.62 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=24.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3467789999999999999999999853
No 388
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.76 E-value=0.046 Score=50.96 Aligned_cols=27 Identities=33% Similarity=0.568 Sum_probs=23.3
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|+||+|||||+|.+.+-
T Consensus 28 ia~ge~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 28 IASGELVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred ecCCCEEEEEcCCCccHHHHHHHHhcC
Confidence 346778999999999999999998873
No 389
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.73 E-value=0.05 Score=45.83 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=21.4
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
..+-.++++|++|+|||||++.+..
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~~ 37 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELIK 37 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhhC
Confidence 3556789999999999999999773
No 390
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=93.72 E-value=0.048 Score=52.17 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=24.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 23 VKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457888999999999999999999986
No 391
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.72 E-value=0.047 Score=52.13 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3577889999999999999999999753
No 392
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.70 E-value=0.44 Score=49.96 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=20.6
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
..+..++|+|++||||||++..|..
T Consensus 219 ~~~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 219 KQGGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456889999999999999887754
No 393
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=93.69 E-value=0.048 Score=52.99 Aligned_cols=28 Identities=29% Similarity=0.515 Sum_probs=24.7
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578889999999999999999999853
No 394
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.68 E-value=0.048 Score=51.81 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3477789999999999999999999853
No 395
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.67 E-value=0.049 Score=51.04 Aligned_cols=28 Identities=21% Similarity=0.436 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4577889999999999999999999853
No 396
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.66 E-value=0.05 Score=51.87 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=24.1
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++-
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 347778999999999999999999975
No 397
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.66 E-value=0.12 Score=52.37 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=20.6
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
+.+.+.+.|+||+|||||++.+..
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998654
No 398
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.63 E-value=0.049 Score=51.92 Aligned_cols=28 Identities=36% Similarity=0.497 Sum_probs=24.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 32 IGEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3477789999999999999999999853
No 399
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.62 E-value=0.051 Score=50.56 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=24.7
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578899999999999999999999854
No 400
>KOG3886|consensus
Probab=93.61 E-value=0.019 Score=54.50 Aligned_cols=60 Identities=28% Similarity=0.351 Sum_probs=43.6
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC-eeEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG-YPVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g-~~v~l~DTpG~~~ 425 (445)
.+|.+.|.+|+||||+=-.+...-.+.-...+|-|.|+....+.+-| .-+.+||..|+++
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~ 65 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEE 65 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHH
Confidence 57899999999999986655533222113557888899888876655 4555999999984
No 401
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.61 E-value=0.051 Score=50.36 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3477789999999999999999999854
No 402
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=93.58 E-value=0.049 Score=52.60 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=24.0
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++-
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 29 FEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 457788999999999999999999974
No 403
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.58 E-value=0.052 Score=50.71 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=24.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3477889999999999999999999853
No 404
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.57 E-value=0.054 Score=49.65 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4577789999999999999999999864
No 405
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=93.57 E-value=0.06 Score=55.61 Aligned_cols=66 Identities=24% Similarity=0.288 Sum_probs=43.2
Q ss_pred cEEEEEcCCCCChhHHhhhhc--cccc---ee----------eecC------CCccceEEEEEEEECCeeEEEEECCCCC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLC--QKQI---SI----------VTSI------PGTTRDVIEKHLDIGGYPVILLDTAGLR 424 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~--~~~~---~~----------vs~~------~~tt~~~~~~~~~~~g~~v~l~DTpG~~ 424 (445)
-+.+++-.|.+|||||.-+|+ ++.. +. .|+. -|.......-++.+++..+.|.||||-.
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 467999999999999988765 2210 00 1111 1222233344566789999999999999
Q ss_pred cCCCCcc
Q psy1007 425 TTTSDII 431 (445)
Q Consensus 425 ~~~~~~~ 431 (445)
+|+.|..
T Consensus 93 DFSEDTY 99 (528)
T COG4108 93 DFSEDTY 99 (528)
T ss_pred ccchhHH
Confidence 8876643
No 406
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.56 E-value=0.053 Score=51.02 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=24.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 28 VKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3467789999999999999999999853
No 407
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=93.55 E-value=0.053 Score=50.33 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3477889999999999999999999853
No 408
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.54 E-value=0.055 Score=49.51 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=24.3
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++.
