Query psy1007
Match_columns 445
No_of_seqs 404 out of 3728
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 17:08:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1007.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1007hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gee_A MNME, tRNA modification 100.0 1.2E-66 4.3E-71 545.5 24.5 301 18-443 5-310 (476)
2 3geh_A MNME, tRNA modification 100.0 4.9E-67 1.7E-71 546.6 17.3 298 22-443 2-301 (462)
3 1xzp_A Probable tRNA modificat 100.0 9.9E-58 3.4E-62 478.5 23.3 294 22-443 28-321 (482)
4 3gee_A MNME, tRNA modification 99.5 3E-16 1E-20 164.1 -1.4 169 72-314 64-240 (476)
5 3geh_A MNME, tRNA modification 99.5 7.5E-16 2.6E-20 160.4 -0.7 158 84-314 66-231 (462)
6 1t9h_A YLOQ, probable GTPase E 99.5 1.9E-15 6.5E-20 149.2 -0.9 168 241-442 69-253 (307)
7 1puj_A YLQF, conserved hypothe 99.4 2.1E-12 7.2E-17 126.1 13.3 107 306-427 49-179 (282)
8 3gir_A Aminomethyltransferase; 99.4 1.7E-12 5.7E-17 132.4 12.0 158 31-208 70-259 (393)
9 1vlo_A Aminomethyltransferase; 99.3 2E-12 6.9E-17 131.4 8.8 158 31-209 50-245 (381)
10 2rcn_A Probable GTPase ENGC; Y 99.3 1.7E-12 5.7E-17 130.6 7.2 157 254-443 126-298 (358)
11 3h2y_A GTPase family protein; 99.3 3.4E-12 1.2E-16 129.2 8.2 126 306-438 95-238 (368)
12 3tfi_A GCVT-like aminomethyltr 99.3 4E-12 1.4E-16 128.7 7.8 143 31-189 49-223 (369)
13 1wos_A Aminomethyltransferase; 99.3 1.2E-11 4.1E-16 125.0 10.7 161 32-209 38-236 (364)
14 3ec1_A YQEH GTPase; atnos1, at 99.3 5E-12 1.7E-16 128.0 7.9 115 306-427 97-226 (369)
15 1wsr_A Aminomethyltransferase; 99.2 3.6E-11 1.2E-15 122.0 11.4 161 32-208 43-241 (375)
16 3cnl_A YLQF, putative uncharac 99.2 7.6E-12 2.6E-16 120.8 6.1 106 307-428 46-159 (262)
17 3ttg_A Putative aminomethyltra 99.2 2.1E-11 7E-16 122.8 9.2 157 32-209 31-230 (355)
18 1yx2_A Aminomethyltransferase; 99.2 2.4E-11 8.2E-16 122.8 9.7 162 32-209 42-240 (365)
19 2yv5_A YJEQ protein; hydrolase 99.2 2.7E-11 9.2E-16 119.3 9.0 109 305-428 108-231 (302)
20 2gj8_A MNME, tRNA modification 99.2 5.6E-11 1.9E-15 106.5 9.5 77 364-441 3-79 (172)
21 2hjg_A GTP-binding protein ENG 99.2 1.9E-11 6.4E-16 126.4 6.0 121 305-439 109-251 (436)
22 2qtf_A Protein HFLX, GTP-bindi 99.2 2.7E-10 9.4E-15 115.0 14.2 63 361-424 174-237 (364)
23 2gag_A Heterotetrameric sarcos 99.1 1.9E-10 6.4E-15 130.0 9.8 166 29-208 616-824 (965)
24 4dcu_A GTP-binding protein ENG 99.1 2.1E-10 7.2E-15 119.2 8.8 77 364-440 194-272 (456)
25 1mky_A Probable GTP-binding pr 99.0 2.1E-10 7.1E-15 118.6 7.9 60 366-425 181-240 (439)
26 1v5v_A Aminomethyltransferase; 99.0 3.1E-10 1.1E-14 116.1 8.7 161 32-208 42-259 (401)
27 1pj5_A N,N-dimethylglycine oxi 99.0 4.1E-10 1.4E-14 125.2 8.9 165 29-208 492-698 (830)
28 1mky_A Probable GTP-binding pr 99.0 4.4E-10 1.5E-14 116.1 7.5 60 367-426 3-62 (439)
29 1wf3_A GTP-binding protein; GT 99.0 1.1E-09 3.8E-14 107.7 9.5 61 366-426 8-68 (301)
30 2wji_A Ferrous iron transport 98.9 1.8E-09 6.1E-14 95.6 8.1 61 366-427 4-64 (165)
31 1xzp_A Probable tRNA modificat 98.9 1.5E-10 5.3E-15 120.9 1.2 155 86-314 88-250 (482)
32 2wjg_A FEOB, ferrous iron tran 98.9 3.5E-09 1.2E-13 95.1 8.3 62 365-427 7-68 (188)
33 1vly_A SPOT PR51, unknown prot 98.9 7.5E-09 2.6E-13 103.4 11.3 138 39-201 36-202 (338)
34 3i8s_A Ferrous iron transport 98.9 3E-09 1E-13 103.0 8.2 62 365-427 3-64 (274)
35 1u0l_A Probable GTPase ENGC; p 98.9 5.6E-09 1.9E-13 102.5 10.0 122 306-442 114-250 (301)
36 3iby_A Ferrous iron transport 98.9 6.7E-09 2.3E-13 99.7 9.9 62 366-428 2-63 (256)
37 3a1s_A Iron(II) transport prot 98.9 7E-09 2.4E-13 99.6 9.8 64 365-429 5-68 (258)
38 3lxw_A GTPase IMAP family memb 98.8 2.9E-09 1E-13 101.5 7.0 62 364-425 20-82 (247)
39 3k53_A Ferrous iron transport 98.8 5.1E-09 1.8E-13 100.9 8.8 65 365-430 3-67 (271)
40 3def_A T7I23.11 protein; chlor 98.8 3E-09 1E-13 102.1 6.8 64 364-427 35-98 (262)
41 4a9a_A Ribosome-interacting GT 98.8 2.2E-09 7.5E-14 108.6 5.7 63 363-426 69-132 (376)
42 3iev_A GTP-binding protein ERA 98.8 7.8E-09 2.7E-13 101.8 9.4 62 366-427 11-73 (308)
43 3lxx_A GTPase IMAP family memb 98.8 8.8E-09 3E-13 97.1 8.4 63 364-427 28-92 (239)
44 1h65_A Chloroplast outer envel 98.8 5.3E-09 1.8E-13 100.8 6.9 63 364-426 38-100 (270)
45 2dyk_A GTP-binding protein; GT 98.8 4.2E-09 1.4E-13 91.7 5.5 61 366-426 2-62 (161)
46 2xtp_A GTPase IMAP family memb 98.8 9.7E-09 3.3E-13 98.0 7.1 64 364-427 21-85 (260)
47 2lkc_A Translation initiation 98.8 5E-09 1.7E-13 92.9 4.7 62 364-426 7-68 (178)
48 4dhe_A Probable GTP-binding pr 98.7 7.9E-09 2.7E-13 95.6 6.1 64 364-427 28-93 (223)
49 3b1v_A Ferrous iron uptake tra 98.7 7.7E-09 2.6E-13 100.2 6.1 63 365-429 3-65 (272)
50 2qu8_A Putative nucleolar GTP- 98.7 1.6E-08 5.3E-13 94.5 8.0 62 364-426 28-89 (228)
51 2hjg_A GTP-binding protein ENG 98.7 3.4E-09 1.2E-13 109.4 3.6 60 366-425 4-63 (436)
52 1ega_A Protein (GTP-binding pr 98.7 9.9E-09 3.4E-13 100.8 6.7 59 366-424 9-67 (301)
53 3tw8_B RAS-related protein RAB 98.7 2.6E-08 8.8E-13 88.2 7.4 62 364-426 8-71 (181)
54 3cph_A RAS-related protein SEC 98.7 2.3E-08 7.8E-13 91.5 6.7 66 360-426 15-82 (213)
55 2g6b_A RAS-related protein RAB 98.7 3.1E-08 1.1E-12 87.9 7.3 63 364-426 9-73 (180)
56 1kao_A RAP2A; GTP-binding prot 98.7 3.8E-08 1.3E-12 85.7 7.6 59 365-425 3-63 (167)
57 4dkx_A RAS-related protein RAB 98.7 1.7E-08 5.8E-13 94.4 5.6 62 364-426 12-75 (216)
58 2j69_A Bacterial dynamin-like 98.7 2.3E-08 7.9E-13 109.0 7.2 36 364-399 68-103 (695)
59 4dcu_A GTP-binding protein ENG 98.6 1.2E-08 4.1E-13 105.9 4.0 60 365-424 23-82 (456)
60 3t5d_A Septin-7; GTP-binding p 98.6 5.3E-08 1.8E-12 94.0 8.0 61 366-426 9-78 (274)
61 4dsu_A GTPase KRAS, isoform 2B 98.6 6.2E-08 2.1E-12 86.5 7.7 60 365-426 4-65 (189)
62 1upt_A ARL1, ADP-ribosylation 98.6 5.7E-08 1.9E-12 85.3 7.3 60 362-425 4-63 (171)
63 2hxs_A RAB-26, RAS-related pro 98.6 3.4E-08 1.2E-12 87.5 5.7 61 365-426 6-69 (178)
64 1wms_A RAB-9, RAB9, RAS-relate 98.6 5.5E-08 1.9E-12 86.0 7.0 60 365-425 7-68 (177)
65 2bov_A RAla, RAS-related prote 98.6 6.6E-08 2.3E-12 87.8 7.6 60 364-425 13-74 (206)
66 2y8e_A RAB-protein 6, GH09086P 98.6 5.4E-08 1.8E-12 86.0 6.8 61 365-426 14-76 (179)
67 1svi_A GTP-binding protein YSX 98.6 6.2E-08 2.1E-12 87.3 7.2 61 364-427 22-83 (195)
68 3clv_A RAB5 protein, putative; 98.6 5.6E-08 1.9E-12 87.4 6.9 48 364-412 6-53 (208)
69 3tkl_A RAS-related protein RAB 98.6 6E-08 2.1E-12 87.4 7.1 62 364-426 15-78 (196)
70 3t5g_A GTP-binding protein RHE 98.6 8.3E-08 2.8E-12 85.4 7.7 60 365-426 6-67 (181)
71 1jal_A YCHF protein; nucleotid 98.6 2.3E-08 8E-13 100.6 4.4 61 365-426 2-79 (363)
72 2bme_A RAB4A, RAS-related prot 98.6 5.9E-08 2E-12 86.6 6.5 61 364-425 9-71 (186)
73 2q3h_A RAS homolog gene family 98.6 8.7E-08 3E-12 87.0 7.7 63 362-426 17-81 (201)
74 3pqc_A Probable GTP-binding pr 98.6 8.5E-08 2.9E-12 86.0 7.5 61 364-427 22-82 (195)
75 1z08_A RAS-related protein RAB 98.6 6.2E-08 2.1E-12 85.0 6.5 60 365-425 6-67 (170)
76 1z2a_A RAS-related protein RAB 98.6 7E-08 2.4E-12 84.3 6.6 61 365-426 5-67 (168)
77 2h57_A ADP-ribosylation factor 98.6 8E-08 2.7E-12 86.6 7.2 63 362-426 18-80 (190)
78 3q85_A GTP-binding protein REM 98.6 6.9E-08 2.3E-12 84.7 6.5 60 366-426 3-64 (169)
79 3r7w_A Gtpase1, GTP-binding pr 98.6 4.9E-08 1.7E-12 96.0 6.1 62 365-426 3-65 (307)
80 1g16_A RAS-related protein SEC 98.6 4.7E-08 1.6E-12 85.6 5.4 61 365-426 3-65 (170)
81 3cbq_A GTP-binding protein REM 98.6 7.3E-08 2.5E-12 87.8 6.8 61 364-425 22-84 (195)
82 2fn4_A P23, RAS-related protei 98.6 9.9E-08 3.4E-12 84.4 7.5 61 364-426 8-70 (181)
83 2fu5_C RAS-related protein RAB 98.6 2.9E-08 1E-12 88.5 3.9 62 364-426 7-70 (183)
84 1u8z_A RAS-related protein RAL 98.6 1E-07 3.5E-12 82.9 7.3 59 365-425 4-64 (168)
85 2nzj_A GTP-binding protein REM 98.5 3.8E-08 1.3E-12 86.7 4.3 59 365-425 4-64 (175)
86 2il1_A RAB12; G-protein, GDP, 98.5 9.8E-08 3.3E-12 86.4 7.1 61 364-425 25-87 (192)
87 2bcg_Y Protein YP2, GTP-bindin 98.5 9.4E-08 3.2E-12 87.2 7.0 61 365-426 8-70 (206)
88 1c1y_A RAS-related protein RAP 98.5 9E-08 3.1E-12 83.5 6.5 60 365-426 3-64 (167)
89 2iwr_A Centaurin gamma 1; ANK 98.5 8.2E-08 2.8E-12 85.2 6.4 59 364-425 6-66 (178)
90 3q72_A GTP-binding protein RAD 98.5 9.2E-08 3.2E-12 83.6 6.6 59 365-426 2-62 (166)
91 1ek0_A Protein (GTP-binding pr 98.5 9.6E-08 3.3E-12 83.4 6.6 61 365-426 3-65 (170)
92 2e87_A Hypothetical protein PH 98.5 2.5E-07 8.4E-12 92.8 10.5 64 364-428 166-229 (357)
93 2gag_C Heterotetrameric sarcos 98.5 6.8E-08 2.3E-12 90.0 5.8 129 39-197 37-203 (210)
94 2cjw_A GTP-binding protein GEM 98.5 6.9E-08 2.4E-12 87.8 5.8 61 365-425 6-68 (192)
95 1fzq_A ADP-ribosylation factor 98.5 1.5E-07 5E-12 84.5 7.8 58 364-425 15-72 (181)
96 2a9k_A RAS-related protein RAL 98.5 1.5E-07 5.2E-12 83.6 7.8 60 364-425 17-78 (187)
97 1mh1_A RAC1; GTP-binding, GTPa 98.5 9.9E-08 3.4E-12 84.9 6.4 61 364-426 4-66 (186)
98 3c5c_A RAS-like protein 12; GD 98.5 1.4E-07 4.7E-12 85.1 7.4 61 364-426 20-82 (187)
99 2ce2_X GTPase HRAS; signaling 98.5 1.8E-07 6.1E-12 81.1 7.7 60 365-426 3-64 (166)
100 1ksh_A ARF-like protein 2; sma 98.5 1.7E-07 5.8E-12 83.9 7.7 59 363-425 16-74 (186)
101 1z06_A RAS-related protein RAB 98.5 1.5E-07 5E-12 84.8 7.1 62 364-426 19-82 (189)
102 1vg8_A RAS-related protein RAB 98.5 1.1E-07 3.8E-12 86.5 6.4 62 364-426 7-70 (207)
103 3reg_A RHO-like small GTPase; 98.5 1.3E-07 4.6E-12 85.4 6.8 62 363-426 21-84 (194)
104 4gzl_A RAS-related C3 botulinu 98.5 1.1E-07 3.8E-12 87.1 6.4 61 364-426 29-91 (204)
105 3l0i_B RAS-related protein RAB 98.5 5.7E-08 1.9E-12 88.4 4.3 62 364-426 32-95 (199)
106 2a5j_A RAS-related protein RAB 98.5 1.2E-07 4E-12 85.7 6.3 63 363-426 19-83 (191)
107 2b6h_A ADP-ribosylation factor 98.5 2.3E-07 7.9E-12 84.1 8.3 60 363-426 27-86 (192)
108 2h17_A ADP-ribosylation factor 98.5 1.5E-07 5.1E-12 84.2 6.9 61 362-426 18-78 (181)
109 2x77_A ADP-ribosylation factor 98.5 1.5E-07 5.3E-12 84.5 7.0 59 364-426 21-79 (189)
110 2g3y_A GTP-binding protein GEM 98.5 1.1E-07 3.9E-12 88.4 6.3 61 364-424 36-98 (211)
111 3con_A GTPase NRAS; structural 98.5 1.5E-07 5.2E-12 84.5 7.0 60 364-425 20-81 (190)
112 2ohf_A Protein OLA1, GTP-bindi 98.5 4.9E-08 1.7E-12 99.2 4.0 65 361-426 18-99 (396)
113 2ew1_A RAS-related protein RAB 98.5 1.3E-07 4.5E-12 86.8 6.6 61 364-425 25-87 (201)
114 1r8s_A ADP-ribosylation factor 98.5 8.1E-08 2.8E-12 83.8 4.9 56 366-425 1-56 (164)
115 3cpj_B GTP-binding protein YPT 98.5 1.3E-07 4.4E-12 87.8 6.5 62 364-426 12-75 (223)
116 2erx_A GTP-binding protein DI- 98.5 2.5E-07 8.4E-12 81.0 7.9 59 365-425 3-63 (172)
117 1f6b_A SAR1; gtpases, N-termin 98.5 1.3E-07 4.3E-12 86.4 6.2 59 364-426 24-82 (198)
118 1wxq_A GTP-binding protein; st 98.5 6.4E-08 2.2E-12 98.7 4.6 59 366-425 1-83 (397)
119 1moz_A ARL1, ADP-ribosylation 98.5 1.6E-07 5.6E-12 83.5 6.8 59 364-426 17-75 (183)
120 1m2o_B GTP-binding protein SAR 98.5 1.6E-07 5.6E-12 85.0 6.8 59 364-426 22-80 (190)
121 2oil_A CATX-8, RAS-related pro 98.5 1.8E-07 6.2E-12 84.3 7.1 63 363-426 23-87 (193)
122 4bas_A ADP-ribosylation factor 98.5 1.9E-07 6.4E-12 84.3 7.2 61 364-426 16-76 (199)
123 1zd9_A ADP-ribosylation factor 98.5 1.7E-07 5.7E-12 84.5 6.7 62 361-425 18-79 (188)
124 3kkq_A RAS-related protein M-R 98.5 2.3E-07 7.8E-12 82.7 7.5 61 364-426 17-79 (183)
125 1zj6_A ADP-ribosylation factor 98.5 1.5E-07 5E-12 84.6 6.2 59 364-426 15-73 (187)
126 2hup_A RAS-related protein RAB 98.5 1.3E-07 4.3E-12 86.5 5.8 62 363-425 27-90 (201)
127 1z0f_A RAB14, member RAS oncog 98.5 2.1E-07 7.3E-12 82.0 7.1 62 364-426 14-77 (179)
128 2gf9_A RAS-related protein RAB 98.5 2.7E-07 9.2E-12 83.0 7.9 62 364-426 21-84 (189)
129 1r2q_A RAS-related protein RAB 98.5 1.9E-07 6.4E-12 81.6 6.6 61 365-426 6-68 (170)
130 2atx_A Small GTP binding prote 98.5 1.6E-07 5.5E-12 84.7 6.4 61 364-426 17-79 (194)
131 2aka_B Dynamin-1; fusion prote 98.5 3.9E-07 1.3E-11 88.2 9.5 28 364-391 25-52 (299)
132 1z0j_A RAB-22, RAS-related pro 98.5 1.9E-07 6.4E-12 81.7 6.6 60 365-425 6-67 (170)
133 3qq5_A Small GTP-binding prote 98.5 8.7E-08 3E-12 98.5 5.0 64 364-427 33-97 (423)
134 2f9l_A RAB11B, member RAS onco 98.5 2.1E-07 7E-12 84.8 7.0 61 365-426 5-67 (199)
135 3oes_A GTPase rhebl1; small GT 98.5 1.4E-07 4.8E-12 85.9 5.7 63 362-426 21-85 (201)
136 2efe_B Small GTP-binding prote 98.5 2E-07 6.8E-12 82.7 6.6 62 364-426 11-74 (181)
137 3bc1_A RAS-related protein RAB 98.5 1.7E-07 6E-12 83.7 6.2 61 364-425 10-82 (195)
138 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 7.1E-08 2.4E-12 98.1 4.0 65 361-425 16-97 (392)
139 1oix_A RAS-related protein RAB 98.5 2.5E-07 8.7E-12 83.9 7.2 62 364-426 28-91 (191)
140 1x3s_A RAS-related protein RAB 98.5 2.2E-07 7.6E-12 83.4 6.7 62 364-426 14-77 (195)
141 3ihw_A Centg3; RAS, centaurin, 98.5 2.4E-07 8.4E-12 83.4 7.0 59 364-425 19-79 (184)
142 1zbd_A Rabphilin-3A; G protein 98.4 2.6E-07 9E-12 83.9 7.2 60 365-425 8-69 (203)
143 2o52_A RAS-related protein RAB 98.4 1.9E-07 6.4E-12 85.2 6.2 62 363-425 23-86 (200)
144 1ky3_A GTP-binding protein YPT 98.4 1.2E-07 4E-12 84.0 4.5 61 364-425 7-70 (182)
145 2j1l_A RHO-related GTP-binding 98.4 2.4E-07 8.4E-12 85.4 6.8 61 364-426 33-95 (214)
146 2p5s_A RAS and EF-hand domain 98.4 2.5E-07 8.4E-12 84.2 6.7 61 364-425 27-89 (199)
147 2atv_A RERG, RAS-like estrogen 98.4 3.7E-07 1.3E-11 82.6 7.9 60 364-425 27-88 (196)
148 2fv8_A H6, RHO-related GTP-bin 98.4 2.8E-07 9.6E-12 84.4 7.0 60 365-426 25-86 (207)
149 2j0v_A RAC-like GTP-binding pr 98.4 2.3E-07 7.9E-12 85.0 6.2 61 364-426 8-70 (212)
150 2fh5_B SR-beta, signal recogni 98.4 2.8E-07 9.5E-12 84.6 6.5 58 364-425 6-66 (214)
151 2fg5_A RAB-22B, RAS-related pr 98.4 1.3E-07 4.4E-12 85.5 4.2 62 363-426 21-85 (192)
152 1m7b_A RND3/RHOE small GTP-bin 98.4 2.8E-07 9.6E-12 82.6 6.3 60 365-426 7-68 (184)
153 2cxx_A Probable GTP-binding pr 98.4 1.6E-07 5.4E-12 84.0 4.7 55 366-425 2-56 (190)
154 1pui_A ENGB, probable GTP-bind 98.4 5E-07 1.7E-11 82.5 7.5 62 361-425 22-84 (210)
155 2gf0_A GTP-binding protein DI- 98.4 5.2E-07 1.8E-11 81.3 7.2 60 364-425 7-68 (199)
156 3q3j_B RHO-related GTP-binding 98.4 3.7E-07 1.3E-11 84.3 6.2 62 363-426 25-88 (214)
157 3bwd_D RAC-like GTP-binding pr 98.4 9.2E-08 3.1E-12 84.9 1.9 61 364-426 7-69 (182)
158 2gco_A H9, RHO-related GTP-bin 98.3 4.3E-07 1.5E-11 82.7 5.9 61 364-426 24-86 (201)
159 1gwn_A RHO-related GTP-binding 98.3 4.7E-07 1.6E-11 83.3 6.1 61 364-426 27-89 (205)
160 1x31_C Sarcosine oxidase gamma 98.3 6.1E-07 2.1E-11 83.3 6.7 121 39-189 35-190 (206)
161 2zej_A Dardarin, leucine-rich 98.3 3E-07 1E-11 82.6 4.5 60 366-425 3-68 (184)
162 2yc2_C IFT27, small RAB-relate 98.3 1.8E-07 6.2E-12 84.9 2.9 60 364-425 19-85 (208)
163 4djt_A GTP-binding nuclear pro 98.3 5.7E-07 1.9E-11 82.7 6.1 63 364-427 10-75 (218)
164 2ged_A SR-beta, signal recogni 98.3 2.6E-07 9E-12 83.1 3.7 58 363-427 46-105 (193)
165 3gj0_A GTP-binding nuclear pro 98.3 2.8E-07 9.5E-12 85.2 3.8 61 364-426 14-77 (221)
166 3th5_A RAS-related C3 botulinu 97.6 9.8E-08 3.4E-12 87.1 0.0 61 364-426 29-91 (204)
167 1lnz_A SPO0B-associated GTP-bi 98.3 2.7E-07 9.3E-12 92.2 3.2 59 366-425 159-218 (342)
168 2wkq_A NPH1-1, RAS-related C3 98.3 1.1E-06 3.7E-11 86.0 7.4 62 363-426 153-216 (332)
169 3o47_A ADP-ribosylation factor 98.3 1.3E-06 4.3E-11 86.7 7.9 61 363-427 163-223 (329)
170 2f7s_A C25KG, RAS-related prot 98.3 4.6E-07 1.6E-11 83.3 4.4 60 364-424 24-95 (217)
171 3llu_A RAS-related GTP-binding 98.2 1E-06 3.6E-11 79.8 5.2 63 364-426 19-82 (196)
172 1jwy_B Dynamin A GTPase domain 98.2 4.5E-06 1.5E-10 81.5 10.0 27 364-390 23-49 (315)
173 2dby_A GTP-binding protein; GD 98.2 6E-07 2.1E-11 90.6 3.7 60 366-426 2-82 (368)
174 1f5n_A Interferon-induced guan 98.2 8.6E-07 2.9E-11 94.5 5.0 60 365-426 38-104 (592)
175 3lvq_E ARF-GAP with SH3 domain 98.2 1.3E-06 4.4E-11 91.2 6.1 59 364-426 321-379 (497)
176 2x2e_A Dynamin-1; nitration, h 98.2 2.3E-06 7.8E-11 85.6 7.6 28 364-391 30-57 (353)
177 3dz8_A RAS-related protein RAB 98.2 4.4E-07 1.5E-11 81.8 1.7 62 363-425 21-84 (191)
178 3j2k_7 ERF3, eukaryotic polype 98.1 1.5E-06 5.2E-11 89.7 5.2 64 363-426 15-108 (439)
179 1nrj_B SR-beta, signal recogni 98.1 9.5E-07 3.2E-11 81.2 2.8 56 364-426 11-68 (218)
180 3izq_1 HBS1P, elongation facto 98.1 1.5E-06 5E-11 93.5 3.5 63 363-425 165-257 (611)
181 3p26_A Elongation factor 1 alp 98.0 1.9E-06 6.5E-11 89.9 3.6 63 364-426 32-124 (483)
182 3t1o_A Gliding protein MGLA; G 98.0 1.4E-06 4.9E-11 77.9 1.8 26 364-389 13-38 (198)
183 1udx_A The GTP-binding protein 98.0 6.3E-06 2.2E-10 84.4 6.3 63 362-425 154-217 (416)
184 3izy_P Translation initiation 98.0 6.3E-07 2.1E-11 94.7 -1.6 63 364-427 3-66 (537)
185 3mca_A HBS1, elongation factor 97.9 1.2E-06 4.3E-11 93.7 0.3 63 364-426 176-268 (592)
186 2qag_A Septin-2, protein NEDD5 97.9 4.5E-06 1.5E-10 83.9 4.1 59 366-424 38-106 (361)
187 3r7w_B Gtpase2, GTP-binding pr 97.9 5.1E-06 1.8E-10 82.3 4.4 60 367-427 1-60 (331)
188 3tr5_A RF-3, peptide chain rel 97.9 3.3E-06 1.1E-10 89.1 2.5 63 365-427 13-96 (528)
189 3t34_A Dynamin-related protein 97.9 2.5E-05 8.5E-10 78.1 8.7 25 366-390 35-59 (360)
190 2elf_A Protein translation elo 97.9 6.8E-06 2.3E-10 82.9 4.4 51 367-426 23-73 (370)
191 2qpt_A EH domain-containing pr 97.8 1.6E-05 5.6E-10 84.2 6.5 38 364-401 64-103 (550)
192 1f60_A Elongation factor EEF1A 97.8 4.1E-06 1.4E-10 86.9 1.7 61 365-425 7-97 (458)
193 2www_A Methylmalonic aciduria 97.8 2.6E-06 8.9E-11 85.3 -0.2 24 364-387 73-96 (349)
194 1zun_B Sulfate adenylate trans 97.8 1.6E-05 5.4E-10 81.8 5.6 63 364-426 23-117 (434)
195 1zo1_I IF2, translation initia 97.8 2.5E-06 8.6E-11 89.3 -0.5 63 364-427 3-65 (501)
196 2c78_A Elongation factor TU-A; 97.8 8.7E-06 3E-10 82.9 3.3 63 364-426 10-88 (405)
197 3dpu_A RAB family protein; roc 97.8 8.8E-06 3E-10 85.9 3.1 62 364-426 40-111 (535)
198 1jny_A EF-1-alpha, elongation 97.7 7.5E-06 2.6E-10 84.3 1.5 62 365-426 6-97 (435)
199 2h5e_A Peptide chain release f 97.7 2.1E-05 7.3E-10 82.9 4.9 64 364-427 12-96 (529)
200 1wb1_A Translation elongation 97.7 1.6E-05 5.5E-10 82.9 3.5 62 364-425 18-85 (482)
201 1d2e_A Elongation factor TU (E 97.7 3.1E-05 1E-09 78.7 5.0 62 364-425 2-78 (397)
202 1r5b_A Eukaryotic peptide chai 97.6 1.9E-05 6.4E-10 82.1 2.0 64 364-427 42-135 (467)
203 2xex_A Elongation factor G; GT 97.5 4.7E-05 1.6E-09 82.9 4.8 62 365-426 10-88 (693)
204 2qag_C Septin-7; cell cycle, c 97.5 5.7E-05 2E-09 77.3 5.1 61 366-426 32-101 (418)
205 2qnr_A Septin-2, protein NEDD5 97.5 3.6E-05 1.2E-09 75.3 3.4 60 365-424 18-87 (301)
206 2qm8_A GTPase/ATPase; G protei 97.5 4.7E-05 1.6E-09 75.7 3.9 25 363-387 53-77 (337)
207 2p67_A LAO/AO transport system 97.4 8E-05 2.7E-09 74.0 4.4 25 363-387 54-78 (341)
208 3q5d_A Atlastin-1; G protein, 97.4 9E-05 3.1E-09 76.4 4.0 59 366-425 68-152 (447)
209 1dar_A EF-G, elongation factor 97.4 0.00013 4.5E-09 79.4 5.4 63 364-426 11-90 (691)
210 1kk1_A EIF2gamma; initiation o 97.3 0.00019 6.4E-09 73.1 5.9 62 364-425 9-95 (410)
211 3sjy_A Translation initiation 97.3 4.1E-05 1.4E-09 77.8 0.9 25 364-388 7-31 (403)
212 1g7s_A Translation initiation 97.3 0.00013 4.4E-09 78.0 4.1 61 365-427 5-84 (594)
213 3zvr_A Dynamin-1; hydrolase, D 97.3 0.00054 1.9E-08 74.9 8.8 27 364-390 50-76 (772)
214 1s0u_A EIF-2-gamma, translatio 97.2 0.00032 1.1E-08 71.3 5.9 62 364-425 7-93 (408)
215 2dy1_A Elongation factor G; tr 97.2 0.00031 1E-08 76.1 6.0 64 363-426 7-87 (665)
216 2rdo_7 EF-G, elongation factor 97.2 0.00036 1.2E-08 76.1 6.1 63 364-426 9-95 (704)
217 1n0u_A EF-2, elongation factor 97.2 0.00019 6.3E-09 79.9 3.9 23 366-388 20-42 (842)
218 3avx_A Elongation factor TS, e 97.1 0.00011 3.9E-09 83.1 1.8 63 364-426 295-372 (1289)
219 3cb4_D GTP-binding protein LEP 97.1 0.00024 8.2E-09 76.0 4.0 61 366-426 5-84 (599)
220 3c5h_A Glucocorticoid receptor 97.1 5.8E-05 2E-09 71.7 -0.9 27 362-388 16-51 (255)
221 3p32_A Probable GTPase RV1496/ 97.1 9.5E-05 3.3E-09 73.9 0.5 24 364-387 78-101 (355)
222 3sop_A Neuronal-specific septi 97.0 0.00027 9.2E-09 68.0 3.4 25 366-390 3-27 (270)
223 2ywe_A GTP-binding protein LEP 97.0 0.00026 8.8E-09 75.7 3.3 61 366-426 7-86 (600)
224 2qag_B Septin-6, protein NEDD5 97.0 0.00066 2.3E-08 69.5 6.1 63 363-425 38-107 (427)
225 2wsm_A Hydrogenase expression/ 96.9 0.00045 1.5E-08 63.2 3.0 24 365-388 30-53 (221)
226 3ney_A 55 kDa erythrocyte memb 96.7 0.00011 3.7E-09 67.5 -2.6 60 362-423 16-76 (197)
227 3e70_C DPA, signal recognition 96.7 0.0014 4.7E-08 64.8 5.1 26 363-388 127-152 (328)
228 1tq4_A IIGP1, interferon-induc 96.6 0.0012 4.1E-08 67.3 4.3 59 364-424 68-131 (413)
229 2hf9_A Probable hydrogenase ni 96.5 0.0025 8.5E-08 58.4 5.1 24 365-388 38-61 (226)
230 2j37_W Signal recognition part 96.3 0.0066 2.3E-07 63.4 7.8 31 364-394 100-136 (504)
231 1yrb_A ATP(GTP)binding protein 96.2 0.00067 2.3E-08 63.9 -0.4 35 363-397 12-51 (262)
232 3vqt_A RF-3, peptide chain rel 96.0 0.0048 1.7E-07 65.2 4.6 63 366-428 32-115 (548)
233 3dm5_A SRP54, signal recogniti 95.8 0.025 8.7E-07 58.0 8.9 24 364-387 99-122 (443)
234 1lvg_A Guanylate kinase, GMP k 95.6 0.004 1.4E-07 56.6 1.9 25 364-388 3-27 (198)
235 1kgd_A CASK, peripheral plasma 95.5 0.0052 1.8E-07 54.8 2.5 25 364-388 4-28 (180)
236 1znw_A Guanylate kinase, GMP k 95.3 0.0068 2.3E-07 55.2 2.5 29 360-388 15-43 (207)
237 1z6g_A Guanylate kinase; struc 95.2 0.007 2.4E-07 55.8 2.2 26 363-388 21-46 (218)
238 1zp6_A Hypothetical protein AT 95.1 0.0093 3.2E-07 53.0 2.7 27 362-388 6-32 (191)
239 3tr0_A Guanylate kinase, GMP k 95.0 0.0095 3.3E-07 53.5 2.5 25 364-388 6-30 (205)
240 1ye8_A Protein THEP1, hypothet 94.9 0.0095 3.3E-07 53.3 2.3 22 367-388 2-23 (178)
241 1s96_A Guanylate kinase, GMP k 94.9 0.01 3.4E-07 55.1 2.5 28 362-389 13-40 (219)
242 3tif_A Uncharacterized ABC tra 94.9 0.013 4.3E-07 55.0 3.1 28 362-389 28-55 (235)
243 3tau_A Guanylate kinase, GMP k 94.9 0.013 4.5E-07 53.4 3.1 26 364-389 7-32 (208)
244 2pcj_A ABC transporter, lipopr 94.8 0.013 4.4E-07 54.5 2.9 28 362-389 27-54 (224)
245 1ex7_A Guanylate kinase; subst 94.8 0.011 3.8E-07 53.5 2.3 21 368-388 4-24 (186)
246 3c8u_A Fructokinase; YP_612366 94.7 0.012 4.1E-07 53.6 2.4 27 362-388 19-45 (208)
247 4gp7_A Metallophosphoesterase; 94.7 0.015 5.3E-07 51.2 3.0 25 363-387 7-31 (171)
248 2cbz_A Multidrug resistance-as 94.7 0.015 5.3E-07 54.4 3.1 28 362-389 28-55 (237)
249 3a00_A Guanylate kinase, GMP k 94.6 0.012 4.1E-07 52.6 2.0 22 367-388 3-24 (186)
250 1b0u_A Histidine permease; ABC 94.6 0.016 5.6E-07 55.1 3.1 28 362-389 29-56 (262)
251 2v3c_C SRP54, signal recogniti 94.6 0.0062 2.1E-07 62.4 0.1 23 365-387 99-121 (432)
252 1g6h_A High-affinity branched- 94.6 0.017 5.6E-07 54.9 3.0 28 362-389 30-57 (257)
253 2ff7_A Alpha-hemolysin translo 94.6 0.017 5.7E-07 54.6 3.0 28 362-389 32-59 (247)
254 3gfo_A Cobalt import ATP-bindi 94.6 0.017 5.7E-07 55.6 3.0 28 362-389 31-58 (275)
255 2pze_A Cystic fibrosis transme 94.5 0.017 5.9E-07 53.8 3.0 28 362-389 31-58 (229)
256 1mv5_A LMRA, multidrug resista 94.5 0.017 5.8E-07 54.3 2.9 27 362-388 25-51 (243)
257 1sgw_A Putative ABC transporte 94.5 0.016 5.4E-07 53.6 2.7 28 362-389 32-59 (214)
258 4g1u_C Hemin import ATP-bindin 94.5 0.018 6E-07 55.1 3.0 28 362-389 34-61 (266)
259 2j41_A Guanylate kinase; GMP, 94.4 0.016 5.6E-07 52.0 2.6 27 363-389 4-30 (207)
260 1ji0_A ABC transporter; ATP bi 94.4 0.019 6.4E-07 53.9 3.0 28 362-389 29-56 (240)
261 2olj_A Amino acid ABC transpor 94.4 0.019 6.5E-07 54.8 3.1 28 362-389 47-74 (263)
262 2ghi_A Transport protein; mult 94.4 0.02 6.7E-07 54.5 3.1 27 362-388 43-69 (260)
263 1htw_A HI0065; nucleotide-bind 94.4 0.017 5.9E-07 50.7 2.5 27 363-389 31-57 (158)
264 2qi9_C Vitamin B12 import ATP- 94.4 0.02 6.8E-07 54.2 3.0 28 362-389 23-50 (249)
265 3b9q_A Chloroplast SRP recepto 94.3 0.16 5.5E-06 49.3 9.6 27 362-388 97-123 (302)
266 1vpl_A ABC transporter, ATP-bi 94.3 0.02 7E-07 54.3 3.1 28 362-389 38-65 (256)
267 2ixe_A Antigen peptide transpo 94.3 0.02 7E-07 54.7 3.1 28 362-389 42-69 (271)
268 2ihy_A ABC transporter, ATP-bi 94.3 0.02 7E-07 55.0 3.0 28 362-389 44-71 (279)
269 2d2e_A SUFC protein; ABC-ATPas 94.3 0.02 6.9E-07 54.0 2.8 27 362-388 26-52 (250)
270 2zu0_C Probable ATP-dependent 94.2 0.021 7.1E-07 54.5 2.9 27 362-388 43-69 (267)
271 3lnc_A Guanylate kinase, GMP k 94.2 0.017 5.7E-07 53.4 2.0 27 362-388 24-51 (231)
272 3fvq_A Fe(3+) IONS import ATP- 94.1 0.045 1.5E-06 54.6 5.2 28 362-389 27-54 (359)
273 2yz2_A Putative ABC transporte 94.1 0.024 8.2E-07 54.0 3.1 28 362-389 30-57 (266)
274 3szr_A Interferon-induced GTP- 94.1 0.036 1.2E-06 59.2 4.8 23 367-389 47-69 (608)
275 2nq2_C Hypothetical ABC transp 94.1 0.023 8E-07 53.8 3.0 28 362-389 28-55 (253)
276 2yhs_A FTSY, cell division pro 94.1 0.22 7.7E-06 51.6 10.4 27 362-388 290-316 (503)
277 3asz_A Uridine kinase; cytidin 94.0 0.021 7E-07 51.7 2.3 25 364-388 5-29 (211)
278 2v9p_A Replication protein E1; 93.9 0.023 8E-07 55.4 2.5 27 362-388 123-149 (305)
279 2qor_A Guanylate kinase; phosp 93.9 0.024 8.1E-07 51.3 2.4 26 363-388 10-35 (204)
280 3nh6_A ATP-binding cassette SU 93.9 0.02 6.9E-07 55.9 2.0 27 362-388 77-103 (306)
281 4ido_A Atlastin-1; GTPase, GTP 93.8 0.056 1.9E-06 55.5 5.3 21 366-386 68-88 (457)
282 3b85_A Phosphate starvation-in 93.8 0.023 7.8E-07 52.2 2.2 26 363-388 20-45 (208)
283 2eyu_A Twitching motility prot 93.7 0.026 9E-07 53.7 2.5 27 362-388 22-48 (261)
284 2og2_A Putative signal recogni 93.7 0.24 8.2E-06 49.3 9.6 26 363-388 155-180 (359)
285 2bbs_A Cystic fibrosis transme 93.7 0.03 1E-06 54.1 3.0 28 362-389 61-88 (290)
286 4eun_A Thermoresistant glucoki 93.6 0.029 1E-06 50.5 2.5 24 364-387 28-51 (200)
287 4a74_A DNA repair and recombin 93.6 0.028 9.6E-07 51.1 2.4 27 361-387 21-47 (231)
288 2onk_A Molybdate/tungstate ABC 93.5 0.03 1E-06 52.6 2.5 24 366-389 25-48 (240)
289 3ec2_A DNA replication protein 93.4 0.066 2.3E-06 47.1 4.5 25 364-388 37-61 (180)
