Your job contains 1 sequence.
>psy1007
MEKKSKKAAKEKAVIFFSRRCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMA
CYPDQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSM
ACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVIN
AILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGN
LKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKC
GVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGV
RIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDT
AGLRTTTSDIIETEGNLLEKNNQQR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1007
(445 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-050522-335 - symbol:gtpbp3 "GTP binding pro... 558 5.5e-54 1
FB|FBgn0039189 - symbol:CG18528 species:7227 "Drosophila ... 546 1.0e-52 1
UNIPROTKB|Q969Y2 - symbol:GTPBP3 "tRNA modification GTPas... 502 4.7e-48 1
UNIPROTKB|E1BH64 - symbol:E1BH64 "Uncharacterized protein... 501 6.0e-48 1
MGI|MGI:1917609 - symbol:Gtpbp3 "GTP binding protein 3" s... 476 2.7e-45 1
RGD|1305367 - symbol:Gtpbp3 "GTP binding protein 3" speci... 473 5.6e-45 1
TIGR_CMR|GSU_3465 - symbol:GSU_3465 "tRNA modification GT... 282 3.2e-44 2
DICTYBASE|DDB_G0270228 - symbol:gtpbp3 "GTP-binding prote... 438 2.8e-41 1
TIGR_CMR|ECH_0060 - symbol:ECH_0060 "tRNA modification GT... 425 6.8e-40 1
TIGR_CMR|APH_1288 - symbol:APH_1288 "tRNA modification GT... 405 8.9e-38 1
POMBASE|SPAC222.05c - symbol:mss1 "mitochondrial GTPase (... 397 6.3e-37 1
ASPGD|ASPL0000007078 - symbol:AN6522 species:162425 "Emer... 398 1.1e-36 1
TIGR_CMR|NSE_0717 - symbol:NSE_0717 "tRNA modification GT... 387 7.2e-36 1
TIGR_CMR|SPO_3895 - symbol:SPO_3895 "tRNA modification GT... 371 3.6e-34 1
SGD|S000004625 - symbol:MSS1 "Mitochondrial protein" spec... 355 2.3e-32 1
TIGR_CMR|CBU_1922 - symbol:CBU_1922 "tRNA modification GT... 352 3.7e-32 1
TIGR_CMR|CPS_5049 - symbol:CPS_5049 "tRNA modification GT... 344 2.6e-31 1
CGD|CAL0004408 - symbol:orf19.2042 species:5476 "Candida ... 339 1.8e-30 1
UNIPROTKB|P25522 - symbol:mnmE "GTP-binding protein with ... 335 2.3e-30 1
UNIPROTKB|Q9KVY5 - symbol:mnmE "tRNA modification GTPase ... 335 2.3e-30 1
TIGR_CMR|VC_0003 - symbol:VC_0003 "thiophene and furan ox... 335 2.3e-30 1
TIGR_CMR|SO_0003 - symbol:SO_0003 "tRNA modification GTPa... 315 1.4e-27 1
TIGR_CMR|CHY_0006 - symbol:CHY_0006 "tRNA modification GT... 315 1.9e-27 1
TIGR_CMR|BA_5734 - symbol:BA_5734 "tRNA modification GTPa... 307 2.4e-27 2
UNIPROTKB|E2RE04 - symbol:GTPBP3 "Uncharacterized protein... 290 8.0e-25 1
TIGR_CMR|CJE_1036 - symbol:CJE_1036 "tRNA modification GT... 266 8.4e-21 1
WB|WBGene00009557 - symbol:F39B2.7 species:6239 "Caenorha... 261 3.3e-20 1
TAIR|locus:2029406 - symbol:AT1G78010 species:3702 "Arabi... 240 2.0e-17 1
UNIPROTKB|P75104 - symbol:mnmE "tRNA modification GTPase ... 214 1.0e-14 1