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999999999985
No 409
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=93.54 E-value=0.054 Score=51.60 Aligned_cols=28 Identities=25% Similarity=0.248 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 9 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467789999999999999999999854
No 410
>PRK10908 cell division protein FtsE; Provisional
Probab=93.53 E-value=0.054 Score=51.21 Aligned_cols=28 Identities=29% Similarity=0.691 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 25 MRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3577889999999999999999999753
No 411
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.52 E-value=0.055 Score=50.57 Aligned_cols=28 Identities=25% Similarity=0.585 Sum_probs=24.7
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 3477889999999999999999999864
No 412
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.52 E-value=0.054 Score=51.36 Aligned_cols=28 Identities=36% Similarity=0.584 Sum_probs=24.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+..|-.++++|++|+|||||++.+++..
T Consensus 26 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3467789999999999999999999853
No 413
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.48 E-value=0.048 Score=49.64 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChhHHhhhhccc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
..++++|+||+||||+++.|+..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999998654
No 414
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.48 E-value=0.056 Score=50.39 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=24.7
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999999999753
No 415
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.47 E-value=0.057 Score=51.31 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=24.7
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999999999853
No 416
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.47 E-value=0.056 Score=50.64 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=24.8
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999999999854
No 417
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.47 E-value=0.055 Score=51.79 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=24.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 25 IPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3477789999999999999999999853
No 418
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=93.46 E-value=0.055 Score=51.88 Aligned_cols=28 Identities=32% Similarity=0.438 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.++|..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3477889999999999999999999853
No 419
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.45 E-value=0.18 Score=53.61 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=22.4
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
..|..++|+|++||||||++..|+..
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHH
Confidence 35678899999999999999998863
No 420
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=93.44 E-value=0.056 Score=51.29 Aligned_cols=28 Identities=29% Similarity=0.561 Sum_probs=24.7
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 33 VKRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3477889999999999999999999853
No 421
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.44 E-value=0.055 Score=52.12 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.++|..
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 26 IPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3477889999999999999999999753
No 422
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=93.43 E-value=0.056 Score=51.63 Aligned_cols=28 Identities=29% Similarity=0.494 Sum_probs=24.7
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4578899999999999999999999753
No 423
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=93.42 E-value=0.057 Score=51.75 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=24.8
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+.+..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999999999853
No 424
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.42 E-value=0.059 Score=49.17 Aligned_cols=28 Identities=29% Similarity=0.559 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4577889999999999999999999853
No 425
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.38 E-value=0.061 Score=48.89 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3477789999999999999999999853
No 426
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=93.37 E-value=0.058 Score=51.93 Aligned_cols=28 Identities=21% Similarity=0.461 Sum_probs=24.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 26 VKPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3477789999999999999999999753
No 427
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.31 E-value=0.063 Score=50.67 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
++.|-.++++|++|+|||||++.|+|.-
T Consensus 24 ~~pGev~ailGPNGAGKSTlLk~LsGel 51 (259)
T COG4559 24 LRPGEVLAILGPNGAGKSTLLKALSGEL 51 (259)
T ss_pred ccCCcEEEEECCCCccHHHHHHHhhCcc
Confidence 3467788999999999999999999864
No 428
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.29 E-value=0.061 Score=52.03 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4467789999999999999999999854
No 429
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.29 E-value=0.064 Score=44.98 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+..++++|++|+|||+++..++..-
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 3568999999999999999988653
No 430
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.28 E-value=0.062 Score=51.57 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 24 IAKGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3477789999999999999999999853
No 431
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.28 E-value=0.063 Score=50.29 Aligned_cols=28 Identities=32% Similarity=0.526 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3577889999999999999999998753
No 432
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=93.27 E-value=0.064 Score=51.08 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=23.6
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
..|-.++++|++|+|||||++++++-
T Consensus 27 ~~Geiv~llG~NGaGKTTlLkti~Gl 52 (237)
T COG0410 27 ERGEIVALLGRNGAGKTTLLKTIMGL 52 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46778999999999999999999985
No 433
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.27 E-value=0.066 Score=48.44 Aligned_cols=28 Identities=36% Similarity=0.474 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3577889999999999999999999853
No 434
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.24 E-value=0.066 Score=49.92 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=24.2
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++.