290 2ehv_A Hypothetical protein PH 93.4 0.035 1.2E-06 51.2 2.8 26 361-386 26-51 (251)
291 1kag_A SKI, shikimate kinase I 93.4 0.029 1E-06 48.8 2.0 24 365-388 4-27 (173)
292 3j25_A Tetracycline resistance 93.3 0.013 4.4E-07 63.0 -0.5 61 367-427 4-81 (638)
293 2pjz_A Hypothetical protein ST 93.3 0.04 1.4E-06 52.5 3.0 27 362-389 28-54 (263)
294 3aez_A Pantothenate kinase; tr 93.3 0.034 1.1E-06 54.4 2.4 27 362-388 87-113 (312)
295 2bdt_A BH3686; alpha-beta prot 93.2 0.031 1E-06 49.7 1.9 22 366-387 3-24 (189)
296 3tui_C Methionine import ATP-b 93.2 0.039 1.3E-06 55.2 2.9 27 363-389 52-78 (366)
297 2i3b_A HCR-ntpase, human cance 93.2 0.032 1.1E-06 50.4 2.0 23 366-388 2-24 (189)
298 2jeo_A Uridine-cytidine kinase 93.1 0.037 1.3E-06 51.6 2.5 26 363-388 23-48 (245)
299 3uie_A Adenylyl-sulfate kinase 93.1 0.037 1.3E-06 49.8 2.4 26 363-388 23-48 (200)
300 1knq_A Gluconate kinase; ALFA/ 93.1 0.039 1.3E-06 48.3 2.4 24 364-387 7-30 (175)
301 1z47_A CYSA, putative ABC-tran 93.1 0.042 1.4E-06 54.8 2.8 27 363-389 39-65 (355)
302 1oxx_K GLCV, glucose, ABC tran 93.1 0.057 2E-06 53.7 3.8 28 362-389 28-55 (353)
303 2yyz_A Sugar ABC transporter, 93.0 0.044 1.5E-06 54.7 2.9 28 362-389 26-53 (359)
304 3rlf_A Maltose/maltodextrin im 93.0 0.044 1.5E-06 55.1 2.9 28 362-389 26-53 (381)
305 2it1_A 362AA long hypothetical 92.9 0.046 1.6E-06 54.6 2.9 28 362-389 26-53 (362)
306 1v43_A Sugar-binding transport 92.8 0.049 1.7E-06 54.6 2.9 28 362-389 34-61 (372)
307 1g29_1 MALK, maltose transport 92.8 0.049 1.7E-06 54.6 2.8 28 362-389 26-53 (372)
308 2bbw_A Adenylate kinase 4, AK4 92.8 0.051 1.7E-06 50.6 2.8 23 364-386 26-48 (246)
309 2gza_A Type IV secretion syste 92.7 0.039 1.3E-06 55.0 2.0 26 363-388 173-198 (361)
310 3vaa_A Shikimate kinase, SK; s 92.5 0.053 1.8E-06 48.7 2.5 25 363-387 23-47 (199)
311 3d31_A Sulfate/molybdate ABC t 92.4 0.041 1.4E-06 54.6 1.8 28 362-389 23-50 (348)
312 3gd7_A Fusion complex of cysti 92.4 0.056 1.9E-06 54.5 2.8 27 362-388 44-70 (390)
313 2pt7_A CAG-ALFA; ATPase, prote 92.4 0.047 1.6E-06 53.7 2.1 26 363-388 169-194 (330)
314 2qt1_A Nicotinamide riboside k 92.3 0.063 2.2E-06 48.4 2.7 28 361-388 17-44 (207)
315 2vp4_A Deoxynucleoside kinase; 92.3 0.069 2.4E-06 49.3 3.0 26 363-388 18-43 (230)
316 1ko7_A HPR kinase/phosphatase; 92.3 0.086 3E-06 51.6 3.8 25 364-388 143-167 (314)
317 1rj9_A FTSY, signal recognitio 92.1 0.061 2.1E-06 52.4 2.5 24 364-387 101-124 (304)
318 2kjq_A DNAA-related protein; s 92.1 0.061 2.1E-06 46.4 2.3 25 364-388 35-59 (149)
319 1gvn_B Zeta; postsegregational 92.0 0.19 6.5E-06 48.2 5.9 24 364-387 32-55 (287)
320 1kht_A Adenylate kinase; phosp 92.0 0.073 2.5E-06 46.8 2.8 23 365-387 3-25 (192)
321 1qhx_A CPT, protein (chloramph 92.0 0.079 2.7E-06 46.2 2.9 23 365-387 3-25 (178)
322 1cke_A CK, MSSA, protein (cyti 91.9 0.066 2.3E-06 48.7 2.4 24 365-388 5-28 (227)
323 4fn5_A EF-G 1, elongation fact 91.9 0.13 4.6E-06 55.8 5.1 61 367-427 15-99 (709)
324 3kb2_A SPBC2 prophage-derived 91.7 0.078 2.7E-06 45.8 2.6 22 367-388 3-24 (173)
325 2w0m_A SSO2452; RECA, SSPF, un 91.7 0.077 2.6E-06 48.0 2.6 27 361-387 19-45 (235)
326 3cm0_A Adenylate kinase; ATP-b 91.6 0.07 2.4E-06 46.9 2.2 24 364-387 3-26 (186)
327 1lw7_A Transcriptional regulat 91.6 0.061 2.1E-06 53.4 2.0 24 365-388 170-193 (365)
328 1sq5_A Pantothenate kinase; P- 91.6 0.069 2.4E-06 51.8 2.3 25 363-387 78-102 (308)
329 3lw7_A Adenylate kinase relate 91.6 0.086 2.9E-06 45.3 2.6 19 367-385 3-21 (179)
330 2rhm_A Putative kinase; P-loop 91.6 0.089 3.1E-06 46.4 2.8 24 364-387 4-27 (193)
331 2ewv_A Twitching motility prot 91.5 0.075 2.6E-06 53.2 2.4 26 363-388 134-159 (372)
332 4e22_A Cytidylate kinase; P-lo 91.5 0.09 3.1E-06 49.4 2.8 24 363-386 25-48 (252)
333 2v54_A DTMP kinase, thymidylat 91.3 0.1 3.6E-06 46.5 3.0 25 364-388 3-27 (204)
334 2f1r_A Molybdopterin-guanine d 91.3 0.043 1.5E-06 48.8 0.4 22 367-388 4-25 (171)
335 1np6_A Molybdopterin-guanine d 91.2 0.078 2.7E-06 47.2 2.0 23 366-388 7-29 (174)
336 2yl4_A ATP-binding cassette SU 91.2 0.095 3.2E-06 55.7 3.0 26 363-388 368-393 (595)
337 2obl_A ESCN; ATPase, hydrolase 91.2 0.085 2.9E-06 52.3 2.4 28 362-389 68-95 (347)
338 3b60_A Lipid A export ATP-bind 91.2 0.095 3.3E-06 55.5 3.0 26 363-388 367-392 (582)
339 3t61_A Gluconokinase; PSI-biol 91.1 0.081 2.8E-06 47.5 2.1 24 365-388 18-41 (202)
340 1rz3_A Hypothetical protein rb 91.1 0.087 3E-06 47.5 2.3 25 363-387 20-44 (201)
341 1ly1_A Polynucleotide kinase; 91.1 0.096 3.3E-06 45.5 2.5 22 366-387 3-24 (181)
342 2oap_1 GSPE-2, type II secreti 91.1 0.082 2.8E-06 55.2 2.3 26 363-388 258-283 (511)
343 4a82_A Cystic fibrosis transme 91.0 0.099 3.4E-06 55.3 3.0 26 363-388 365-390 (578)
344 1yqt_A RNAse L inhibitor; ATP- 91.0 0.099 3.4E-06 55.0 2.9 28 362-389 44-71 (538)
345 2if2_A Dephospho-COA kinase; a 91.0 0.088 3E-06 47.2 2.2 22 366-387 2-23 (204)
346 2plr_A DTMP kinase, probable t 91.0 0.11 3.7E-06 46.5 2.7 24 364-387 3-26 (213)
347 1cr0_A DNA primase/helicase; R 90.9 0.1 3.4E-06 49.9 2.6 28 361-388 31-58 (296)
348 1jjv_A Dephospho-COA kinase; P 90.9 0.1 3.4E-06 46.9 2.5 22 366-387 3-24 (206)
349 3jvv_A Twitching mobility prot 90.9 0.093 3.2E-06 52.2 2.4 25 364-388 122-146 (356)
350 3qf4_B Uncharacterized ABC tra 90.8 0.11 3.8E-06 55.2 3.1 26 363-388 379-404 (598)
351 3b5x_A Lipid A export ATP-bind 90.8 0.1 3.6E-06 55.2 2.8 26 363-388 367-392 (582)
352 1y63_A LMAJ004144AAA protein; 90.8 0.13 4.3E-06 45.7 2.9 25 364-388 9-33 (184)
353 2pez_A Bifunctional 3'-phospho 90.7 0.11 3.6E-06 45.7 2.4 24 364-387 4-27 (179)
354 2cvh_A DNA repair and recombin 90.6 0.12 4.1E-06 46.5 2.7 27 361-387 16-42 (220)
355 1aky_A Adenylate kinase; ATP:A 90.5 0.12 4.2E-06 47.0 2.7 24 364-387 3-26 (220)
356 3qf4_A ABC transporter, ATP-bi 90.5 0.12 4.2E-06 54.8 3.1 26 363-388 367-392 (587)
357 2wwf_A Thymidilate kinase, put 90.5 0.13 4.6E-06 46.0 2.9 24 364-387 9-32 (212)
358 2jaq_A Deoxyguanosine kinase; 90.5 0.11 3.7E-06 46.2 2.3 21 367-387 2-22 (205)
359 1nn5_A Similar to deoxythymidy 90.5 0.13 4.5E-06 46.1 2.9 25 363-387 7-31 (215)
360 2npi_A Protein CLP1; CLP1-PCF1 90.4 0.098 3.3E-06 53.9 2.2 26 363-388 136-161 (460)
361 3kta_A Chromosome segregation 90.4 0.13 4.4E-06 45.1 2.7 23 364-387 26-48 (182)
362 3ozx_A RNAse L inhibitor; ATP 90.4 0.12 4.2E-06 54.2 2.9 27 363-389 23-49 (538)
363 3trf_A Shikimate kinase, SK; a 90.3 0.13 4.5E-06 45.2 2.7 23 365-387 5-27 (185)
364 2dpy_A FLII, flagellum-specifi 90.3 0.11 3.9E-06 53.1 2.6 28 362-389 154-181 (438)
365 2yvu_A Probable adenylyl-sulfa 90.3 0.12 4E-06 45.7 2.4 26 363-388 11-36 (186)
366 1n0w_A DNA repair protein RAD5 90.3 0.12 4.2E-06 47.2 2.5 27 361-387 20-46 (243)
367 1nks_A Adenylate kinase; therm 90.2 0.12 4.1E-06 45.4 2.3 21 367-387 3-23 (194)
368 3j16_B RLI1P; ribosome recycli 90.2 0.13 4.4E-06 54.9 2.9 28 362-389 100-127 (608)
369 2p5t_B PEZT; postsegregational 90.2 0.24 8.1E-06 46.4 4.4 25 363-387 30-54 (253)
370 2c95_A Adenylate kinase 1; tra 90.0 0.14 4.9E-06 45.1 2.7 24 364-387 8-31 (196)
371 3bk7_A ABC transporter ATP-bin 90.0 0.14 4.9E-06 54.6 3.1 28 362-389 114-141 (607)
372 1ixz_A ATP-dependent metallopr 89.9 0.11 3.9E-06 48.3 2.0 21 368-388 52-72 (254)
373 1tev_A UMP-CMP kinase; ploop, 89.9 0.14 4.9E-06 44.9 2.5 23 365-387 3-25 (196)
374 1odf_A YGR205W, hypothetical 3 89.9 0.13 4.4E-06 49.6 2.4 24 364-387 30-53 (290)
375 2x8a_A Nuclear valosin-contain 89.9 0.11 3.9E-06 49.4 2.0 21 368-388 47-67 (274)
376 3fb4_A Adenylate kinase; psych 89.8 0.15 5.3E-06 46.0 2.7 21 367-387 2-22 (216)
377 3tqc_A Pantothenate kinase; bi 89.6 0.14 4.6E-06 50.3 2.4 24 364-387 91-114 (321)
378 2cdn_A Adenylate kinase; phosp 89.6 0.17 6E-06 45.2 2.9 24 364-387 19-42 (201)
379 1zd8_A GTP:AMP phosphotransfer 89.5 0.16 5.3E-06 46.6 2.5 24 364-387 6-29 (227)
380 3iij_A Coilin-interacting nucl 89.5 0.16 5.5E-06 44.5 2.6 24 364-387 10-33 (180)
381 1p9r_A General secretion pathw 89.5 0.14 4.9E-06 52.0 2.4 25 364-388 166-190 (418)
382 3dl0_A Adenylate kinase; phosp 89.5 0.17 5.7E-06 45.8 2.7 21 367-387 2-22 (216)
383 3ozx_A RNAse L inhibitor; ATP 89.4 0.17 5.7E-06 53.2 3.0 27 363-389 292-318 (538)
384 1jbk_A CLPB protein; beta barr 89.2 0.19 6.5E-06 43.4 2.7 24 365-388 43-66 (195)
385 1zak_A Adenylate kinase; ATP:A 89.1 0.16 5.5E-06 46.2 2.3 24 364-387 4-27 (222)
386 4eaq_A DTMP kinase, thymidylat 89.1 0.17 5.8E-06 46.9 2.4 26 363-388 24-49 (229)
387 2vli_A Antibiotic resistance p 89.0 0.17 5.7E-06 44.2 2.2 24 364-387 4-27 (183)
388 3nwj_A ATSK2; P loop, shikimat 88.9 0.16 5.4E-06 47.9 2.1 23 365-387 48-70 (250)
389 1m7g_A Adenylylsulfate kinase; 88.9 0.18 6.2E-06 45.6 2.5 25 363-387 23-47 (211)
390 3tlx_A Adenylate kinase 2; str 88.8 0.19 6.4E-06 46.9 2.6 24 364-387 28-51 (243)
391 1nij_A Hypothetical protein YJ 88.7 0.15 5.2E-06 49.6 2.0 22 367-388 6-27 (318)
392 3qf7_A RAD50; ABC-ATPase, ATPa 88.7 0.66 2.2E-05 46.0 6.6 22 364-386 23-44 (365)
393 1yqt_A RNAse L inhibitor; ATP- 88.7 0.19 6.6E-06 52.7 2.8 27 363-389 310-336 (538)
394 2bwj_A Adenylate kinase 5; pho 88.6 0.2 7E-06 44.3 2.6 25 364-388 11-35 (199)
395 1iy2_A ATP-dependent metallopr 88.5 0.16 5.6E-06 48.0 2.0 21 368-388 76-96 (278)
396 3be4_A Adenylate kinase; malar 88.5 0.21 7E-06 45.5 2.6 24 364-387 4-27 (217)
397 1p5z_B DCK, deoxycytidine kina 88.5 0.22 7.5E-06 46.8 2.8 27 362-388 21-47 (263)
398 1in4_A RUVB, holliday junction 88.5 0.16 5.6E-06 49.6 2.0 22 367-388 53-74 (334)
399 1vht_A Dephospho-COA kinase; s 88.2 0.23 8E-06 44.9 2.8 23 365-387 4-26 (218)
400 4f4c_A Multidrug resistance pr 88.2 0.2 6.7E-06 58.3 2.7 25 363-387 1103-1127(1321)
401 3bk7_A ABC transporter ATP-bin 88.1 0.22 7.5E-06 53.1 2.8 27 363-389 380-406 (607)
402 1via_A Shikimate kinase; struc 88.1 0.2 6.7E-06 43.7 2.1 21 367-387 6-26 (175)
403 3euj_A Chromosome partition pr 87.9 0.2 6.7E-06 52.0 2.2 22 366-387 30-51 (483)
404 2qmh_A HPR kinase/phosphorylas 87.8 0.35 1.2E-05 44.2 3.6 25 364-388 33-57 (205)
405 1e4v_A Adenylate kinase; trans 87.8 0.23 7.9E-06 44.9 2.5 21 367-387 2-22 (214)
406 1svm_A Large T antigen; AAA+ f 87.8 0.23 8E-06 49.7 2.6 27 362-388 166-192 (377)
407 2z0h_A DTMP kinase, thymidylat 87.7 0.26 8.9E-06 43.4 2.7 22 367-388 2-23 (197)
408 3kl4_A SRP54, signal recogniti 87.6 3.4 0.00012 42.0 11.2 23 364-386 96-118 (433)
409 2pt5_A Shikimate kinase, SK; a 87.6 0.27 9.2E-06 42.3 2.7 21 367-387 2-22 (168)
410 1gtv_A TMK, thymidylate kinase 87.5 0.12 4.2E-06 46.4 0.4 22 367-388 2-23 (214)
411 1nlf_A Regulatory protein REPA 87.5 0.24 8.1E-06 46.9 2.4 27 361-387 26-52 (279)
412 1ukz_A Uridylate kinase; trans 87.5 0.26 9E-06 43.9 2.6 24 364-387 14-37 (203)
413 2px0_A Flagellar biosynthesis 87.4 0.25 8.4E-06 47.8 2.4 24 364-387 104-127 (296)
414 1uf9_A TT1252 protein; P-loop, 87.3 0.26 9E-06 43.7 2.5 25 364-388 7-31 (203)
415 3a4m_A L-seryl-tRNA(SEC) kinas 87.3 0.28 9.5E-06 46.1 2.7 23 365-387 4-26 (260)
416 2pbr_A DTMP kinase, thymidylat 87.3 0.28 9.7E-06 43.0 2.7 21 367-387 2-22 (195)
417 3bos_A Putative DNA replicatio 87.2 0.29 9.9E-06 44.3 2.8 24 365-388 52-75 (242)
418 3cr8_A Sulfate adenylyltranfer 87.1 0.18 6.3E-06 53.1 1.5 27 362-388 366-392 (552)
419 1q3t_A Cytidylate kinase; nucl 87.0 0.28 9.6E-06 45.2 2.6 28 360-387 11-38 (236)
420 1qf9_A UMP/CMP kinase, protein 87.0 0.29 1E-05 42.8 2.6 22 366-387 7-28 (194)
421 2ze6_A Isopentenyl transferase 87.0 0.23 8E-06 46.6 2.0 22 367-388 3-24 (253)
422 3umf_A Adenylate kinase; rossm 86.9 0.3 1E-05 45.0 2.7 28 360-387 24-51 (217)
423 1ak2_A Adenylate kinase isoenz 86.9 0.3 1E-05 44.9 2.7 24 364-387 15-38 (233)
424 1f2t_A RAD50 ABC-ATPase; DNA d 86.8 0.28 9.5E-06 42.2 2.2 20 367-386 25-44 (149)
425 2p65_A Hypothetical protein PF 86.7 0.25 8.5E-06 42.7 1.9 24 365-388 43-66 (187)
426 3ux8_A Excinuclease ABC, A sub 86.7 0.28 9.5E-06 52.8 2.6 24 363-386 346-369 (670)
427 2xb4_A Adenylate kinase; ATP-b 86.5 0.3 1E-05 44.6 2.5 21 367-387 2-22 (223)
428 2dr3_A UPF0273 protein PH0284; 86.5 0.32 1.1E-05 44.4 2.7 27 361-387 19-45 (247)
429 1xjc_A MOBB protein homolog; s 86.4 0.3 1E-05 43.3 2.3 23 366-388 5-27 (169)
430 2iyv_A Shikimate kinase, SK; t 86.3 0.31 1.1E-05 42.7 2.3 22 366-387 3-24 (184)
431 1e6c_A Shikimate kinase; phosp 86.3 0.31 1.1E-05 42.0 2.3 22 366-387 3-24 (173)
432 1lv7_A FTSH; alpha/beta domain 86.2 0.27 9.1E-06 45.8 2.0 23 366-388 46-68 (257)
433 1uj2_A Uridine-cytidine kinase 86.2 0.35 1.2E-05 45.0 2.8 24 364-387 21-44 (252)
434 4aby_A DNA repair protein RECN 86.2 0.15 5.1E-06 51.1 0.2 24 362-386 58-81 (415)
435 3r20_A Cytidylate kinase; stru 86.1 0.36 1.2E-05 45.0 2.8 24 364-387 8-31 (233)
436 3sr0_A Adenylate kinase; phosp 86.0 0.34 1.2E-05 44.2 2.5 21 367-387 2-22 (206)
437 4f4c_A Multidrug resistance pr 85.9 0.33 1.1E-05 56.4 2.9 26 363-388 442-467 (1321)
438 2w58_A DNAI, primosome compone 85.7 0.38 1.3E-05 42.8 2.7 23 366-388 55-77 (202)
439 2iw3_A Elongation factor 3A; a 85.7 0.34 1.2E-05 54.4 2.7 27 363-389 459-485 (986)
440 3g5u_A MCG1178, multidrug resi 85.6 0.37 1.3E-05 55.9 3.1 26 363-388 414-439 (1284)
441 3j16_B RLI1P; ribosome recycli 85.5 0.37 1.3E-05 51.4 2.8 24 366-389 379-402 (608)
442 2iw3_A Elongation factor 3A; a 85.1 0.26 8.8E-06 55.4 1.4 26 363-388 697-722 (986)
443 1vma_A Cell division protein F 84.8 0.38 1.3E-05 46.7 2.4 25 363-387 102-126 (306)
444 3h4m_A Proteasome-activating n 84.7 0.43 1.5E-05 44.9 2.6 25 364-388 50-74 (285)
445 1pzn_A RAD51, DNA repair and r 84.7 0.39 1.3E-05 47.4 2.4 28 361-388 127-154 (349)
446 1zuh_A Shikimate kinase; alpha 84.5 0.47 1.6E-05 40.9 2.6 22 366-387 8-29 (168)
447 3n70_A Transport activator; si 84.5 0.47 1.6E-05 40.1 2.6 25 364-388 23-47 (145)
448 2chg_A Replication factor C sm 84.3 0.42 1.4E-05 42.2 2.2 21 367-387 40-60 (226)
449 3cf0_A Transitional endoplasmi 84.3 0.45 1.5E-05 45.6 2.6 26 363-388 47-72 (301)
450 1njg_A DNA polymerase III subu 84.2 0.42 1.4E-05 42.7 2.2 22 367-388 47-68 (250)
451 3b9p_A CG5977-PA, isoform A; A 84.1 0.44 1.5E-05 45.1 2.4 25 364-388 53-77 (297)
452 3a8t_A Adenylate isopentenyltr 83.9 0.52 1.8E-05 46.5 2.8 26 364-389 39-64 (339)
453 3tqf_A HPR(Ser) kinase; transf 83.7 0.66 2.3E-05 41.4 3.2 25 364-388 15-39 (181)
454 3co5_A Putative two-component 83.6 0.51 1.7E-05 39.9 2.4 24 365-388 27-50 (143)
455 1sky_E F1-ATPase, F1-ATP synth 83.6 0.46 1.6E-05 49.0 2.4 25 364-388 150-174 (473)
456 3syl_A Protein CBBX; photosynt 83.2 0.55 1.9E-05 44.7 2.7 24 364-387 66-89 (309)
457 2qz4_A Paraplegin; AAA+, SPG7, 83.1 0.55 1.9E-05 43.3 2.6 25 364-388 38-62 (262)
458 2f6r_A COA synthase, bifunctio 82.8 0.57 1.9E-05 44.6 2.6 23 364-386 74-96 (281)
459 2qby_A CDC6 homolog 1, cell di 82.7 0.47 1.6E-05 46.1 2.1 24 365-388 45-68 (386)
460 1sxj_E Activator 1 40 kDa subu 82.6 0.47 1.6E-05 46.1 2.0 20 368-387 39-58 (354)
461 3qks_A DNA double-strand break 82.6 0.54 1.8E-05 42.5 2.2 20 367-386 25-44 (203)
462 3v9p_A DTMP kinase, thymidylat 82.5 0.54 1.8E-05 43.6 2.2 26 363-388 23-48 (227)
463 1tf7_A KAIC; homohexamer, hexa 82.4 0.53 1.8E-05 49.0 2.4 25 361-385 35-59 (525)
464 3t15_A Ribulose bisphosphate c 82.3 0.63 2.2E-05 44.5 2.7 25 364-388 35-59 (293)
465 1ltq_A Polynucleotide kinase; 82.2 0.59 2E-05 44.4 2.5 22 366-387 3-24 (301)
466 3lda_A DNA repair protein RAD5 82.2 0.61 2.1E-05 47.0 2.7 26 361-386 174-199 (400)
467 1e69_A Chromosome segregation 82.2 0.62 2.1E-05 45.2 2.6 23 363-386 23-45 (322)
468 3g5u_A MCG1178, multidrug resi 82.1 0.62 2.1E-05 54.0 3.0 26 363-388 1057-1082(1284)
469 2ocp_A DGK, deoxyguanosine kin 82.0 0.63 2.2E-05 42.9 2.5 24 365-388 2-25 (241)
470 1fnn_A CDC6P, cell division co 81.9 0.61 2.1E-05 45.6 2.5 22 367-388 46-67 (389)
471 1zcb_A G alpha I/13; GTP-bindi 81.7 0.69 2.4E-05 46.0 2.8 24 362-385 30-53 (362)
472 3m6a_A ATP-dependent protease 81.6 0.61 2.1E-05 48.9 2.5 25 364-388 107-131 (543)
473 1l8q_A Chromosomal replication 81.5 0.54 1.9E-05 45.3 2.0 24 365-388 37-60 (324)
474 4edh_A DTMP kinase, thymidylat 81.4 0.75 2.6E-05 42.0 2.8 24 364-387 5-28 (213)
475 3exa_A TRNA delta(2)-isopenten 81.3 0.66 2.3E-05 45.3 2.4 23 366-388 4-26 (322)
476 1bif_A 6-phosphofructo-2-kinas 81.2 0.67 2.3E-05 47.5 2.6 25 364-388 38-62 (469)
477 1ofh_A ATP-dependent HSL prote 81.0 0.67 2.3E-05 43.8 2.4 23 365-387 50-72 (310)
478 3ake_A Cytidylate kinase; CMP 80.9 0.68 2.3E-05 41.1 2.2 21 367-387 4-24 (208)
479 1a7j_A Phosphoribulokinase; tr 80.8 0.62 2.1E-05 44.7 2.1 24 364-387 4-27 (290)
480 1tf7_A KAIC; homohexamer, hexa 80.5 0.7 2.4E-05 48.1 2.5 27 362-388 278-304 (525)
481 3zvl_A Bifunctional polynucleo 80.3 0.87 3E-05 46.0 3.0 25 364-388 257-281 (416)
482 2qgz_A Helicase loader, putati 80.2 0.83 2.8E-05 44.1 2.8 23 365-387 152-174 (308)
483 4fcw_A Chaperone protein CLPB; 80.1 0.7 2.4E-05 43.9 2.2 23 366-388 48-70 (311)
484 2grj_A Dephospho-COA kinase; T 80.0 0.84 2.9E-05 41.0 2.6 24 365-388 12-35 (192)
485 1sxj_C Activator 1 40 kDa subu 79.8 0.67 2.3E-05 45.1 2.0 21 368-388 49-69 (340)
486 2o5v_A DNA replication and rep 79.7 0.78 2.7E-05 45.6 2.4 24 363-387 25-48 (359)
487 1zu4_A FTSY; GTPase, signal re 79.6 0.79 2.7E-05 44.7 2.4 25 363-387 103-127 (320)
488 1qhl_A Protein (cell division 79.6 0.22 7.6E-06 46.3 -1.5 21 368-388 30-50 (227)
489 1d2n_A N-ethylmaleimide-sensit 79.6 0.83 2.8E-05 42.8 2.5 23 366-388 65-87 (272)
490 3t5g_A GTP-binding protein RHE 79.3 2.5 8.4E-05 36.2 5.3 66 305-380 109-180 (181)
491 3lv8_A DTMP kinase, thymidylat 79.3 0.92 3.2E-05 42.2 2.6 25 364-388 26-50 (236)
492 3tmk_A Thymidylate kinase; pho 79.2 0.92 3.2E-05 41.6 2.6 25 364-388 4-28 (216)
493 1j8m_F SRP54, signal recogniti 79.0 0.84 2.9E-05 44.0 2.3 23 365-387 98-120 (297)
494 4ag6_A VIRB4 ATPase, type IV s 78.9 1.1 3.8E-05 44.5 3.3 25 364-388 34-58 (392)
495 2h92_A Cytidylate kinase; ross 78.9 0.91 3.1E-05 40.8 2.4 23 365-387 3-25 (219)
496 4tmk_A Protein (thymidylate ki 78.8 0.98 3.4E-05 41.3 2.6 25 364-388 2-26 (213)
497 3crm_A TRNA delta(2)-isopenten 78.7 0.89 3E-05 44.5 2.4 23 366-388 6-28 (323)
498 2zts_A Putative uncharacterize 78.7 1.2 4E-05 40.5 3.2 26 361-386 26-51 (251)
499 3uk6_A RUVB-like 2; hexameric 78.7 0.92 3.2E-05 44.2 2.6 24 365-388 70-93 (368)
500 1x3s_A RAS-related protein RAB 78.4 0.54 1.8E-05 40.9 0.7 46 306-362 120-165 (195)
No 1
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=100.00 E-value=1.2e-66 Score=545.46 Aligned_cols=301 Identities=34% Similarity=0.507 Sum_probs=219.4
Q ss_pred ecCCCCCCC-CCcEEEEccCCCCceEEEEEEecccHHHHHHHhcCCC--CC--CCCCCceeEEeeeecCCCCceecceEE
Q psy1007 18 SRRCSHLAI-KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYP--DQ--KVPKPRYASLRNIVDPVSKVVLDEGLC 92 (445)
Q Consensus 18 ~~~~~~~~~-~dtI~A~at~~g~~ai~viRiSG~~a~~i~~~l~~~~--~~--~~~~~~~~~~~~~~d~~~g~~iD~~i~ 92 (445)
|+.++|+.. +|||+|+|||+|+|||||||||||+|.++++++|+.. .. ..+
T Consensus 5 ~~~~~~~~~~~dtI~Aiat~~g~~~i~iiRiSG~~a~~i~~~~~~~~~~~~~~~~~------------------------ 60 (476)
T 3gee_A 5 SPSDLHLPVPGHPIAAIATPVGVGALAIVRISGAGVLDLADRVFRKVHGSGKLAEA------------------------ 60 (476)
T ss_dssp -------CCCCCCEEEECSCSSCCSEEEEEEESTTHHHHHHHHEEESSSCCCGGGC------------------------
T ss_pred CcccccCCCCCCCEEEeCCCCcCcEEEEEEeechhHHHHHHHHhCcccccccccCC------------------------
Confidence 445555553 6999999999999999999999999999999999721 00 112
Q ss_pred EeecccccCcceEeeccCCChHHHhhhhccCCCCCCCCCeEEEeeeeecCCCCeeecCceeeecCCCCCcCCCceeEEEe
Q psy1007 93 LWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQV 172 (445)
Q Consensus 93 ~~~~~~~~~giavIrisGp~a~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~~f~~p~syTGEd~~Ei~~ 172 (445)
.||+++++.++|. +++||+++++||++|+||||||++||||
T Consensus 61 -------------------------------------~~~~~~~~~~~~~--~~~iD~~l~~~f~~P~s~TgEd~~E~~~ 101 (476)
T 3gee_A 61 -------------------------------------AGYTAHFGRLYDG--EEMVDEVIALVFRAPRSFTAEQMVEFTC 101 (476)
T ss_dssp -------------------------------------CTTEEEEEEEESS--SCEEEEEEEEEEBTTBSSSSSCEEEEEE
T ss_pred -------------------------------------CCCEEEEEEEecC--CcccceEEEEEecCCCCCCCCCeEEEEC
Confidence 4556666666663 6789999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHhcCCCcccccCCcccchhhhccccchhhhhhHHHHHHcccHHHHHHHHHhccchHHHHHHHHHHHH
Q psy1007 173 HGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLI 252 (445)
Q Consensus 173 hg~~~v~~~i~~~l~~~~g~r~a~~Gef~~ra~~n~k~dl~~ae~~~~li~A~~~~~~~~al~~~~g~l~~~l~~~~~~l 252 (445)
|||++|+++++++|++. |+|+|+|||||+|||+||||||+|||++.||+.|+++.+++.|+.++.|.+++.+..|++.|
T Consensus 102 HGg~~v~~~~l~~~~~~-g~r~A~pGEFt~RAflngk~dL~qaEav~dli~a~t~~~~~~a~~~l~G~ls~~i~~lr~~L 180 (476)
T 3gee_A 102 HGGPVVVGRVLRLMLDN-GCRLAEPGEFTRRAFLNGRIDLLQAEAIGEMIHARTESAYRTAVSQMKGDLSVRLGGLREQL 180 (476)
T ss_dssp ECCHHHHHHHHHHHHHT-TCEECCTTHHHHHHHHTTSSCHHHHHHHHHHHHCCSHHHHHHHHHHHHTHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHHC-CCeecCCcchhhhhhccCcCcHHHHHHHHHHHhCCCHHHHHHHHHhhCCcHHHHHHHHHHHH
Confidence 99999999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccccCCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCeEEEeeeccccccCCChhHHHHHH
Q psy1007 253 LESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDN 332 (445)
Q Consensus 253 ~~~~a~iE~~Idfse~e~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~g~~~~~gi~~vIvl~k~e~~~Dl~~~~~~~~~ 332 (445)
..+++++|+.|||++++ ++........+++..+..++.....
T Consensus 181 ~~~~a~iea~iDf~eed-i~~~~~~~l~~~i~~l~~~l~~~~~------------------------------------- 222 (476)
T 3gee_A 181 IRSCALIELELDFSEED-VEFQSRDELTMQIETLRSEVNRLID------------------------------------- 222 (476)
T ss_dssp HHHHHTTTTCSSCCSSC-CSSSCHHHHHHHHHHHHHHHHHHHH-------------------------------------
T ss_pred HHHHHHhheecCCCccc-ccchhHHHHHHHHHHHHHHHHHHHH-------------------------------------
Confidence 99999999999999965 5554555555556655555554443
Q ss_pred HHHHHHHHHHhhccCcceeeecccccccccccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC
Q psy1007 333 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG 412 (445)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g 412 (445)
+...++.++++++|+++|+||||||||+|+|++.+...+++.++||++.....+.++|
T Consensus 223 ----------------------~~~~~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g 280 (476)
T 3gee_A 223 ----------------------SYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK 280 (476)
T ss_dssp ----------------------HHHHHHHHHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT
T ss_pred ----------------------HHHhhHhhcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC
Confidence 1122344567899999999999999999999998877788999999999999999999
Q ss_pred eeEEEEECCCCCcCCCCcccHHHHHHHHHhh
Q psy1007 413 YPVILLDTAGLRTTTSDIIETEGNLLEKNNQ 443 (445)
Q Consensus 413 ~~v~l~DTpG~~~~~~~~~e~~~i~~~~~~~ 443 (445)
.++.+|||||+++ ..+.++..++.+++..+
T Consensus 281 ~~l~liDT~G~~~-~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 281 TMFRLTDTAGLRE-AGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp EEEEEEC---------------------CCC
T ss_pred eEEEEEECCCCCc-chhHHHHHHHHHHHhhc
Confidence 9999999999985 45667777777766543
No 2
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=100.00 E-value=4.9e-67 Score=546.63 Aligned_cols=298 Identities=38% Similarity=0.578 Sum_probs=235.4
Q ss_pred CCCCCCCcEEEEccC--CCCceEEEEEEecccHHHHHHHhcCCCCCCCCCCceeEEeeeecCCCCceecceEEEeecccc
Q psy1007 22 SHLAIKNTIFALSSG--HGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPRHG 99 (445)
Q Consensus 22 ~~~~~~dtI~A~at~--~g~~ai~viRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~iD~~i~~~~~~~~ 99 (445)
|||..+|||+|+||| +|+|||||||||||+|.++++++|+......++||+++||+++|
T Consensus 2 ~~~~~~dtI~A~at~~~~g~~~i~iiRiSG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 62 (462)
T 3geh_A 2 SHMAITGTIAAIATAIVPQQGSVGIVRVSGSQAIAIAQTLFDAPGKQVWESHRILYGYIRH------------------- 62 (462)
T ss_dssp CCSSCCSCEEEECSCCBTTBCSCEEEEEESTTHHHHHHHHEECCSCCCCCTTEEEEEEECC-------------------
T ss_pred CCCCCCCCEEEECCCCCCCCceEEEEEeEchhHHHHHHHHhCCCCccCCCCcEEEEEeccc-------------------
Confidence 799999999999999 99999999999999999999999973212234555555555554
Q ss_pred cCcceEeeccCCChHHHhhhhccCCCCCCCCCeEEEeeeeecCCCCeeecCceeeecCCCCCcCCCceeEEEecCcHHHH
Q psy1007 100 KCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVI 179 (445)
Q Consensus 100 ~~giavIrisGp~a~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~~f~~p~syTGEd~~Ei~~hg~~~v~ 179 (445)
+.++++||+++++||++|+||||||++|||||||++|+
T Consensus 63 ------------------------------------------~~~~~~iD~~l~~~f~~p~s~TgEd~~E~~~HGg~~v~ 100 (462)
T 3geh_A 63 ------------------------------------------PQTRQIVDEALLLLMKAPRSYTREDVVEFHCHGGIIAV 100 (462)
T ss_dssp ------------------------------------------SSSCCCCEEEEEEEECTTCSSSSSCEEEEEECCSSSHH
T ss_pred ------------------------------------------CCCCCCcceEEEEEEcCCCCCcCCceEEEECCCCHHHH
Confidence 33477899999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcccccCCcccchhhhccccchhhhhhHHHHHHcccHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcc
Q psy1007 180 NAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASV 259 (445)
Q Consensus 180 ~~i~~~l~~~~g~r~a~~Gef~~ra~~n~k~dl~~ae~~~~li~A~~~~~~~~al~~~~g~l~~~l~~~~~~l~~~~a~i 259 (445)
++++++|++. |+|+|+|||||+|||+||||||+|||++.|++.|+++.+++.|+.++.|.+++.+..|++.+..+++++
T Consensus 101 ~~~l~~~~~~-g~r~A~pGEFt~RAflngk~dL~qaEav~dli~a~t~~~~~~a~~~l~g~~~~~~~~~r~~l~~~~a~i 179 (462)
T 3geh_A 101 QQVLQLCLES-GARLAQPGEFTLRAFLNGRLDLTQAESIADLVGARSPQAAQTALAGLQGKLAHPIRQLRANCLDILAEI 179 (462)
T ss_dssp HHHHHHHHHT-TCEECCTTHHHHHHHHTTSCCHHHHHHHHHHHHCCSHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCeecCCchhhhhHHhcCCcCHHHHHHHHHHHhCCCHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCeEEEeeeccccccCCChhHHHHHHHHHHHHH
Q psy1007 260 EAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRS 339 (445)
Q Consensus 260 E~~Idfse~e~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~g~~~~~gi~~vIvl~k~e~~~Dl~~~~~~~~~~l~~~~~ 339 (445)
|+.|||+++ +++........++..+..++.....
T Consensus 180 Ea~iDf~ed--~~~~~~~~~~~~i~~l~~~l~~~~~-------------------------------------------- 213 (462)
T 3geh_A 180 EARIDFEED--LPPLDDEAIISDIENIAAEISQLLA-------------------------------------------- 213 (462)
T ss_dssp HHHTTSSSS--SCCCCTTTHHHHHHHHHHHHHHHTT--------------------------------------------
T ss_pred Hhhcccccc--CChhhHHHHHHHHHHHHHHHHHHHH--------------------------------------------
Confidence 999999883 3322223333335444444433322
Q ss_pred HHHhhccCcceeeecccccccccccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEE
Q psy1007 340 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLD 419 (445)
Q Consensus 340 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~D 419 (445)
+...++.++++++|+++|+||||||||+|+|++.++..+++.++||+++....+.++|.++.+||
T Consensus 214 ---------------~~~~~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liD 278 (462)
T 3geh_A 214 ---------------TKDKGELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLD 278 (462)
T ss_dssp ---------------THHHHHHHHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC
T ss_pred ---------------HhhhhhhhcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEE
Confidence 22233455678999999999999999999999988777788999999998888889999999999
Q ss_pred CCCCCcCCCCcccHHHHHHHHHhh
Q psy1007 420 TAGLRTTTSDIIETEGNLLEKNNQ 443 (445)
Q Consensus 420 TpG~~~~~~~~~e~~~i~~~~~~~ 443 (445)
|||+++ ..+.++..++.+++..+
T Consensus 279 T~G~~~-~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 279 TAGIRE-TSDQVEKIGVERSRQAA 301 (462)
T ss_dssp ---------------------CCC
T ss_pred CCcccc-chhHHHHHHHHHHhhhh
Confidence 999984 45667888877776543
No 3
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=100.00 E-value=9.9e-58 Score=478.50 Aligned_cols=294 Identities=35% Similarity=0.569 Sum_probs=245.4
Q ss_pred CCCCCCCcEEEEccCCCCceEEEEEEecccHHHHHHHhcCCCCCCCCCCceeEEeeeecCCCCceecceEEEeecccccC
Q psy1007 22 SHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPRHGKC 101 (445)
Q Consensus 22 ~~~~~~dtI~A~at~~g~~ai~viRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~iD~~i~~~~~~~~~~ 101 (445)
|+...+|||+|+|||+|+|||||||||||+|.++++++|+.. ..++||+++||+++|
T Consensus 28 ~~~~~~dtI~A~at~~g~~~i~iiRiSG~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~--------------------- 84 (482)
T 1xzp_A 28 SVDKLMDTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTR--SKIVPRKAIHGWIHE--------------------- 84 (482)
T ss_dssp CCCCSSCCEEEECSCSSSCSCEEEEEESSSHHHHHHTTEEES--SCCCBTBCEEEEECC---------------------
T ss_pred cccccCCCEEEEccCCCCceEEEEEcccHHHHHHHHHHhcCC--CCCCCceEEEEEEec---------------------
Confidence 344557999999999999999999999999999999999511 235666666666654
Q ss_pred cceEeeccCCChHHHhhhhccCCCCCCCCCeEEEeeeeecCCCCeeecCceeeecCCCCCcCCCceeEEEecCcHHHHHH
Q psy1007 102 GVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINA 181 (445)
Q Consensus 102 giavIrisGp~a~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~~f~~p~syTGEd~~Ei~~hg~~~v~~~ 181 (445)
+++.||+++++||++|+||||||++|+|||||++|+++
T Consensus 85 ------------------------------------------~~~~iDe~~v~~~~~p~Sft~Ed~ve~~~hGg~~v~~~ 122 (482)
T 1xzp_A 85 ------------------------------------------NGEDVDEVVVVFYKSPKSYTGEDMVEVMCHGGPLVVKK 122 (482)
T ss_dssp ------------------------------------------SSCCCCEEEEEEECTTSSSSSSCEEEEEECSCHHHHHH
T ss_pred ------------------------------------------CCeeeeEEEEEEEeCCCcCCCCCEeeecCcCcHHHHHH
Confidence 25567888888999999999999999999999999999
Q ss_pred HHHHHhcCCCcccccCCcccchhhhccccchhhhhhHHHHHHcccHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccc
Q psy1007 182 ILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEA 261 (445)
Q Consensus 182 i~~~l~~~~g~r~a~~Gef~~ra~~n~k~dl~~ae~~~~li~A~~~~~~~~al~~~~g~l~~~l~~~~~~l~~~~a~iE~ 261 (445)
+++.|+.+ |+|+|+|||||+|||+||||||.|+|++.|++.|+++.+++.|+.++.|.+.+.+..|++.+...++.+|+
T Consensus 123 ~l~~l~~~-g~r~A~~Geft~raf~nGk~Dl~qaE~i~dli~a~t~~~~~~a~~~l~g~l~~~~~~~r~~l~~~~~~ie~ 201 (482)
T 1xzp_A 123 LLDLFLKS-GARMAEPGEFTKRAFLNGKMDLTSAEAVRDLIEAKSETSLKLSLRNLKGGLRDFVDSLRRELIEVLAEIRV 201 (482)
T ss_dssp HHHHHHTT-TCEECCTTHHHHHHHHTTSSCHHHHHHHHHHHHCCSHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCEeCCCCCcCCcCCCcCCcCHHHHHHHHHHHhhccHHHHHHHHHhcchhHhHHHHHHHHHHHHHHHHhhh
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCeEEEeeeccccccCCChhHHHHHHHHHHHHHHH
Q psy1007 262 YIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQV 341 (445)
Q Consensus 262 ~Idfse~e~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~g~~~~~gi~~vIvl~k~e~~~Dl~~~~~~~~~~l~~~~~~~ 341 (445)
.+||+++ ++..... +..++..+..+|.....
T Consensus 202 ~idf~ee--i~~~~~~-i~~~~~~l~~eL~~l~~---------------------------------------------- 232 (482)
T 1xzp_A 202 ELDYPDE--IETNTGE-VVTRLERIKEKLTEELK---------------------------------------------- 232 (482)
T ss_dssp HHHSTTT--CCCCHHH-HHHHHHHHHHHHHHHHH----------------------------------------------
T ss_pred cCCCCcc--ccchHHH-HHHHHHHHHHHHHHHHH----------------------------------------------
Confidence 9999885 2211222 33445544444444333
Q ss_pred HhhccCcceeeecccccccccccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECC
Q psy1007 342 VQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTA 421 (445)
Q Consensus 342 ~~~~~~~~~~~~~s~~~~~~~~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTp 421 (445)
+...++.++++++|+++|+||||||||+|+|++.++..++++++||+++....+.++|.++.+||||
T Consensus 233 -------------~~~~~~~~r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTa 299 (482)
T 1xzp_A 233 -------------KADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTA 299 (482)
T ss_dssp -------------HHHHHHHHHHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESS
T ss_pred -------------hhhhhhhccCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECC
Confidence 1122334567899999999999999999999998877789999999999999999999999999999
Q ss_pred CCCcCCCCcccHHHHHHHHHhh
Q psy1007 422 GLRTTTSDIIETEGNLLEKNNQ 443 (445)
Q Consensus 422 G~~~~~~~~~e~~~i~~~~~~~ 443 (445)
|++....+.++..++.+++..+
T Consensus 300 G~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 300 GVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp CCCSSCCTTCCCCCHHHHHHHH
T ss_pred CccccchhhHHHHHHHHHHHHh
Confidence 9983334567777777666544
No 4
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.54 E-value=3e-16 Score=164.08 Aligned_cols=169 Identities=15% Similarity=0.118 Sum_probs=142.7
Q ss_pred eeEEeeeecCCCCceecceEEEeecc-cccCcceEeeccCCChHHHhhhhcc-------CCCCCCCCCeEEEeeeeecCC
Q psy1007 72 YASLRNIVDPVSKVVLDEGLCLWFPR-HGKCGVSVIRVSGPDTLNALKSMAC-------YPDQKVSKPRYASLRNIVDPV 143 (445)
Q Consensus 72 ~~~~~~~~d~~~g~~iD~~i~~~~~~-~~~~giavIrisGp~a~~il~~l~~-------~~~~~~~~~rra~~~~~~d~~ 143 (445)
+++||+++|+ |++||++|++||++ +++||++|+++++|++..++++++. |+++||||++|||+||++|++
T Consensus 64 ~~~~~~~~~~--~~~iD~~l~~~f~~P~s~TgEd~~E~~~HGg~~v~~~~l~~~~~~g~r~A~pGEFt~RAflngk~dL~ 141 (476)
T 3gee_A 64 TAHFGRLYDG--EEMVDEVIALVFRAPRSFTAEQMVEFTCHGGPVVVGRVLRLMLDNGCRLAEPGEFTRRAFLNGRIDLL 141 (476)
T ss_dssp EEEEEEEESS--SCEEEEEEEEEEBTTBSSSSSCEEEEEEECCHHHHHHHHHHHHHTTCEECCTTHHHHHHHHTTSSCHH
T ss_pred EEEEEEEecC--CcccceEEEEEecCCCCCCCCCeEEEECCCCHHHHHHHHHHHHHCCCeecCCcchhhhhhccCcCcHH
Confidence 5799999995 78999999999999 8999999999999999999988753 889999999999999999998
Q ss_pred CCeeecCceeeecCCCCCcCCCceeEEEecCcHHHHHHHHHHHhcCCCcccccCCcccchhhhccccchhhhhhHHHHHH
Q psy1007 144 SEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQ 223 (445)
Q Consensus 144 ~~~~~d~~~~~~f~~p~syTGEd~~Ei~~hg~~~v~~~i~~~l~~~~g~r~a~~Gef~~ra~~n~k~dl~~ae~~~~li~ 223 (445)
|+| ++ +||+.|++......
T Consensus 142 qaE-----------------------------------------av--------------------~dli~a~t~~~~~~ 160 (476)
T 3gee_A 142 QAE-----------------------------------------AI--------------------GEMIHARTESAYRT 160 (476)
T ss_dssp HHH-----------------------------------------HH--------------------HHHHHCCSHHHHHH
T ss_pred HHH-----------------------------------------HH--------------------HHHHhCCCHHHHHH
Confidence 877 44 89999999999999
Q ss_pred cccHHHHHHHHHhccchHHHHHHHHHHHHHHHHhccccccccCCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy1007 224 AETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVR 303 (445)
Q Consensus 224 A~~~~~~~~al~~~~g~l~~~l~~~~~~l~~~~a~iE~~Idfse~e~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~g~~ 303 (445)
|.. |+++++++....+++.+.+++..++..+++.|.++++.+.. .+.+....+..-..++.+... .++.
T Consensus 161 a~~--~l~G~ls~~i~~lr~~L~~~~a~iea~iDf~eedi~~~~~~-----~l~~~i~~l~~~l~~~~~~~~----~~~~ 229 (476)
T 3gee_A 161 AVS--QMKGDLSVRLGGLREQLIRSCALIELELDFSEEDVEFQSRD-----ELTMQIETLRSEVNRLIDSYQ----HGRI 229 (476)
T ss_dssp HHH--HHHTHHHHHHHHHHTHHHHHHHTTTTCSSCCSSCCSSSCHH-----HHHHHHHHHHHHHHHHHHHHH----HHHH
T ss_pred HHH--hhCCcHHHHHHHHHHHHHHHHHHhheecCCCcccccchhHH-----HHHHHHHHHHHHHHHHHHHHH----hhHh
Confidence 877 89999999999999999999999999999999766654433 344444555555666666776 5677
Q ss_pred cccCCeEEEee
Q psy1007 304 IRSGIKSVICL 314 (445)
Q Consensus 304 ~~~gi~~vIvl 314 (445)
+++|++++|+-
T Consensus 230 ~r~~~kV~ivG 240 (476)
T 3gee_A 230 VSEGVSTVIAG 240 (476)
T ss_dssp HHHCEEEEEEC
T ss_pred hcCCCEEEEEC
Confidence 88999977763
No 5
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.52 E-value=7.5e-16 Score=160.44 Aligned_cols=158 Identities=16% Similarity=0.079 Sum_probs=129.7
Q ss_pred CceecceEEEeecc-cccCcceEeeccCCChHHHhhhhcc-------CCCCCCCCCeEEEeeeeecCCCCeeecCceeee
Q psy1007 84 KVVLDEGLCLWFPR-HGKCGVSVIRVSGPDTLNALKSMAC-------YPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLW 155 (445)
Q Consensus 84 g~~iD~~i~~~~~~-~~~~giavIrisGp~a~~il~~l~~-------~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~~ 155 (445)
|++||++|++||++ +++||++|+++|+|++..++++++. |+++|||||+|||+|+++|++|+|
T Consensus 66 ~~~iD~~l~~~f~~p~s~TgEd~~E~~~HGg~~v~~~~l~~~~~~g~r~A~pGEFt~RAflngk~dL~qaE--------- 136 (462)
T 3geh_A 66 RQIVDEALLLLMKAPRSYTREDVVEFHCHGGIIAVQQVLQLCLESGARLAQPGEFTLRAFLNGRLDLTQAE--------- 136 (462)
T ss_dssp CCCCEEEEEEEECTTCSSSSSCEEEEEECCSSSHHHHHHHHHHHTTCEECCTTHHHHHHHHTTSCCHHHHH---------
T ss_pred CCCcceEEEEEEcCCCCCcCCceEEEECCCCHHHHHHHHHHHHHCCCeecCCchhhhhHHhcCCcCHHHHH---------
Confidence 56999999999999 8999999999999999999987753 889999999999999999998876
Q ss_pred cCCCCCcCCCceeEEEecCcHHHHHHHHHHHhcCCCcccccCCcccchhhhccccchhhhhhHHHHHHcccHHHHHHHHH
Q psy1007 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALH 235 (445)
Q Consensus 156 f~~p~syTGEd~~Ei~~hg~~~v~~~i~~~l~~~~g~r~a~~Gef~~ra~~n~k~dl~~ae~~~~li~A~~~~~~~~al~ 235 (445)
++ +||+.|++...+..|.. |+++.++
T Consensus 137 --------------------------------av--------------------~dli~a~t~~~~~~a~~--~l~g~~~ 162 (462)
T 3geh_A 137 --------------------------------SI--------------------ADLVGARSPQAAQTALA--GLQGKLA 162 (462)
T ss_dssp --------------------------------HH--------------------HHHHHCCSHHHHHHHHH--HHHTTTH
T ss_pred --------------------------------HH--------------------HHHHhCCCHHHHHHHHH--HhchhHH
Confidence 44 89999999999998877 8999999
Q ss_pred hccchHHHHHHHHHHHHHHHHhccccccccCCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCeEEEee
Q psy1007 236 QMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICL 314 (445)
Q Consensus 236 ~~~g~l~~~l~~~~~~l~~~~a~iE~~Idfse~e~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~g~~~~~gi~~vIvl 314 (445)
+....+++.+.+++..++..+++.| ++++.+.+ .+......+..-..++..... .+..+++|++++|+-
T Consensus 163 ~~~~~~r~~l~~~~a~iEa~iDf~e-d~~~~~~~-----~~~~~i~~l~~~l~~~~~~~~----~~~~~r~~~kV~ivG 231 (462)
T 3geh_A 163 HPIRQLRANCLDILAEIEARIDFEE-DLPPLDDE-----AIISDIENIAAEISQLLATKD----KGELLRTGLKVAIVG 231 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSS-SSCCCCTT-----THHHHHHHHHHHHHHHTTTHH----HHHHHHHCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhccccc-cCChhhHH-----HHHHHHHHHHHHHHHHHHHhh----hhhhhcCCCEEEEEc
Confidence 9999999999999999999999998 56554443 223333444444455555555 456678999877764
No 6
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.48 E-value=1.9e-15 Score=149.22 Aligned_cols=168 Identities=22% Similarity=0.231 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHHhccc-cccccCCCcc-cchhhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCeEEEeeeccc
Q psy1007 241 LKQLYSEWRQLILESLASVE-AYIDFSEDEI-IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVE 318 (445)
Q Consensus 241 l~~~l~~~~~~l~~~~a~iE-~~Idfse~e~-~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~g~~~~~gi~~vIvl~k~e 318 (445)
|.+.++|.+.+.++.++|+| ..+.++-.+| ++...++++ +. .++ ..|++++||+||+|
T Consensus 69 i~~i~~R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~---L~--------~~~---------~~~~~~vivlnK~D 128 (307)
T 1t9h_A 69 LMEIKERTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRF---LV--------LVE---------ANDIQPIICITKMD 128 (307)
T ss_dssp EEEECCCSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHH---HH--------HHH---------TTTCEEEEEEECGG
T ss_pred EEEEcchhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHH---HH--------HHH---------HCCCCEEEEEECCc
Confidence 33344444445556899999 4555555545 554444444 22 344 68999999999977
Q ss_pred cccCCChhH--HHHHHHHHHHHHHHHhhccCcceeeecccccccc------cccCcEEEEEcCCCCChhHHhhhhccccc
Q psy1007 319 AYIDFSEDE--IIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVR------IRSGIKSVIVGEPNVGKSSLMNFLCQKQI 390 (445)
Q Consensus 319 ~~~Dl~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~------~~~~~~v~lvG~~~vGKSsLln~l~~~~~ 390 (445)
+..+ ++ +..++|.+.|++.+ |+++.+|+..+.. +.+|..++++|+||+|||||+|.|++...
T Consensus 129 L~~~---~~~~~~~~~~~~~y~~~g-------~~v~~~sa~~~~g~~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 129 LIED---QDTEDTIQAYAEDYRNIG-------YDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp GCCC---HHHHHHHHHHHHHHHHHT-------CCEEECCHHHHTTCTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred cCch---hhhHHHHHHHHHHHHhCC-------CeEEEEecCCCCCHHHHHhhcCCCEEEEECCCCCCHHHHHHHhccccc
Confidence 6422 12 23457889998887 8899888776543 34788999999999999999999998654
Q ss_pred eeeecCC-------CccceEEEEEEEECCeeEEEEECCCCCcCCCCcccHHHHHHHHHh
Q psy1007 391 SIVTSIP-------GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKNN 442 (445)
Q Consensus 391 ~~vs~~~-------~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~~~~e~~~i~~~~~~ 442 (445)
...+... +||+.... +... ...++||||+..+....++.+.+...|++
T Consensus 199 ~~~G~I~~~~~~G~~tt~~~~~--~~~~--~g~v~dtpg~~~~~l~~lt~e~l~~~f~~ 253 (307)
T 1t9h_A 199 LRTNEISEHLGRGKHTTRHVEL--IHTS--GGLVADTPGFSSLEFTDIEEEELGYTFPD 253 (307)
T ss_dssp ----------------CCCCCE--EEET--TEEEESSCSCSSCCCTTCCHHHHGGGSHH
T ss_pred ccccceeeecCCCcccccHHHH--hhcC--CEEEecCCCccccccccCCHHHHHHHHHH
Confidence 3323222 35544332 2332 23799999999776544544555444443
No 7
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.39 E-value=2.1e-12 Score=126.06 Aligned_cols=107 Identities=24% Similarity=0.382 Sum_probs=69.0
Q ss_pred cCCeEEEeeeccccccCCChhHHHHHHHHHHHHHHHHhhccCcceeeeccccccccc-----------------------
Q psy1007 306 SGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRI----------------------- 362 (445)
Q Consensus 306 ~gi~~vIvl~k~e~~~Dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~----------------------- 362 (445)
.+.+.+||+||+|+. +. ...+.|.+.|++.+ ++++.+|+..+..+
T Consensus 49 ~~kp~ilVlNK~DL~----~~-~~~~~~~~~~~~~g-------~~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~ 116 (282)
T 1puj_A 49 KNKPRIMLLNKADKA----DA-AVTQQWKEHFENQG-------IRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGV 116 (282)
T ss_dssp SSSCEEEEEECGGGS----CH-HHHHHHHHHHHTTT-------CCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEECcccC----CH-HHHHHHHHHHHhcC-------CcEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 578899999997763 22 22346677776543 57777787755322
Q ss_pred -ccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCC
Q psy1007 363 -RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT 427 (445)
Q Consensus 363 -~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~ 427 (445)
..+++++++|.||||||||+|+|++.....++..+++|++... +.+ +..+.++||||+....
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtpG~~~~~ 179 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKV-GKELELLDTPGILWPK 179 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEE-TTTEEEEECCCCCCSC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE--EEe-CCCEEEEECcCcCCCC
Confidence 1346899999999999999999999887778899999988764 333 3467899999998543
No 8
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae}
Probab=99.38 E-value=1.7e-12 Score=132.42 Aligned_cols=158 Identities=16% Similarity=0.182 Sum_probs=115.3
Q ss_pred EEEccCCC---CceEEEEEEecccHHHHHHHhcCCCCCCCCCCceeEEeeeecCCCCceecceEEEeecc----------
Q psy1007 31 FALSSGHG---KCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR---------- 97 (445)
Q Consensus 31 ~A~at~~g---~~ai~viRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~iD~~i~~~~~~---------- 97 (445)
-|+.+..| .|..++|+|+||||.++|+.+++ +|.+.++++++.|+.++|+. |.++||.+++...+
T Consensus 70 ~avR~~~gl~DvSh~g~i~V~G~DA~~fL~~l~t-ndv~~l~~G~~~yt~~ln~~-G~i~dD~~V~rl~~d~~~lv~~a~ 147 (393)
T 3gir_A 70 LHTRAHAGLFDISHMKLIAVEGPKAVEFLSYALP-VDAALLKIGQSRYSYLLNER-AGILDDLILTRLAECRFMLVANAG 147 (393)
T ss_dssp HHHHHSEEEEECTTSEEEEEESTTHHHHHHHHSS-SCTTTSCTTBEEEEEEECTT-CCEEEEEEEEEEETTEEEEEECGG
T ss_pred HHHHhCeEEEeCCCcEEEEEECCCHHHHhhhhcc-cccccCCCCcEEEEEEECCC-CcEEEEEEEEEecCCEEEEEECch
Confidence 34555555 67789999999999999999998 55667789999999999986 77999999998753
Q ss_pred -------------cc------cCcceEeeccCCChHHHhhhhccCCCCCCCCCeEEEeeeeecCCCCeeecCceeeecCC
Q psy1007 98 -------------HG------KCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158 (445)
Q Consensus 98 -------------~~------~~giavIrisGp~a~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~~f~~ 158 (445)
.. ....+++.||||.+..++++++. +... .+...+ .. ..+ -.+.+
T Consensus 148 ~~~~~~~~L~~~~~~~~V~i~~~~~a~lalqGP~A~~vL~~l~~-~l~~--~~~~~~----~~---~~i------~~~i~ 211 (393)
T 3gir_A 148 NAQADFAELEKRAFGFECQVIALERVLLALQGPQAAAVLADAGL-PGNE--LLFMQG----FE---PQQ------DWFIT 211 (393)
T ss_dssp GHHHHHHHHHHHTTTSSCEEEECCCEEEEEESTTHHHHHHHTTC-CCTT--CCTTBE----EC---SST------TCEEE
T ss_pred hHHHHHHHHHhhccCCceEEEECCEEEEEEECccHHHHHHHhcC-chhh--ccccee----EE---EEE------eEEEE
Confidence 01 12458999999999999999975 3311 111111 00 111 13456
Q ss_pred CCCcCCCceeEEEecCcHHHHHHHHHHHhcCCCcccccCCcccchhhhcc
Q psy1007 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNN 208 (445)
Q Consensus 159 p~syTGEd~~Ei~~hg~~~v~~~i~~~l~~~~g~r~a~~Gef~~ra~~n~ 208 (445)
+++||||+++||+|+.+.+ ..+|++|....|++|++.+....-.+..|
T Consensus 212 R~gytGE~G~Ei~~p~~~a--~~lw~~L~~a~g~~p~Gl~A~d~LRiEaG 259 (393)
T 3gir_A 212 RSGYTGEDGFEIALPIGCA--RALAEKLLGDSRVEWVGLAARDSLRLEAG 259 (393)
T ss_dssp SCCSSSSSEEEEEECHHHH--HHHHHHHHTSTTEEECCHHHHHHHHHHTT
T ss_pred eCCCCCCCeEEEEEEHHHH--HHHHHHHHhcCCceeccccchhhHHHhcC
Confidence 8899999999999997766 77999998755888887655444333333
No 9
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A*
Probab=99.32 E-value=2e-12 Score=131.42 Aligned_cols=158 Identities=17% Similarity=0.249 Sum_probs=116.4
Q ss_pred EEEccCCC---CceEEEEEEecccHHHHHHHhcCCCCCCCC-CCceeEEeeeecCCCCceecceEEEeecc---------
Q psy1007 31 FALSSGHG---KCGVSVIRVSGPDTLNALKSMACYPDQKVP-KPRYASLRNIVDPVSKVVLDEGLCLWFPR--------- 97 (445)
Q Consensus 31 ~A~at~~g---~~ai~viRiSG~~a~~i~~~l~~~~~~~~~-~~~~~~~~~~~d~~~g~~iD~~i~~~~~~--------- 97 (445)
-|+.+..| .|-.++|+|+||||.++|+.+++ +|...+ +++++.|+.++|+. |.++||.+++....
T Consensus 50 ~avr~~~gl~DlS~~g~i~v~G~DA~~fLq~l~t-~dv~~l~~~g~~~yt~~ln~~-G~i~~D~~v~r~~~d~~~lv~~a 127 (381)
T 1vlo_A 50 HAVRTDAGMFDVSHMTIVDLRGSRTREFLRYLLA-NDVAKLTKSGKALYSGMLNAS-GGVIDDLIVYYFTEDFFRLVVNS 127 (381)
T ss_dssp HHHHHSCEEEECTTSEEEEEESTTHHHHHHHHBS-SCGGGCCSTTBEEEEEEECTT-SCEEEEEEEEEEETTEEEEEECG
T ss_pred HHHHhCeEEEECCCcEEEEEECCCHHHHHHHhcc-ccccccCCCCCEEEEEEECCC-CcEEEEEEEEEEeCCEEEEEECc
Confidence 34555554 56778999999999999999998 556667 89999999999986 77999999998764
Q ss_pred ---------------------cccCcceEeeccCCChHHHhhhhc----cCCCCCCCCCeEEEeeeeecCCCCeeecCce
Q psy1007 98 ---------------------HGKCGVSVIRVSGPDTLNALKSMA----CYPDQKVSKPRYASLRNIVDPVSEVVLDEGL 152 (445)
Q Consensus 98 ---------------------~~~~giavIrisGp~a~~il~~l~----~~~~~~~~~~rra~~~~~~d~~~~~~~d~~~ 152 (445)
......+++.++||.+..++++++ ...... .+...+... +
T Consensus 128 ~~~~~~~~~L~~~~~~~~V~i~ds~~~~~lalqGP~a~~~l~~l~~~~~~~~l~~--~~~~~~~~~--g----------- 192 (381)
T 1vlo_A 128 ATREKDLSWITQHAEPFGIEITVRDDLSMIAVQGPNAQAKAATLFNDAQRQAVEG--MKPFFGVQA--G----------- 192 (381)
T ss_dssp GGHHHHHHHHHHHHGGGTCEEEECTTEEEEEEESTTHHHHHHTTCCHHHHHHHTT--CCSSBEEEE--T-----------
T ss_pred ccHHHHHHHHHHhccCCceEEEECCCEEEEEEECccHHHHHHHhhccccCCCccc--CCcceeEEe--c-----------
Confidence 013347899999999999999886 211111 111111100 1
Q ss_pred eeecCCCCCcCCCceeEEEecCcHHHHHHHHHHHhcCCCcccccCCcccchhhhccc
Q psy1007 153 CLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNK 209 (445)
Q Consensus 153 ~~~f~~p~syTGEd~~Ei~~hg~~~v~~~i~~~l~~~~g~r~a~~Gef~~ra~~n~k 209 (445)
-.+.++++||||+++||+++.+.+ ..+|+.|.+. |++|++++......+..|.
T Consensus 193 -~~~i~R~gytGe~G~ei~~~~~~a--~~l~~~L~~~-g~~p~G~~a~d~LRiEaG~ 245 (381)
T 1vlo_A 193 -DLFIATTGYTGEAGYEIALPNEKA--ADFWRALVEA-GVKPCGLGARDTLRLEAGM 245 (381)
T ss_dssp -TEEEECCCSSSSCEEEEEEEHHHH--HHHHHHHHHT-TCEECCHHHHHHHHHHTTC
T ss_pred -cEEEEecCCCCCCEEEEEEeHHHH--HHHHHHHHhc-CCcccCHHHHHHHHHHcCC
Confidence 145678899999999999997765 6799999987 8888877666555555553
No 10
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.31 E-value=1.7e-12 Score=130.61 Aligned_cols=157 Identities=22% Similarity=0.205 Sum_probs=100.6
Q ss_pred HHHhccc-cccccCCCcc-cchhhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCeEEEeeeccccccCCChhHHHHH
Q psy1007 254 ESLASVE-AYIDFSEDEI-IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIED 331 (445)
Q Consensus 254 ~~~a~iE-~~Idfse~e~-~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~g~~~~~gi~~vIvl~k~e~~~Dl~~~~~~~~ 331 (445)
.+++|+| ..+.++- .| ++...++++ |. .++ ..|++++||+||+|+..+ ++....+
T Consensus 126 ~i~anvD~v~iv~a~-~P~~~~~~i~r~---L~--------~a~---------~~~~~~iivlNK~DL~~~--~~~~~~~ 182 (358)
T 2rcn_A 126 PIAANIDQIVIVSAI-LPELSLNIIDRY---LV--------GCE---------TLQVEPLIVLNKIDLLDD--EGMDFVN 182 (358)
T ss_dssp EEEECCCEEEEEEES-TTTCCHHHHHHH---HH--------HHH---------HHTCEEEEEEECGGGCCH--HHHHHHH
T ss_pred HHHhcCCEEEEEEeC-CCCCCHHHHHHH---HH--------HHH---------hcCCCEEEEEECccCCCc--hhHHHHH
Confidence 3578899 4455443 34 554444444 22 334 578999999999776422 1112244
Q ss_pred HHHHHHHHHHHhhccCcceeeeccccccccc------ccCcEEEEEcCCCCChhHHhhhhccccc-eeeecCC---C---
Q psy1007 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRI------RSGIKSVIVGEPNVGKSSLMNFLCQKQI-SIVTSIP---G--- 398 (445)
Q Consensus 332 ~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~------~~~~~v~lvG~~~vGKSsLln~l~~~~~-~~vs~~~---~--- 398 (445)
+|++.|++.| |+++.+|+..+..+ ..|..++++|++|+|||||+|.|++... ...+... +
T Consensus 183 ~~~~~y~~~G-------~~v~~~Sa~~~~gl~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~ 255 (358)
T 2rcn_A 183 EQMDIYRNIG-------YRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQ 255 (358)
T ss_dssp HHHHHHHTTT-------CCEEECBTTTTBTHHHHHHHHTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC----------
T ss_pred HHHHHHHhCC-------CcEEEEecCCCcCHHHHHHhcCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCc
Confidence 6788888776 89999998877544 2678999999999999999999998654 3222211 2
Q ss_pred -ccceEEEEEEEECCeeEEEEECCCCCcCCCCcccHHHHHHHHHhh
Q psy1007 399 -TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKNNQ 443 (445)
Q Consensus 399 -tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~~~~e~~~i~~~~~~~ 443 (445)
+|+......+. .+ ..++||||+.++....++..++...++++
T Consensus 256 ~tt~~~~i~~v~-q~--~~l~dtpgv~e~~l~~l~~~e~~~~~~e~ 298 (358)
T 2rcn_A 256 HTTTAARLYHFP-HG--GDVIDSPGVREFGLWHLEPEQITQGFVEF 298 (358)
T ss_dssp ---CCCEEEECT-TS--CEEEECHHHHTCCCCCCCHHHHHHTSGGG
T ss_pred cceEEEEEEEEC-CC--CEecCcccHHHhhhcCCCHHHHHHHHHHH
Confidence 33333322221 12 25899999998877667777776666654
No 11
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.29 E-value=3.4e-12 Score=129.21 Aligned_cols=126 Identities=21% Similarity=0.248 Sum_probs=79.5
Q ss_pred cCCeEEEeeeccccccCCChhHHHHHHHHHHHHHHHHhhccCcceeeecccccccccc----------cCcEEEEEcCCC
Q psy1007 306 SGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIR----------SGIKSVIVGEPN 375 (445)
Q Consensus 306 ~gi~~vIvl~k~e~~~Dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~----------~~~~v~lvG~~~ 375 (445)
.+.++++|+||+|++.+-...+...+.+...+++.+ ....+++.+|+.++..+. .+.+++++|.||
T Consensus 95 ~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g----~~~~~v~~iSA~~g~gi~~L~~~l~~~~~~~~i~~vG~~n 170 (368)
T 3h2y_A 95 GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLG----LKPEDVFLISAAKGQGIAELADAIEYYRGGKDVYVVGCTN 170 (368)
T ss_dssp SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTT----CCCSEEEECCTTTCTTHHHHHHHHHHHHTTSCEEEEEBTT
T ss_pred CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcC----CCcccEEEEeCCCCcCHHHHHhhhhhhcccceEEEecCCC
Confidence 478999999998875332222223222222333333 111278889998875432 578999999999
Q ss_pred CChhHHhhhhcccc------ceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCC--CCcccHHHHHH
Q psy1007 376 VGKSSLMNFLCQKQ------ISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT--SDIIETEGNLL 438 (445)
Q Consensus 376 vGKSsLln~l~~~~------~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~--~~~~e~~~i~~ 438 (445)
+|||||+|+|++.. ...++..++||++.....+ +. .+.++||||+.+.. .+.+..+.+..
T Consensus 171 vGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~~-~~~liDtPG~~~~~~~~~~l~~~~l~~ 238 (368)
T 3h2y_A 171 VGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL--DE-ESSLYDTPGIINHHQMAHYVGKQSLKL 238 (368)
T ss_dssp SSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEES--SS-SCEEEECCCBCCTTSGGGGSCHHHHHH
T ss_pred CChhHHHHHHHhhhccccccceecCCCCCeecceEEEEe--cC-CeEEEeCCCcCcHHHHHHHhhHHHHHH
Confidence 99999999999863 3446888999998876443 32 26899999997543 22344555544
No 12
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A*
Probab=99.28 E-value=4e-12 Score=128.73 Aligned_cols=143 Identities=12% Similarity=0.114 Sum_probs=104.4
Q ss_pred EEEccCCC---CceEEEEEEecccHHHHHHHhcCCCCCCCCCCceeEEeeeecCCCCceecceEEEeecc----------
Q psy1007 31 FALSSGHG---KCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR---------- 97 (445)
Q Consensus 31 ~A~at~~g---~~ai~viRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~iD~~i~~~~~~---------- 97 (445)
-|+.+..| .|-.++|+|+||||.++|+++++ +|...++++++.|+.++|++ |.++||.+++....
T Consensus 49 ~avR~~~glfDvSh~g~i~v~G~DA~~fL~~l~t-~dv~~L~~G~~~yt~~ln~~-G~i~dD~~v~r~~ed~~~l~~~~~ 126 (369)
T 3tfi_A 49 KHLKEHVQIWDVAAERQVEISGKDSAELVQLMTC-RDLSKSKIGRCYYCPIIDEN-GNLVNDPVVLKLDENKWWISIADS 126 (369)
T ss_dssp HHHHHSCEEEECTTSCEEEEESTTHHHHHHHHBS-SCCTTCCTTBEEECCEECTT-SCEEECCEEEEEETTEEEEECCSS
T ss_pred HHHHcCeEEEeCCCCEEEEEECCCHHHHHhhhcc-cccccCCCCcEEEEEEECCC-CCEEEEEEEEEecCCEEEEEECcH
Confidence 45555555 67788999999999999999998 56677789999999999986 77999999987754
Q ss_pred --------c----------ccCcceEeeccCCChHHHhhhhccCCCCCCCCCeEEEeeeeecCCCCeeecCceeeecCCC
Q psy1007 98 --------H----------GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKP 159 (445)
Q Consensus 98 --------~----------~~~giavIrisGp~a~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~~f~~p 159 (445)
. .....+++.||||.+..++++++..+....++- .+....++ +. -.+.++
T Consensus 127 ~~~~~l~~~~~~~~~~V~i~~~~~a~lalqGP~A~~~L~~l~~~~l~~l~~~--~~~~~~i~---g~-------~~~i~R 194 (369)
T 3tfi_A 127 DVIFFAKGLASGHKFDVKIVEPVVDIMAIQGPKSFALMEKVFGKKITELKFF--GFDYFDFE---GT-------KHLIAR 194 (369)
T ss_dssp CHHHHHHHHHHHHTCCCEEECCSCEEEEEESTTHHHHHHHHHCGGGGGCCTT--BEEEEEET---TE-------EEEEES
T ss_pred HHHHHHHHhhhhcCCeEEEEECCEEEEEEECccHHHHHHhhcCCchhhCCCc--eEEEEEEC---Ce-------EEEEEe
Confidence 0 012468999999999999999875332111111 11111111 11 135678
Q ss_pred CCcCCCceeEEEecC-cHHHHHHHHHHHhcC
Q psy1007 160 NSFTGEDCCEFQVHG-SIAVINAILGALTKL 189 (445)
Q Consensus 160 ~syTGEd~~Ei~~hg-~~~v~~~i~~~l~~~ 189 (445)
++|||||++||+|+. +.+ ..+|++|...
T Consensus 195 ~gytGE~G~Ei~~~~~~~a--~~lw~~L~~a 223 (369)
T 3tfi_A 195 SGWSKQGGYEVYVENTQSG--QKLYDHLFEV 223 (369)
T ss_dssp CCSSSSCEEEEEECSHHHH--HHHHHHHHHH
T ss_pred CccCCCCeEEEEEecHHHH--HHHHHHHHhh
Confidence 899999999999998 766 6689988864
No 13
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A
Probab=99.27 E-value=1.2e-11 Score=124.99 Aligned_cols=161 Identities=17% Similarity=0.168 Sum_probs=114.6
Q ss_pred EEccCCC---CceEEEEEEecccHHHHHHHhcCCCCCCCCCCceeEEeeeecCCCCceecceEEEeecc-----------
Q psy1007 32 ALSSGHG---KCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR----------- 97 (445)
Q Consensus 32 A~at~~g---~~ai~viRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~iD~~i~~~~~~----------- 97 (445)
|+.+..| .|-.++|+|+||||.++|+.+++ +|...++++++.|+.++|+. |.++||.++++..+
T Consensus 38 a~r~~~gl~dls~~~~i~v~G~da~~fL~~l~t-~dv~~l~~g~~~yt~~ln~~-G~i~~d~~v~r~~~d~~ll~~~a~~ 115 (364)
T 1wos_A 38 AVRKSVGMFDVSHMGEFLVKGPEAVSFIDFLIT-NDFSSLPDGKAIYSVMCNEN-GGIIDDLVVYKVSPDEALMVVNAAN 115 (364)
T ss_dssp HHHHSCEEEECTTSEEEEEESTTHHHHHHHHBS-SCCTTCCTTEEEEEEEECTT-SCEEEEEEEEEEETTEEEEEECGGG
T ss_pred HHHhCeEEEECCCcEEEEEECCCHHHHHHHhcc-cccccCCCCCEEEEEEECCC-CeEEEEEEEEEEeCCEEEEEECccc
Confidence 4444444 56678999999999999999998 56677789999999999986 78999999998854
Q ss_pred --------------------cccCcceEeeccCCChHHHhhhhccCCCCCCCCCeEEEeeeeecCCCCeeecCceeeecC
Q psy1007 98 --------------------HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157 (445)
Q Consensus 98 --------------------~~~~giavIrisGp~a~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~~f~ 157 (445)
+.....+++.++||.+..++++++..+... .+...+....++ + .-.+.
T Consensus 116 ~~~~~~~L~~~~~~~~V~i~d~s~~~~~l~l~Gp~a~~~L~~l~~~dl~~--l~~~~~~~~~~~---g-------~~~~i 183 (364)
T 1wos_A 116 IEKDFNWIKSHSKNFDVEVSNISDTTALIAFQGPKAQETLQELVEDGLEE--IAYYSFRKSIVA---G-------VETLV 183 (364)
T ss_dssp HHHHHHHHHTTCTTSSCEEEECGGGEEEEEEESTTHHHHHGGGBSSCSTT--SCTTBEEEEEET---T-------EEEEE
T ss_pred HHHHHHHHHHhccCCCEEEEECcCCEEEEEEECcCHHHHHHHhhCCCccc--cCccceEEEEEC---C-------eEEEE
Confidence 112346899999999999999997533311 111111111111 1 11345
Q ss_pred CCCCcCCCceeEEEecCcHHHHHHHHHHHhcCCC----cccccCCcccchhhhccc
Q psy1007 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG----LRPAEPGEFSKRAFFNNK 209 (445)
Q Consensus 158 ~p~syTGEd~~Ei~~hg~~~v~~~i~~~l~~~~g----~r~a~~Gef~~ra~~n~k 209 (445)
.+.+||||+++||+|+.+.+ ..+|+.|... | +++++.+.+....+..|.