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 23 IKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 457788999999999999999999985
No 435
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.24 E-value=0.051 Score=50.97 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=22.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+|..++++|++|+|||||.+.+.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998753
No 436
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.20 E-value=0.065 Score=52.46 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=24.3
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 24 FSLSPVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3467789999999999999999999753
No 437
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=93.20 E-value=0.063 Score=52.19 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 36 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 36 IAKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3578889999999999999999999753
No 438
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.19 E-value=0.059 Score=57.87 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=24.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+++|-+++++|++|+|||||++.+++-
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 358899999999999999999999874
No 439
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=93.19 E-value=0.064 Score=51.78 Aligned_cols=28 Identities=36% Similarity=0.478 Sum_probs=24.7
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 26 LYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578889999999999999999999863
No 440
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=93.18 E-value=0.065 Score=51.67 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=23.8
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++-
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 28 FYPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 347778999999999999999999874
No 441
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.17 E-value=0.064 Score=52.47 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 47 i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 47 VREGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4577889999999999999999999853
No 442
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=93.17 E-value=0.067 Score=52.18 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 34 FPAGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3477889999999999999999999853
No 443
>KOG0076|consensus
Probab=93.16 E-value=0.072 Score=48.48 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=44.2
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcccccee-----eecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISI-----VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~-----vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
..+.++++|.-|+||+|++-++-...... ++.+ .+|.-....++.+++.++.+||.-|+.+
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki-~~tvgLnig~i~v~~~~l~fwdlgGQe~ 81 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKI-TPTVGLNIGTIEVCNAPLSFWDLGGQES 81 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHe-ecccceeecceeeccceeEEEEcCChHH
Confidence 55789999999999999998765432111 1122 2455566677888888999999999874
No 444
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.14 E-value=0.065 Score=51.74 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=24.2
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++-
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 28 VREQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 347788999999999999999999985
No 445
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=93.14 E-value=0.065 Score=50.82 Aligned_cols=28 Identities=25% Similarity=0.506 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 30 VESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 4577889999999999999999999754
No 446
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.14 E-value=0.068 Score=50.35 Aligned_cols=28 Identities=21% Similarity=0.446 Sum_probs=24.7
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3577889999999999999999999853
No 447
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=93.13 E-value=0.067 Score=52.43 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 30 VPGGSIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3477889999999999999999999853
No 448
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.13 E-value=0.065 Score=52.98 Aligned_cols=28 Identities=14% Similarity=0.329 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 34 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 34 FKKNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3477889999999999999999999853
No 449
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.13 E-value=0.068 Score=49.89 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3477789999999999999999999853
No 450
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=93.13 E-value=0.067 Score=52.14 Aligned_cols=28 Identities=32% Similarity=0.533 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 35 IPAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3477889999999999999999999853
No 451
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=93.12 E-value=0.067 Score=50.79 Aligned_cols=27 Identities=30% Similarity=0.550 Sum_probs=24.0
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 347778999999999999999999985
No 452
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.12 E-value=0.066 Score=51.66 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=24.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 27 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 27 IPQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3477789999999999999999999853
No 453
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.11 E-value=0.067 Score=51.55 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=23.8
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++-
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 26 IFKNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 346778999999999999999999974
No 454
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=93.11 E-value=0.066 Score=51.90 Aligned_cols=28 Identities=36% Similarity=0.497 Sum_probs=24.9
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 29 LYPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999999999853
No 455
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.11 E-value=0.068 Score=51.30 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=24.0
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++-
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 346778999999999999999999985
No 456
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.10 E-value=0.067 Score=51.72 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 30 ILKNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4577889999999999999999998753
No 457
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.08 E-value=0.069 Score=50.50 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3577889999999999999999999853
No 458
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.08 E-value=0.069 Score=52.01 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=25.0
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4578899999999999999999999864
No 459
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=93.07 E-value=0.07 Score=51.52 Aligned_cols=28 Identities=25% Similarity=0.533 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 23 VAAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3477889999999999999999999853