T Consensus 184 ~R~g~tge~G~ei~~~~~~a--~~l~~~L~~a-g~~~g~~~~g~~a~~~lRie~G~ 236 (364)
T 1wos_A 184 SRTGYTGEDGFELMLEAKNA--PKVWDALMNL-LRKIDGRPAGLGARDVCRLEATY 236 (364)
T ss_dssp ESCCSSSSSEEEEEEEGGGH--HHHHHHHHHH-HHHHTCEECCHHHHHHHHHHTTC
T ss_pred EecCCCCCCeEEEEEeHHHH--HHHHHHHHhc-chhcCceeCCHHHHhhhhHhcCC
Confidence 67899999999999998876 6789988754 4 777766655544444443
No 14
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.26 E-value=5e-12 Score=128.00 Aligned_cols=115 Identities=20% Similarity=0.188 Sum_probs=79.5
Q ss_pred cCCeEEEeeeccccccCCChhHHHHHHHHHHHHHHHHhhccCcceeeecccccccccc----------cCcEEEEEcCCC
Q psy1007 306 SGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIR----------SGIKSVIVGEPN 375 (445)
Q Consensus 306 ~gi~~vIvl~k~e~~~Dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~----------~~~~v~lvG~~~ 375 (445)
.+.++++|+||+|++.+-...+...+.+.+.+++.+ ...++++.+|+.++..+. .+.+++++|.||
T Consensus 97 ~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g----~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~~~i~~vG~~n 172 (369)
T 3ec1_A 97 ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELG----LCPVDVCLVSAAKGIGMAKVMEAINRYREGGDVYVVGCTN 172 (369)
T ss_dssp TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTT----CCCSEEEECBTTTTBTHHHHHHHHHHHHTTSCEEEECCTT
T ss_pred CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcC----CCcccEEEEECCCCCCHHHHHHHHHhhcccCcEEEEcCCC
Confidence 367899999998875432222223222222334333 112478889999875432 577899999999
Q ss_pred CChhHHhhhhccc-----cceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCC
Q psy1007 376 VGKSSLMNFLCQK-----QISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT 427 (445)
Q Consensus 376 vGKSsLln~l~~~-----~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~ 427 (445)
+|||||+|+|++. ....++..++||++.....+ + ..+.++||||+....
T Consensus 173 vGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~-~~~~liDtPG~~~~~ 226 (369)
T 3ec1_A 173 VGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPL--E-SGATLYDTPGIINHH 226 (369)
T ss_dssp SSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEEC--S-TTCEEEECCSCCCCS
T ss_pred CchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEe--C-CCeEEEeCCCcCcHH
Confidence 9999999999987 45567899999998876443 3 236899999998543
No 15
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A*
Probab=99.22 E-value=3.6e-11 Score=121.96 Aligned_cols=161 Identities=15% Similarity=0.092 Sum_probs=112.6
Q ss_pred EEccCCC---CceEEEEEEecccHHHHHHHhcCCCCCCCCCCceeEEeeeecCCCCceecceEEEeecc-----------
Q psy1007 32 ALSSGHG---KCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR----------- 97 (445)
Q Consensus 32 A~at~~g---~~ai~viRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~iD~~i~~~~~~----------- 97 (445)
|+.+..| .|-.++|+|+||||.++|+.+++ +|...++++++.|+.++|+. |.++||.+++++.+
T Consensus 43 a~r~~~gl~Dls~~g~i~v~G~da~~fLq~l~t-~dv~~l~~g~~~y~~~ln~~-G~i~~D~~v~r~~~d~~~lv~~a~~ 120 (375)
T 1wsr_A 43 HTRQHCSLFDVSHMLQTKILGSDRVKLMESLVV-GDIAELRPNQGTLSLFTNEA-GGILDDLIVTNTSEGHLYVVSNAGC 120 (375)
T ss_dssp HHHHSEEEEECTTSEEEEEESTTHHHHHHHHBS-SCCTTCCTTEEEEEEEECTT-CCEEEEEEEEECTTSSEEEEECGGG
T ss_pred HHHhCcEEEECCceEEEEEECCCHHHHHHHhcc-cccCcCCCCCEEEEEEECCC-CeEEEEEEEEEEcCCEEEEEeCCcc
Confidence 4444443 46678999999999999999998 56677889999999999986 77999999998764
Q ss_pred ----------c-cc-----C-------cceEeeccCCChHHHhhhhccCCCCCCCCCeEEEeeeeecCCCCeeecCceee
Q psy1007 98 ----------H-GK-----C-------GVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCL 154 (445)
Q Consensus 98 ----------~-~~-----~-------giavIrisGp~a~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~ 154 (445)
+ .. . ..+++.++||.+..++++++.......++.... ...+ +. .-.
T Consensus 121 ~~~~~~~L~~~~~~~~~~~~~V~i~d~~~~~lal~GP~a~~vL~~l~~~dl~~l~~~~~~--~~~~--------~g-~~~ 189 (375)
T 1wsr_A 121 WEKDLALMQDKVRELQNQGRDVGLEVLDNALLALQGPTAAQVLQAGVADDLRKLPFMTSA--VMEV--------FG-VSG 189 (375)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEECCCEEEEEESTTHHHHHHTTCSSCGGGCCTTBEE--EEEE--------TT-EEE
T ss_pred HHHHHHHHHHhhhhhcCCCCeEEEEECCEEEEEEECcCHHHHHHhhcCcchhhCCccceE--EEEE--------CC-cce
Confidence 0 00 0 357899999999999999875332111111100 0011 11 000
Q ss_pred ecCCCCCcCCCceeEEEecCcHHHHHHHHHHHhcCCC-cccccCCcccchhhhcc
Q psy1007 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG-LRPAEPGEFSKRAFFNN 208 (445)
Q Consensus 155 ~f~~p~syTGEd~~Ei~~hg~~~v~~~i~~~l~~~~g-~r~a~~Gef~~ra~~n~ 208 (445)
.+.++.+||||+++||+|+.+.+ ..+|+.|... | +++++.+......+..|
T Consensus 190 ~~i~R~g~tGe~G~el~~~~~~a--~~l~~~L~~a-g~~~p~G~~a~d~lRieaG 241 (375)
T 1wsr_A 190 CRVTRCGYTGEDGVEISVPVAGA--VHLATAILKN-PEVKLAGLAARDSLRLEAG 241 (375)
T ss_dssp EEEESCCSSSSSEEEEEECHHHH--HHHHHHHHTS-TTEEECCHHHHHHHHHHTT
T ss_pred EEEEeCccCCCCeEEEEeeHHHH--HHHHHHHHhc-CCeEeCCHHHHHHHHHhCC
Confidence 35677899999999999997765 7899999987 6 77776554444333333
No 16
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.22 E-value=7.6e-12 Score=120.84 Aligned_cols=106 Identities=25% Similarity=0.338 Sum_probs=70.6
Q ss_pred CCeEEEeeeccccccCCChhHHHHHHHHHHHHHHHHhhccCcceeeeccccccccc-------ccC-cEEEEEcCCCCCh
Q psy1007 307 GIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRI-------RSG-IKSVIVGEPNVGK 378 (445)
Q Consensus 307 gi~~vIvl~k~e~~~Dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~-------~~~-~~v~lvG~~~vGK 378 (445)
+.+.+||+||+|+. +.. ..+.|.+.|++.+ +++ .+|+..+..+ ... ++++++|.|||||
T Consensus 46 ~k~~iivlNK~DL~----~~~-~~~~~~~~~~~~g-------~~v-~iSa~~~~gi~~L~~~l~~~~~~v~~vG~~~vGK 112 (262)
T 3cnl_A 46 RKETIILLNKVDIA----DEK-TTKKWVEFFKKQG-------KRV-ITTHKGEPRKVLLKKLSFDRLARVLIVGVPNTGK 112 (262)
T ss_dssp TSEEEEEEECGGGS----CHH-HHHHHHHHHHHTT-------CCE-EECCTTSCHHHHHHHHCCCTTCEEEEEESTTSSH
T ss_pred CCCcEEEEECccCC----CHH-HHHHHHHHHHHcC-------CeE-EEECCCCcCHHHHHHHHHHhhhheEEeCCCCCCH
Confidence 78999999997764 222 2346777777644 566 7788777433 233 5999999999999
Q ss_pred hHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCCC
Q psy1007 379 SSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428 (445)
Q Consensus 379 SsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~ 428 (445)
|||+|+|++.....++..+++|++... +.++ ..+.+|||||+.....
T Consensus 113 Sslin~l~~~~~~~~~~~~g~T~~~~~--~~~~-~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 113 STIINKLKGKRASSVGAQPGITKGIQW--FSLE-NGVKILDTPGILYKNI 159 (262)
T ss_dssp HHHHHHHHTTCC----------CCSCE--EECT-TSCEEESSCEECCCCC
T ss_pred HHHHHHHhcccccccCCCCCCccceEE--EEeC-CCEEEEECCCcccCcC
Confidence 999999999887677888898887653 3333 4568999999996543
No 17
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum}
Probab=99.21 E-value=2.1e-11 Score=122.84 Aligned_cols=157 Identities=15% Similarity=0.072 Sum_probs=114.9
Q ss_pred EEccCCC----CceEEEEEEecccHHHHHHHhcCCCCCCCCCCceeEEeeeecCCCCceecceEEEeecc----------
Q psy1007 32 ALSSGHG----KCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR---------- 97 (445)
Q Consensus 32 A~at~~g----~~ai~viRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~iD~~i~~~~~~---------- 97 (445)
|+.+..| .|-.++|+|+||||.++|+.+++ +|...++++++.|+.++|+. |.++||.+++....
T Consensus 31 avr~~~g~l~DlS~~g~i~v~G~DA~~fLq~l~t-ndv~~l~~g~~~y~~~ln~~-G~i~~D~~v~r~~d~~~lv~~a~~ 108 (355)
T 3ttg_A 31 IAHKKFGLFYPSVSRPSIFVEGEDRKNFLQGIAS-QDILKQDEKSLSYSFFLNPK-ARILFDAWCGNFEDKIALFPPAGT 108 (355)
T ss_dssp HHHHSCEEECCSSCCCCEEEESTTHHHHHHTTBS-SCCSSCCTTBEEEEEEECTT-CCEEEEEEEEEETTEEEEECCTTC
T ss_pred HHHhcCeEEEeCCCcEEEEEECCCHHHHHhhhhh-hccccCCCCCEEEEEEECCC-ceEEEEEEEEEECCEEEEEECccc
Confidence 5556666 67788999999999999999998 56677889999999999987 77999999887654
Q ss_pred ----------c-c----------cCcceEeeccCCChHHHhhhhccCCCCCCCCCeEEEeeeeecCCCCeeecCceeeec
Q psy1007 98 ----------H-G----------KCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWF 156 (445)
Q Consensus 98 ----------~-~----------~~giavIrisGp~a~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~~f 156 (445)
. . ....+++.++||.+..++++++..+... . .|.. ... +. ..+
T Consensus 109 ~~~~~~~L~~~~~~~~~V~i~d~s~~~~~lalqGP~a~~~l~~l~~~~l~~--~---~~~~----~~~------g~-~~~ 172 (355)
T 3ttg_A 109 REEFVNHLKKYLFFRTKAKITDMSDHFREIRLVGPETISVLLSLFDNNFSG--S---SFRM----LKN------GG-YVL 172 (355)
T ss_dssp HHHHHHHHHHTCCTTCCCEEEECGGGEEEEEEESTTHHHHHHHHSSSCCCS--S---EEEE----CTT------SC-EEE
T ss_pred HHHHHHHHHHhcccCCCeEEEECcCCEEEEEEECCcHHHHHHHhccCCCcc--C---ccee----ecc------Cc-EEE
Confidence 1 1 1245789999999999999987533211 1 1211 111 11 233
Q ss_pred C-CCC-CcCCC--ceeEEEecCcHHHHHHHHHHHhc----CCCcccccCCcccchhhhccc
Q psy1007 157 P-KPN-SFTGE--DCCEFQVHGSIAVINAILGALTK----LPGLRPAEPGEFSKRAFFNNK 209 (445)
Q Consensus 157 ~-~p~-syTGE--d~~Ei~~hg~~~v~~~i~~~l~~----~~g~r~a~~Gef~~ra~~n~k 209 (445)
. +++ ||||| +++||+++...+ ..+|++|.+ . |+++++.+.+....+..|.
T Consensus 173 ~~~r~GsytGE~e~G~el~~p~~~a--~~l~~~L~~aG~~~-g~~~~G~~a~d~lRiEaG~ 230 (355)
T 3ttg_A 173 IHPTSFQHNLDVGLQADLFIPIDQF--ETTQKSLEDFTSNK-GGVLLDESSYLAYLTEKGI 230 (355)
T ss_dssp ECCSBCGGGCBCCCEEEEEEEGGGH--HHHHHHHHHHHHHH-TCEECCHHHHHHHHHHTTC
T ss_pred EecCcccccCccCCeEEEEEeHHHH--HHHHHHHHhhhhhc-CCccCCHHHHHHHHHHCCC
Confidence 4 566 49997 999999998876 678999886 5 7888877665555555553
No 18
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis}
Probab=99.21 E-value=2.4e-11 Score=122.80 Aligned_cols=162 Identities=20% Similarity=0.216 Sum_probs=113.7
Q ss_pred EEccCCC---CceEEEEEEecccHHHHHHHhcCCCCCCCCCCceeEEeeeecCCCCceecceEEEeecc-----------
Q psy1007 32 ALSSGHG---KCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR----------- 97 (445)
Q Consensus 32 A~at~~g---~~ai~viRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~iD~~i~~~~~~----------- 97 (445)
|+.+..| .|-.++|+|+||||.++|+.+++ +|...++++++.|+.++|+. |.++||.++++..+
T Consensus 42 a~r~~~gl~dls~~~~i~v~G~da~~fLq~l~t-~dv~~l~~g~~~y~~~ln~~-G~i~~d~~v~r~~~d~~ll~~~a~~ 119 (365)
T 1yx2_A 42 AVRTAAGLFDVSHMGEVEVSGNDSLSFLQRLMT-NDVSALTPGRAQYTAMCYPD-GGTVDDLLIYQKGENRYLLVINASN 119 (365)
T ss_dssp HHHHSEEEEECTTSEEEEEESTTHHHHHHHHBS-SCGGGCCTTBEEEEEEECTT-SCEEEEEEEEEEETTEEEEEECGGG
T ss_pred HHHhCcEEEECCCeEEEEEECCCHHHHHHHhcc-cccccCCCCCEEEEEEECCC-CeEEEEEEEEEEeCCEEEEEECccc
Confidence 4444444 56678999999999999999998 55667789999999999986 78999999998853
Q ss_pred -------------------cccCcceEeeccCCChHHHhhhhccCCCCCCCCCeEEEe-eeeecCCCCeeecCceeeecC
Q psy1007 98 -------------------HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASL-RNIVDPVSEVVLDEGLCLWFP 157 (445)
Q Consensus 98 -------------------~~~~giavIrisGp~a~~il~~l~~~~~~~~~~~rra~~-~~~~d~~~~~~~d~~~~~~f~ 157 (445)
+.....+++.++||.+..++++++...... .+...+. ...++ + .-.+.
T Consensus 120 ~~~~~~~L~~~~~~~V~i~d~s~~~~~lal~Gp~a~~~L~~l~~~dl~~--~~~~~~~~~~~~~---g-------~~~~i 187 (365)
T 1yx2_A 120 IDKDLAWMKEHAAGDVQIDNQSDQIALLAVQGPKAEAILKNLTDADVSA--LKPFAFIDEADIS---G-------RKALI 187 (365)
T ss_dssp HHHHHHHHHHTCCSSCEEEECTTTEEEEEEESTTHHHHHHTTBSSCGGG--CCTTBEEEEEEET---T-------EEEEE
T ss_pred HHHHHHHHHhhccCCeEEEECcCCEEEEEEECcCHHHHHHHhhCCChhh--CCcceeEEEEEEC---C-------eEEEE
Confidence 112357899999999999999987533211 1111111 11111 1 11345
Q ss_pred CCCCcCCCceeEEEecCcHHHHHHHHHHHhcCC---CcccccCCcccchhhhccc
Q psy1007 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLP---GLRPAEPGEFSKRAFFNNK 209 (445)
Q Consensus 158 ~p~syTGEd~~Ei~~hg~~~v~~~i~~~l~~~~---g~r~a~~Gef~~ra~~n~k 209 (445)
++++||||+++||+|+.+.+ ..+|+.|.... |+++++.+......+..|.
T Consensus 188 ~R~g~tge~G~el~~~~~~a--~~l~~~L~~ag~~~g~~~~g~~a~~~lRieaG~ 240 (365)
T 1yx2_A 188 SRTGYTGEDGYEIYCRSDDA--MHIWKKIIDAGDAYGLIPCGLGARDTLRFEANI 240 (365)
T ss_dssp ESCCSSSSSEEEEEEEGGGH--HHHHHHHHHHHGGGTEEEECHHHHHHHHHHTTC
T ss_pred EeCcccCCCEEEEEEcHHHH--HHHHHHHHhcchhcCceeCCHHHHHHhHHhcCC
Confidence 67899999999999998876 66898887541 3777766655544444443
No 19
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.20 E-value=2.7e-11 Score=119.30 Aligned_cols=109 Identities=21% Similarity=0.284 Sum_probs=72.8
Q ss_pred ccCCeEEEeeeccccccCCChhH--HHHHHHHHHHHHHHHhhccCcceeeeccccccccc------ccCcEEEEEcCCCC
Q psy1007 305 RSGIKSVICLASVEAYIDFSEDE--IIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRI------RSGIKSVIVGEPNV 376 (445)
Q Consensus 305 ~~gi~~vIvl~k~e~~~Dl~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~------~~~~~v~lvG~~~v 376 (445)
..+++++||+||+|+. ++. ...+++.+.|++.+ |+++.+|++++..+ ..|..++++|++|+
T Consensus 108 ~~~~~~ilV~NK~DL~----~~~~v~~~~~~~~~~~~~g-------~~~~~~SA~~g~gi~~L~~~l~G~i~~l~G~sG~ 176 (302)
T 2yv5_A 108 YFKVEPVIVFNKIDLL----NEEEKKELERWISIYRDAG-------YDVLKVSAKTGEGIDELVDYLEGFICILAGPSGV 176 (302)
T ss_dssp HTTCEEEEEECCGGGC----CHHHHHHHHHHHHHHHHTT-------CEEEECCTTTCTTHHHHHHHTTTCEEEEECSTTS
T ss_pred hCCCCEEEEEEcccCC----CccccHHHHHHHHHHHHCC-------CeEEEEECCCCCCHHHHHhhccCcEEEEECCCCC
Confidence 4689999999997764 222 11335666676654 78999999988654 36788999999999
Q ss_pred ChhHHhhhhccccceeeecCC-------CccceEEEEEEEECCeeEEEEECCCCCcCCC
Q psy1007 377 GKSSLMNFLCQKQISIVTSIP-------GTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428 (445)
Q Consensus 377 GKSsLln~l~~~~~~~vs~~~-------~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~ 428 (445)
|||||+|.|+ ......+... .+|+.... +.... .-.++||||+..++.
T Consensus 177 GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~--~~~~~-~g~v~d~pg~~~~~l 231 (302)
T 2yv5_A 177 GKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRL--IPFGK-GSFVGDTPGFSKVEA 231 (302)
T ss_dssp SHHHHHHHHH-SCCCCCSCC---------CCCCEEE--EEETT-TEEEESSCCCSSCCG
T ss_pred CHHHHHHHHH-HhhCcccccccccCCCCCceeeEEE--EEcCC-CcEEEECcCcCcCcc
Confidence 9999999998 5432222222 24444332 22211 226999999986654
No 20
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.18 E-value=5.6e-11 Score=106.48 Aligned_cols=77 Identities=49% Similarity=0.750 Sum_probs=62.5
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCCCCcccHHHHHHHHH
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKN 441 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~~~~e~~~i~~~~~ 441 (445)
++.+++++|++|||||||+|+|++.....++..+++|++.....+.+++.++.+|||||+++. ...++..++.+++.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~-~~~~~~~~~~~~~~ 79 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA-SDEVERIGIERAWQ 79 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCC-SSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccc-hhHHHHHHHHHHHH
Confidence 568999999999999999999998876556788899999988889999989999999999843 34455555555443
No 21
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.16 E-value=1.9e-11 Score=126.36 Aligned_cols=121 Identities=26% Similarity=0.393 Sum_probs=75.7
Q ss_pred ccCCeEEEeeeccccccCCChhHHHHHHHHHHHHHHHHhhccCcceeeeccccccccc--------------------cc
Q psy1007 305 RSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRI--------------------RS 364 (445)
Q Consensus 305 ~~gi~~vIvl~k~e~~~Dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~--------------------~~ 364 (445)
+.++++++|.||+|+..+-. ...+.| +.+ .-+++.+|+..+..+ ..
T Consensus 109 ~~~~pvilv~NK~D~~~~~~-------~~~~~~-~lg------~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~ 174 (436)
T 2hjg_A 109 RTKKPVVLAVNKLDNTEMRA-------NIYDFY-SLG------FGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEE 174 (436)
T ss_dssp TCCSCEEEEEECCCC------------CCCSSG-GGS------SCCCEECBTTTTBTHHHHHHHHHHTGGGCCSSCCCTT
T ss_pred HcCCCEEEEEECccCccchh-------hHHHHH-HcC------CCCeEEEeCcCCCChHHHHHHHHHhcCcccccccccc
Confidence 46889999999988642210 000111 111 114566677766322 12
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCCC--CcccHHHHHHH
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS--DIIETEGNLLE 439 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~--~~~e~~~i~~~ 439 (445)
.++++++|.||||||||+|+|++..+..+++.++||++.....+.+++..+.+|||||+++... +.+|.....++
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHH
Confidence 3799999999999999999999998877789999999998888899999999999999975543 23455544433
No 22
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.16 E-value=2.7e-10 Score=115.01 Aligned_cols=63 Identities=32% Similarity=0.294 Sum_probs=44.0
Q ss_pred ccccCcE-EEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCC
Q psy1007 361 RIRSGIK-SVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424 (445)
Q Consensus 361 ~~~~~~~-v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~ 424 (445)
+.+.+++ ++++|++|+|||||+|+|++... .+++.+++|+|+....+.++|.++.+|||||+.
T Consensus 174 r~~~~~~~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i 237 (364)
T 2qtf_A 174 NKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFI 237 (364)
T ss_dssp -----CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBC
T ss_pred hhhcCCcEEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCch
Confidence 3455676 89999999999999999999875 457888999999999999999999999999985
No 23
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=99.08 E-value=1.9e-10 Score=129.95 Aligned_cols=166 Identities=13% Similarity=0.092 Sum_probs=115.6
Q ss_pred cEEEEccCCC---CceEEEEEEecccHHHHHHHhcCCCCCCCCCCceeEEeeeecCCCCceecceEEEeecc--------
Q psy1007 29 TIFALSSGHG---KCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR-------- 97 (445)
Q Consensus 29 tI~A~at~~g---~~ai~viRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~iD~~i~~~~~~-------- 97 (445)
..-|+.+..| .|-.++|+|+||||.++|+.+++ +|...++++++.|+.++|+. |.++||.+++...+
T Consensus 616 E~~avr~~~gl~D~S~~g~i~v~G~da~~fL~~l~t-~dv~~l~~g~~~y~~~l~~~-G~i~~D~~v~r~~~~~~~l~~~ 693 (965)
T 2gag_A 616 ESKAVRDSVGMLDATTLGKIEIRGKDAAEFLNRIYT-NGYTKLKVGMGRYGVMCKAD-GMIFDDGVTLRLAEDRFLLHTT 693 (965)
T ss_dssp HHHHHHHSCEEEECTTSEEEEEESTTHHHHHHHHBS-SCCTTCCTTBEEEEEEECTT-SCEEEEEEEEEEETTEEEEEEC
T ss_pred HHHHHHhCeEEEeCCceEEEEEeCcCHHHHHHHhhc-cCCCcCCCCCEEEEEEECCC-CcEEEEEEEEEEeCCEEEEEEC
Confidence 3445555555 67789999999999999999999 56677789999999999986 77999999998764
Q ss_pred ---------------c------------ccCcceEeeccCCChHHHhhhhc-cCCCCCCCCCeEEEeeeee-cCCCCeee
Q psy1007 98 ---------------H------------GKCGVSVIRVSGPDTLNALKSMA-CYPDQKVSKPRYASLRNIV-DPVSEVVL 148 (445)
Q Consensus 98 ---------------~------------~~~giavIrisGp~a~~il~~l~-~~~~~~~~~~rra~~~~~~-d~~~~~~~ 148 (445)
. .....+++.++||.+..++++++ ..+..+..++...+....+ + +
T Consensus 694 ~~~~~~~~~~l~~~~~~~~~~~~V~i~d~s~~~~~lal~GP~a~~~l~~~~~~~dl~~~~~~~~~~~~~~~~~---g--- 767 (965)
T 2gag_A 694 TGGAADVLDWLEEWLQTEWPDLDVTCTSVTEQLATVAVVGPRSRDVIAKLASTVDVSNEGFKFMAFKDVVLDS---G--- 767 (965)
T ss_dssp TTTHHHHHHHHHHHHHHTCTTSCCEEEECTTTEEEEEEESTTHHHHHHHHCTTSCCSTTTSCTTBEEEEECTT---S---
T ss_pred cccHHHHHHHHHHHHHhcCCCCcEEEEEccCCEEEEEEECcCHHHHHHHhhCCCCCccccCCCceeEEEEEcC---C---
Confidence 0 01235789999999999999997 2122111122111111111 1 1
Q ss_pred cCceeeecCCCCCcCCCceeEEEecCcHHHHHHHHHHHhcC---CCcccccCCcccchhhhcc
Q psy1007 149 DEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL---PGLRPAEPGEFSKRAFFNN 208 (445)
Q Consensus 149 d~~~~~~f~~p~syTGEd~~Ei~~hg~~~v~~~i~~~l~~~---~g~r~a~~Gef~~ra~~n~ 208 (445)
.-.+..+.+||||+++||+++.+.+ ..+|+.|... -|++|++.+......+..|
T Consensus 768 ----~~~~~~R~~~tGe~G~ei~~~~~~~--~~l~~~L~~ag~~~g~~p~G~~a~~~lRiE~G 824 (965)
T 2gag_A 768 ----IEARISRISFSGELAFEIAVPAWHG--LRVWEDVYAAGEEFNITPYGTETMHVLRAEKG 824 (965)
T ss_dssp ----CEEEEECCCSSSSCEEEEEEEGGGH--HHHHHHHHHHHGGGTCEECCHHHHHHHHHHTT
T ss_pred ----CEEEEEeCCccCCCEEEEEEeHHHH--HHHHHHHHhcchhcCceeCCHHHHHHHHHhCC
Confidence 1245678899999999999998876 6799998754 0467776554444444333
No 24
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.06 E-value=2.1e-10 Score=119.16 Aligned_cols=77 Identities=32% Similarity=0.512 Sum_probs=56.4
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCCC--CcccHHHHHHHH
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS--DIIETEGNLLEK 440 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~--~~~e~~~i~~~~ 440 (445)
..++++++|.+|||||||+|+|++.....++..++||++.....+.+++..+.+|||||+++... ...|.....++.
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 35799999999999999999999987777889999999998888889999999999999875331 224555444443
No 25
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.05 E-value=2.1e-10 Score=118.60 Aligned_cols=60 Identities=50% Similarity=0.796 Sum_probs=49.0
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
++++++|+||||||||+|+|++.....+++.++||++.....+.++|..+.+|||||++.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~ 240 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 240 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC--
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCcc
Confidence 699999999999999999999998877899999999998888999999999999999964
No 26
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1
Probab=99.04 E-value=3.1e-10 Score=116.08 Aligned_cols=161 Identities=16% Similarity=0.184 Sum_probs=110.3
Q ss_pred EEccCCC---CceEEEEEEecccHHHHHHHhcCCCCCCCCCCceeEEeeeecCCCCceecceEEEeecc-----------
Q psy1007 32 ALSSGHG---KCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR----------- 97 (445)
Q Consensus 32 A~at~~g---~~ai~viRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~iD~~i~~~~~~----------- 97 (445)
|+.+..| .|-.++|+|+||||.++|+.+++ +|...++++++.|+.++|+. |.++||.++++..+
T Consensus 42 a~r~~~gl~dls~~~~i~v~G~Da~~fLq~l~t-~dv~~l~~g~~~yt~~ln~~-G~i~~D~~v~r~~~d~~ll~~~a~~ 119 (401)
T 1v5v_A 42 AVRNAVGIFDVSHMGEIVFRGKDALKFLQYVTT-NDISKPPAISGTYTLVLNER-GAIKDETLVFNMGNNEYLMICDSDA 119 (401)
T ss_dssp HHHHSCEEEECTTSEEEEEESTTHHHHHHHHSS-SCTTSSCSSEEEEEEEECTT-SCEEEEEEEEEEETTEEEEEECTTT
T ss_pred HHHhCEEEEECCCcEEEEEECCCHHHHHHHhhc-cccCcCCCCCEEEEEEECCC-CcEEEEEEEEEecCCEEEEEECccc
Confidence 4444444 56678999999999999999998 56677789999999999986 77999999998754
Q ss_pred -------c----------cc---------CcceEeeccCCChHHHhhhhccCCCCCCCCCeEEEeeeeecCCCCeeecCc
Q psy1007 98 -------H----------GK---------CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEG 151 (445)
Q Consensus 98 -------~----------~~---------~giavIrisGp~a~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~~~d~~ 151 (445)
. .. ...+++.++||.+..++++++..+....++.. +....++ +
T Consensus 120 ~~~~~~~L~~~~~~~~~~~~~~V~i~d~s~~~~~lal~GP~a~~vL~~l~~~dl~~~~~~~--~~~~~~~---g------ 188 (401)
T 1v5v_A 120 FEKLYAWFTYLKRTIEQFTKLDLEIELKTYDIAMFAVQGPKARDLAKDLFGIDINEMWWFQ--ARWVELD---G------ 188 (401)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCCEEEECTTTEEEEEEESTTHHHHHHHHHSCCGGGSCTTB--EEEEEET---T------
T ss_pred HHHHHHHHHHHHHhhhccCCCcEEEEECcCCEEEEEEECccHHHHHHHhhCCCchhcCccc--eEEEEeC---C------
Confidence 1 11 13578999999999999998753321111111 1111111 1
Q ss_pred eeeecCCCCCcCCCceeEEEec--------------CcHHHHHHHHHHHhcCC---CcccccCCcccchhhhcc
Q psy1007 152 LCLWFPKPNSFTGEDCCEFQVH--------------GSIAVINAILGALTKLP---GLRPAEPGEFSKRAFFNN 208 (445)
Q Consensus 152 ~~~~f~~p~syTGEd~~Ei~~h--------------g~~~v~~~i~~~l~~~~---g~r~a~~Gef~~ra~~n~ 208 (445)
.-.+..+.+||||+++||+|+ .+.+ ..+|+.|.... |+++++++.+....+..|
T Consensus 189 -~~~~i~R~g~tge~G~ei~~~~~~~~~~~~~~~~~~~~a--~~l~~~L~~ag~~~g~~p~g~~a~~~lRieaG 259 (401)
T 1v5v_A 189 -IKMLLSRSGYTGENGFEVYIEDANPYHPDESKRGEPEKA--LHVWERILEEGKKYGIKPCGLGARDTLRLEAG 259 (401)
T ss_dssp -EEEEEECCCSSSSCEEEEEEECCCTTCSSGGGCCCCHHH--HHHHHHHHHHHGGGTCEEECHHHHHHHHHHHT
T ss_pred -eEEEEEeCCCCCCCeEEEEEeccccccccccccccHHHH--HHHHHHHHhhhhccCceecChhHhhHHHHhcC
Confidence 113446789999999999999 4444 67888886431 567776555444444444
No 27
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=99.01 E-value=4.1e-10 Score=125.23 Aligned_cols=165 Identities=16% Similarity=0.154 Sum_probs=114.2
Q ss_pred cEEEEccCCC---CceEEEEEEecccHHHHHHHhcCCCCCCCCCCceeEEeeeecCCCCceecceEEEeecc--------
Q psy1007 29 TIFALSSGHG---KCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR-------- 97 (445)
Q Consensus 29 tI~A~at~~g---~~ai~viRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~iD~~i~~~~~~-------- 97 (445)
..-|+.+..| .|-.++|+|+||||.++|+.+++ +|. ..+++++.|+.++|+. |.++||.+++...+
T Consensus 492 E~~a~r~~~gl~d~s~~~~~~v~G~da~~fL~~~~t-~dv-~l~~g~~~y~~~l~~~-G~i~~d~~v~~~~~~~~~l~~~ 568 (830)
T 1pj5_A 492 EAWKTRTAVAMYDMTPLKRLEVSGPGALKLLQELTT-ADL-AKKPGAVTYTLLLDHA-GGVRSDITVARLSEDTFQLGAN 568 (830)
T ss_dssp HHHHHHHSCEEEECTTSCEEEEESTTHHHHHHHHBS-SCC-CSCTTBEEEEEEECTT-SCEEEEEEEEEEETTEEEEECS
T ss_pred HHHHHHhCeEEEEcCcEEEEEEECcCHHHHHHHhcc-ccc-cCCCCcEEEeEEECCC-CEEEEeEEEEEEeCCEEEEEeC
Confidence 3445556655 67778999999999999999999 555 6689999999999986 77999999987644
Q ss_pred -------------cc-------c--------CcceEeeccCCChHHHhhhhccCCCCCCCCCeEEEeeeeecCCCCeeec
Q psy1007 98 -------------HG-------K--------CGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLD 149 (445)
Q Consensus 98 -------------~~-------~--------~giavIrisGp~a~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~~~d 149 (445)
.. . ...+++.+|||.+..++++++.....+...+...+....++ +
T Consensus 569 ~~~~~~~l~~~~~~~~~~~~~~~~v~i~d~s~~~~~~~l~Gp~a~~~l~~~~~~dl~~~~~~~~~~~~~~~~---g---- 641 (830)
T 1pj5_A 569 GNIDTAYFERAARHQTQSGSATDWVQVRDTTGGTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIG---G---- 641 (830)
T ss_dssp SHHHHHHHHHHHHHHHHHSCTTCCCEEEECGGGEEEEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEET---T----
T ss_pred HHHHHHHHHHHhhhcccccCCCCeEEEEEccCCEEEEEEECcCHHHHHHHhcCcCCccccCCCceEEEEEEC---C----
Confidence 11 1 13578999999999999998753321101111111111111 1
Q ss_pred CceeeecCCCCCcCCCceeEEEecCcHHHHHHHHHHHhcC---CCcccccCCcccchhhhcc
Q psy1007 150 EGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL---PGLRPAEPGEFSKRAFFNN 208 (445)
Q Consensus 150 ~~~~~~f~~p~syTGEd~~Ei~~hg~~~v~~~i~~~l~~~---~g~r~a~~Gef~~ra~~n~ 208 (445)
.-.+.++++|||||++||+|+.+.+ ..+|+.|... .|+++++.+....-.+..|
T Consensus 642 ---~~~~~~r~~~tge~g~ei~~~~~~~--~~l~~~l~~ag~~~~~~~~g~~a~~~lRle~G 698 (830)
T 1pj5_A 642 ---IPVTAMRLSYVGELGWELYTSADNG--QRLWDALWQAGQPFGVIAAGRAAFSSLRLEKG 698 (830)
T ss_dssp ---EEEEEECCCTTSSSEEEEEEEHHHH--HHHHHHHHHHHGGGTCEEECHHHHHHHHHHTT
T ss_pred ---EEEEEEECcccCCCcEEEEecHHHH--HHHHHHHHhhhhhcCCEEehhhhhhhhhhhcC
Confidence 1245778899999999999988765 6799998752 1677776655444444433
No 28
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.99 E-value=4.4e-10 Score=116.15 Aligned_cols=60 Identities=40% Similarity=0.588 Sum_probs=43.2
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
+|+++|.||||||||+|+|++...+.+++.+++|++.....+.++|..+.+|||||+...
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~ 62 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 62 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCcccc
Confidence 689999999999999999999887778899999999999999999999999999999854
No 29
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.98 E-value=1.1e-09 Score=107.71 Aligned_cols=61 Identities=36% Similarity=0.527 Sum_probs=54.4
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
.+++++|.||||||||+|+|++.++..++..++||++.....+..++.++.+|||||+.+.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~ 68 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 68 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccch
Confidence 3699999999999999999999998877888999999887777778889999999999843
No 30
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.93 E-value=1.8e-09 Score=95.63 Aligned_cols=61 Identities=28% Similarity=0.503 Sum_probs=48.3
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT 427 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~ 427 (445)
++++++|++|||||||+|+|++..+. ++..+++|.+.....+.+++..+.+|||||+.++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 64 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 64 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSS-CC-----CCCCCEEEEEETTEEEEEEECCCCSCSS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCee-ccCCCCcceeeeEEEEEECCcEEEEEECCCcccCC
Confidence 68999999999999999999987653 46677888888777888888899999999998654
No 31
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.92 E-value=1.5e-10 Score=120.93 Aligned_cols=155 Identities=16% Similarity=0.172 Sum_probs=118.9
Q ss_pred eecceEEEeecc-cccCcceEeeccCCChHHHhhhhcc-------CCCCCCCCCeEEEeeeeecCCCCeeecCceeeecC
Q psy1007 86 VLDEGLCLWFPR-HGKCGVSVIRVSGPDTLNALKSMAC-------YPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157 (445)
Q Consensus 86 ~iD~~i~~~~~~-~~~~giavIrisGp~a~~il~~l~~-------~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~~f~ 157 (445)
+||+++++||++ ++++++++|+++|+++..+++.++. |.++||++++|+|+||++|++|+|
T Consensus 88 ~iDe~~v~~~~~p~Sft~Ed~ve~~~hGg~~v~~~~l~~l~~~g~r~A~~Geft~raf~nGk~Dl~qaE----------- 156 (482)
T 1xzp_A 88 DVDEVVVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKSGARMAEPGEFTKRAFLNGKMDLTSAE----------- 156 (482)
T ss_dssp CCCEEEEEEECTTSSSSSSCEEEEEECSCHHHHHHHHHHHHTTTCEECCTTHHHHHHHHTTSSCHHHHH-----------
T ss_pred eeeEEEEEEEeCCCcCCCCCEeeecCcCcHHHHHHHHHHHHHcCCEeCCCCCcCCcCCCcCCcCHHHHH-----------
Confidence 589999999999 7999999999999999999887643 778999999999999999987655
Q ss_pred CCCCcCCCceeEEEecCcHHHHHHHHHHHhcCCCcccccCCcccchhhhccccchhhhhhHHHHHHcccHHHHHHHHHhc
Q psy1007 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQM 237 (445)
Q Consensus 158 ~p~syTGEd~~Ei~~hg~~~v~~~i~~~l~~~~g~r~a~~Gef~~ra~~n~k~dl~~ae~~~~li~A~~~~~~~~al~~~ 237 (445)
.+ +||+++++...+..|.. ++++.+.+.
T Consensus 157 ------------------------------~i--------------------~dli~a~t~~~~~~a~~--~l~g~l~~~ 184 (482)
T 1xzp_A 157 ------------------------------AV--------------------RDLIEAKSETSLKLSLR--NLKGGLRDF 184 (482)
T ss_dssp ------------------------------HH--------------------HHHHHCCSHHHHHHHHH--HHTTHHHHH
T ss_pred ------------------------------HH--------------------HHHHhhccHHHHHHHHH--hcchhHhHH
Confidence 33 78888877777777755 888999999
Q ss_pred cchHHHHHHHHHHHHHHHHhccccccccCCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCeEEEee
Q psy1007 238 KGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICL 314 (445)
Q Consensus 238 ~g~l~~~l~~~~~~l~~~~a~iE~~Idfse~e~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~g~~~~~gi~~vIvl 314 (445)
...+++.+.+....++..+++.|. +++.+.+ + ...+..+..++. .+.+... .+..+++|++++|+=
T Consensus 185 ~~~~r~~l~~~~~~ie~~idf~ee-i~~~~~~-i-~~~~~~l~~eL~----~l~~~~~----~~~~~r~~~kV~ivG 250 (482)
T 1xzp_A 185 VDSLRRELIEVLAEIRVELDYPDE-IETNTGE-V-VTRLERIKEKLT----EELKKAD----AGILLNRGLRMVIVG 250 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTT-CCCCHHH-H-HHHHHHHHHHHH----HHHHHHH----HHHHHHHCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhhhcCCCCcc-ccchHHH-H-HHHHHHHHHHHH----HHHHhhh----hhhhccCCCEEEEEC
Confidence 999999999999999999999986 5543222 1 122333333344 3333445 455678898888763
No 32
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.88 E-value=3.5e-09 Score=95.08 Aligned_cols=62 Identities=27% Similarity=0.497 Sum_probs=54.4
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT 427 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~ 427 (445)
.++++++|++|||||||+|+|++..+. ++..+++|.+.....+.+++..+.+|||||+.++.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 68 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 68 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCeeccceEEEEEeCCcEEEEEECCCcCccc
Confidence 478999999999999999999987653 47788899998888898999999999999998653
No 33
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A
Probab=98.87 E-value=7.5e-09 Score=103.40 Aligned_cols=138 Identities=9% Similarity=-0.003 Sum_probs=98.2
Q ss_pred CceEEEEEEecccHHHHHHHhcCCCCCCCCCCceeEEeeeecCCCCceecceEEEeecc---------------------
Q psy1007 39 KCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPR--------------------- 97 (445)
Q Consensus 39 ~~ai~viRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~iD~~i~~~~~~--------------------- 97 (445)
.|--++|+|+||||.++|+.+++ +|...++++++.|+.++|+. |.++||.+++....
T Consensus 36 lS~~~~i~v~G~DA~~fLq~l~t-ndv~~l~~g~~~yt~~ln~~-G~i~~D~~v~r~~~~~~lv~~a~~~~~~~~~L~~~ 113 (338)
T 1vly_A 36 LDDWALATITGADSEKYMQGQVT-ADVSQMAEDQHLLAAHCDAK-GKMWSNLRLFRDGDGFAWIERRSVREPQLTELKKY 113 (338)
T ss_dssp CTTEEEEEEESTTHHHHHHTTBS-SCGGGCCTTCEEEEEEECTT-SCEEEEEEEEEETTEEEEEEEHHHHHHHHHHHHTT
T ss_pred CCCcEEEEEECCCHHHHhcchhh-hcccccCCCceEEEEEECCC-CCEEEEEEEEEeCCcEEEEecchhhHHHHHHHHHh
Confidence 56789999999999999999998 56677789999999999987 77999999987654
Q ss_pred --------cccCcceEeeccCCChHHHhhhhccCCCCCCCCCeEEEeeeeecCCCCeeecCceeeecCCCCCcCCCceeE
Q psy1007 98 --------HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCE 169 (445)
Q Consensus 98 --------~~~~giavIrisGp~a~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~~f~~p~syTGEd~~E 169 (445)
......+++.++||.+..++++++.... . .... |. ..+ +. -+ .+.+ |||+++|
T Consensus 114 ~~~~~V~i~~~~~~~~lal~Gp~a~~~l~~~~~~~~--~-~~~~-~~--~~~---g~-----~~-~~~~----tge~G~e 174 (338)
T 1vly_A 114 AVFSKVTIAPDDERVLLGVAGFQARAALANLFSELP--S-KEKQ-VV--KEG---AT-----TL-LWFE----HPAERFL 174 (338)
T ss_dssp CSSSSCEEEEECSSEEEEEESTTHHHHHHTTSSCCC--B-TTBC-EE--EET---TE-----EE-EEEC----SSSCEEE
T ss_pred hhhcceEEEEcCceEEEEEECCcHHHHHHhhcccCC--C-cccc-ee--ecC---Ce-----EE-EEec----CCCCcEE
Confidence 0113468899999999999999864211 0 1111 21 011 11 11 1222 9999999
Q ss_pred EEecCcHHHHHHHHHHHhcCCCcccccCCccc
Q psy1007 170 FQVHGSIAVINAILGALTKLPGLRPAEPGEFS 201 (445)
Q Consensus 170 i~~hg~~~v~~~i~~~l~~~~g~r~a~~Gef~ 201 (445)
|+++...+ ..+|+.|.+ ++++++.+.+.
T Consensus 175 l~~~~~~~--~~l~~~L~~--~~~~~g~~a~~ 202 (338)
T 1vly_A 175 IVTDEATA--NMLTDKLRG--EAELNNSQQWL 202 (338)
T ss_dssp EEECHHHH--HHHHHHHBT--TBEEECHHHHH
T ss_pred EEechHHH--HHHHHHhhh--cCccCCHHHHH
Confidence 99996555 679999876 35666544433
No 34
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.87 E-value=3e-09 Score=103.01 Aligned_cols=62 Identities=27% Similarity=0.367 Sum_probs=56.2
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT 427 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~ 427 (445)
.++++++|.+|+|||||+|+|++... .+++.+++|.+.....+..++.++.+|||||+.++.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccc
Confidence 47899999999999999999999884 678999999999999999888899999999998665
No 35
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.87 E-value=5.6e-09 Score=102.54 Aligned_cols=122 Identities=22% Similarity=0.285 Sum_probs=74.4
Q ss_pred cCCeEEEeeeccccccCCChhHHH--HHHHHHHHHHHHHhhccCcceeeecccccccccc------cCcEEEEEcCCCCC
Q psy1007 306 SGIKSVICLASVEAYIDFSEDEII--EDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIR------SGIKSVIVGEPNVG 377 (445)
Q Consensus 306 ~gi~~vIvl~k~e~~~Dl~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~------~~~~v~lvG~~~vG 377 (445)
.+++++||.||+|+. ++... .+++.+.|. .. ++++.+|++++..+. .+..++++|++|+|
T Consensus 114 ~~~piilv~NK~DL~----~~~~v~~~~~~~~~~~-------~~-~~~~~~SAktg~gv~~lf~~l~geiv~l~G~sG~G 181 (301)
T 1u0l_A 114 NELETVMVINKMDLY----DEDDLRKVRELEEIYS-------GL-YPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVG 181 (301)
T ss_dssp TTCEEEEEECCGGGC----CHHHHHHHHHHHHHHT-------TT-SCEEECCTTTCTTHHHHHHHHSSSEEEEECSTTSS
T ss_pred CCCCEEEEEeHHHcC----CchhHHHHHHHHHHHh-------hh-CcEEEEECCCCcCHHHHHHHhcCCeEEEECCCCCc
Confidence 579999999997753 22221 112333332 12 678888999886543 67789999999999
Q ss_pred hhHHhhhhccccceeeecCC-------CccceEEEEEEEECCeeEEEEECCCCCcCCCCcccHHHHHHHHHh
Q psy1007 378 KSSLMNFLCQKQISIVTSIP-------GTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEKNN 442 (445)
Q Consensus 378 KSsLln~l~~~~~~~vs~~~-------~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~~~~e~~~i~~~~~~ 442 (445)
||||+|.+.+......+... .+|+.... +... ....++||||++.......+..++...|++
T Consensus 182 KSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~--~~~~-~~g~v~q~p~~~~~~~~~~~~~~~~~l~~~ 250 (301)
T 1u0l_A 182 KSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQL--LKFD-FGGYVVDTPGFANLEINDIEPEELKHYFKE 250 (301)
T ss_dssp HHHHHHHHSTTCCCC-------------CCCSCCE--EECT-TSCEEESSCSSTTCCCCSSCHHHHGGGSTT
T ss_pred HHHHHHHhcccccccccceecccCCCCCceeeeEE--EEcC-CCCEEEECcCCCccCCCcCCHHHHHHHHHh
Confidence 99999999986543322222 23333322 2222 112699999998766555555555444443
No 36
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.86 E-value=6.7e-09 Score=99.66 Aligned_cols=62 Identities=24% Similarity=0.418 Sum_probs=55.1
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCCC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~ 428 (445)
.+|+++|.+|||||||+|+|++... .++..+++|.+.....+.+++..+.+|||||+.++..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~-~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~ 63 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVA 63 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSE-EEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-CccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccc
Confidence 3789999999999999999999874 4688999999999999999999999999999986643
No 37
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.85 E-value=7e-09 Score=99.60 Aligned_cols=64 Identities=33% Similarity=0.459 Sum_probs=56.5
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCCCC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~~ 429 (445)
.++++++|++|||||||+|+|++..+. ++..+++|.+.....+..++..+.+|||||+.++...
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 68 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYS 68 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCC
Confidence 478999999999999999999998764 6888999999999888888899999999999866543
No 38
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.85 E-value=2.9e-09 Score=101.48 Aligned_cols=62 Identities=19% Similarity=0.155 Sum_probs=49.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCC-CccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP-GTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~-~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
+.++|+++|.+|||||||+|+|++......+..+ ++|+++....+.+++..+.+|||||+.+
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~ 82 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFS 82 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCC
Confidence 4589999999999999999999998876533333 4888888888889999999999999963
No 39
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.85 E-value=5.1e-09 Score=100.92 Aligned_cols=65 Identities=26% Similarity=0.379 Sum_probs=57.6
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCCCCc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~~~ 430 (445)
-++++++|++|+|||||+|+|++... .++..+++|.+.....+.+++..+.+|||||+.++....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 67 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHS 67 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCC
Confidence 36899999999999999999999876 568899999999999999999999999999999765543
No 40
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.84 E-value=3e-09 Score=102.14 Aligned_cols=64 Identities=25% Similarity=0.423 Sum_probs=55.8
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT 427 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~ 427 (445)
+.++|+++|.+|+|||||+|+|++.....++..+++|.+.....+.+++..+.||||||+.++.
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~ 98 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAG 98 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcc
Confidence 3489999999999999999999998876667888889888888888999999999999998653
No 41
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.83 E-value=2.2e-09 Score=108.61 Aligned_cols=63 Identities=29% Similarity=0.343 Sum_probs=56.6
Q ss_pred ccC-cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 363 RSG-IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 363 ~~~-~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
++| .+|+++|.||||||||+|+|++.. ..++++|+||++.....+.+++.++.++||||+.+.
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~ 132 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDG 132 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCC
Confidence 344 489999999999999999999977 457999999999999999999999999999999843
No 42
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.83 E-value=7.8e-09 Score=101.82 Aligned_cols=62 Identities=39% Similarity=0.513 Sum_probs=56.1
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEEC-CeeEEEEECCCCCcCC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG-GYPVILLDTAGLRTTT 427 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~-g~~v~l~DTpG~~~~~ 427 (445)
..|+++|.||||||||+|+|++.++..++..++||++........+ +.++.+|||||+.+..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~ 73 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPK 73 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccc
Confidence 4689999999999999999999998888899999999998888888 8999999999998543
No 43
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.80 E-value=8.8e-09 Score=97.11 Aligned_cols=63 Identities=21% Similarity=0.318 Sum_probs=49.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCC--CccceEEEEEEEECCeeEEEEECCCCCcCC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP--GTTRDVIEKHLDIGGYPVILLDTAGLRTTT 427 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~--~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~ 427 (445)
..++|+++|++|||||||+|+|++..... +..+ ++|.++....+.+++..+.||||||+.+..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~ 92 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFH-SGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTE 92 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSC-C-------CCSCEEEEEEETTEEEEEEECCSCC---
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCc-cCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCC
Confidence 45799999999999999999999987743 4444 688888888899999999999999998543
No 44
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.79 E-value=5.3e-09 Score=100.78 Aligned_cols=63 Identities=19% Similarity=0.354 Sum_probs=55.4
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
..++++++|.+|+|||||+|+|++..+..++..+++|.+.....+..++..+.+|||||+.+.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~ 100 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG 100 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCC
Confidence 347999999999999999999999887666778888888888888888999999999999854
No 45
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.79 E-value=4.2e-09 Score=91.70 Aligned_cols=61 Identities=46% Similarity=0.666 Sum_probs=45.3
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
.+++++|++|+|||||+|+|++.....++..+++|.+.....+..++..+.+|||||+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 62 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG 62 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCc
Confidence 4799999999999999999998876555677888888888888889999999999999854
No 46
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.75 E-value=9.7e-09 Score=97.99 Aligned_cols=64 Identities=20% Similarity=0.247 Sum_probs=53.8
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCC-ccceEEEEEEEECCeeEEEEECCCCCcCC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG-TTRDVIEKHLDIGGYPVILLDTAGLRTTT 427 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~-tt~~~~~~~~~~~g~~v~l~DTpG~~~~~ 427 (445)
..++|+++|++|||||||+|+|++......+..+. +|++.....+.+++..+.||||||+.++.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~ 85 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWK 85 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCC
Confidence 45799999999999999999999987555444455 78888888888999999999999998554
No 47
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.75 E-value=5e-09 Score=92.92 Aligned_cols=62 Identities=18% Similarity=0.307 Sum_probs=52.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
+.++|+++|++|||||||+|+|++..+.. ...+++|.+.....+.+++..+.+|||||+.++
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 68 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTE-QEAGGITQHIGAYQVTVNDKKITFLDTPGHEAF 68 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSC-SSCCSSSTTCCCCEEEETTEEEEESCCCSSSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcccc-CCCCceeEeeeEEEEEeCCceEEEEECCCCHHH
Confidence 56899999999999999999999887643 556667777777778889999999999998754
No 48
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.75 E-value=7.9e-09 Score=95.56 Aligned_cols=64 Identities=22% Similarity=0.372 Sum_probs=52.4
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcccc-ceeeecCCCccceEEEEEEE-ECCeeEEEEECCCCCcCC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQ-ISIVTSIPGTTRDVIEKHLD-IGGYPVILLDTAGLRTTT 427 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~-~~~vs~~~~tt~~~~~~~~~-~~g~~v~l~DTpG~~~~~ 427 (445)
..++|+++|.+|+|||||+|+|++.. ...++..+++|.+.....+. .++..+.+|||||+.+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 93 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAE 93 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCccc
Confidence 45799999999999999999999987 45567788889887766655 456788899999987543
No 49
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.74 E-value=7.7e-09 Score=100.20 Aligned_cols=63 Identities=22% Similarity=0.338 Sum_probs=52.1
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCCCC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~~ 429 (445)
.++|+++|+||||||||+|+|++... .+++.+|+|.+.....+.. +..+.+|||||+.++...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~-~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~ 65 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPY 65 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC-CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCC
Confidence 46899999999999999999998764 3578899998887766654 678889999999876543
No 50
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.74 E-value=1.6e-08 Score=94.51 Aligned_cols=62 Identities=32% Similarity=0.448 Sum_probs=49.8
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
+.++|+++|++|||||||+|+|++..+. ++..+++|.+.....+..++..+.+|||||+.+.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 89 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDR 89 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCc
Confidence 4589999999999999999999998875 5777888998888888888889999999999643
No 51
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.74 E-value=3.4e-09 Score=109.41 Aligned_cols=60 Identities=42% Similarity=0.608 Sum_probs=40.0
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
.+|+++|.||||||||+|+|++...+.+++.+++|++.....+.+++..+.+|||||+..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~ 63 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDI 63 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCC
Confidence 589999999999999999999998887889999999999888888898999999999983
No 52
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.73 E-value=9.9e-09 Score=100.78 Aligned_cols=59 Identities=44% Similarity=0.539 Sum_probs=53.1
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~ 424 (445)
.+++++|+||||||||+|+|++..+..++..++||++.....+..++.++.+|||||+.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~ 67 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 67 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence 47999999999999999999999887778888899988777788888899999999987
No 53
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.69 E-value=2.6e-08 Score=88.24 Aligned_cols=62 Identities=29% Similarity=0.363 Sum_probs=49.4
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC--eeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG--YPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g--~~v~l~DTpG~~~~ 426 (445)
..++|+++|++|||||||+|+|++..+.. ...++++.+.....+.+++ ..+.+|||||....
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 71 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSG-SYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERF 71 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC-ccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhh
Confidence 34799999999999999999999987753 5566777788888888888 45669999997644
No 54
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.67 E-value=2.3e-08 Score=91.52 Aligned_cols=66 Identities=29% Similarity=0.357 Sum_probs=50.2
Q ss_pred cccccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC--eeEEEEECCCCCcC
Q psy1007 360 VRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG--YPVILLDTAGLRTT 426 (445)
Q Consensus 360 ~~~~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g--~~v~l~DTpG~~~~ 426 (445)
......++|+++|++|||||||+|+|++..+.. ...++++.++....+.+++ ..+.+|||||+.++
T Consensus 15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 82 (213)
T 3cph_A 15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERF 82 (213)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHCCCCC-SSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGG
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH
Confidence 344567899999999999999999999877642 4556677788777888888 46679999998754
No 55
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.67 E-value=3.1e-08 Score=87.87 Aligned_cols=63 Identities=29% Similarity=0.350 Sum_probs=48.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
..++++++|++|||||||+|+|++..+......++++.+.....+.+++. .+.+|||||+.++
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~ 73 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERF 73 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHH
Confidence 45899999999999999999999887743344566677777777777876 5669999998753
No 56
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.66 E-value=3.8e-08 Score=85.69 Aligned_cols=59 Identities=29% Similarity=0.415 Sum_probs=46.3
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRT 425 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~ 425 (445)
.++++++|++|+|||||+|+|+++.+. ....+++.+.....+.+++.. +.+|||||+.+
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 63 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCc--ccCCCCcceeEEEEEEECCEEEEEEEEECCCchh
Confidence 478999999999999999999987764 344455556666677777765 66999999874
No 57
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.66 E-value=1.7e-08 Score=94.39 Aligned_cols=62 Identities=29% Similarity=0.348 Sum_probs=43.7
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEE--EEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~~ 426 (445)
+.++|+++|++|||||||+++|+.+.+.. ...+....++....+.+++..+. ||||||++++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~-~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~ 75 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERF 75 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC-----------CEEEEEECSSCEEEEEEECCSCTTTC
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCC-CcCCccceEEEEEEEEecceEEEEEEEECCCchhh
Confidence 34899999999999999999999888743 33444556777777877776554 9999999854
No 58
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.65 E-value=2.3e-08 Score=109.04 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=31.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGT 399 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~t 399 (445)
++++|+++|.+|+|||||+|+|++..+..++..|+|
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T 103 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT 103 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc
Confidence 568999999999999999999999887666666665
No 59
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.63 E-value=1.2e-08 Score=105.85 Aligned_cols=60 Identities=42% Similarity=0.605 Sum_probs=43.5
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~ 424 (445)
..+|+++|.||||||||+|+|++...+.++..+++|++.....+.+++..+.+|||||+.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~ 82 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGID 82 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC--
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCC
Confidence 368999999999999999999999888788999999999988888888899999999987
No 60
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.62 E-value=5.3e-08 Score=93.98 Aligned_cols=61 Identities=23% Similarity=0.340 Sum_probs=41.5
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeec-------CCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTS-------IPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~-------~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
++|+++|.+|+|||||+|+|++.+...... .++++.+.....+..+|. .+.+|||||+.+.
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~ 78 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 78 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc
Confidence 689999999999999999998877654332 334455666666655664 7779999999743
No 61
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.62 E-value=6.2e-08 Score=86.47 Aligned_cols=60 Identities=35% Similarity=0.380 Sum_probs=47.3
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeE--EEEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPV--ILLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v--~l~DTpG~~~~ 426 (445)
.++|+++|++|||||||+|+|++..+. ...++|+.+.....+.+++..+ .+|||||+.++
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 65 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCC--CCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCchheEEEEEEECCcEEEEEEEECCCcHHH
Confidence 479999999999999999999987753 4566777777777788888764 48999998754
No 62
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.61 E-value=5.7e-08 Score=85.28 Aligned_cols=60 Identities=18% Similarity=0.315 Sum_probs=47.0
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
..+.++++++|++|+|||||+|+|++..+.. ..+ |.......+.+++..+.+|||||+..
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~ 63 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVVT--TIP--TIGFNVETVTYKNLKFQVWDLGGLTS 63 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCCC--CCC--CSSEEEEEEEETTEEEEEEEECCCGG
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCC--cCC--cCccceEEEEECCEEEEEEECCCChh
Confidence 3456899999999999999999999877632 222 33455566778888999999999864
No 63
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.61 E-value=3.4e-08 Score=87.45 Aligned_cols=61 Identities=20% Similarity=0.311 Sum_probs=48.2
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC---eeEEEEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG---YPVILLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g---~~v~l~DTpG~~~~ 426 (445)
.++++++|++|||||||+|+|++..+.. ...+.++.++....+.+++ ..+.+|||||+..+
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~ 69 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETFGK-QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIG 69 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGTTH-HHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcCCC-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccc
Confidence 4799999999999999999999877642 2334455677777888876 57779999998754
No 64
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.60 E-value=5.5e-08 Score=85.99 Aligned_cols=60 Identities=28% Similarity=0.437 Sum_probs=45.6
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRT 425 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~ 425 (445)
.++++++|++|+|||||+|+|++..+.. ...++++.+.....+.+++. .+.+|||||+.+
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 68 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKFDT-QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 68 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCC-----CCSEEEEEEEEEETTEEEEEEEEECCCCGG
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeEEEEEEEECCEEEEEEEEeCCCchh
Confidence 4799999999999999999999877642 34455566776777778875 666999999764
No 65
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.60 E-value=6.6e-08 Score=87.79 Aligned_cols=60 Identities=28% Similarity=0.338 Sum_probs=48.0
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~ 425 (445)
+.++|+++|++|||||||+|+|++..+. ..+.+|+.+.....+.+++. .+.+|||||+.+
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 74 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 74 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--TTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEcCCChhh
Confidence 4589999999999999999999988753 45566666666667777775 566999999874
No 66
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.60 E-value=5.4e-08 Score=85.98 Aligned_cols=61 Identities=28% Similarity=0.315 Sum_probs=48.9
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
.++++++|++|+|||||+|+|++..+.. ...++++.++....+.+++. .+.+|||||+.++
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~ 76 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 76 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHH
Confidence 4899999999999999999999877643 44556667787778888875 5669999998743
No 67
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.60 E-value=6.2e-08 Score=87.32 Aligned_cols=61 Identities=25% Similarity=0.359 Sum_probs=39.7
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcccc-ceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQ-ISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT 427 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~-~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~ 427 (445)
..++++++|++|+|||||+|+|++.. ...++..+++|.+.....+ ++ .+.+|||||+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--~~-~~~l~Dt~G~~~~~ 83 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII--ND-ELHFVDVPGYGFAK 83 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE--TT-TEEEEECCCBCCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE--CC-cEEEEECCCCCccc
Confidence 45899999999999999999999886 3445566677777665433 43 67899999987443
No 68
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.59 E-value=5.6e-08 Score=87.43 Aligned_cols=48 Identities=23% Similarity=0.307 Sum_probs=36.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG 412 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g 412 (445)
..++|+++|++|+|||||+|+|++..+.. ...+.++.++....+.+++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~ 53 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHE-NTNTTIGASFCTYVVNLND 53 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSCEEEEEEEETTC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCC-CcCccccceeEEEEEEecC
Confidence 45899999999999999999999987642 3334445666666666665
No 69
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.59 E-value=6e-08 Score=87.35 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=50.5
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
..++|+++|++|||||||+|+|++..+.. ...++++.+.....+.+++. .+.+|||||+.++
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 78 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 78 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS-CCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEECCCcHhh
Confidence 44799999999999999999999887643 45566777888888888884 5669999998754
No 70
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.59 E-value=8.3e-08 Score=85.40 Aligned_cols=60 Identities=32% Similarity=0.361 Sum_probs=47.6
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~~ 426 (445)
.++|+++|++|||||||+|+|+++.+. ....+|+.+.....+.+++.. +.+|||||+.++
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQFV--DSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 67 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCCccccEEEEEEECCEEEEEEEEeCCCchhh
Confidence 478999999999999999999977753 455566666667777788854 469999998754
No 71
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.59 E-value=2.3e-08 Score=100.58 Aligned_cols=61 Identities=33% Similarity=0.377 Sum_probs=47.0
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC-----------------eeEEEEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG-----------------YPVILLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g-----------------~~v~l~DTpG~~~~ 426 (445)
+++++++|.||||||||+|+|++.. ..++++|+||.+.....+.+++ ..+.+|||||+.+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 4789999999999999999999877 4568889999887776777665 46789999999843
No 72
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.58 E-value=5.9e-08 Score=86.65 Aligned_cols=61 Identities=25% Similarity=0.334 Sum_probs=48.0
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~ 425 (445)
..++|+++|++|||||||+|+|++..+.. ...++++.++....+.+++. .+.+|||||+.+
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 71 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKD-DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 34799999999999999999999887643 34455566777777778874 666999999864
No 73
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.58 E-value=8.7e-08 Score=87.00 Aligned_cols=63 Identities=33% Similarity=0.401 Sum_probs=44.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeE--EEEECCCCCcC
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPV--ILLDTAGLRTT 426 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v--~l~DTpG~~~~ 426 (445)
....++|+++|++|||||||+|+|++..+. +.+.+|+.+.....+.+++..+ .+|||||+.++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 81 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYP--TEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEF 81 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCCHHH
Confidence 346789999999999999999999988753 4566777777777778888644 49999999754
No 74
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.58 E-value=8.5e-08 Score=86.04 Aligned_cols=61 Identities=31% Similarity=0.421 Sum_probs=47.6
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT 427 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~ 427 (445)
..++++++|++|+|||||+|+|++.....++..+++|.+...... +..+.+|||||+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~i~Dt~G~~~~~ 82 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV---NSKYYFVDLPGYGYAK 82 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE---TTTEEEEECCCBSSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE---CCcEEEEECCCCcccc
Confidence 457999999999999999999999886666677777777654332 3467899999987443
No 75
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.58 E-value=6.2e-08 Score=84.96 Aligned_cols=60 Identities=33% Similarity=0.521 Sum_probs=45.4
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRT 425 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~ 425 (445)
.++++++|++|+|||||+|+|++..+.. ...+.++.++....+.+++. .+.+|||||+.+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 67 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFND-KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCS-SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCc-CCCCccceEEEEEEEEECCEEEEEEEEECCCcHh
Confidence 4799999999999999999999877642 34455666666667777765 455999999864
No 76
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.57 E-value=7e-08 Score=84.33 Aligned_cols=61 Identities=30% Similarity=0.451 Sum_probs=47.6
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
.++++++|++|+|||||+|+|++..+.. ...+.++.+.....+.+++. .+.+|||||+.++
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTK-DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF 67 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCC-CSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGT
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhH
Confidence 4789999999999999999999877642 33445556777777777765 5669999998754
No 77
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.57 E-value=8e-08 Score=86.56 Aligned_cols=63 Identities=14% Similarity=0.148 Sum_probs=47.8
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
..+.++|+++|++|||||||+|+|++..... .. ...|.+.....+.+++..+.+|||||+.++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~-~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQS-QN-ILPTIGFSIEKFKSSSLSFTVFDMSGQGRY 80 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCC-SS-CCCCSSEEEEEEECSSCEEEEEEECCSTTT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCC-CC-cCCccceeEEEEEECCEEEEEEECCCCHHH
Confidence 3466899999999999999999999887322 22 234555667778888889999999998754
No 78
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.57 E-value=6.9e-08 Score=84.71 Aligned_cols=60 Identities=23% Similarity=0.255 Sum_probs=39.3
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~~ 426 (445)
++++++|++|||||||+|+|++..... ...+.++.+.....+.+++.. +.+|||||+.+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 64 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDH-AHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDA 64 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC---
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcc-cccCCCcCCeeeEEEEECCeEEEEEEEECCCcccc
Confidence 689999999999999999999776543 333455677777778888754 449999999754
No 79
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.57 E-value=4.9e-08 Score=96.02 Aligned_cols=62 Identities=29% Similarity=0.392 Sum_probs=51.2
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEE-CCeeEEEEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDI-GGYPVILLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~-~g~~v~l~DTpG~~~~ 426 (445)
+++++++|++|||||||+|+|+++....++..+++|.+.....+.+ ++..+.+|||||+..+
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~ 65 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF 65 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH
Confidence 4799999999999999999999875444466788888888877776 5677889999998754
No 80
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.57 E-value=4.7e-08 Score=85.57 Aligned_cols=61 Identities=28% Similarity=0.378 Sum_probs=44.2
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
.++++++|++|+|||||+|+|++..+.. ...++++.+.....+.+++. .+.+|||||+.+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 65 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF 65 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC--------CCEEEEEEESSSCEEEEEEECCTTGGGT
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCCChhh
Confidence 3789999999999999999999887642 44556677777777777764 5669999998754
No 81
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.57 E-value=7.3e-08 Score=87.85 Aligned_cols=61 Identities=25% Similarity=0.278 Sum_probs=48.6
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeE--EEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPV--ILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v--~l~DTpG~~~ 425 (445)
..++|+++|++|||||||+|+|++..... ...++++.+.....+.+++..+ .+|||||+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 84 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDS-AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCG-GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCc-cCCCCcccceEEEEEEECCEEEEEEEEecCCCcc
Confidence 44799999999999999999998755422 4556777888888888888654 4899999974
No 82
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.56 E-value=9.9e-08 Score=84.39 Aligned_cols=61 Identities=31% Similarity=0.323 Sum_probs=48.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
+.++++++|++|||||||+|+|++..+. +...+|+.+.....+.+++. .+.+|||||+.++
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~ 70 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFV--SDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEF 70 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCC--SSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCc--cccCCCcCceEEEEEEECCEEEEEEEEECCCchhh
Confidence 3479999999999999999999988653 45566766666667777875 5559999998754
No 83
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.56 E-value=2.9e-08 Score=88.53 Aligned_cols=62 Identities=21% Similarity=0.327 Sum_probs=30.6
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC--eeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG--YPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g--~~v~l~DTpG~~~~ 426 (445)
..++|+++|++|||||||+|+|++..+.. ...++++.++....+.+++ ..+.+|||||+.++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 70 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNS-TFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 70 (183)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEcCCCChhh
Confidence 34799999999999999999999876532 3445566677777777887 46669999998643
No 84
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.56 E-value=1e-07 Score=82.94 Aligned_cols=59 Identities=29% Similarity=0.338 Sum_probs=44.2
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRT 425 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~ 425 (445)
.++++++|++|+|||||+|+|++..+. ....+|+.+.....+.+++. .+.+|||||+.+
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 64 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 64 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccC--CCCCCCcceEEEEEEEECCEEEEEEEEECCCcch
Confidence 378999999999999999999988753 34555666666666677775 566999999874
No 85
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.55 E-value=3.8e-08 Score=86.73 Aligned_cols=59 Identities=31% Similarity=0.483 Sum_probs=38.9
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRT 425 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~ 425 (445)
.++|+++|++|||||||+|+|++..+......++ .+.....+.+++. .+.+|||||+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~D~~g~~~ 64 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLG--EDVYERTLTVDGEDTTLVVVDTWEAEK 64 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSS--SSEEEEEEEETTEEEEEEEECCC----
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccc--cceeEEEEEECCEEEEEEEEecCCCCc
Confidence 3789999999999999999999988755433333 3445556677775 456999999874
No 86
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.55 E-value=9.8e-08 Score=86.44 Aligned_cols=61 Identities=25% Similarity=0.354 Sum_probs=44.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~ 425 (445)
..++|+++|++|||||||+|+|++..+.. ...+..+.+.....+.+++. .+.+|||||+.+
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 87 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCE-ACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 87 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCc-CCCCccceeEEEEEEEECCeEEEEEEEeCCCcHH
Confidence 45799999999999999999999887643 34455566777777778774 566999999874
No 87
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.54 E-value=9.4e-08 Score=87.22 Aligned_cols=61 Identities=25% Similarity=0.317 Sum_probs=48.8
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
.++|+++|++|||||||+|+|++..+.. ...++++.++....+.+++. .+.+|||||+.++
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 70 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTN-DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF 70 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCT-TCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEeCCChHHH
Confidence 4799999999999999999999887643 34456667777777778875 5669999998754
No 88
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.54 E-value=9e-08 Score=83.50 Aligned_cols=60 Identities=28% Similarity=0.324 Sum_probs=44.6
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
.++++++|++|||||||+|+|++..+. ....+|+.+.....+.+++. .+.+|||||+.++
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 64 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC--CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCCccceEEEEEEECCEEEEEEEEECCChHHH
Confidence 378999999999999999999987653 33445555555555666644 5669999998754
No 89
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.54 E-value=8.2e-08 Score=85.19 Aligned_cols=59 Identities=20% Similarity=0.376 Sum_probs=45.8
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~ 425 (445)
+.++++++|++|||||||+|+|++..+.. ..+|+.+.....+.+++.. +.+|||||+..
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 66 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV---LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD 66 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC---CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC---cCCCcceeEEEEEEECCEEEEEEEEECCCCch
Confidence 34799999999999999999999987743 3345555556677778754 45999999874
No 90
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.54 E-value=9.2e-08 Score=83.61 Aligned_cols=59 Identities=22% Similarity=0.307 Sum_probs=35.0
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~~ 426 (445)
.++++++|++|||||||+|+|++.....++..++++.+ ..+.+++.. +.+|||||+..+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~ 62 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGG 62 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEEEEEEEEECC-----
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEEEEEEEEECCCCccc
Confidence 37899999999999999999998776554444555543 345566654 459999998753
No 91
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.54 E-value=9.6e-08 Score=83.44 Aligned_cols=61 Identities=26% Similarity=0.352 Sum_probs=45.6
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
.++++++|++|+|||||+|+|++..+.. ...+..+.+.....+.+++. .+.+|||||+.++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 65 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAE-NKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF 65 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCChhh
Confidence 3789999999999999999999877542 23344455555566667765 5669999998743
No 92
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.54 E-value=2.5e-07 Score=92.84 Aligned_cols=64 Identities=33% Similarity=0.417 Sum_probs=54.8
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCCC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~~ 428 (445)
..++++++|++|||||||+|+|++... .+...+++|.+.....+..++..+.+|||||+.+...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 229 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPI 229 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEEEEecCceEEEEeCCCccccch
Confidence 567999999999999999999999874 4577888999888888877888899999999975543
No 93
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C*
Probab=98.54 E-value=6.8e-08 Score=90.02 Aligned_cols=129 Identities=14% Similarity=0.046 Sum_probs=77.5
Q ss_pred CceEEEEEEecccH---HHHHHHhcCCCCCCCCCCceeEEeeeecCCCCce---ecceEEEeecc---------------
Q psy1007 39 KCGVSVIRVSGPDT---LNALKSMACYPDQKVPKPRYASLRNIVDPVSKVV---LDEGLCLWFPR--------------- 97 (445)
Q Consensus 39 ~~ai~viRiSG~~a---~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~---iD~~i~~~~~~--------------- 97 (445)
.|-.+.++|+||++ ...++++++. .. .++ +|.+ +||.+++++.+
T Consensus 37 vShmg~~~v~G~~a~~~l~~l~~~~g~---~l-----------~~~-~g~v~~~~dDl~v~rl~~d~~llv~na~~~d~~ 101 (210)
T 2gag_C 37 IAFTTQISLRCAPGTQAHAALAAATGA---GL-----------PAK-VGEVAGEAQGTAVLWLAPDEFLATSAENTELGG 101 (210)
T ss_dssp CCSCEEEEEECCTTSHHHHHHHHHHSS---CC-----------CCS-TTBCEECTTSCEEEEEETTEEEEEESSCTTHHH
T ss_pred CCCCcEEEEEeCChhHHHHHHHHHhCc---CC-----------CCC-CCEEEEccCCEEEEEEcCCEEEEEeCcHHHHHH
Confidence 56778999999995 4555555542 11 122 2344 68888888765
Q ss_pred --------------cccCcceEeeccCCChHHHhhhhccCCCCCCCCCeEEEeeeeecCCCCeeecCceeeecCCCCCcC
Q psy1007 98 --------------HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFT 163 (445)
Q Consensus 98 --------------~~~~giavIrisGp~a~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~~f~~p~syT 163 (445)
+...+.++++||||.+..++++++..+..+..++...+....++ + +- .+.++ |
T Consensus 102 ~l~~~l~~~~v~v~d~s~~~a~lalqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~v~---g-----~~--v~v~R---t 168 (210)
T 2gag_C 102 VLSAALGDAPGQVVDLSANRSVLELTGPDAPLVLRKSCPADLHPRAFAVNQAIVTSVA---N-----IP--VLLWR---T 168 (210)
T ss_dssp HHHHHHTTSSSEEEECTTTBCCEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEET---T-----EE--EEEEE---E
T ss_pred HHHHhcCcCCEEEEECCCCEEEEEEECHhHHHHHHhhCcccCCcccCCCCcEEEEEEC---C-----EE--EEEEE---e
Confidence 11235789999999999999999754442211231111112221 1 11 22233 9
Q ss_pred CCceeEEEecCcHHHHHHHHHHHhcC---CCcccccC
Q psy1007 164 GEDCCEFQVHGSIAVINAILGALTKL---PGLRPAEP 197 (445)
Q Consensus 164 GEd~~Ei~~hg~~~v~~~i~~~l~~~---~g~r~a~~ 197 (445)
|||++||+|+.+.+ ..+|+.|... -|++++.+
T Consensus 169 GEdGfEI~v~~~~A--~~lw~~Ll~a~~~~G~~~~~~ 203 (210)
T 2gag_C 169 GEQAWRIMPRASFT--EHTVHWLVDAMSEFASEAVIL 203 (210)
T ss_dssp ETTEEEEEEBGGGH--HHHHHHHHHHHHGGGC-----
T ss_pred CCCEEEEEEEHHHH--HHHHHHHHHHHHHcCCeEEEe
Confidence 99999999999998 6689988743 04555543
No 94
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.54 E-value=6.9e-08 Score=87.80 Aligned_cols=61 Identities=30% Similarity=0.354 Sum_probs=44.9
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeE--EEEECCCCCc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPV--ILLDTAGLRT 425 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v--~l~DTpG~~~ 425 (445)
.++|+++|++|||||||+|+|++.....++..++++.++....+.+++..+ .+|||+|+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~ 68 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKG 68 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC--
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcc
Confidence 378999999999999999999975443334556677777777788888755 4899999864
No 95
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.53 E-value=1.5e-07 Score=84.52 Aligned_cols=58 Identities=26% Similarity=0.463 Sum_probs=45.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
..++++++|++|||||||+|+|++..+..+.+..+ .....+.+++..+.+|||||+..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g----~~~~~~~~~~~~l~i~Dt~G~~~ 72 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQG----FNIKSVQSQGFKLNVWDIGGQRK 72 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT----EEEEEEEETTEEEEEEECSSCGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC----eEEEEEEECCEEEEEEECCCCHH
Confidence 45899999999999999999999887654333222 33455677888899999999874
No 96
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.53 E-value=1.5e-07 Score=83.63 Aligned_cols=60 Identities=28% Similarity=0.338 Sum_probs=47.5
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~ 425 (445)
+.++|+++|++|+|||||+|+|++..+. ....+|+.+.....+.+++. .+.+|||||+.+
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 78 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 78 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--CSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCC--CcCCCccceEEEEEEEECCEEEEEEEEECCCCcc
Confidence 4489999999999999999999988753 45556666666666777775 566999999874
No 97
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.53 E-value=9.9e-08 Score=84.91 Aligned_cols=61 Identities=31% Similarity=0.385 Sum_probs=47.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEE--EEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~~ 426 (445)
+.++++++|++|||||||+|+|++..+. ....+|+.+.....+.+++..+. +|||||+.++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 66 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 66 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC--SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC--CCcCCcccceeEEEEEECCEEEEEEEEECCCCHhH
Confidence 3479999999999999999999987653 34455666666666777776555 9999999754
No 98
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.52 E-value=1.4e-07 Score=85.14 Aligned_cols=61 Identities=21% Similarity=0.253 Sum_probs=44.9
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
..++|+++|++|||||||+|+|++..+. ..+.+|+.+.....+.+++. .+.+|||||+..+
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 82 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI--SEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTP 82 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceeeEEEEECCEEEEEEEEECCCCCcc
Confidence 4589999999999999999999988753 45556666655556667765 4459999999754
No 99
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.52 E-value=1.8e-07 Score=81.11 Aligned_cols=60 Identities=35% Similarity=0.383 Sum_probs=45.6
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~~ 426 (445)
.++++++|++|+|||||+|+|++..+. ....+++.+.....+..++.. +.+|||||..++
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 64 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFV--DECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCc--cccCCccceEEEEEEEECCEEEEEEEEECCCchhh
Confidence 368999999999999999999987653 344455555556666777654 459999998743
No 100
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.51 E-value=1.7e-07 Score=83.86 Aligned_cols=59 Identities=19% Similarity=0.388 Sum_probs=45.1
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
++.++++++|++|||||||+|+|++... ....+ |.......+.+++..+.+|||||+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~---~~~~~-t~~~~~~~~~~~~~~~~~~Dt~G~~~ 74 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDV---DTISP-TLGFNIKTLEHRGFKLNIWDVGGQKS 74 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCC---SSCCC-CSSEEEEEEEETTEEEEEEEECCSHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCC---Ccccc-cCccceEEEEECCEEEEEEECCCCHh
Confidence 3568999999999999999999998772 22222 33355566777889999999999853
No 101
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.51 E-value=1.5e-07 Score=84.76 Aligned_cols=62 Identities=29% Similarity=0.423 Sum_probs=48.4
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
+.++|+++|++|||||||+|+|++..+.. ...+..+.++....+.+++. .+.+|||||+.++
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 82 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPD-RTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF 82 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCS-SCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCchhh
Confidence 45899999999999999999999877643 33445566677777777774 6679999998643
No 102
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.51 E-value=1.1e-07 Score=86.49 Aligned_cols=62 Identities=29% Similarity=0.375 Sum_probs=48.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
..++|+++|++|+|||||+|+|++..+.. ...++++.+.....+.+++. .+.+|||||+..+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 70 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF 70 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH
Confidence 34799999999999999999999887643 34445567777777777763 5679999998654
No 103
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.51 E-value=1.3e-07 Score=85.36 Aligned_cols=62 Identities=26% Similarity=0.333 Sum_probs=48.3
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeE--EEEECCCCCcC
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPV--ILLDTAGLRTT 426 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v--~l~DTpG~~~~ 426 (445)
.+.++|+++|++|||||||+|+|++..+. ..+.+|+.+.....+.+++..+ .+|||||+.++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 84 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIP--TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY 84 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCC--CccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHH
Confidence 35689999999999999999999988763 3445566555566677777655 69999998754
No 104
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.51 E-value=1.1e-07 Score=87.10 Aligned_cols=61 Identities=33% Similarity=0.415 Sum_probs=47.8
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEE--EEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~~ 426 (445)
+.++|+++|++|||||||+|+|++..+. ....+|+.+.....+.+++..+. +|||||+.++
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 91 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 91 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCC--C-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCC--CCcCCeecceeEEEEEECCEEEEEEEEECCCchhh
Confidence 5689999999999999999999987763 45566777777777777776666 9999999754
No 105
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.50 E-value=5.7e-08 Score=88.44 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=49.7
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
..++|+++|++|||||||+|+|++..+.. ...++++.+.....+.+++. .+.+|||||+.++
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 95 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 95 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCC-HHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCcccceEEEEEEEECCEEEEEEEEECCCcHhH
Confidence 34799999999999999999999877643 44456677787788888874 5669999998754
No 106
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.50 E-value=1.2e-07 Score=85.66 Aligned_cols=63 Identities=24% Similarity=0.293 Sum_probs=46.8
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
...++++++|++|||||||+|+|++..+.. ...+.++.+.....+.+++. .+.+|||||+.++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 83 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF 83 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGGT
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEECCCchhh
Confidence 345899999999999999999999887643 33344566666667777775 5669999998754
No 107
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.50 E-value=2.3e-07 Score=84.12 Aligned_cols=60 Identities=18% Similarity=0.285 Sum_probs=44.0
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
++.++|+++|++|||||||+|+|++..+.. ..| |.+.....+..++..+.+|||||+.++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~ 86 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNICFTVWDVGGQDKI 86 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE--EEE--ETTEEEEEEEETTEEEEEEECC-----
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc--cCC--cCceeEEEEEECCEEEEEEECCCCHhH
Confidence 356899999999999999999999887643 222 444556667778889999999998754
No 108
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.50 E-value=1.5e-07 Score=84.16 Aligned_cols=61 Identities=18% Similarity=0.298 Sum_probs=45.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
..+.++|+++|++|||||||+|+|++..+..+....+.+ ...+.+++..+.+|||||+.++
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~Dt~G~~~~ 78 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN----VEEIVINNTRFLMWDIGGQESL 78 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSS----CEEEEETTEEEEEEEESSSGGG
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCcee----eEEEEECCEEEEEEECCCCHhH
Confidence 346689999999999999999999998875444333332 2345668889999999998754
No 109
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.50 E-value=1.5e-07 Score=84.47 Aligned_cols=59 Identities=22% Similarity=0.313 Sum_probs=45.7
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
+.++++++|++|||||||+|+|+++.+.. ..+ |.......+.+++..+.+|||||+.+.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~ 79 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT--TVP--TVGVNLETLQYKNISFEVWDLGGQTGV 79 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE--ECS--STTCCEEEEEETTEEEEEEEECCSSSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC--cCC--CCceEEEEEEECCEEEEEEECCCCHhH
Confidence 56899999999999999999999887643 233 223444556778889999999998754
No 110
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.50 E-value=1.1e-07 Score=88.36 Aligned_cols=61 Identities=30% Similarity=0.369 Sum_probs=46.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeE--EEEECCCCC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPV--ILLDTAGLR 424 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v--~l~DTpG~~ 424 (445)
..++|+++|++|||||||+|+|++.....++.+++++.++....+.+++..+ .+|||+|+.