No 460
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=93.05 E-value=0.07 Score=50.88 Aligned_cols=28 Identities=29% Similarity=0.511 Sum_probs=24.3
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467789999999999999999999753
No 461
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.05 E-value=0.07 Score=51.09 Aligned_cols=28 Identities=29% Similarity=0.568 Sum_probs=24.7
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 25 VDPGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4577889999999999999999999863
No 462
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=93.03 E-value=0.071 Score=51.32 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 24 IPKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3577889999999999999999998754
No 463
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.02 E-value=0.07 Score=50.41 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=20.2
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLC 386 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~ 386 (445)
.++...+++||||+||||++.+|-
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHH
Confidence 356678999999999999988764
No 464
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=93.02 E-value=0.072 Score=50.18 Aligned_cols=28 Identities=39% Similarity=0.602 Sum_probs=24.7
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 27 IRAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3578889999999999999999999864
No 465
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.01 E-value=0.072 Score=49.78 Aligned_cols=27 Identities=37% Similarity=0.495 Sum_probs=24.1
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++-
T Consensus 31 i~~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 31 VKAGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 347788999999999999999999875
No 466
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=93.00 E-value=0.067 Score=57.08 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=24.4
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
..|.+++++|++|+|||||+|.++|-.
T Consensus 345 ~~g~~talvG~SGaGKSTLl~lL~G~~ 371 (559)
T COG4988 345 KAGQLTALVGASGAGKSTLLNLLLGFL 371 (559)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCcC
Confidence 478899999999999999999999854
No 467
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.00 E-value=0.071 Score=52.39 Aligned_cols=28 Identities=29% Similarity=0.517 Sum_probs=24.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 30 IEDGSYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467789999999999999999999853
No 468
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.99 E-value=0.073 Score=49.26 Aligned_cols=27 Identities=26% Similarity=0.683 Sum_probs=24.0
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 347778999999999999999999974
No 469
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=92.99 E-value=0.072 Score=51.66 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3477889999999999999999999753
No 470
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=92.99 E-value=0.074 Score=50.30 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 31 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 31 VNAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3477889999999999999999999853
No 471
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=92.97 E-value=0.075 Score=50.50 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=24.2
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++-
T Consensus 45 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 45 VPRGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457788999999999999999999974
No 472
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=92.97 E-value=0.07 Score=51.74 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+.+..
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 27 IEPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 3477889999999999999999999854
No 473
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=92.97 E-value=0.04 Score=52.82 Aligned_cols=27 Identities=26% Similarity=0.489 Sum_probs=23.7
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+++|-.++++||+|+||||++|.+++-
T Consensus 27 v~~Gei~~LIGPNGAGKTTlfNlitG~ 53 (250)
T COG0411 27 VRPGEIVGLIGPNGAGKTTLFNLITGF 53 (250)
T ss_pred EcCCeEEEEECCCCCCceeeeeeeccc
Confidence 346778999999999999999999974
No 474
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=92.97 E-value=0.068 Score=52.21 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=24.2
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.++|-
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 68 (267)
T PRK14235 42 IPEKTVTAFIGPSGCGKSTFLRCLNRM 68 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 357888999999999999999999974
No 475
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=92.96 E-value=0.071 Score=52.07 Aligned_cols=28 Identities=36% Similarity=0.545 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 36 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 36 LREGQTLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3477789999999999999999999853
No 476
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=92.95 E-value=0.072 Score=53.10 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=24.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 16 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 16 VREGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3477789999999999999999999853
No 477
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.93 E-value=0.075 Score=50.84 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=22.8
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
+.+|=.|+++|++|+|||||+.++-+
T Consensus 27 I~~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 27 INQGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred eCCCcEEEEECCCCCcHHHHHHHHhc
Confidence 34677899999999999999999876
No 478
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.92 E-value=0.074 Score=52.07 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=24.2
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++-
T Consensus 36 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 36 IPRGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 357888999999999999999999975
No 479
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=92.91 E-value=0.074 Score=50.79 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 26 IPPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred ecCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 3477889999999999999999999853
No 480
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.91 E-value=0.074 Score=51.19 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=24.0
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++-
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 25 IEQNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 347788999999999999999999974
No 481
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.90 E-value=0.073 Score=52.64 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=24.7
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 30 i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~ 57 (287)
T PRK13641 30 LEEGSFVALVGHTGSGKSTLMQHFNALL 57 (287)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4577889999999999999999999853
No 482
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.90 E-value=0.07 Score=51.78 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=23.9
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++.