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~ 98 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCc
Confidence 4489999999999999999999975443334556677787777888888754 489999976
No 111
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.50 E-value=1.5e-07 Score=84.46 Aligned_cols=60 Identities=35% Similarity=0.404 Sum_probs=45.0
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCee--EEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP--VILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~--v~l~DTpG~~~ 425 (445)
+.++|+++|.+|||||||+|+|++..+. ....+|+.+.....+.+++.. +.+|||||+.+
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 81 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEEECCEEEEEEEEECCChHH
Confidence 3479999999999999999999987653 344556666666677777754 66999999864
No 112
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.50 E-value=4.9e-08 Score=99.21 Aligned_cols=65 Identities=34% Similarity=0.412 Sum_probs=41.4
Q ss_pred ccccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe-----------------eEEEEECCCC
Q psy1007 361 RIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY-----------------PVILLDTAGL 423 (445)
Q Consensus 361 ~~~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~-----------------~v~l~DTpG~ 423 (445)
++..+++++++|.||||||||+|+|++... .++++|+||.+.....+.+.+. .+.+|||||+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl 96 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGL 96 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCc
Confidence 445788999999999999999999999876 6688999999888888777652 3789999999
Q ss_pred CcC
Q psy1007 424 RTT 426 (445)
Q Consensus 424 ~~~ 426 (445)
.+.
T Consensus 97 ~~~ 99 (396)
T 2ohf_A 97 VKG 99 (396)
T ss_dssp ---
T ss_pred ccc
Confidence 853
No 113
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.50 E-value=1.3e-07 Score=86.82 Aligned_cols=61 Identities=26% Similarity=0.314 Sum_probs=48.2
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~ 425 (445)
..++|+++|++|||||||+|+|++..+.. ...++.+.++....+.+++. .+.+|||||+..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 87 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcHH
Confidence 45799999999999999999999877642 34445566777777888875 566999999864
No 114
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.50 E-value=8.1e-08 Score=83.82 Aligned_cols=56 Identities=20% Similarity=0.319 Sum_probs=43.5
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
++++++|++|||||||+|+|++..+.. ..| |.......+..++..+.+|||||+.+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~ 56 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQDK 56 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC--CCC--CSSCCEEEEECSSCEEEEEECCCCGG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc--ccC--cCceeEEEEEECCEEEEEEEcCCChh
Confidence 479999999999999999999877642 233 33344556667788889999999864
No 115
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.49 E-value=1.3e-07 Score=87.83 Aligned_cols=62 Identities=26% Similarity=0.394 Sum_probs=45.9
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
..++|+++|++|||||||+|+|++..+.. ...++.+.++....+.+++. .+.+|||||+.++
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 75 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNM-DSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERY 75 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTTTTT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEECCCccch
Confidence 34799999999999999999999887653 33455566677777778874 6679999998754
No 116
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.49 E-value=2.5e-07 Score=80.96 Aligned_cols=59 Identities=22% Similarity=0.256 Sum_probs=41.7
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRT 425 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~ 425 (445)
.++|+++|++|+|||||+|+|++..+.. ...++........+..++. .+.+|||||+.+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 63 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRE--SYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ 63 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCS--SCCCCSCEEEEEEEEETTEEEEEEEEECCSCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCCccccEEEEEEECCEEEEEEEEECCCchh
Confidence 4789999999999999999999876532 2223333333344455554 466999999874
No 117
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.49 E-value=1.3e-07 Score=86.41 Aligned_cols=59 Identities=24% Similarity=0.324 Sum_probs=39.5
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
+.++++++|++|||||||+|+|++..+....+ |.......+.+++..+.+|||||+.++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~----t~~~~~~~~~~~~~~l~i~Dt~G~~~~ 82 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVP----TLHPTSEELTIAGMTFTTFDLGGHIQA 82 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------C----CCCCSCEEEEETTEEEEEEEECC----
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccCC----CCCceeEEEEECCEEEEEEECCCcHhh
Confidence 45789999999999999999999887643222 222223566778888899999998754
No 118
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.49 E-value=6.4e-08 Score=98.70 Aligned_cols=59 Identities=31% Similarity=0.389 Sum_probs=33.1
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEE---------------------ECC---eeEEEEECC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLD---------------------IGG---YPVILLDTA 421 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~---------------------~~g---~~v~l~DTp 421 (445)
++++++|.||||||||+|+|++.. ..++++|+||++....... +++ .++.+||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 478999999999999999999987 5678899999877665432 132 467799999
Q ss_pred CCCc
Q psy1007 422 GLRT 425 (445)
Q Consensus 422 G~~~ 425 (445)
|+.+
T Consensus 80 G~~~ 83 (397)
T 1wxq_A 80 GLVP 83 (397)
T ss_dssp ----
T ss_pred Cccc
Confidence 9863
No 119
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.49 E-value=1.6e-07 Score=83.49 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=41.9
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
+.++|+++|++|||||||+|+++++.+.... +... .....+.+++..+.+|||||+.++
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~t~~--~~~~~~~~~~~~~~i~Dt~G~~~~ 75 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTK--PTIG--FNVETLSYKNLKLNVWDLGGQTSI 75 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEEC--SSTT--CCEEEEEETTEEEEEEEEC----C
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccC--CcCc--cceEEEEECCEEEEEEECCCCHhH
Confidence 5689999999999999999999987764322 2222 334456678888899999998753
No 120
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.48 E-value=1.6e-07 Score=85.00 Aligned_cols=59 Identities=22% Similarity=0.332 Sum_probs=45.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
+.++++++|++|||||||+|+|++..+..+ ..|.......+.+++..+.+|||||+.+.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~ 80 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATL----QPTWHPTSEELAIGNIKFTTFDLGGHIQA 80 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCC----CCCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcc----ccCCCCCeEEEEECCEEEEEEECCCCHHH
Confidence 457999999999999999999998876432 22333345677788989999999999754
No 121
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.48 E-value=1.8e-07 Score=84.28 Aligned_cols=63 Identities=25% Similarity=0.350 Sum_probs=45.6
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
...++|+++|++|||||||+|+|++..+.. ...+..+.++....+.+++. .+.+|||||+.++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSH-DSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERY 87 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCS-SCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTT
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCCchhh
Confidence 345899999999999999999999887643 22233344555555656544 5569999999754
No 122
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.48 E-value=1.9e-07 Score=84.27 Aligned_cols=61 Identities=21% Similarity=0.297 Sum_probs=44.6
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
...+|+++|++|||||||+|+|++..+..+. +.+ |.......+...+..+.+|||||+.++
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~-~~~-t~~~~~~~~~~~~~~~~i~Dt~G~~~~ 76 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKH-ITA-TVGYNVETFEKGRVAFTVFDMGGAKKF 76 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----C-CCC-CSSEEEEEEEETTEEEEEEEECCSGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccc-ccc-ccceeEEEEEeCCEEEEEEECCCCHhH
Confidence 4579999999999999999999998875422 222 233445556778888999999999753
No 123
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.48 E-value=1.7e-07 Score=84.49 Aligned_cols=62 Identities=21% Similarity=0.334 Sum_probs=45.5
Q ss_pred ccccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 361 RIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 361 ~~~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
..++.++|+++|++|||||||+|+|++..+.. ...+ |.......+..++..+.+|||||+.+
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNE-DMIP--TVGFNMRKITKGNVTIKLWDIGGQPR 79 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCC--CCSEEEEEEEETTEEEEEEEECCSHH
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCC-ccCC--CCceeEEEEEeCCEEEEEEECCCCHh
Confidence 34567899999999999999999999877642 2222 22233344667888899999999864
No 124
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.48 E-value=2.3e-07 Score=82.67 Aligned_cols=61 Identities=36% Similarity=0.375 Sum_probs=47.2
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEE--EEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~~ 426 (445)
+.++|+++|++|||||||+|+|++..+. ....+++.+.......+++..+. +|||||+.++
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 79 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFV--DDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 79 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCccceeEEEEEeCCcEEEEEEEECCCchhh
Confidence 4589999999999999999999987653 34445555555677777877655 6999998754
No 125
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.47 E-value=1.5e-07 Score=84.60 Aligned_cols=59 Identities=20% Similarity=0.324 Sum_probs=42.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
+.++|+++|++|||||||+|+|+++.+.... + |.+.....+.+++..+.+|||||+.++
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~ 73 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS--P--TIGSNVEEIVINNTRFLMWDIGGQESL 73 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEE--C--CSCSSCEEEEETTEEEEEEECCC----
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCc--C--CCccceEEEEECCEEEEEEECCCCHhH
Confidence 5689999999999999999999987765322 2 222233456678889999999998753
No 126
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.47 E-value=1.3e-07 Score=86.53 Aligned_cols=62 Identities=27% Similarity=0.299 Sum_probs=43.8
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRT 425 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~ 425 (445)
...++|+++|++|||||||+|+|++..+.. ...+..+.++....+.+++. .+.+|||||+.+
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSE-RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCcHh
Confidence 345899999999999999999999887642 23344456677777788874 666999999864
No 127
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.47 E-value=2.1e-07 Score=82.04 Aligned_cols=62 Identities=23% Similarity=0.320 Sum_probs=45.7
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
..++++++|++|||||||+|+|++..+.. ...+.++.+.....+.+++. .+.+|||||+.++
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 77 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMA-DCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF 77 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS-SCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCeEEEEEEEECCCChHh
Confidence 45899999999999999999999887642 22233444555666666664 5669999998743
No 128
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.47 E-value=2.7e-07 Score=82.98 Aligned_cols=62 Identities=19% Similarity=0.209 Sum_probs=45.7
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
..++|+++|++|||||||+|+|++..+.. ...+..+.+.....+..++. .+.+|||||+.++
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 84 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTP-AFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERY 84 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC-CcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHH
Confidence 44799999999999999999999887643 23344445555555666654 5669999998754
No 129
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.47 E-value=1.9e-07 Score=81.57 Aligned_cols=61 Identities=25% Similarity=0.263 Sum_probs=43.4
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC--eeEEEEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG--YPVILLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g--~~v~l~DTpG~~~~ 426 (445)
.++++++|++|+|||||+|+|++..+.. ...+..+.+.....+.+++ ..+.+|||||+.++
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 68 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHE-FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHh
Confidence 4799999999999999999999876543 1223333444445555664 45669999998743
No 130
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.47 E-value=1.6e-07 Score=84.73 Aligned_cols=61 Identities=30% Similarity=0.388 Sum_probs=47.5
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC--eeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG--YPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g--~~v~l~DTpG~~~~ 426 (445)
..++++++|++|||||||+|+|++..+. ..+.+|+.+.....+.+++ ..+.+|||||+.++
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 79 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 79 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC--CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCCcch
Confidence 4479999999999999999999988653 4455666666666677776 45669999998754
No 131
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.47 E-value=3.9e-07 Score=88.20 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=25.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccce
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQIS 391 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~ 391 (445)
...+|+++|.+|||||||+|+|++..+.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence 4579999999999999999999998764
No 132
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.47 E-value=1.9e-07 Score=81.69 Aligned_cols=60 Identities=25% Similarity=0.389 Sum_probs=42.9
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC--eeEEEEECCCCCc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG--YPVILLDTAGLRT 425 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g--~~v~l~DTpG~~~ 425 (445)
.++++++|++|+|||||+|+|++..+.. ...+....+.....+.+++ ..+.+|||||+.+
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 67 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDP-NINPTIGASFMTKTVQYQNELHKFLIWDTAGLER 67 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCceeEEEEEEEEEECCeEEEEEEEcCCCchh
Confidence 4799999999999999999999887532 2223333344444555665 4566999999864
No 133
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.47 E-value=8.7e-08 Score=98.48 Aligned_cols=64 Identities=41% Similarity=0.555 Sum_probs=45.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe-eEEEEECCCCCcCC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY-PVILLDTAGLRTTT 427 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~-~v~l~DTpG~~~~~ 427 (445)
..++++++|.+|+|||||+|+|++..+..++..+++|.+.....+.+.+. ++.+|||||+.++.
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~ 97 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVG 97 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCccc
Confidence 34799999999999999999999998776788899999998888888766 88899999998654
No 134
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.46 E-value=2.1e-07 Score=84.77 Aligned_cols=61 Identities=23% Similarity=0.421 Sum_probs=46.8
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeE--EEEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPV--ILLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v--~l~DTpG~~~~ 426 (445)
.++++++|++|||||||+|+|++..+.. ...+..+.++....+.++|..+ .+|||||+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~ 67 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 67 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGT
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCchhh
Confidence 3789999999999999999999987643 3344555677777888888654 48999998643
No 135
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.46 E-value=1.4e-07 Score=85.94 Aligned_cols=63 Identities=29% Similarity=0.360 Sum_probs=44.0
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC--eeEEEEECCCCCcC
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG--YPVILLDTAGLRTT 426 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g--~~v~l~DTpG~~~~ 426 (445)
..+.++|+++|++|||||||+|+|++..+. ....+|+.+.....+.+++ ..+.+|||||+.++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 85 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEY 85 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTT
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccch
Confidence 345689999999999999999999988765 3344454444444454443 45679999998754
No 136
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.46 E-value=2e-07 Score=82.66 Aligned_cols=62 Identities=23% Similarity=0.238 Sum_probs=46.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
..++++++|++|+|||||+|+|++..+.. ...++.+.+.....+.+++. .+.+|||||+.++
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 74 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 74 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTT-TSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-cCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhh
Confidence 34799999999999999999999887643 23344455566666666654 5669999998743
No 137
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.46 E-value=1.7e-07 Score=83.69 Aligned_cols=61 Identities=25% Similarity=0.274 Sum_probs=43.9
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEE-EEEEEECC-----------eeEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVI-EKHLDIGG-----------YPVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~-~~~~~~~g-----------~~v~l~DTpG~~~ 425 (445)
..++|+++|++|||||||+|+|++..+.. ...+..+.++. ...+..++ ..+.+|||||+.+
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 82 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNS-KFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER 82 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCc-CcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence 34799999999999999999999877632 23333444444 44555554 3677999999864
No 138
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.46 E-value=7.1e-08 Score=98.07 Aligned_cols=65 Identities=29% Similarity=0.400 Sum_probs=56.5
Q ss_pred ccccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC-----------------eeEEEEECCCC
Q psy1007 361 RIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG-----------------YPVILLDTAGL 423 (445)
Q Consensus 361 ~~~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g-----------------~~v~l~DTpG~ 423 (445)
++.++.+++++|+||||||||+|.|++...+.++++|+||.+.....+.+.+ ..+.+|||||+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 4567899999999999999999999998765678999999999888888876 45789999998
Q ss_pred Cc
Q psy1007 424 RT 425 (445)
Q Consensus 424 ~~ 425 (445)
..
T Consensus 96 ~~ 97 (392)
T 1ni3_A 96 TK 97 (392)
T ss_dssp CC
T ss_pred cc
Confidence 73
No 139
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.45 E-value=2.5e-07 Score=83.86 Aligned_cols=62 Identities=24% Similarity=0.433 Sum_probs=49.4
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEE--EEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~~ 426 (445)
..++++++|++|||||||+|+|++..+.. ...+..+.++....+.++|..+. +|||||++..
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~ 91 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERY 91 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEECCCCcch
Confidence 34799999999999999999999887643 34455666777788888987655 6999998743
No 140
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.45 E-value=2.2e-07 Score=83.39 Aligned_cols=62 Identities=27% Similarity=0.364 Sum_probs=46.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
+.++|+++|++|||||||+|+|++..+.. ...+..+.+.....+.+++. .+.+|||||+.++
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 77 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDP-ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF 77 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCc-cCCCccceEEEEEEEEECCeEEEEEEEeCCCchhh
Confidence 45899999999999999999999877642 23344445565566666664 5669999998754
No 141
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.45 E-value=2.4e-07 Score=83.45 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=45.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEE--EEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI--LLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~ 425 (445)
+.++++++|++|||||||+|+|++..+.. ...+| .+.....+.+++..+. +|||||++.
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~~--~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 79 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQ--EESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPE 79 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCCC--CCCTT-CEEEEEEEEETTEEEEEEEEECSSSCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCC--CcCCC-cceEEEEEEECCEEEEEEEEECCCChh
Confidence 45899999999999999999999887643 23333 4444567788886554 799999874
No 142
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.45 E-value=2.6e-07 Score=83.90 Aligned_cols=60 Identities=23% Similarity=0.292 Sum_probs=44.6
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRT 425 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~ 425 (445)
.++|+++|++|||||||+|+|++..+.. ...+..+.++....+.+++. .+.+|||||+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTP-AFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCS-CCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCccceeEEEEEEEECCeEEEEEEEECCCchh
Confidence 4799999999999999999999887643 23333444555556666654 566999999864
No 143
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.44 E-value=1.9e-07 Score=85.22 Aligned_cols=62 Identities=21% Similarity=0.319 Sum_probs=42.1
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC--eeEEEEECCCCCc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG--YPVILLDTAGLRT 425 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g--~~v~l~DTpG~~~ 425 (445)
...++|+++|++|||||||+|+|++..+.. ...++++.++....+.+++ ..+.+|||||+..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 86 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQ-DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCc-cCCCcccceeEEEEEEECCeeeEEEEEcCCCcHh
Confidence 345899999999999999999999887643 3445556677777777787 4667999999754
No 144
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.44 E-value=1.2e-07 Score=84.03 Aligned_cols=61 Identities=26% Similarity=0.376 Sum_probs=41.9
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEEC-C--eeEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG-G--YPVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~-g--~~v~l~DTpG~~~ 425 (445)
..++|+++|++|+|||||+|+|++..+.. ...++++.++....+.++ + ..+.+|||||+..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 70 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQ-QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER 70 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCT-TC---CCCSCEEEEECCSSSCCEEEEEECCC----
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCccceEEEEEEEEEcCCcEEEEEEEECCCChH
Confidence 34799999999999999999999877642 333445566666667665 2 4677999999764
No 145
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.44 E-value=2.4e-07 Score=85.44 Aligned_cols=61 Identities=26% Similarity=0.362 Sum_probs=39.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
+.++|+++|++|||||||+|+|++..+. ....+|+.+.....+.+++. .+.+|||||+.++
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~ 95 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFP--ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDY 95 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCchhh
Confidence 4589999999999999999999988764 34445666666666777776 4569999998743
No 146
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.44 E-value=2.5e-07 Score=84.16 Aligned_cols=61 Identities=31% Similarity=0.387 Sum_probs=40.9
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~ 425 (445)
+.++|+++|++|||||||+|+|++..+.. ...+..+.+.....+.+++. .+.+|||||+.+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 89 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRE-NISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC-----------CEEEEEEETTEEEEEEEEECTTCTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCc-cCCCCccceeEEEEEEECCEEEEEEEEECCCCcc
Confidence 46899999999999999999999877532 22233334455555666764 466999999874
No 147
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.43 E-value=3.7e-07 Score=82.65 Aligned_cols=60 Identities=27% Similarity=0.323 Sum_probs=45.4
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~ 425 (445)
+.++|+++|++|||||||+|+|++..+.. .+.+|+.+.....+.+++. .+.+|||||+.+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIW--EYDPTLESTYRHQATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCCCCceEEEEEEECCEEEEEEEEECCCCCc
Confidence 45899999999999999999999887642 3344444444555666764 466999999984
No 148
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.43 E-value=2.8e-07 Score=84.39 Aligned_cols=60 Identities=23% Similarity=0.321 Sum_probs=42.1
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
.++|+++|++|||||||+|+|++..+.. ...+|+.+.....+.+++. .+.+|||||+.++
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 86 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCC--cCCCcccceEEEEEEECCEEEEEEEEECCCcHHH
Confidence 4799999999999999999999887643 3334444444445667775 5569999998754
No 149
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.42 E-value=2.3e-07 Score=85.01 Aligned_cols=61 Identities=28% Similarity=0.331 Sum_probs=47.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
..++++++|++|||||||+|+|++..+. ..+.+|+.+.....+.+++. .+.+|||||+.++
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 70 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDY 70 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--ccCCCccceeEEEEEEECCEEEEEEEEECCCcHHH
Confidence 3479999999999999999999987763 34555666665666667764 5669999999754
No 150
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.41 E-value=2.8e-07 Score=84.58 Aligned_cols=58 Identities=22% Similarity=0.253 Sum_probs=44.0
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEEC---CeeEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG---GYPVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~---g~~v~l~DTpG~~~ 425 (445)
+.++|+++|++|||||||+|+|++..+. ..+++++.+... +.++ +..+.+|||||+.+
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~ 66 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR--DTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHES 66 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCC--CBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc--cccCCcceeeEE--EEecCCCccEEEEEECCCChh
Confidence 4579999999999999999999988753 344555555544 5556 56788999999874
No 151
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.41 E-value=1.3e-07 Score=85.53 Aligned_cols=62 Identities=24% Similarity=0.386 Sum_probs=42.7
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcccccee-eecCCCccceEEEEEEEEC--CeeEEEEECCCCCcC
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISI-VTSIPGTTRDVIEKHLDIG--GYPVILLDTAGLRTT 426 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~~~~-vs~~~~tt~~~~~~~~~~~--g~~v~l~DTpG~~~~ 426 (445)
.+.++|+++|++|+|||||+|+|++..+.. +....+++ .....+.++ +..+.+|||||+.++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~ 85 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGAS--FMTKTVPCGNELHKFLIWDTAGQERF 85 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEE--EEEEEEECSSSEEEEEEEEECCSGGG
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCccee--EEEEEEEeCCEEEEEEEEcCCCchhh
Confidence 345899999999999999999999877532 22222333 333344444 346779999998643
No 152
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.41 E-value=2.8e-07 Score=82.59 Aligned_cols=60 Identities=22% Similarity=0.310 Sum_probs=43.7
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
.++++++|++|||||||+|+|++..+. ..+.+|........+.+++. .+.+|||||+..+
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 68 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 68 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCChhh
Confidence 478999999999999999999988763 23334444444445566653 5569999998643
No 153
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.41 E-value=1.6e-07 Score=83.99 Aligned_cols=55 Identities=31% Similarity=0.461 Sum_probs=43.8
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
++++++|++|||||||+|+|++..+. ++..+++|.+.....+ + .+.+|||||+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~ 56 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIEIEW--K--NHKIIDMPGFGF 56 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCEEEEE--T--TEEEEECCCBSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc-cCCCCCccceeEEEec--C--CEEEEECCCccc
Confidence 58999999999999999999998754 4666777777665433 3 678999999753
No 154
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.38 E-value=5e-07 Score=82.48 Aligned_cols=62 Identities=26% Similarity=0.411 Sum_probs=39.0
Q ss_pred ccccCcEEEEEcCCCCChhHHhhhhcccc-ceeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 361 RIRSGIKSVIVGEPNVGKSSLMNFLCQKQ-ISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 361 ~~~~~~~v~lvG~~~vGKSsLln~l~~~~-~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
.+.++.+++++|++|+|||||+|+|++.. ...+++.+|+|..... +.+++ .+.+|||||+..
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~~~-~~~l~Dt~G~~~ 84 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEVAD-GKRLVDLPGYGY 84 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE--EEEET-TEEEEECCCCC-
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEecC-CEEEEECcCCcc
Confidence 34578899999999999999999999876 3344555667665433 33333 567999999974
No 155
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.37 E-value=5.2e-07 Score=81.29 Aligned_cols=60 Identities=22% Similarity=0.262 Sum_probs=42.9
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~ 425 (445)
..++|+++|++|||||||+|+|++..+.. ...++........+..++. .+.+|||||+.+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 68 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRD--TYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQ 68 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCC--TTSCCCCEEEEEEEEETTEEEEEEEEECCGGGS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCC--cccCccccceeEEEEECCEEEEEEEEeCCChHH
Confidence 45899999999999999999999877632 2233333333444555654 556999999874
No 156
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.37 E-value=3.7e-07 Score=84.35 Aligned_cols=62 Identities=21% Similarity=0.253 Sum_probs=44.0
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
...++|+++|++|||||||+|+|++..+. ..+.+|+.+.....+.+++. .+.+|||||+.++
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 88 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 88 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCC--CCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhH
Confidence 35689999999999999999999988764 34445554444555556554 5569999998754
No 157
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.36 E-value=9.2e-08 Score=84.95 Aligned_cols=61 Identities=31% Similarity=0.320 Sum_probs=35.0
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeE--EEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPV--ILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v--~l~DTpG~~~~ 426 (445)
..++++++|++|+|||||+|+|++..+. ....+|+.+.....+.+++..+ .+|||||+.++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 69 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDY 69 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC------------CBCCCC-------CEEECCCC-CTT
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhh
Confidence 4589999999999999999999987753 3344444433333334454444 49999998754
No 158
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.34 E-value=4.3e-07 Score=82.74 Aligned_cols=61 Identities=28% Similarity=0.419 Sum_probs=44.2
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
..++|+++|++|||||||+|+|++..+.. ...+.++.+.. ..+.+++. .+.+|||||+.++
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~ 86 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDY 86 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCS-SCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCcccceEE-EEEEECCEEEEEEEEECCCchhH
Confidence 34799999999999999999999887643 22333334433 44666775 5569999998653
No 159
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.34 E-value=4.7e-07 Score=83.27 Aligned_cols=61 Identities=21% Similarity=0.305 Sum_probs=44.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC--eeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG--YPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g--~~v~l~DTpG~~~~ 426 (445)
..++|+++|++|||||||+|+|++..+. ..+.+|........+.+++ ..+.+|||||+..+
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 89 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 89 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhh
Confidence 4579999999999999999999988764 2333444334444556665 35669999998643
No 160
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C*
Probab=98.33 E-value=6.1e-07 Score=83.28 Aligned_cols=121 Identities=12% Similarity=0.071 Sum_probs=76.8
Q ss_pred CceEEEEEEecccHHHHH---HHhcCCCCCCCCCCceeEEeeeecCCCCce---ecceEEEeecc---------------
Q psy1007 39 KCGVSVIRVSGPDTLNAL---KSMACYPDQKVPKPRYASLRNIVDPVSKVV---LDEGLCLWFPR--------------- 97 (445)
Q Consensus 39 ~~ai~viRiSG~~a~~i~---~~l~~~~~~~~~~~~~~~~~~~~d~~~g~~---iD~~i~~~~~~--------------- 97 (445)
.|-.+.++|+||++.+++ +++++. . +.++. |.+ +||.+++++.+
T Consensus 35 vShmg~~~v~G~~a~~~l~~l~~~~~~---~-----------l~~~~-g~~~~~~dDl~v~rl~~d~~llv~na~~~d~~ 99 (206)
T 1x31_C 35 VAFTTQLGLRAVPGSTGHAALAAATGV---G-----------LPAAV-GEVAGDVSGTAVLWLGPDEFLLAAEENPALLD 99 (206)
T ss_dssp CCSCEEEEEECCTTSHHHHHHHHHSSS---C-----------CCCST-TBEEECTTSCEEEEEETTEEEEEESSCTHHHH
T ss_pred CCCCcEEEEEeCChhHHHHHHHHHhCc---C-----------CCCCC-CEEEEecCCEEEEEEcCCEEEEEcCchHHHHH
Confidence 667788999999998554 444431 1 11222 445 78888888765
Q ss_pred --------------cccCcceEeeccCCChHHHhhhhccCCCCCCCCCeEEEeeeeecCCCCeeecCceeeecCCCCCcC
Q psy1007 98 --------------HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFT 163 (445)
Q Consensus 98 --------------~~~~giavIrisGp~a~~il~~l~~~~~~~~~~~rra~~~~~~d~~~~~~~d~~~~~~f~~p~syT 163 (445)
+...+.++++||||.+..++++++..+..+..++...+....++ +. -.+.++ |
T Consensus 100 ~l~~~l~~~~v~v~d~s~~~a~lalqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~v~---g~-------~v~i~R---t 166 (206)
T 1x31_C 100 TLQGALGQEPGQVLDLSANRSVLQLEGPAAALVLRKSCPADLHPREFGVNRAITTSLA---NI-------PVLLWR---T 166 (206)
T ss_dssp HHHHHHTTSSSEEEECTTTBCCEEEESTTHHHHHTTTCCSCCCTTTSCTTEEEEEEET---TE-------EEEEEE---E
T ss_pred HHHHhcCcCcEEEEECCCCEEEEEEECHhHHHHHHhhCcccCCcccCCCCcEEEEEEc---Ce-------EEEEEE---c
Confidence 11235789999999999999999754442211332222222222 10 123334 5
Q ss_pred CCceeEEEecCcHHHHHHHHHHHhcC
Q psy1007 164 GEDCCEFQVHGSIAVINAILGALTKL 189 (445)
Q Consensus 164 GEd~~Ei~~hg~~~v~~~i~~~l~~~ 189 (445)
|||++||+|+.+.+ ..+|+.|...
T Consensus 167 gEdGfEI~v~~~~A--~~lw~~L~~a 190 (206)
T 1x31_C 167 GEQSWRILPRASFT--EHTVHWLIDA 190 (206)
T ss_dssp ETTEEEEECBGGGH--HHHHHHHHHH
T ss_pred CCCeEEEEEEHHHH--HHHHHHHHHH
Confidence 59999999999998 6699999754
No 161
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.33 E-value=3e-07 Score=82.57 Aligned_cols=60 Identities=25% Similarity=0.289 Sum_probs=36.9
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeec-CCCccceEEEEEEEE-----CCeeEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTS-IPGTTRDVIEKHLDI-----GGYPVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~-~~~tt~~~~~~~~~~-----~g~~v~l~DTpG~~~ 425 (445)
++++++|++|||||||+|+|++......+. .+.++.++....+.+ ....+.+|||||+++
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 68 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE 68 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHH
Confidence 689999999999999999999853211122 233345555444433 244667999999864
No 162
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.32 E-value=1.8e-07 Score=84.85 Aligned_cols=60 Identities=32% Similarity=0.428 Sum_probs=22.9
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc--cceeeecCCCcc-ceEEEEEEEECC----eeEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK--QISIVTSIPGTT-RDVIEKHLDIGG----YPVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~--~~~~vs~~~~tt-~~~~~~~~~~~g----~~v~l~DTpG~~~ 425 (445)
..++|+++|++|||||||+|+|++. .+. +...+|+ .++....+.+++ ..+.+|||||+.+
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 85 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFL--KDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDL 85 (208)
T ss_dssp EEEEEEEC------------------------------------CEEEECTTSSEEEEEEEEETTTTHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCccc--CCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHH
Confidence 4589999999999999999999988 442 3444444 467777777775 3677999999853
No 163
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.31 E-value=5.7e-07 Score=82.73 Aligned_cols=63 Identities=17% Similarity=0.154 Sum_probs=42.0
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEEC-C--eeEEEEECCCCCcCC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG-G--YPVILLDTAGLRTTT 427 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~-g--~~v~l~DTpG~~~~~ 427 (445)
..++|+++|++|||||||+|+|++..+.. ...+..+..........+ + ..+.+|||||+....
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 75 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEK-NYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKA 75 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTC-EEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhc
Confidence 34799999999999999999999876542 122222223333333332 2 457799999987543
No 164
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.31 E-value=2.6e-07 Score=83.12 Aligned_cols=58 Identities=28% Similarity=0.360 Sum_probs=38.7
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcccccee--eecCCCccceEEEEEEEECCeeEEEEECCCCCcCC
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISI--VTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT 427 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~~~~--vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~ 427 (445)
...++++++|++|||||||+|+|++..+.. .+..++++.+. .+..+.+|||||+..+.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~~ 105 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKLR 105 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC-------CCTTCSEEEETTCCBSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-------cCCeEEEEECCCCchHH
Confidence 356899999999999999999999876432 12223333322 45566799999998653
No 165
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.31 E-value=2.8e-07 Score=85.21 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=43.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccce-eeecCCCccceEEEEEEEECC--eeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQIS-IVTSIPGTTRDVIEKHLDIGG--YPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~-~vs~~~~tt~~~~~~~~~~~g--~~v~l~DTpG~~~~ 426 (445)
..++|+++|++|||||||+|+|+.+.+. .+....+++..... +.+++ ..+.+|||||+..+
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~~~i~Dt~G~~~~ 77 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLV--FHTNRGPIKFNVWDTAGQEKF 77 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEE--EEETTEEEEEEEEEECSGGGT
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEE--EEECCEEEEEEEEeCCChHHH
Confidence 4589999999999999999997765432 33444555555444 34444 45669999998754
No 166
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.61 E-value=9.8e-08 Score=87.07 Aligned_cols=61 Identities=31% Similarity=0.385 Sum_probs=46.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEE--EEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~~ 426 (445)
+.++|+++|++|||||||+|+|++..+. ....+|+.+.....+.+++..+. +|||||+.++
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 91 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 91 (204)
Confidence 5689999999999999999999987653 34455665555555666665444 9999998754
No 167
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.28 E-value=2.7e-07 Score=92.21 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=50.5
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC-eeEEEEECCCCCc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG-YPVILLDTAGLRT 425 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g-~~v~l~DTpG~~~ 425 (445)
.+|+++|.||||||||+|+|++.... +++++++|.+.....+.+++ ..+.+|||||+.+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~-i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~ 218 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPK-IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE 218 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCE-ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCc-cccCCccccCceEEEEEeCCCceEEEecCCCCcc
Confidence 47899999999999999999987753 47888899888888888875 7888999999753
No 168
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.27 E-value=1.1e-06 Score=86.02 Aligned_cols=62 Identities=32% Similarity=0.397 Sum_probs=51.0
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEE--EEECCCCCcC
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVI--LLDTAGLRTT 426 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~--l~DTpG~~~~ 426 (445)
...++++++|++|+|||||+|++++..+. ....+|+.+.....+.+++..+. +|||||+..+
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 216 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 216 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCC--CSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGG
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCC--cccCCcccceeEEEEEECCEEEEEEEEeCCCchhh
Confidence 45689999999999999999999987763 45667777777777888887766 9999998754
No 169
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.27 E-value=1.3e-06 Score=86.75 Aligned_cols=61 Identities=18% Similarity=0.299 Sum_probs=45.1
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCC
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT 427 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~ 427 (445)
++.++|+++|++|||||||+|+|++..+.. ..+ |.+.....+..++..+.+|||||+..+.
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~--~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 223 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQDKIR 223 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEE--EEE--ETTEEEEEEEETTEEEEEEECC-----C
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCC--ccc--ccceEEEEEecCcEEEEEEECCCCHhHH
Confidence 356899999999999999999999888643 333 5555566677888899999999987543
No 170
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.27 E-value=4.6e-07 Score=83.30 Aligned_cols=60 Identities=25% Similarity=0.280 Sum_probs=43.5
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEEC------------CeeEEEEECCCCC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG------------GYPVILLDTAGLR 424 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~------------g~~v~l~DTpG~~ 424 (445)
..++|+++|++|||||||+|+|++..+.. ...+.++.++....+.++ ...+.+|||||+.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 95 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNP-KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE 95 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCC-EEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCc-CCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH
Confidence 45899999999999999999999877632 223334445555555555 3467799999975
No 171
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.21 E-value=1e-06 Score=79.83 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=38.9
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEE-ECCeeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLD-IGGYPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~-~~g~~v~l~DTpG~~~~ 426 (445)
+.++++++|++|||||||+|.+.+......+.....+.......+. .....+.+|||||+..+
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 82 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDF 82 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHH
Confidence 5689999999999999999988875332211111112222221121 12357789999999764
No 172
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.20 E-value=4.5e-06 Score=81.47 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=24.4
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQI 390 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~ 390 (445)
+-.+|+++|.+|+|||||+|+|++..+
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 346899999999999999999999876
No 173
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.20 E-value=6e-07 Score=90.56 Aligned_cols=60 Identities=33% Similarity=0.391 Sum_probs=46.9
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEEC---------------------CeeEEEEECCCCC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG---------------------GYPVILLDTAGLR 424 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~---------------------g~~v~l~DTpG~~ 424 (445)
++++++|.||||||||+|+|++.. ..+++++++|.+.......+. +..+.+|||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 578999999999999999999875 345778888877665555432 3467899999998
Q ss_pred cC
Q psy1007 425 TT 426 (445)
Q Consensus 425 ~~ 426 (445)
+.
T Consensus 81 ~~ 82 (368)
T 2dby_A 81 KG 82 (368)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 174
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.19 E-value=8.6e-07 Score=94.50 Aligned_cols=60 Identities=33% Similarity=0.334 Sum_probs=43.5
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEE-------CCeeEEEEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDI-------GGYPVILLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~-------~g~~v~l~DTpG~~~~ 426 (445)
..+|+++|.||||||||+|+|++..... ..+++|++.......+ ++..+.|+||||+.+.
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 3678999999999999999999987532 3444544443333222 5678899999999854
No 175
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.19 E-value=1.3e-06 Score=91.23 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=48.4
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
+.++++++|.+|||||||+|+|++..+. ... .|.+.....+.+++..+.+|||||++++
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~--~~~--~T~~~~~~~~~~~~~~~~l~Dt~G~~~~ 379 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSV--TTI--PTVGFNVETVTYKNVKFNVWDVGGQDKI 379 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCC--CCC--CCSSEEEEEEESSSCEEEEEEECCCGGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCC--CcC--CccceeEEEEEeCCEEEEEEECCCcHHH
Confidence 4589999999999999999999988753 232 3666777778888889999999998754
No 176
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.18 E-value=2.3e-06 Score=85.64 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=24.8
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccce
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQIS 391 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~ 391 (445)
...+|+++|.+|||||||+|+|++..+.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 3468999999999999999999998764
No 177
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.16 E-value=4.4e-07 Score=81.83 Aligned_cols=62 Identities=21% Similarity=0.222 Sum_probs=43.9
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEEC--CeeEEEEECCCCCc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG--GYPVILLDTAGLRT 425 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~--g~~v~l~DTpG~~~ 425 (445)
...++|+++|++|||||||+|+|++..+.. ...+..+.+.....+.++ +..+.+|||||+..
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 84 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTP-AFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER 84 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCC-CEEEEETTTEEEEEEEETTTTEEEEEECHHHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCc-ccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHH
Confidence 456899999999999999999999877532 222223344444455554 45677999999753
No 178
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.13 E-value=1.5e-06 Score=89.67 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=49.6
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcccccee------------------------------eecCCCccceEEEEEEEECC
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISI------------------------------VTSIPGTTRDVIEKHLDIGG 412 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~~~~------------------------------vs~~~~tt~~~~~~~~~~~g 412 (445)
+..++++++|.+|+|||||+|+|+...... .....++|.+.....+..++
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 355799999999999999999996542111 11225688888888888888
Q ss_pred eeEEEEECCCCCcC
Q psy1007 413 YPVILLDTAGLRTT 426 (445)
Q Consensus 413 ~~v~l~DTpG~~~~ 426 (445)
..+.+|||||++++
T Consensus 95 ~~~~iiDTPGh~~f 108 (439)
T 3j2k_7 95 KHFTILDAPGHKSF 108 (439)
T ss_pred eEEEEEECCChHHH
Confidence 99999999998754
No 179
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.11 E-value=9.5e-07 Score=81.21 Aligned_cols=56 Identities=27% Similarity=0.355 Sum_probs=40.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceee--ecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIV--TSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~v--s~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
..++++++|++|+|||||+|+|++..+... +..++++.+. .+..+.+|||||+..+
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~ 68 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKL 68 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-------GGSSCEEEECCCCGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-------eCceEEEEECCCcHHH
Confidence 457999999999999999999998765321 1222233322 4556789999999754
No 180
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.06 E-value=1.5e-06 Score=93.46 Aligned_cols=63 Identities=22% Similarity=0.293 Sum_probs=49.7
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccccceeee------------------------------cCCCccceEEEEEEEECC
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT------------------------------SIPGTTRDVIEKHLDIGG 412 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs------------------------------~~~~tt~~~~~~~~~~~g 412 (445)
+..++|+++|.+|+|||||+|+|++....... ...|+|.+.....+..++
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 35689999999999999999999876332111 125778888777788888
Q ss_pred eeEEEEECCCCCc
Q psy1007 413 YPVILLDTAGLRT 425 (445)
Q Consensus 413 ~~v~l~DTpG~~~ 425 (445)
..+.||||||+++
T Consensus 245 ~~~~iiDTPG~e~ 257 (611)
T 3izq_1 245 ANFTIVDAPGHRD 257 (611)
T ss_dssp CEEEEEECCSSSC
T ss_pred ceEEEEECCCCcc
Confidence 8999999999874
No 181
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.03 E-value=1.9e-06 Score=89.95 Aligned_cols=63 Identities=22% Similarity=0.280 Sum_probs=47.6
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccc------------------------------eeeecCCCccceEEEEEEEECCe
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQI------------------------------SIVTSIPGTTRDVIEKHLDIGGY 413 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~------------------------------~~vs~~~~tt~~~~~~~~~~~g~ 413 (445)
..++++++|.+|+|||||+|+|++... .......++|.+.....+..++.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 458999999999999999999976511 01123357788888777888888
Q ss_pred eEEEEECCCCCcC
Q psy1007 414 PVILLDTAGLRTT 426 (445)
Q Consensus 414 ~v~l~DTpG~~~~ 426 (445)
.+.+|||||++++
T Consensus 112 ~~~iiDTPG~~~f 124 (483)
T 3p26_A 112 NFTIVDAPGHRDF 124 (483)
T ss_dssp EEEEECCCCCGGG
T ss_pred eEEEEECCCcHHH
Confidence 9999999999753
No 182
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.01 E-value=1.4e-06 Score=77.93 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=22.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
..++|+++|++|||||||+|.+.+..
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhc
Confidence 44899999999999999998776543
No 183
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.98 E-value=6.3e-06 Score=84.40 Aligned_cols=63 Identities=24% Similarity=0.243 Sum_probs=52.7
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECC-eeEEEEECCCCCc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG-YPVILLDTAGLRT 425 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g-~~v~l~DTpG~~~ 425 (445)
++.+..++++|++|+|||||+|+|++... .+..++++|.+.....+.+++ ..+.+|||||+.+
T Consensus 154 lk~g~~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 154 LMLIADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 217 (416)
T ss_dssp ECCSCSEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEecccccc
Confidence 34567899999999999999999998764 457788888888887888775 7788999999963
No 184
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.96 E-value=6.3e-07 Score=94.65 Aligned_cols=63 Identities=22% Similarity=0.338 Sum_probs=50.6
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEE-CCeeEEEEECCCCCcCC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDI-GGYPVILLDTAGLRTTT 427 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~-~g~~v~l~DTpG~~~~~ 427 (445)
+..+|+++|++|+|||||+|+|++..+.. ...+++|.++....+.+ ++..+.+|||||...+.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~-~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~ 66 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAA-MEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFS 66 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHH-SSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccc-ccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHH
Confidence 34689999999999999999999887654 46677888776666665 56678899999987654
No 185
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.95 E-value=1.2e-06 Score=93.65 Aligned_cols=63 Identities=21% Similarity=0.222 Sum_probs=31.2
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceee------------------------------ecCCCccceEEEEEEEECCe
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIV------------------------------TSIPGTTRDVIEKHLDIGGY 413 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~v------------------------------s~~~~tt~~~~~~~~~~~g~ 413 (445)
..++++++|.+|+|||||+|+|+....... ...+|+|.+.....+..++.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 446899999999999999999975321111 12457888888888888888
Q ss_pred eEEEEECCCCCcC
Q psy1007 414 PVILLDTAGLRTT 426 (445)
Q Consensus 414 ~v~l~DTpG~~~~ 426 (445)
.+.||||||+.++
T Consensus 256 ~i~iiDTPGh~~f 268 (592)
T 3mca_A 256 IYEIGDAPGHRDF 268 (592)
T ss_dssp ---CCEEESSSEE
T ss_pred EEEEEECCChHHH
Confidence 8889999998754
No 186
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.93 E-value=4.5e-06 Score=83.93 Aligned_cols=59 Identities=24% Similarity=0.353 Sum_probs=31.4
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeecC--------CCccceEEEEEEEECCe--eEEEEECCCCC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSI--------PGTTRDVIEKHLDIGGY--PVILLDTAGLR 424 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~--------~~tt~~~~~~~~~~~g~--~v~l~DTpG~~ 424 (445)
++++++|++|+|||||+|+|++......... ++++.+.....+..++. .+.+|||||+.
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~g 106 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 106 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-----
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccc
Confidence 6899999999999999999877643321211 12223333333444554 56699999995
No 187
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.93 E-value=5.1e-06 Score=82.29 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=37.7
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT 427 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~ 427 (445)
|++++|++|||||||++.+.++.........+.|..+....+. ...++.||||||++++.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~ 60 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYF 60 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhcc
Confidence 5899999999999999987765332111112223222222231 23567799999999763
No 188
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.90 E-value=3.3e-06 Score=89.14 Aligned_cols=63 Identities=22% Similarity=0.231 Sum_probs=46.1
Q ss_pred CcEEEEEcCCCCChhHHhhhhcccc------------------c---eeeecCCCccceEEEEEEEECCeeEEEEECCCC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQ------------------I---SIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGL 423 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~------------------~---~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~ 423 (445)
-.+++++|.+|+|||||+|+|+... . .......++|.......+.+++..+.||||||+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 3589999999999999999996211 0 001112456666666778888999999999999
Q ss_pred CcCC
Q psy1007 424 RTTT 427 (445)
Q Consensus 424 ~~~~ 427 (445)
.++.
T Consensus 93 ~df~ 96 (528)
T 3tr5_A 93 ADFT 96 (528)
T ss_dssp TTCC
T ss_pred hhHH
Confidence 8653
No 189
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.89 E-value=2.5e-05 Score=78.15 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCChhHHhhhhccccc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQI 390 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~ 390 (445)
.+|+++|++|+|||||+|+|++..+
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCc
Confidence 3899999999999999999999765
No 190
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.88 E-value=6.8e-06 Score=82.88 Aligned_cols=51 Identities=25% Similarity=0.377 Sum_probs=41.6
Q ss_pred EEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
+++++|.+++|||||+|+|+ ..++|.+.....+..++..+.+|||||+.++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f 73 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKT 73 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTC
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHH
Confidence 89999999999999999998 1245555555666677888899999999854
No 191
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.83 E-value=1.6e-05 Score=84.25 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=31.0
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccce--eeecCCCccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQIS--IVTSIPGTTR 401 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~--~vs~~~~tt~ 401 (445)
...+|+++|.+|+|||||+|+|++..+. .++..++|++
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~ 103 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC 103 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce
Confidence 4579999999999999999999998864 3566666654
No 192
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.82 E-value=4.1e-06 Score=86.88 Aligned_cols=61 Identities=30% Similarity=0.402 Sum_probs=45.6
Q ss_pred CcEEEEEcCCCCChhHHhhhhcccc--ce----------------------ee------ecCCCccceEEEEEEEECCee
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQ--IS----------------------IV------TSIPGTTRDVIEKHLDIGGYP 414 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~--~~----------------------~v------s~~~~tt~~~~~~~~~~~g~~ 414 (445)
.++++++|.+|+|||||+|+|++.. +. .+ ....++|.+.....+..++..
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 4789999999999999999998641 10 00 112467777666667777888
Q ss_pred EEEEECCCCCc
Q psy1007 415 VILLDTAGLRT 425 (445)
Q Consensus 415 v~l~DTpG~~~ 425 (445)
+.+|||||+.+
T Consensus 87 ~~iiDtPGh~~ 97 (458)
T 1f60_A 87 VTVIDAPGHRD 97 (458)
T ss_dssp EEEEECCCCTT
T ss_pred EEEEECCCcHH
Confidence 89999999874
No 193
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.81 E-value=2.6e-06 Score=85.25 Aligned_cols=24 Identities=21% Similarity=0.547 Sum_probs=22.2
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.+..++++|+||+|||||+|+|++
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 194
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.80 E-value=1.6e-05 Score=81.81 Aligned_cols=63 Identities=24% Similarity=0.269 Sum_probs=43.5
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcccccee----------eecC----------------------CCccceEEEEEEEEC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISI----------VTSI----------------------PGTTRDVIEKHLDIG 411 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~----------vs~~----------------------~~tt~~~~~~~~~~~ 411 (445)
..++++++|.+|+|||||+|+|++..... .+.. .+.|.+.....+..+
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 34799999999999999999998653111 1111 234555555556667
Q ss_pred CeeEEEEECCCCCcC
Q psy1007 412 GYPVILLDTAGLRTT 426 (445)
Q Consensus 412 g~~v~l~DTpG~~~~ 426 (445)
+..+.+|||||+.++
T Consensus 103 ~~~~~iiDtpGh~~f 117 (434)
T 1zun_B 103 KRKFIIADTPGHEQY 117 (434)
T ss_dssp SEEEEEEECCCSGGG
T ss_pred CceEEEEECCChHHH
Confidence 888889999998754
No 195
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.79 E-value=2.5e-06 Score=89.31 Aligned_cols=63 Identities=22% Similarity=0.344 Sum_probs=48.7
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEEEEEECCeeEEEEECCCCCcCC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT 427 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~ 427 (445)
+..+++++|++++|||||+++|.+..+.. +..+++|.+.....+.+++..+.+|||||...+.
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~-~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~ 65 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVAS-GEAGGITQHIGAYHVETENGMITFLDTPGHAAFT 65 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSB-TTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCcc-ccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHH
Confidence 34689999999999999999999866532 4445667666555566677788899999997664
No 196
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.79 E-value=8.7e-06 Score=82.92 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=46.4
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc--------cceee--------ecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK--------QISIV--------TSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~--------~~~~v--------s~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
..++++++|.+|+|||||+|+|++. .+... ....++|.+.....+..++..+.+|||||+.++
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 4579999999999999999999873 11000 013456777766666667788899999999854
No 197
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.77 E-value=8.8e-06 Score=85.89 Aligned_cols=62 Identities=21% Similarity=0.251 Sum_probs=37.7
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccceeeecCCCccceEEEE------EEEEC----CeeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEK------HLDIG----GYPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~~tt~~~~~~------~~~~~----g~~v~l~DTpG~~~~ 426 (445)
..++|+++|.+|||||||+|+|++..+.. ...+.+..++... .+.++ +..+.+|||||+...
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~-~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~ 111 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDP-KESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIM 111 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHH
Confidence 55899999999999999999999887642 2222223333322 11122 467889999998754
No 198
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.71 E-value=7.5e-06 Score=84.26 Aligned_cols=62 Identities=21% Similarity=0.323 Sum_probs=40.0
Q ss_pred CcEEEEEcCCCCChhHHhhhhcccc--cee----------------------------eecCCCccceEEEEEEEECCee
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQ--ISI----------------------------VTSIPGTTRDVIEKHLDIGGYP 414 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~--~~~----------------------------vs~~~~tt~~~~~~~~~~~g~~ 414 (445)
.++++++|.+|+|||||+|+|+... +.. .....++|.+.....+..++..
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~ 85 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF 85 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeE
Confidence 4789999999999999999998641 100 0113567777776677777888
Q ss_pred EEEEECCCCCcC
Q psy1007 415 VILLDTAGLRTT 426 (445)
Q Consensus 415 v~l~DTpG~~~~ 426 (445)
+.+|||||+.++
T Consensus 86 ~~iiDtpG~~~f 97 (435)
T 1jny_A 86 FTIIDAPGHRDF 97 (435)
T ss_dssp EEECCCSSSTTH
T ss_pred EEEEECCCcHHH
Confidence 999999999854
No 199
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.71 E-value=2.1e-05 Score=82.95 Aligned_cols=64 Identities=17% Similarity=0.172 Sum_probs=42.8
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccce---------------eee------cCCCccceEEEEEEEECCeeEEEEECCC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQIS---------------IVT------SIPGTTRDVIEKHLDIGGYPVILLDTAG 422 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~---------------~vs------~~~~tt~~~~~~~~~~~g~~v~l~DTpG 422 (445)
+..+++++|.+|+|||||+|+|+..... .+. ...++|.+.....+.+++..+.||||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 4478999999999999999999863110 011 1223444444556777889999999999
Q ss_pred CCcCC
Q psy1007 423 LRTTT 427 (445)
Q Consensus 423 ~~~~~ 427 (445)
+.++.
T Consensus 92 ~~df~ 96 (529)
T 2h5e_A 92 HEDFS 96 (529)
T ss_dssp STTCC
T ss_pred ChhHH
Confidence 97553
No 200
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.69 E-value=1.6e-05 Score=82.94 Aligned_cols=62 Identities=23% Similarity=0.283 Sum_probs=42.0
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcccc----c--eeeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQ----I--SIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~----~--~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
+.++++++|.+++|||||+|+|++.. . ...+...++|.+.....+.+++..+.+|||||..+
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~ 85 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHAD 85 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHH
Confidence 45899999999999999999999876 1 12244567787776666777888999999999863
No 201
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.65 E-value=3.1e-05 Score=78.70 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=44.8
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccc-------e--------eeecCCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQI-------S--------IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~-------~--------~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
+.++++++|.+++|||||+++|++... . ......+.|.+.....+..++..+.+|||||+.+
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~ 78 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD 78 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHH
Confidence 347899999999999999999987410 0 0012345666665555655678888999999864
No 202
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.57 E-value=1.9e-05 Score=82.08 Aligned_cols=64 Identities=22% Similarity=0.235 Sum_probs=37.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcccc--c----------------------eeee------cCCCccceEEEEEEEECCe
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQ--I----------------------SIVT------SIPGTTRDVIEKHLDIGGY 413 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~--~----------------------~~vs------~~~~tt~~~~~~~~~~~g~ 413 (445)
..++++++|.+++|||||+++|+... + +.+. ...++|.+.....+..++.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~ 121 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 121 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence 44799999999999999999997421 1 0001 1235676666666777888
Q ss_pred eEEEEECCCCCcCC
Q psy1007 414 PVILLDTAGLRTTT 427 (445)
Q Consensus 414 ~v~l~DTpG~~~~~ 427 (445)
.+.+|||||+.++.
T Consensus 122 ~~~iiDtPGh~~f~ 135 (467)
T 1r5b_A 122 RFSLLDAPGHKGYV 135 (467)
T ss_dssp EEEECCCCC-----
T ss_pred EEEEEECCCcHHHH
Confidence 89999999998653
No 203
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.54 E-value=4.7e-05 Score=82.89 Aligned_cols=62 Identities=18% Similarity=0.094 Sum_probs=42.1
Q ss_pred CcEEEEEcCCCCChhHHhhhhcccc--ce---e------eec------CCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQ--IS---I------VTS------IPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~--~~---~------vs~------~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
-.+++++|.+|+|||||+|+|+... +. . +.+ ..++|.......+.+++..+.||||||+.++
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 3689999999999999999998521 10 0 111 2355655556677788999999999999854
No 204
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.54 E-value=5.7e-05 Score=77.31 Aligned_cols=61 Identities=26% Similarity=0.386 Sum_probs=32.6
Q ss_pred cEEEEEcCCCCChhHHhhhhccccceeeec------CCCcc-ceEEEEEEEECCe--eEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTS------IPGTT-RDVIEKHLDIGGY--PVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~vs~------~~~tt-~~~~~~~~~~~g~--~v~l~DTpG~~~~ 426 (445)
++++++|++|+|||||+|.|++..+...+. ...++ .+.....+..++. .+.+|||||+...
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence 588999999999999999999876532110 01111 1222222222333 4569999999743
No 205
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.54 E-value=3.6e-05 Score=75.31 Aligned_cols=60 Identities=25% Similarity=0.372 Sum_probs=29.7
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCC------Cccc--eEEEEEEEECC--eeEEEEECCCCC
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP------GTTR--DVIEKHLDIGG--YPVILLDTAGLR 424 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~------~tt~--~~~~~~~~~~g--~~v~l~DTpG~~ 424 (445)
.++++++|++|+|||||+|.|++......+..+ ..|. +.....+..++ ..+.+|||||+.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 87 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhh
Confidence 378999999999999999998875322212111 0111 11122222233 355699999994
No 206
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.51 E-value=4.7e-05 Score=75.74 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=22.5
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.++..++++|+||+|||||+|.+++
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678899999999999999999983
No 207
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.43 E-value=8e-05 Score=74.05 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=22.1
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.++..++++|++|+||||++|.|++
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3567899999999999999999963
No 208
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.37 E-value=9e-05 Score=76.40 Aligned_cols=59 Identities=22% Similarity=0.244 Sum_probs=39.4
Q ss_pred cEEEEEcCCCCChhHHhhhhccc---------------cceeeecCCCccceEEEEEEEEC-----------CeeEEEEE
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQK---------------QISIVTSIPGTTRDVIEKHLDIG-----------GYPVILLD 419 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~---------------~~~~vs~~~~tt~~~~~~~~~~~-----------g~~v~l~D 419 (445)
..|+++|++++|||+|+|.|++. .....+.. ++|+....+.+.+. ...+.++|
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~-~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllD 146 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR-GGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSC-CSSCCCCCEEEEESSCEEEECSSSCEEEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCC-CCCCCceeEEEEecCccccccCCCCcceEEEEc
Confidence 46789999999999999999864 22222222 24444444444442 24677999
Q ss_pred CCCCCc
Q psy1007 420 TAGLRT 425 (445)
Q Consensus 420 TpG~~~ 425 (445)
|||+..
T Consensus 147 TeG~~~ 152 (447)
T 3q5d_A 147 TQGTFD 152 (447)
T ss_dssp EECCCS
T ss_pred CCcccc
Confidence 999974
No 209
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.36 E-value=0.00013 Score=79.35 Aligned_cols=63 Identities=14% Similarity=-0.010 Sum_probs=41.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccc-----eee------ec------CCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQI-----SIV------TS------IPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~-----~~v------s~------~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
+-.+++++|.+|+|||||+|+|+.... ..+ .+ ..+.|.......+.+++..+.+|||||+.++
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 346899999999999999999984211 001 11 2345555556667788899999999999753
No 210
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.33 E-value=0.00019 Score=73.12 Aligned_cols=62 Identities=21% Similarity=0.227 Sum_probs=41.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcccccee--eecCCCccceEEEEEEEE---------------C--C------eeEEEE
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISI--VTSIPGTTRDVIEKHLDI---------------G--G------YPVILL 418 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~--vs~~~~tt~~~~~~~~~~---------------~--g------~~v~l~ 418 (445)
..++++++|.+++|||||+++|++..... .....+.|.+.......+ + + ..+.+|
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 34789999999999999999998643211 122355666544333322 1 1 567799
Q ss_pred ECCCCCc
Q psy1007 419 DTAGLRT 425 (445)
Q Consensus 419 DTpG~~~ 425 (445)
||||..+
T Consensus 89 DtPGh~~ 95 (410)
T 1kk1_A 89 DAPGHEA 95 (410)
T ss_dssp ECSSHHH
T ss_pred ECCChHH
Confidence 9999764
No 211
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.32 E-value=4.1e-05 Score=77.84 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=22.9
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.++++++|.+|+|||||+|+|++.
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCc
Confidence 4589999999999999999999974
No 212
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.28 E-value=0.00013 Score=78.02 Aligned_cols=61 Identities=16% Similarity=0.275 Sum_probs=39.2
Q ss_pred CcEEEEEcCCCCChhHHhhhhccccceeeecCC-CccceEEEEEEEE------------------CCeeEEEEECCCCCc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP-GTTRDVIEKHLDI------------------GGYPVILLDTAGLRT 425 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~~~~~vs~~~-~tt~~~~~~~~~~------------------~g~~v~l~DTpG~~~ 425 (445)
..+|+++|++|+|||||+++|++..+.. ..+ +.|.+.....+.+ ....+.+|||||+.+
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~--~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVAS--REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSC--C----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCcc--ccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 4689999999999999999999765432 222 3333322222221 112478999999986
Q ss_pred CC
Q psy1007 426 TT 427 (445)
Q Consensus 426 ~~ 427 (445)
+.
T Consensus 83 F~ 84 (594)
T 1g7s_A 83 FT 84 (594)
T ss_dssp CT
T ss_pred HH
Confidence 64
No 213
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.26 E-value=0.00054 Score=74.91 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=24.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQI 390 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~ 390 (445)
.-.+|+++|.+++|||||+|+|++..+
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 345899999999999999999999765
No 214
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.20 E-value=0.00032 Score=71.32 Aligned_cols=62 Identities=21% Similarity=0.160 Sum_probs=39.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcccccee--eecCCCccceEEEEEEEE---------------C--C------eeEEEE
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISI--VTSIPGTTRDVIEKHLDI---------------G--G------YPVILL 418 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~~--vs~~~~tt~~~~~~~~~~---------------~--g------~~v~l~ 418 (445)
..++++++|.+++|||||+++|++..... .....+.|.+.......+ + + ..+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 34799999999999999999998653211 122345565543222221 1 1 567799
Q ss_pred ECCCCCc
Q psy1007 419 DTAGLRT 425 (445)
Q Consensus 419 DTpG~~~ 425 (445)
||||..+
T Consensus 87 DtPGh~~ 93 (408)
T 1s0u_A 87 DSPGHET 93 (408)
T ss_dssp ECSSHHH
T ss_pred ECCCHHH
Confidence 9999754
No 215
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.20 E-value=0.00031 Score=76.13 Aligned_cols=64 Identities=28% Similarity=0.226 Sum_probs=45.9
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccccce-----ee------ec------CCCccceEEEEEEEECCeeEEEEECCCCCc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQIS-----IV------TS------IPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~~~-----~v------s~------~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~ 425 (445)
.++.+++++|++|+|||||+++|++.... .+ .+ ..+.|.......+..++..+.+|||||+.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 35678999999999999999999843221 00 00 123455566666777888888999999985
Q ss_pred C
Q psy1007 426 T 426 (445)
Q Consensus 426 ~ 426 (445)
+
T Consensus 87 f 87 (665)
T 2dy1_A 87 F 87 (665)
T ss_dssp G
T ss_pred h
Confidence 4
No 216
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.16 E-value=0.00036 Score=76.10 Aligned_cols=63 Identities=14% Similarity=0.018 Sum_probs=43.4
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcccc--ce---e------eec------CCCccceEEEEEEEECC-------eeEEEEE
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQ--IS---I------VTS------IPGTTRDVIEKHLDIGG-------YPVILLD 419 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~--~~---~------vs~------~~~tt~~~~~~~~~~~g-------~~v~l~D 419 (445)
+-.+++++|.+|+|||||+++|+... +. . +.+ ..+.|.......+.+++ ..+.|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 34689999999999999999997431 10 0 111 22345555555566666 7888999
Q ss_pred CCCCCcC
Q psy1007 420 TAGLRTT 426 (445)
Q Consensus 420 TpG~~~~ 426 (445)
|||..++
T Consensus 89 TPG~~df 95 (704)
T 2rdo_7 89 TPGHVDF 95 (704)
T ss_pred CCCccch
Confidence 9999854
No 217
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.16 E-value=0.00019 Score=79.88 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChhHHhhhhccc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+++++|.+|+|||||+|+|+..
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999875
No 218
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.13 E-value=0.00011 Score=83.15 Aligned_cols=63 Identities=14% Similarity=0.103 Sum_probs=40.6
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccc--e-------------eeecCCCccceEEEEEEEECCeeEEEEECCCCCcC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQI--S-------------IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~--~-------------~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~~~~ 426 (445)
..++++++|.+++|||||+++|++... . ......|+|.+.....+..++..+.+|||||+.++
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 457999999999999999999987410 0 00122355655544445556778889999998743
No 219
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.11 E-value=0.00024 Score=75.95 Aligned_cols=61 Identities=26% Similarity=0.271 Sum_probs=32.5
Q ss_pred cEEEEEcCCCCChhHHhhhhcccccee--------e------ecCCCccceEEEEEEEEC---C--eeEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISI--------V------TSIPGTTRDVIEKHLDIG---G--YPVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~--------v------s~~~~tt~~~~~~~~~~~---g--~~v~l~DTpG~~~~ 426 (445)
.+++++|.+++|||||+++|+...... + ....+.|.......+.+. + ..+.+|||||..++
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF 84 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF 84 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence 479999999999999999998632110 0 011234544444445443 2 56779999999754
No 220
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.09 E-value=5.8e-05 Score=71.72 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=24.0
Q ss_pred cccCcEEEEEcCC---------CCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEP---------NVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~---------~vGKSsLln~l~~~ 388 (445)
....++|+++|++ |||||||+|+|++.
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 3456899999999 99999999999984
No 221
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.08 E-value=9.5e-05 Score=73.88 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.0
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
+...++++|.+|+|||||+++|+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999864
No 222
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.05 E-value=0.00027 Score=68.01 Aligned_cols=25 Identities=36% Similarity=0.671 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCChhHHhhhhccccc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQI 390 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~ 390 (445)
|+++++|++|+|||||+|.|++...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7899999999999999999998643
No 223
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.03 E-value=0.00026 Score=75.68 Aligned_cols=61 Identities=25% Similarity=0.274 Sum_probs=34.7
Q ss_pred cEEEEEcCCCCChhHHhhhhcccccee--------e------ecCCCccceEEEEEEEE---CC--eeEEEEECCCCCcC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQISI--------V------TSIPGTTRDVIEKHLDI---GG--YPVILLDTAGLRTT 426 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~~~~--------v------s~~~~tt~~~~~~~~~~---~g--~~v~l~DTpG~~~~ 426 (445)
.+++++|.+++|||||+++|+...-.. + ....+.|.......+.+ ++ ..+.+|||||..++
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF 86 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF 86 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH
Confidence 489999999999999999998632100 0 01123343333333333 23 46679999999865
No 224
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.02 E-value=0.00066 Score=69.47 Aligned_cols=63 Identities=25% Similarity=0.376 Sum_probs=38.8
Q ss_pred ccCcE--EEEEcCCCCChhHHhhhhcccccee--ee-cCCCccceEEEEEEEECCe--eEEEEECCCCCc
Q psy1007 363 RSGIK--SVIVGEPNVGKSSLMNFLCQKQISI--VT-SIPGTTRDVIEKHLDIGGY--PVILLDTAGLRT 425 (445)
Q Consensus 363 ~~~~~--v~lvG~~~vGKSsLln~l~~~~~~~--vs-~~~~tt~~~~~~~~~~~g~--~v~l~DTpG~~~ 425 (445)
..|.. ++++|++|+|||||+|.|++..+.. +. ..++.++..........+. .+.++||+|+..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhh
Confidence 46666 9999999999999999999875321 11 1233444433323332222 456999999973
No 225
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.87 E-value=0.00045 Score=63.25 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCChhHHhhhhccc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
..+++++|.+|+|||||+|+|+..
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999875
No 226
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.69 E-value=0.00011 Score=67.55 Aligned_cols=60 Identities=23% Similarity=0.326 Sum_probs=39.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccccc-eeeecCCCccceEEEEEEEECCeeEEEEECCCC
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQI-SIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGL 423 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~~-~~vs~~~~tt~~~~~~~~~~~g~~v~l~DTpG~ 423 (445)
..+|..++|+|++|+|||||++.|++... ......+.||+...... ++|....++|++.+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f 76 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEM 76 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHH
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHh
Confidence 34677899999999999999999986532 12234455666654332 45555555555544
No 227
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.68 E-value=0.0014 Score=64.84 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=22.9
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+|..++++|++|+||||+++.|.+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999998863
No 228
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.61 E-value=0.0012 Score=67.34 Aligned_cols=59 Identities=24% Similarity=0.242 Sum_probs=35.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccccce----eeecCCCccceEEEEEEEECC-eeEEEEECCCCC
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQIS----IVTSIPGTTRDVIEKHLDIGG-YPVILLDTAGLR 424 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~~~----~vs~~~~tt~~~~~~~~~~~g-~~v~l~DTpG~~ 424 (445)
.+..++++|++|+|||||+|.+++-... .......+|+.... ..... ..+.++|+||+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v--~q~~~~~~ltv~D~~g~~ 131 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP--YKHPNIPNVVFWDLPGIG 131 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEE--EECSSCTTEEEEECCCGG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEe--ccccccCCeeehHhhccc
Confidence 4468999999999999999999984211 11111122332221 11111 246799999986
No 229
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.47 E-value=0.0025 Score=58.38 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCChhHHhhhhccc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
..+++++|.+|||||||+++|+..
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 478999999999999999999875
No 230
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.32 E-value=0.0066 Score=63.43 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=24.0
Q ss_pred cCcEEEEEcCCCCChhHHhhhhc------cccceeee
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLC------QKQISIVT 394 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~------~~~~~~vs 394 (445)
+...|+++|.+||||||++++|+ +.+...++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 35689999999999999999999 65554443
No 231
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.21 E-value=0.00067 Score=63.87 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=26.8
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhc-----cccceeeecCC
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLC-----QKQISIVTSIP 397 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~-----~~~~~~vs~~~ 397 (445)
+....+++.|.+||||||+++.|. +.+...+...+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~ 51 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT 51 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 345778899999999999999998 66655554333
No 232
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=95.96 E-value=0.0048 Score=65.19 Aligned_cols=63 Identities=21% Similarity=0.213 Sum_probs=42.3
Q ss_pred cEEEEEcCCCCChhHHhhhhcccc-----ce----------eeec------CCCccceEEEEEEEECCeeEEEEECCCCC
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQ-----IS----------IVTS------IPGTTRDVIEKHLDIGGYPVILLDTAGLR 424 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~-----~~----------~vs~------~~~tt~~~~~~~~~~~g~~v~l~DTpG~~ 424 (445)
-+++|+|..++|||||.-+|+-.. .+ .+.+ .-|.|.......+.+++..+.|+||||.-
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence 479999999999999999986210 00 1111 12344445556678899999999999998
Q ss_pred cCCC
Q psy1007 425 TTTS 428 (445)
Q Consensus 425 ~~~~ 428 (445)
+|..
T Consensus 112 DF~~ 115 (548)
T 3vqt_A 112 DFSE 115 (548)
T ss_dssp GCSH
T ss_pred HHHH
Confidence 7753
No 233
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.75 E-value=0.025 Score=57.99 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.0
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
++..++++|.+|+||||+++.|+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 357889999999999999998873
No 234
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.59 E-value=0.004 Score=56.56 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=20.9
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.|..++|+|++|+|||||++.|++.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4567899999999999999999863
No 235
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.55 E-value=0.0052 Score=54.75 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.0
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.|..++++|++|+|||||++.|.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4567899999999999999999864
No 236
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.31 E-value=0.0068 Score=55.17 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=23.0
Q ss_pred cccccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 360 VRIRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 360 ~~~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
..+.+|-.++++|++|+|||||++.+++-
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45667888999999999999999998874
No 237
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.19 E-value=0.007 Score=55.84 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=22.6
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+|-.++|+|++|+|||||++.|++.
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46778999999999999999999874
No 238
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.09 E-value=0.0093 Score=53.00 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|..++++|++|+||||+++.|.+.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 346678999999999999999999874
No 239
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.00 E-value=0.0095 Score=53.51 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+|..++++|++|+|||||++.|++.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 5667899999999999999999864
No 240
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.95 E-value=0.0095 Score=53.32 Aligned_cols=22 Identities=41% Similarity=0.806 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHhhhhccc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+++++|++|+|||||++.+++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 241
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.93 E-value=0.01 Score=55.06 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=23.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
..+|-.++++|++|+|||||++.|++..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 3467889999999999999999998753
No 242
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.91 E-value=0.013 Score=54.96 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=24.3
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3477789999999999999999999753
No 243
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.89 E-value=0.013 Score=53.40 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=22.8
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+|..++++|++|+||||+++.|++..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 56788999999999999999998653
No 244
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.84 E-value=0.013 Score=54.47 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=24.3
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3477789999999999999999999753
No 245
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.80 E-value=0.011 Score=53.48 Aligned_cols=21 Identities=38% Similarity=0.532 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhHHhhhhccc
Q psy1007 368 SVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 368 v~lvG~~~vGKSsLln~l~~~ 388 (445)
++|+||||+||+||++.|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999864
No 246
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.73 E-value=0.012 Score=53.56 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=23.3
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
..+|..++|+|++|+|||||++.|.+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999988763
No 247
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.70 E-value=0.015 Score=51.23 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.0
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.+|-.++++|++|+|||||++.+.+
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHcc
Confidence 4667889999999999999996543
No 248
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.69 E-value=0.015 Score=54.41 Aligned_cols=28 Identities=36% Similarity=0.496 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3477889999999999999999999754
No 249
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.62 E-value=0.012 Score=52.58 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHhhhhccc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.++++|++|+|||||++.|++.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999999854
No 250
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.60 E-value=0.016 Score=55.11 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=24.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3477789999999999999999999753
No 251
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.60 E-value=0.0062 Score=62.42 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCChhHHhhhhcc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
...++++|++|+||||+++.|..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999886
No 252
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.58 E-value=0.017 Score=54.87 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=24.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3477789999999999999999999753
No 253
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.57 E-value=0.017 Score=54.55 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=24.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3477889999999999999999999853
No 254
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.55 E-value=0.017 Score=55.57 Aligned_cols=28 Identities=32% Similarity=0.442 Sum_probs=24.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3477889999999999999999999743
No 255
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.54 E-value=0.017 Score=53.76 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=24.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3477889999999999999999999753
No 256
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.53 E-value=0.017 Score=54.29 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=24.0
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++-
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 347778999999999999999999985
No 257
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.52 E-value=0.016 Score=53.61 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=24.2
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467789999999999999999999753
No 258
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.48 E-value=0.018 Score=55.05 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=24.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3477889999999999999999999853
No 259
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.45 E-value=0.016 Score=51.95 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=23.1
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
.+|..++++|++|+||||+++.|.+..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 357789999999999999999987643
No 260
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.44 E-value=0.019 Score=53.89 Aligned_cols=28 Identities=14% Similarity=0.326 Sum_probs=24.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3477789999999999999999999853
No 261
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.42 E-value=0.019 Score=54.78 Aligned_cols=28 Identities=32% Similarity=0.520 Sum_probs=24.3
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3477789999999999999999999753
No 262
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.40 E-value=0.02 Score=54.51 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=24.0
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++-
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 347788999999999999999999874
No 263
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.39 E-value=0.017 Score=50.68 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=23.5
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
.+|-.++++|++|+|||||++.+++..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 466788999999999999999998754
No 264
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.36 E-value=0.02 Score=54.17 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=24.3
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3467789999999999999999999753
No 265
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.34 E-value=0.16 Score=49.26 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.3
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
..+|-.++++|++|+||||+++.+++.
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 346778999999999999999999873
No 266
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.34 E-value=0.02 Score=54.31 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=24.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3477789999999999999999999853
No 267
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.33 E-value=0.02 Score=54.73 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=24.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3477789999999999999999999853
No 268
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.30 E-value=0.02 Score=55.03 Aligned_cols=28 Identities=32% Similarity=0.482 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3477889999999999999999999853
No 269
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.27 E-value=0.02 Score=54.04 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=24.1
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++-
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 347778999999999999999999984
No 270
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.22 E-value=0.021 Score=54.53 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=24.1
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++-
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 347778999999999999999999985
No 271
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.18 E-value=0.017 Score=53.39 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=18.7
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhc-cc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLC-QK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~-~~ 388 (445)
+.+|..++|+|++|+||||+++.|+ +.
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC--
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3577889999999999999999998 54
No 272
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.15 E-value=0.045 Score=54.60 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=24.3
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3467789999999999999999999854
No 273
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.13 E-value=0.024 Score=54.04 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=24.3
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3477789999999999999999999753
No 274
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=94.12 E-value=0.036 Score=59.20 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHhhhhcccc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
.++++|++|+|||||++.++|-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 38999999999999999999864
No 275
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.11 E-value=0.023 Score=53.75 Aligned_cols=28 Identities=25% Similarity=0.474 Sum_probs=24.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3477789999999999999999999854
No 276
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.05 E-value=0.22 Score=51.64 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=23.3
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+..|..++|+|++|+|||||++.|.+.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHH
Confidence 346778999999999999999998863
No 277
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.03 E-value=0.021 Score=51.73 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.2
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+|..++++|++|+|||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998874
No 278
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.89 E-value=0.023 Score=55.40 Aligned_cols=27 Identities=37% Similarity=0.391 Sum_probs=23.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++|+|++|+|||||++.|++-
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 457788999999999999999998853
No 279
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.86 E-value=0.024 Score=51.34 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.6
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
-.|..++++|+||+||||+.+.|...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 36778999999999999999998754
No 280
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.86 E-value=0.02 Score=55.89 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=24.1
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++-
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcC
Confidence 357889999999999999999999874
No 281
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=93.84 E-value=0.056 Score=55.52 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=18.0
Q ss_pred cEEEEEcCCCCChhHHhhhhc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLC 386 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~ 386 (445)
..|.++|+.++|||+|+|.|+
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchhHHHHHHH
Confidence 356799999999999999664
No 282
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.80 E-value=0.023 Score=52.21 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=23.3
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+|-.++++|++|+|||||++.+++-
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46678899999999999999999986
No 283
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.75 E-value=0.026 Score=53.67 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=23.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHh
Confidence 456778999999999999999998863
No 284
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.73 E-value=0.24 Score=49.30 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=23.0
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+|-.++++|++|+||||+++.|++.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 46778999999999999999998873
No 285
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.73 E-value=0.03 Score=54.14 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=24.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3477789999999999999999999754
No 286
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.59 E-value=0.029 Score=50.53 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=21.6
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
+|..++++|++|+||||+++.|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999875
No 287
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.58 E-value=0.028 Score=51.13 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=23.9
Q ss_pred ccccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 361 RIRSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 361 ~~~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.+.+|-.++++|++|+|||||++.+++
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 456777899999999999999999976
No 288
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.54 E-value=0.03 Score=52.59 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChhHHhhhhcccc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
-.++++|++|+|||||++.+++-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999999753
No 289
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.45 E-value=0.066 Score=47.10 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=21.8
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+|..++++|++|+|||||++.+++.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4677899999999999999988764
No 290
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.41 E-value=0.035 Score=51.16 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=23.1
Q ss_pred ccccCcEEEEEcCCCCChhHHhhhhc
Q psy1007 361 RIRSGIKSVIVGEPNVGKSSLMNFLC 386 (445)
Q Consensus 361 ~~~~~~~v~lvG~~~vGKSsLln~l~ 386 (445)
.+.+|-.++++|++|+|||||++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 45677889999999999999999887
No 291
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.38 E-value=0.029 Score=48.84 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCChhHHhhhhccc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+..++++|++|+||||+.+.|.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998763
No 292
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=93.30 E-value=0.013 Score=63.04 Aligned_cols=61 Identities=20% Similarity=0.189 Sum_probs=42.6
Q ss_pred EEEEEcCCCCChhHHhhhhcccc-----ceee------ecCC------CccceEEEEEEEECCeeEEEEECCCCCcCC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQ-----ISIV------TSIP------GTTRDVIEKHLDIGGYPVILLDTAGLRTTT 427 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~-----~~~v------s~~~------~tt~~~~~~~~~~~g~~v~l~DTpG~~~~~ 427 (445)
+++++|..++|||||.-+|+... ...+ .+.. |.|.......+.+++..+.|+||||..+|.