T Consensus 35 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 35 IPENEVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 347778999999999999999999874
No 483
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=92.89 E-value=0.064 Score=46.54 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=18.2
Q ss_pred EEEEcCCCCChhHHhhhhcc
Q psy1007 368 SVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 368 v~lvG~~~vGKSsLln~l~~ 387 (445)
++++|+||+||||+...+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68899999999999999884
No 484
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=92.88 E-value=0.077 Score=52.14 Aligned_cols=28 Identities=29% Similarity=0.493 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 24 IEPGRVTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4577889999999999999999998753
No 485
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.88 E-value=0.074 Score=52.56 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~ 57 (286)
T PRK13646 30 FEQGKYYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3477889999999999999999999853
No 486
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=92.87 E-value=0.079 Score=50.89 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=24.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 24 VRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 457788999999999999999999986
No 487
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.86 E-value=0.076 Score=50.59 Aligned_cols=28 Identities=36% Similarity=0.541 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.++|-.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 24 IPAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3477889999999999999999999853
No 488
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=92.86 E-value=0.076 Score=51.15 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=23.8
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++-
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 26 IEENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 346778999999999999999999974
No 489
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=92.85 E-value=0.08 Score=51.03 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=24.2
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 30 INKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 457789999999999999999999984
No 490
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.84 E-value=0.077 Score=51.87 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 32 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 32 IPKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3577889999999999999999999853
No 491
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.84 E-value=0.077 Score=51.96 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 32 INEGEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3477889999999999999999999853
No 492
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=92.84 E-value=0.078 Score=50.31 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=24.3
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467789999999999999999999853
No 493
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=92.83 E-value=0.079 Score=50.73 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 44 i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 44 IEKGEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3577889999999999999999999853
No 494
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=92.82 E-value=0.076 Score=52.93 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 27 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 27 IARGECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578889999999999999999999853
No 495
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=92.82 E-value=0.079 Score=49.77 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=25.2
Q ss_pred ccccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 361 RIRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 361 ~~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
.+.+|-.++++|++|+|||||++.+++-.
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 20 NVADGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578899999999999999999999853
No 496
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=92.81 E-value=0.08 Score=51.25 Aligned_cols=27 Identities=22% Similarity=0.508 Sum_probs=24.1
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++-
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (255)
T PRK11231 25 LPTGKITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 347778999999999999999999985
No 497
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=92.80 E-value=0.08 Score=50.67 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=24.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 24 IDQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3477789999999999999999999853
No 498
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.80 E-value=0.075 Score=51.87 Aligned_cols=27 Identities=19% Similarity=0.395 Sum_probs=23.9
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++-
T Consensus 44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 44 IEKHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 347778999999999999999999874
No 499
>PLN02772 guanylate kinase
Probab=92.79 E-value=0.092 Score=54.08 Aligned_cols=53 Identities=28% Similarity=0.320 Sum_probs=34.5
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceee-ecCCCccceEEEEEEEECCeeEEEE
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIV-TSIPGTTRDVIEKHLDIGGYPVILL 418 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~v-s~~~~tt~~~~~~~~~~~g~~v~l~ 418 (445)
....++++|++||||+||+++|....-... ...+.|||..... +.+|....++
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~g--E~dG~dY~Fv 187 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREM--EKDGVHYHFT 187 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCccc--ccCCceEeeC
Confidence 345789999999999999999987532111 2445678776653 3355444443
No 500
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=92.79 E-value=0.08 Score=48.10 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=24.3
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++..
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3467789999999999999999999853
Done!