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 68999999999999999886321 1111 1111 345445555667888888999999998664
No 293
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.29 E-value=0.04 Score=52.48 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=23.7
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+. |-.++++|++|+|||||++.+++-.
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 7789999999999999999999754
No 294
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.25 E-value=0.034 Score=54.39 Aligned_cols=27 Identities=22% Similarity=0.131 Sum_probs=23.7
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
..+|..++|+|++|+|||||++.|.+-
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 457889999999999999999998863
No 295
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.22 E-value=0.031 Score=49.68 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChhHHhhhhcc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~ 387 (445)
..++++|++|+||||+++.|.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3578999999999999999975
No 296
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.20 E-value=0.039 Score=55.17 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=24.0
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
.+|-.++++|++|+|||||++.+.+-.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 477889999999999999999998753
No 297
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.19 E-value=0.032 Score=50.40 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChhHHhhhhccc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
-.++++|++|+|||||++.+++.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 36899999999999999998864
No 298
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.13 E-value=0.037 Score=51.62 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=23.0
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+|..++++|++|+||||+++.|.+.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46788999999999999999998763
No 299
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.12 E-value=0.037 Score=49.82 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=22.6
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+|..++++|++|+||||+.+.|.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999998764
No 300
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.09 E-value=0.039 Score=48.27 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=21.0
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
+|..++++|++|+||||+.+.|.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456789999999999999998865
No 301
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.08 E-value=0.042 Score=54.77 Aligned_cols=27 Identities=19% Similarity=0.448 Sum_probs=23.8
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
.+|-.++++|++|+|||||++.+++-.
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 467789999999999999999999753
No 302
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.06 E-value=0.057 Score=53.72 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=24.2
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.++|-.
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3467789999999999999999999853
No 303
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.01 E-value=0.044 Score=54.70 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=24.1
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3467789999999999999999999853
No 304
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.99 E-value=0.044 Score=55.13 Aligned_cols=28 Identities=32% Similarity=0.515 Sum_probs=24.2
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3467789999999999999999999854
No 305
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.90 E-value=0.046 Score=54.60 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=24.2
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3467789999999999999999999853
No 306
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.78 E-value=0.049 Score=54.62 Aligned_cols=28 Identities=21% Similarity=0.462 Sum_probs=24.2
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 3467789999999999999999998753
No 307
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.78 E-value=0.049 Score=54.64 Aligned_cols=28 Identities=14% Similarity=0.456 Sum_probs=24.1
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+..|-.++++|++|+|||||++.+++-.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3467789999999999999999999753
No 308
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.78 E-value=0.051 Score=50.63 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=20.9
Q ss_pred cCcEEEEEcCCCCChhHHhhhhc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLC 386 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~ 386 (445)
++..++++|++|+||||+++.|+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999998
No 309
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.71 E-value=0.039 Score=54.97 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=23.2
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
..|-.++++|++|+|||||+|.+++.
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 46778999999999999999999874
No 310
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.48 E-value=0.053 Score=48.73 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=21.5
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.++..++++|++|+||||+.+.|..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3567899999999999999998875
No 311
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.44 E-value=0.041 Score=54.64 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=24.2
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.++|-.
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 3467789999999999999999999753
No 312
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.43 E-value=0.056 Score=54.52 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=23.9
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++-
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 347788999999999999999999874
No 313
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.37 E-value=0.047 Score=53.74 Aligned_cols=26 Identities=15% Similarity=0.347 Sum_probs=23.0
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
..|-.++++|++|+|||||++.+++-
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999874
No 314
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.29 E-value=0.063 Score=48.37 Aligned_cols=28 Identities=29% Similarity=0.251 Sum_probs=24.1
Q ss_pred ccccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 361 RIRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 361 ~~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+..+..++++|++|+||||+.+.|.+.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4456788999999999999999999874
No 315
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.26 E-value=0.069 Score=49.31 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=23.4
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+|..++|.|++|+||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 46788999999999999999999874
No 316
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.26 E-value=0.086 Score=51.55 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=22.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.|.-+++.|+||+||||+.+.|..+
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 4778999999999999999998864
No 317
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.14 E-value=0.061 Score=52.35 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.6
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
+|-.++++|++|+||||+++.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 467899999999999999999885
No 318
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.13 E-value=0.061 Score=46.44 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+-.++++|++|+|||+|++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 5667899999999999999999864
No 319
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.04 E-value=0.19 Score=48.23 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.+..+++.|+||+||||+.+.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467889999999999999999864
No 320
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.02 E-value=0.073 Score=46.78 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCChhHHhhhhcc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
+..+++.|.+|+||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999998865
No 321
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.96 E-value=0.079 Score=46.24 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCChhHHhhhhcc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
+..+++.|.||+||||+.+.|..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999875
No 322
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.93 E-value=0.066 Score=48.74 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChhHHhhhhccc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+..++++|++|+||||+.+.|.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999988763
No 323
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=91.88 E-value=0.13 Score=55.78 Aligned_cols=61 Identities=20% Similarity=0.125 Sum_probs=36.8
Q ss_pred EEEEEcCCCCChhHHhhhhcccc-----ceeee------c------CCCccceEEEEEEEEC-------CeeEEEEECCC
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQKQ-----ISIVT------S------IPGTTRDVIEKHLDIG-------GYPVILLDTAG 422 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~~-----~~~vs------~------~~~tt~~~~~~~~~~~-------g~~v~l~DTpG 422 (445)
+++++|....|||||.-+|+... ...+. + .-|.|......++.+. +..+.|+||||
T Consensus 15 Ni~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPG 94 (709)
T 4fn5_A 15 NIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPG 94 (709)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCCS
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCC
Confidence 79999999999999999887421 11111 1 1123333333445443 46788999999
Q ss_pred CCcCC
Q psy1007 423 LRTTT 427 (445)
Q Consensus 423 ~~~~~ 427 (445)
.-+|.
T Consensus 95 HvDF~ 99 (709)
T 4fn5_A 95 HVDFT 99 (709)
T ss_dssp CTTCH
T ss_pred CcccH
Confidence 98664
No 324
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.75 E-value=0.078 Score=45.77 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHhhhhccc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+++.|++|+||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998754
No 325
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.66 E-value=0.077 Score=48.03 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=23.2
Q ss_pred ccccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 361 RIRSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 361 ~~~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.+.+|-.++++|++|+|||||++.+++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 355677889999999999999999884
No 326
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.65 E-value=0.07 Score=46.93 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=21.0
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.|..+++.|.+|+||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998874
No 327
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.64 E-value=0.061 Score=53.42 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCChhHHhhhhccc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+-+++++|++|+|||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999875
No 328
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.60 E-value=0.069 Score=51.81 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=22.3
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
..|..++|+|++|+|||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4667899999999999999998876
No 329
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.57 E-value=0.086 Score=45.26 Aligned_cols=19 Identities=37% Similarity=0.601 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChhHHhhhh
Q psy1007 367 KSVIVGEPNVGKSSLMNFL 385 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l 385 (445)
.+++.|++|+||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999998
No 330
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.57 E-value=0.089 Score=46.40 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=20.8
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.+..+++.|.+|+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999998864
No 331
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.50 E-value=0.075 Score=53.18 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=22.7
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+|-.++++|++|+||||+++.+++.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45678999999999999999999863
No 332
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.46 E-value=0.09 Score=49.37 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.8
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLC 386 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~ 386 (445)
.++..++|+|++|+||||+.+.|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999998
No 333
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.28 E-value=0.1 Score=46.46 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=22.0
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+|..+++.|.+|+||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999988754
No 334
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.27 E-value=0.043 Score=48.77 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHhhhhccc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.++++|++|+|||||++.|++-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998864
No 335
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.18 E-value=0.078 Score=47.25 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChhHHhhhhccc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
..++++|++|+|||||++.+++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 36789999999999999999864
No 336
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=91.16 E-value=0.095 Score=55.68 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=23.8
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+|-.++++|++|+|||||++.+++-
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 47889999999999999999999875
No 337
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.16 E-value=0.085 Score=52.33 Aligned_cols=28 Identities=29% Similarity=0.506 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-+++++|++|+|||||++.+++..
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478899999999999999999998753
No 338
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=91.16 E-value=0.095 Score=55.51 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=23.8
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+|-.++++|++|+|||||++.+++-
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 47889999999999999999999874
No 339
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.13 E-value=0.081 Score=47.45 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCChhHHhhhhccc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
...++++|.+|+||||+.+.|...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988653
No 340
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.13 E-value=0.087 Score=47.47 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=21.8
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.++..++++|++|+||||+++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998864
No 341
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.12 E-value=0.096 Score=45.52 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChhHHhhhhcc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~ 387 (445)
..+++.|.||+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3578999999999999999876
No 342
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.09 E-value=0.082 Score=55.25 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=22.8
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
..|..++++|++|+||||++|.+++-
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 36677999999999999999999864
No 343
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.05 E-value=0.099 Score=55.35 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=23.7
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+|-.++++|++|+|||||++.+++-
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcC
Confidence 47889999999999999999999874
No 344
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.02 E-value=0.099 Score=54.95 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=24.9
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.++|-.
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678889999999999999999999854
No 345
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.00 E-value=0.088 Score=47.15 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChhHHhhhhcc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.+++++|.+|+||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999998875
No 346
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.96 E-value=0.11 Score=46.50 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=21.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
++..+++.|.+|+||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999999875
No 347
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.90 E-value=0.1 Score=49.94 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=23.7
Q ss_pred ccccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 361 RIRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 361 ~~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+..|-.++++|+||+|||||++.+++.
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3557778999999999999999988763
No 348
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.89 E-value=0.1 Score=46.91 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChhHHhhhhcc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~ 387 (445)
+.++++|++|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 349
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.88 E-value=0.093 Score=52.24 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=21.4
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
++-.++++|++|+|||||++.+++.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3447899999999999999998763
No 350
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.78 E-value=0.11 Score=55.19 Aligned_cols=26 Identities=31% Similarity=0.593 Sum_probs=23.6
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+|-.++++|++|+|||||++.+++-
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 47889999999999999999999874
No 351
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.76 E-value=0.1 Score=55.20 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=23.7
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+|-.++++|++|+|||||++.+++-
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 47889999999999999999999874
No 352
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.75 E-value=0.13 Score=45.67 Aligned_cols=25 Identities=32% Similarity=0.699 Sum_probs=21.9
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
++..++++|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999988754
No 353
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.68 E-value=0.11 Score=45.70 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
+|..+++.|.+|+||||+.+.|.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467789999999999999999875
No 354
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.62 E-value=0.12 Score=46.54 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=23.4
Q ss_pred ccccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 361 RIRSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 361 ~~~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.+..|-.++++|+||+|||||++.++.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 456777899999999999999998875
No 355
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.55 E-value=0.12 Score=46.99 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=21.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.+..++++|.+|+||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998865
No 356
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.55 E-value=0.12 Score=54.81 Aligned_cols=26 Identities=35% Similarity=0.593 Sum_probs=23.7
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+|-.++++|++|+|||||++.+++-
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47889999999999999999999874
No 357
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.51 E-value=0.13 Score=46.04 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.6
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
++..+++.|.+|+||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999999998875
No 358
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.47 E-value=0.11 Score=46.18 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHhhhhcc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~ 387 (445)
.+++.|.+|+||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998876
No 359
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.45 E-value=0.13 Score=46.11 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.0
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.++..+++.|.+|+||||+.+.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999875
No 360
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.44 E-value=0.098 Score=53.92 Aligned_cols=26 Identities=42% Similarity=0.618 Sum_probs=23.1
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
..|-.++++|++|+|||||++.|++-
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 36778999999999999999999875
No 361
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.40 E-value=0.13 Score=45.13 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=19.5
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
+| ..+|+|++|+|||||+.++..
T Consensus 26 ~g-~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 26 KG-FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SS-EEEEEECTTSSHHHHHHHHHH
T ss_pred CC-cEEEECCCCCCHHHHHHHHHH
Confidence 55 578999999999999998754
No 362
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.37 E-value=0.12 Score=54.22 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=23.8
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
.+|-.++++|++|+|||||++.+++-.
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 366788999999999999999999854
No 363
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.34 E-value=0.13 Score=45.16 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCChhHHhhhhcc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
+..++++|++|+||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998864
No 364
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.33 E-value=0.11 Score=53.06 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=24.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-+++++|++|+|||||++.+++..
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4577899999999999999999998753
No 365
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=90.32 E-value=0.12 Score=45.69 Aligned_cols=26 Identities=27% Similarity=0.449 Sum_probs=22.2
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.++..++++|.+|+||||+.+.|...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999988653
No 366
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.29 E-value=0.12 Score=47.23 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.6
Q ss_pred ccccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 361 RIRSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 361 ~~~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.+..|-.++++|++|+|||||+..+++
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 456778899999999999999998876
No 367
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.24 E-value=0.12 Score=45.37 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhHHhhhhcc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~ 387 (445)
.+++.|.+|+||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998865
No 368
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.18 E-value=0.13 Score=54.90 Aligned_cols=28 Identities=36% Similarity=0.497 Sum_probs=24.6
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.+++-.
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3468899999999999999999999854
No 369
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.17 E-value=0.24 Score=46.37 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=21.6
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
..+..++++|+||+||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998764
No 370
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.04 E-value=0.14 Score=45.14 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
++..+++.|.+|+||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999998864
No 371
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.03 E-value=0.14 Score=54.56 Aligned_cols=28 Identities=25% Similarity=0.487 Sum_probs=24.9
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
+.+|-.++++|++|+|||||++.++|-.
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 4678889999999999999999999854
No 372
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=89.91 E-value=0.11 Score=48.25 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=19.3
Q ss_pred EEEEcCCCCChhHHhhhhccc
Q psy1007 368 SVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 368 v~lvG~~~vGKSsLln~l~~~ 388 (445)
++++|+||+|||||++.+++.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998864
No 373
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.86 E-value=0.14 Score=44.95 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCCChhHHhhhhcc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
+..+++.|.+|+||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999988764
No 374
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.86 E-value=0.13 Score=49.63 Aligned_cols=24 Identities=17% Similarity=0.081 Sum_probs=21.2
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.+..++++|++|+|||||.+.|.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999988765
No 375
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.86 E-value=0.11 Score=49.41 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=19.5
Q ss_pred EEEEcCCCCChhHHhhhhccc
Q psy1007 368 SVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 368 v~lvG~~~vGKSsLln~l~~~ 388 (445)
++++|+||+|||||++.+++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999999864
No 376
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.76 E-value=0.15 Score=45.97 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhHHhhhhcc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~ 387 (445)
++++.|++|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 377
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=89.65 E-value=0.14 Score=50.31 Aligned_cols=24 Identities=29% Similarity=0.195 Sum_probs=20.8
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
..+.++++|++|+||||+++.|.+
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988754
No 378
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.58 E-value=0.17 Score=45.17 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=21.2
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.+..+++.|.+|+||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998865
No 379
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.52 E-value=0.16 Score=46.57 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=20.5
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
++..+++.|.+|+||||+.+.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
No 380
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=89.50 E-value=0.16 Score=44.46 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=20.9
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
++..+++.|.+|+||||+.+.|..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 456789999999999999999874
No 381
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.47 E-value=0.14 Score=52.01 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=21.6
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
++-.++++|++|+||||+++.+++.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 4456899999999999999999864
No 382
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.46 E-value=0.17 Score=45.79 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhHHhhhhcc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~ 387 (445)
+++|.|+||+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 383
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.43 E-value=0.17 Score=53.21 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=24.0
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
.+|-.++++|++|+|||||++.+++-.
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999999854
No 384
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.16 E-value=0.19 Score=43.43 Aligned_cols=24 Identities=38% Similarity=0.703 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCChhHHhhhhccc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+..+++.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988754
No 385
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.11 E-value=0.16 Score=46.21 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=20.7
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.+..++|+|++|+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998865
No 386
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.06 E-value=0.17 Score=46.87 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=22.7
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
..|..+++.|.+|+||||+++.|...
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 46788999999999999999988754
No 387
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=88.96 E-value=0.17 Score=44.24 Aligned_cols=24 Identities=25% Similarity=0.162 Sum_probs=16.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
++..+++.|.+|+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998864
No 388
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=88.89 E-value=0.16 Score=47.93 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChhHHhhhhcc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
|..++++|++|+||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999998865
No 389
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=88.86 E-value=0.18 Score=45.58 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.9
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
..|..+++.|.+|+||||+.+.|..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4677899999999999999998865
No 390
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=88.84 E-value=0.19 Score=46.86 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.5
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.++.+++.|+||+||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999998875
No 391
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.74 E-value=0.15 Score=49.63 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHhhhhccc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.++++|++|+|||||+|.+++.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4688999999999999999964
No 392
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=88.69 E-value=0.66 Score=46.05 Aligned_cols=22 Identities=45% Similarity=0.696 Sum_probs=19.0
Q ss_pred cCcEEEEEcCCCCChhHHhhhhc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLC 386 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~ 386 (445)
.|+ .+++|++|+|||||+++++
T Consensus 23 ~g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SGI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SEE-EEEECCTTSSHHHHHHHHH
T ss_pred CCe-EEEECCCCCCHHHHHHHHH
Confidence 554 5689999999999999986
No 393
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.66 E-value=0.19 Score=52.72 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=24.0
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
..|-.++++|++|+|||||++.+++-.
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357789999999999999999999864
No 394
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=88.60 E-value=0.2 Score=44.25 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.4
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+..+++.|.+|+||||+.+.|...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988753
No 395
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=88.54 E-value=0.16 Score=48.03 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=19.3
Q ss_pred EEEEcCCCCChhHHhhhhccc
Q psy1007 368 SVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 368 v~lvG~~~vGKSsLln~l~~~ 388 (445)
++++|+||+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999998864
No 396
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.52 E-value=0.21 Score=45.49 Aligned_cols=24 Identities=21% Similarity=0.511 Sum_probs=20.9
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
++..+++.|.+|+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998865
No 397
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=88.51 E-value=0.22 Score=46.76 Aligned_cols=27 Identities=33% Similarity=0.241 Sum_probs=22.5
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
..++..|++.|.+|+||||+.+.|...
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 346788999999999999999998764
No 398
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.50 E-value=0.16 Score=49.62 Aligned_cols=22 Identities=23% Similarity=0.655 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHhhhhccc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.++++|+||+|||||++.+++.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999875
No 399
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=88.25 E-value=0.23 Score=44.93 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCChhHHhhhhcc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
++.++|.|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999998864
No 400
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=88.17 E-value=0.2 Score=58.33 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=23.2
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.+|-+++++|++|+|||||++.|++
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhc
Confidence 4788999999999999999999986
No 401
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.10 E-value=0.22 Score=53.12 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=23.8
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
..|-.++++|++|+|||||++.+++-.
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 357789999999999999999999854
No 402
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=88.07 E-value=0.2 Score=43.74 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhHHhhhhcc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~ 387 (445)
+++++|++|+||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999998865
No 403
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=87.88 E-value=0.2 Score=51.96 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCChhHHhhhhcc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~ 387 (445)
-.++|+|++|+|||||++.+++
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 5679999999999999999987
No 404
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.84 E-value=0.35 Score=44.21 Aligned_cols=25 Identities=36% Similarity=0.500 Sum_probs=22.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+..++++|+||+|||+|...|...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 5677899999999999999998765
No 405
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=87.81 E-value=0.23 Score=44.93 Aligned_cols=21 Identities=24% Similarity=0.657 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhHHhhhhcc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~ 387 (445)
++++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 406
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.77 E-value=0.23 Score=49.73 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=22.8
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+..+-.++++|++|+|||||++.+.+.
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 345668899999999999999998863
No 407
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=87.71 E-value=0.26 Score=43.45 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHhhhhccc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+++.|.+|+||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998754
No 408
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=87.64 E-value=3.4 Score=42.02 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.5
Q ss_pred cCcEEEEEcCCCCChhHHhhhhc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLC 386 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~ 386 (445)
++..++++|++|+||||+++.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45688999999999999999887
No 409
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=87.61 E-value=0.27 Score=42.28 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhHHhhhhcc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~ 387 (445)
++++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 410
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=87.55 E-value=0.12 Score=46.40 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHhhhhccc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+++.|.+|+||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999998753
No 411
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.52 E-value=0.24 Score=46.94 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=23.6
Q ss_pred ccccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 361 RIRSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 361 ~~~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.+..|-.++++|++|+|||||+..+++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456777899999999999999998875
No 412
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=87.50 E-value=0.26 Score=43.91 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.5
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
+...+++.|.+|+||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999988864
No 413
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.36 E-value=0.25 Score=47.77 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.2
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
++..++++|++|+||||+++.|.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999998864
No 414
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=87.33 E-value=0.26 Score=43.66 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=21.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+...++|.|.+|+||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3467999999999999999988754
No 415
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=87.31 E-value=0.28 Score=46.13 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCChhHHhhhhcc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
+..+++.|.||+||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999998875
No 416
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=87.30 E-value=0.28 Score=42.98 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhHHhhhhcc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~ 387 (445)
.+++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998875
No 417
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=87.25 E-value=0.29 Score=44.27 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCChhHHhhhhccc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+..+++.|++|+|||++++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988753
No 418
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=87.09 E-value=0.18 Score=53.08 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=23.8
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|..++|+|.+|+|||||.+.|.+.
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHh
Confidence 457889999999999999999998764
No 419
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.01 E-value=0.28 Score=45.18 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=22.6
Q ss_pred cccccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 360 VRIRSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 360 ~~~~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
+.+.++..++++|.+|+||||+.+.|.+
T Consensus 11 ~~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 11 DDKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp ---CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3455778999999999999999998875
No 420
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=86.99 E-value=0.29 Score=42.77 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChhHHhhhhcc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~ 387 (445)
..+++.|.+|+||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 421
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=86.95 E-value=0.23 Score=46.57 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHhhhhccc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.++++|++|+||||+.+.|...
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 4789999999999999988753
No 422
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=86.94 E-value=0.3 Score=44.99 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=22.6
Q ss_pred cccccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 360 VRIRSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 360 ~~~~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
..+++...++++|+||+||+|....|+.
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4455666778899999999999888875
No 423
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=86.90 E-value=0.3 Score=44.85 Aligned_cols=24 Identities=29% Similarity=0.653 Sum_probs=21.2
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.+..++|.|.+|+||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998865
No 424
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.77 E-value=0.28 Score=42.20 Aligned_cols=20 Identities=35% Similarity=0.612 Sum_probs=17.3
Q ss_pred EEEEEcCCCCChhHHhhhhc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLC 386 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~ 386 (445)
..+++|++|+||||++.++.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35788999999999999865
No 425
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=86.70 E-value=0.25 Score=42.66 Aligned_cols=24 Identities=29% Similarity=0.612 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCChhHHhhhhccc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
...+++.|++|+|||+++..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999988754
No 426
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=86.67 E-value=0.28 Score=52.82 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.1
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLC 386 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~ 386 (445)
..|-.++++|++|+|||||+|.++
T Consensus 346 ~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 346 PLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cCCCEEEEEeeCCCCHHHHHHHHH
Confidence 367889999999999999998764
No 427
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=86.54 E-value=0.3 Score=44.62 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhHHhhhhcc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~ 387 (445)
.+++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998864
No 428
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=86.51 E-value=0.32 Score=44.37 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=22.0
Q ss_pred ccccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 361 RIRSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 361 ~~~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.+..|-.++++|+||+|||||...++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 455677889999999999999776653
No 429
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=86.40 E-value=0.3 Score=43.25 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChhHHhhhhccc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
..++++|.+|+||||+++.|+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999999998763
No 430
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=86.34 E-value=0.31 Score=42.72 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCChhHHhhhhcc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~ 387 (445)
..+++.|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999988865
No 431
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=86.28 E-value=0.31 Score=42.00 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCChhHHhhhhcc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~ 387 (445)
..+++.|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998865
No 432
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=86.22 E-value=0.27 Score=45.76 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCChhHHhhhhccc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
..+++.|+||+|||++.+.+.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45899999999999999998754
No 433
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=86.18 E-value=0.35 Score=45.04 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=20.5
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
+.+.|+|.|.+|+||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999887754
No 434
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=86.15 E-value=0.15 Score=51.10 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=20.7
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLC 386 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~ 386 (445)
+.+| .++|+|++|+|||||++.+.
T Consensus 58 ~~~G-~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 58 LGGG-FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp CCSS-EEEEEESHHHHHHHHTHHHH
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHH
Confidence 3577 88999999999999998773
No 435
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=86.10 E-value=0.36 Score=45.00 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.8
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.++.+++.|++|+||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998874
No 436
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=86.04 E-value=0.34 Score=44.16 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhHHhhhhcc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~ 387 (445)
.++++|+||+||+|....|+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999988875
No 437
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=85.92 E-value=0.33 Score=56.44 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=23.8
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+|-.++++|++|+|||||++.+++-
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccc
Confidence 47889999999999999999999874
No 438
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=85.72 E-value=0.38 Score=42.79 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChhHHhhhhccc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
..+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999988753
No 439
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=85.72 E-value=0.34 Score=54.41 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=24.0
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
.+|-.++++|++|+|||||++.++++.
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478889999999999999999999643
No 440
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=85.58 E-value=0.37 Score=55.91 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=23.7
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+|-.++++|++|+|||||++.+++-
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47889999999999999999999874
No 441
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=85.48 E-value=0.37 Score=51.37 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCChhHHhhhhcccc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
-.++++|++|+|||||++.+++-.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 458999999999999999999854
No 442
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=85.08 E-value=0.26 Score=55.35 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=23.6
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
..|-.++++|++|+|||||++.|+|-
T Consensus 697 ~~GeivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 697 SLSSRIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp ETTCEEEECSCCCHHHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36779999999999999999999985
No 443
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=84.83 E-value=0.38 Score=46.69 Aligned_cols=25 Identities=20% Similarity=0.293 Sum_probs=21.5
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
..+..++++|++|+||||++..|.+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHH
Confidence 3566789999999999999998875
No 444
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=84.69 E-value=0.43 Score=44.90 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=21.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+..+++.|+||+|||++++.+...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4456899999999999999998754
No 445
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=84.65 E-value=0.39 Score=47.43 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=23.8
Q ss_pred ccccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 361 RIRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 361 ~~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+..|-.+.++|++|+|||||++.+++.
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4557778999999999999999988753
No 446
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=84.51 E-value=0.47 Score=40.89 Aligned_cols=22 Identities=36% Similarity=0.309 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChhHHhhhhcc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~ 387 (445)
..+++.|.+|+||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998865
No 447
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=84.47 E-value=0.47 Score=40.15 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=21.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+..+.+.|+||+|||++...+...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHh
Confidence 4467899999999999999988653
No 448
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=84.32 E-value=0.42 Score=42.25 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhHHhhhhcc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~ 387 (445)
.+++.|++|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998875
No 449
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=84.29 E-value=0.45 Score=45.64 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=21.9
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
..+..+++.|+||+|||++.+.+...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 34567899999999999999998764
No 450
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=84.22 E-value=0.42 Score=42.73 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHhhhhccc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+++.|++|+|||+++..+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999988753
No 451
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=84.09 E-value=0.44 Score=45.14 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.4
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+..+++.|+||+|||++.+.+...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3467899999999999999998764
No 452
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=83.86 E-value=0.52 Score=46.47 Aligned_cols=26 Identities=27% Similarity=0.224 Sum_probs=21.9
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQKQ 389 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~~ 389 (445)
++..++|+|++|+|||+|...|...-
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34578999999999999999998753
No 453
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=83.73 E-value=0.66 Score=41.44 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=21.5
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.|.-+++.|+||+||||+.-.|..+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 5677899999999999999887654
No 454
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=83.60 E-value=0.51 Score=39.91 Aligned_cols=24 Identities=8% Similarity=0.205 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCChhHHhhhhccc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+..+.+.|+||+|||++...+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 456899999999999999998764
No 455
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=83.60 E-value=0.46 Score=48.96 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=22.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+|.+++++|++|+|||||+|.+...
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhh
Confidence 6778999999999999999988754
No 456
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=83.23 E-value=0.55 Score=44.65 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=20.1
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.+..++|.|+||+|||++.+.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999986654
No 457
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=83.07 E-value=0.55 Score=43.32 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=21.0
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
....+++.|+||+|||++.+.+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999988753
No 458
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=82.84 E-value=0.57 Score=44.63 Aligned_cols=23 Identities=26% Similarity=0.128 Sum_probs=20.4
Q ss_pred cCcEEEEEcCCCCChhHHhhhhc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLC 386 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~ 386 (445)
..+.|+|.|.+|+||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999886
No 459
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=82.72 E-value=0.47 Score=46.15 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCChhHHhhhhccc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+-.+++.|++|+|||||++.+.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998863
No 460
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.60 E-value=0.47 Score=46.06 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=18.7
Q ss_pred EEEEcCCCCChhHHhhhhcc
Q psy1007 368 SVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 368 v~lvG~~~vGKSsLln~l~~ 387 (445)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998876
No 461
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=82.56 E-value=0.54 Score=42.50 Aligned_cols=20 Identities=35% Similarity=0.612 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhHHhhhhc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLC 386 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~ 386 (445)
..+|+|++|+||||++.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 45788999999999999874
No 462
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=82.54 E-value=0.54 Score=43.61 Aligned_cols=26 Identities=19% Similarity=0.469 Sum_probs=19.8
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+|.-+++.|.+|+||||+.+.|...
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46888999999999999999998753
No 463
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=82.43 E-value=0.53 Score=49.00 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=21.6
Q ss_pred ccccCcEEEEEcCCCCChhHHhhhh
Q psy1007 361 RIRSGIKSVIVGEPNVGKSSLMNFL 385 (445)
Q Consensus 361 ~~~~~~~v~lvG~~~vGKSsLln~l 385 (445)
.+.+|-.++++|++|+|||||++.|
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 3457778999999999999999995
No 464
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=82.34 E-value=0.63 Score=44.52 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=20.5
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+.-+++.|+||+|||++...+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4456778899999999999988753
No 465
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=82.25 E-value=0.59 Score=44.39 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChhHHhhhhcc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~ 387 (445)
..+++.|.||+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999875
No 466
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=82.22 E-value=0.61 Score=47.01 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.3
Q ss_pred ccccCcEEEEEcCCCCChhHHhhhhc
Q psy1007 361 RIRSGIKSVIVGEPNVGKSSLMNFLC 386 (445)
Q Consensus 361 ~~~~~~~v~lvG~~~vGKSsLln~l~ 386 (445)
.+..|-.+.|+|+||+|||||++.++
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 45677789999999999999999664
No 467
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=82.18 E-value=0.62 Score=45.20 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=19.8
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLC 386 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~ 386 (445)
.+| ..+++|++|+|||||+.++.
T Consensus 23 ~~g-~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 23 SDR-VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp CSS-EEEEECCTTTCSTHHHHHHH
T ss_pred CCC-cEEEECCCCCcHHHHHHHHH
Confidence 356 67899999999999999886
No 468
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=82.12 E-value=0.62 Score=54.01 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=23.7
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+|-+++++|++|+|||||++.+++-
T Consensus 1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1057 KKGQTLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp CSSSEEEEECSSSTTHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999999974
No 469
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=81.98 E-value=0.63 Score=42.86 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChhHHhhhhccc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+..+++.|.+|+||||+.+.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 467899999999999999998754
No 470
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=81.93 E-value=0.61 Score=45.62 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHhhhhccc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+++.|++|+||||+++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988753
No 471
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=81.72 E-value=0.69 Score=45.97 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=20.4
Q ss_pred cccCcEEEEEcCCCCChhHHhhhh
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFL 385 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l 385 (445)
.++..+++++|.+++||||+++.+
T Consensus 30 ~~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 30 SARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHH
T ss_pred hcCccEEEEECCCCCcHHHHHHHH
Confidence 346789999999999999998875
No 472
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=81.59 E-value=0.61 Score=48.90 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=21.7
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
++..++++|+||+|||||++.+.+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999999999988753
No 473
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=81.52 E-value=0.54 Score=45.29 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCChhHHhhhhccc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+-.+++.|+||+|||+|++.+...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346889999999999999988753
No 474
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=81.42 E-value=0.75 Score=42.05 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.4
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
+|.-+++.|.+|+||||+++.|..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999999999865
No 475
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=81.27 E-value=0.66 Score=45.34 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChhHHhhhhccc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
..++++|++|+|||+|...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 45789999999999999998764
No 476
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=81.19 E-value=0.67 Score=47.52 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=21.7
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
....|+++|.||+||||+.+.|...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998754
No 477
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=81.05 E-value=0.67 Score=43.80 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCCChhHHhhhhcc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
+..+++.|+||+|||++.+.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998865
No 478
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=80.90 E-value=0.68 Score=41.07 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHhhhhcc
Q psy1007 367 KSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 367 ~v~lvG~~~vGKSsLln~l~~ 387 (445)
.+++.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998865
No 479
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=80.82 E-value=0.62 Score=44.70 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=17.7
Q ss_pred cCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
+.+.|++.|++|+||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998865
No 480
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=80.53 E-value=0.7 Score=48.12 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=23.3
Q ss_pred cccCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 362 IRSGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 362 ~~~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+.+|-.++++|++|+|||||++.+++.
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 346778999999999999999999864
No 481
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=80.26 E-value=0.87 Score=45.96 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=21.3
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+..++++|.||+||||+.+.|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3457889999999999999998764
No 482
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=80.21 E-value=0.83 Score=44.13 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCChhHHhhhhcc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
+..+.+.|+||+|||+|+.++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999988765
No 483
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=80.06 E-value=0.7 Score=43.87 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChhHHhhhhccc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
..+++.|+||+|||++.+.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36899999999999999988753
No 484
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=80.04 E-value=0.84 Score=40.99 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCChhHHhhhhccc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
...+++.|.+|+||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 367899999999999999988754
No 485
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.82 E-value=0.67 Score=45.07 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=19.0
Q ss_pred EEEEcCCCCChhHHhhhhccc
Q psy1007 368 SVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 368 v~lvG~~~vGKSsLln~l~~~ 388 (445)
+++.|++|+||||+++.+++.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988764
No 486
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=79.65 E-value=0.78 Score=45.56 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=20.6
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.+| .++++|++|+||||+++++..
T Consensus 25 ~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 25 PEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cCC-eEEEECCCCCChhHHHHHHHH
Confidence 356 688999999999999998874
No 487
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=79.64 E-value=0.79 Score=44.70 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=21.4
Q ss_pred ccCcEEEEEcCCCCChhHHhhhhcc
Q psy1007 363 RSGIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 363 ~~~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
.++..++++|++|+||||++..|.+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3566889999999999999988865
No 488
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=79.61 E-value=0.22 Score=46.27 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=18.4
Q ss_pred EEEEcCCCCChhHHhhhhccc
Q psy1007 368 SVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 368 v~lvG~~~vGKSsLln~l~~~ 388 (445)
++|+|++|+|||||++.+++-
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 478899999999999998764
No 489
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=79.56 E-value=0.83 Score=42.76 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCChhHHhhhhccc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
..+++.|+||+|||++...+...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 46889999999999999988753
No 490
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=79.27 E-value=2.5 Score=36.17 Aligned_cols=66 Identities=15% Similarity=0.022 Sum_probs=29.4
Q ss_pred ccCCeEEEeeeccccccCCChhHHHHHHHHHHHHHHHHhhccCcceeeecccccccccccCc------EEEEEcCCCCCh
Q psy1007 305 RSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGI------KSVIVGEPNVGK 378 (445)
Q Consensus 305 ~~gi~~vIvl~k~e~~~Dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~------~v~lvG~~~vGK 378 (445)
..+++++||.||+|+..+-.... ++..+..+..+ .+++.+|++.+..+..-+ -.-.-|..++||
T Consensus 109 ~~~~p~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~-------~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~gk 178 (181)
T 3t5g_A 109 KVQIPIMLVGNKKDLHMERVISY---EEGKALAESWN-------AAFLESSAKENQTAVDVFRRIILEAEKMDGACSQGK 178 (181)
T ss_dssp ---CCEEEEEECTTCTTTCCSCH---HHHHHHHHHTT-------CEEEECCTTSHHHHHHHHHHHHHHHHTC-----CCB
T ss_pred CCCCCEEEEEECccchhcceecH---HHHHHHHHHhC-------CcEEEEecCCCCCHHHHHHHHHHHHHHhcCCcccCc
Confidence 45789999999977632211111 11222222222 467778888875442100 000125667777
Q ss_pred hH
Q psy1007 379 SS 380 (445)
Q Consensus 379 Ss 380 (445)
||
T Consensus 179 ss 180 (181)
T 3t5g_A 179 SS 180 (181)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 491
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=79.26 E-value=0.92 Score=42.24 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.0
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+|.-+++.|.+|+||||+++.|...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999999998753
No 492
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=79.20 E-value=0.92 Score=41.64 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=22.2
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+|.-+++.|.+|+||||+.+.|...
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~ 28 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKK 28 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999999998764
No 493
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=78.95 E-value=0.84 Score=44.00 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCChhHHhhhhcc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
+..++++|++|+||||+++.|..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 66788999999999999998873
No 494
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=78.94 E-value=1.1 Score=44.47 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.7
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
.+..++++|++|+|||++++.++..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 4567899999999999999998864
No 495
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=78.91 E-value=0.91 Score=40.80 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCChhHHhhhhcc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQ 387 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~ 387 (445)
+..+++.|.+|+||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999988765
No 496
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=78.78 E-value=0.98 Score=41.31 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.6
Q ss_pred cCcEEEEEcCCCCChhHHhhhhccc
Q psy1007 364 SGIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 364 ~~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+|.-+++.|.+|+||||.++.|...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4677899999999999999998753
No 497
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=78.72 E-value=0.89 Score=44.50 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChhHHhhhhccc
Q psy1007 366 IKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 366 ~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
..++++|++|+||||+...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999988754
No 498
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=78.71 E-value=1.2 Score=40.53 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=21.3
Q ss_pred ccccCcEEEEEcCCCCChhHHhhhhc
Q psy1007 361 RIRSGIKSVIVGEPNVGKSSLMNFLC 386 (445)
Q Consensus 361 ~~~~~~~v~lvG~~~vGKSsLln~l~ 386 (445)
.+..|-.+++.|+||+|||+|...++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 45567788999999999999977654
No 499
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=78.68 E-value=0.92 Score=44.22 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCChhHHhhhhccc
Q psy1007 365 GIKSVIVGEPNVGKSSLMNFLCQK 388 (445)
Q Consensus 365 ~~~v~lvG~~~vGKSsLln~l~~~ 388 (445)
+..++|.|+||+|||++...+...
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988753
No 500
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=78.43 E-value=0.54 Score=40.91 Aligned_cols=46 Identities=15% Similarity=0.090 Sum_probs=25.7
Q ss_pred cCCeEEEeeeccccccCCChhHHHHHHHHHHHHHHHHhhccCcceeeeccccccccc
Q psy1007 306 SGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRI 362 (445)
Q Consensus 306 ~gi~~vIvl~k~e~~~Dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 362 (445)
.+++.+||+||+|+...-.. .+...+..++.+ ++++.+|++.+..+
T Consensus 120 ~~~p~ilv~nK~Dl~~~~~~----~~~~~~~~~~~~-------~~~~~~Sa~~~~gi 165 (195)
T 1x3s_A 120 NDIVNMLVGNKIDKENREVD----RNEGLKFARKHS-------MLFIEASAKTCDGV 165 (195)
T ss_dssp SCCEEEEEEECTTSSSCCSC----HHHHHHHHHHTT-------CEEEECCTTTCTTH
T ss_pred CCCcEEEEEECCcCcccccC----HHHHHHHHHHcC-------CEEEEecCCCCCCH
Confidence 57899999999886211111 112222222222 56777888877543
Done!