TIGR_CMR|CHY_1919 - symbol:CHY_1919 "GTP-binding protein"... 153 7.1e-08 1
UNIPROTKB|Q3Z6P5 - symbol:der "GTPase Der" species:243164... 153 7.1e-08 1
TIGR_CMR|DET_1395 - symbol:DET_1395 "GTP-binding protein"... 153 7.1e-08 1
UNIPROTKB|Q5LR04 - symbol:der "GTPase Der" species:246200... 141 1.8e-06 1
TIGR_CMR|SPO_2328 - symbol:SPO_2328 "GTP-binding protein ... 141 1.8e-06 1
DICTYBASE|DDB_G0279259 - symbol:DDB_G0279259 "putative GT... 139 6.6e-06 1
UNIPROTKB|Q47WC5 - symbol:der "GTPase Der" species:167879... 132 2.2e-05 2
TIGR_CMR|CPS_4247 - symbol:CPS_4247 "GTP-binding protein ... 132 2.2e-05 2
UNIPROTKB|Q81SW9 - symbol:der "GTPase Der" species:1392 "... 130 2.5e-05 1
TIGR_CMR|BA_1525 - symbol:BA_1525 "GTPase family protein"... 130 2.5e-05 1
UNIPROTKB|P0A6P5 - symbol:der "50S ribosomal subunit stab... 130 3.0e-05 1
UNIPROTKB|Q2GDM7 - symbol:NSE_0536 "GTPase Der" species:2... 127 6.0e-05 1
TIGR_CMR|NSE_0536 - symbol:NSE_0536 "putative GTP-binding... 127 6.0e-05 1
UNIPROTKB|Q8EC36 - symbol:der "GTPase Der" species:211586... 126 8.1e-05 1
TIGR_CMR|SO_3308 - symbol:SO_3308 "GTP-binding protein En... 126 8.1e-05 1
UNIPROTKB|P64057 - symbol:der "GTPase Der" species:1773 "... 125 9.7e-05 1
TAIR|locus:2099277 - symbol:emb2738 "embryo defective 273... 127 9.8e-05 1
TIGR_CMR|CJE_0435 - symbol:CJE_0435 "GTPase family protei... 124 0.00012 1
UNIPROTKB|Q74AX4 - symbol:der "GTPase Der" species:243231... 123 0.00015 1
TIGR_CMR|GSU_2225 - symbol:GSU_2225 "GTP-binding protein ... 123 0.00015 1
UNIPROTKB|Q2GKV6 - symbol:der "GTPase Der" species:212042... 123 0.00015 1
TIGR_CMR|APH_0390 - symbol:APH_0390 "putative GTP-binding... 123 0.00015 1
UNIPROTKB|Q2GGW4 - symbol:engA "GTPase Der" species:20592... 123 0.00015 1
TIGR_CMR|ECH_0504 - symbol:ECH_0504 "GTP-binding protein ... 123 0.00015 1
UNIPROTKB|Q9KTW7 - symbol:der "GTPase Der" species:243277... 123 0.00018 1
TIGR_CMR|VC_0763 - symbol:VC_0763 "GTP-binding protein" s... 123 0.00018 1
UNIPROTKB|Q83C83 - symbol:der "GTPase Der" species:227377... 121 0.00025 1
TIGR_CMR|CBU_1245 - symbol:CBU_1245 "GTP-binding protein"... 121 0.00025 1
UNIPROTKB|Q8EAH6 - symbol:hydF "Fe hydrogenase maturation... 120 0.00027 1
TIGR_CMR|SO_3926 - symbol:SO_3926 "GTP-binding protein" s... 120 0.00027 1
TAIR|locus:2154915 - symbol:AT5G66470 species:3702 "Arabi... 119 0.00039 1
UNIPROTKB|Q74AX3 - symbol:era "GTPase Era" species:243231... 115 0.00057 1
TIGR_CMR|GSU_2226 - symbol:GSU_2226 "GTP-binding protein ... 115 0.00057 1
>ZFIN|ZDB-GENE-050522-335 [details] [associations]
symbol:gtpbp3 "GTP binding protein 3" species:7955
"Danio rerio" [GO:0005525 "GTP binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006184 "GTP catabolic process"
evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
InterPro:IPR004520 InterPro:IPR005225 InterPro:IPR006073
Pfam:PF01926 ZFIN:ZDB-GENE-050522-335 GO:GO:0005525
TIGRFAMs:TIGR00231 GO:GO:0005739 GO:GO:0003924 GO:GO:0006400
EMBL:BC095801 IPI:IPI00500987 RefSeq:NP_001018605.1
UniGene:Dr.41738 HSSP:P25522 ProteinModelPortal:Q501Z5 SMR:Q501Z5
STRING:Q501Z5 GeneID:553807 KEGG:dre:553807 CTD:84705
eggNOG:COG0486 HOGENOM:HOG000200714 HOVERGEN:HBG081577
InParanoid:Q501Z5 KO:K03650 OrthoDB:EOG4WH8KW NextBio:20880525
InterPro:IPR018948 InterPro:IPR025867 Pfam:PF12631 Pfam:PF10396
TIGRFAMs:TIGR00450 Uniprot:Q501Z5
Length = 500
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 114/214 (53%), Positives = 147/214 (68%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GKCGV+V+RVSGP + A++ + + + PR ASLR+I P S+ +LD GL LWFP
Sbjct: 45 GKCGVAVVRVSGPASALAVRRLT----RSLPAPRTASLRSISHPQSKELLDRGLVLWFPG 100
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED EF +HG AVI+ +L AL LPGLRPAE GEF++RAF+ KLDLT+ E L
Sbjct: 101 PASFTGEDSAEFHIHGGPAVISGVLQALGSLPGLRPAEAGEFTRRAFYAGKLDLTEVEGL 160
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AETE QR++AL QM G+L ++Y +W + LA VEA+IDFSEDE+IED +LN
Sbjct: 161 SDLIHAETEAQRRQALRQMAGDLGRIYQDWTDQLKRCLAHVEAFIDFSEDELIEDGVLND 220
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
V V QL +E H+ + G R+RSG+ VI
Sbjct: 221 VDRAVQQLQTDMENHLS-DERRGERLRSGVHVVI 253
Score = 336 (123.3 bits), Expect = 6.4e-48, Sum P(2) = 6.4e-48
Identities = 71/123 (57%), Positives = 86/123 (69%)
Query: 313 CLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVG 372
CLA VEA+IDFSEDE+IED +LN V V QL +E H+ + G R+RSG+ VI G
Sbjct: 197 CLAHVEAFIDFSEDELIEDGVLNDVDRAVQQLQTDMENHLS-DERRGERLRSGVHVVIAG 255
Query: 373 EPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIE 432
N GKSSL+N L Q+ +IV+ GTTRDV+E LDIGGYPV+L DTAGLR T SD +E
Sbjct: 256 STNAGKSSLLNLLTQRPAAIVSPTAGTTRDVLEVPLDIGGYPVLLSDTAGLRDT-SDSVE 314
Query: 433 TEG 435
EG
Sbjct: 315 QEG 317
Score = 184 (69.8 bits), Expect = 6.4e-48, Sum P(2) = 6.4e-48
Identities = 39/76 (51%), Positives = 52/76 (68%)
Query: 21 CSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVD 80
CS +TI++LSSG GKCGV+V+RVSGP + A++ + + +P PR ASLR+I
Sbjct: 28 CSGWPGDDTIYSLSSGQGKCGVAVVRVSGPASALAVRRLT----RSLPAPRTASLRSISH 83
Query: 81 PVSKVVLDEGLCLWFP 96
P SK +LD GL LWFP
Sbjct: 84 PQSKELLDRGLVLWFP 99
Score = 38 (18.4 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
Identities = 20/70 (28%), Positives = 32/70 (45%)
Query: 177 AVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLT---QTEAL----GDLIQAETELQ 229
A ++ ++ LT+LP R P F R N L+ + Q L DL+ AE +
Sbjct: 328 ADLSLVVVDLTQLPSERRHVP-VFL-RGHLKNILERSSQQQQHILILNESDLVSAEQQRS 385
Query: 230 RQKALHQMKG 239
Q +L ++ G
Sbjct: 386 IQTSLQELSG 395
>FB|FBgn0039189 [details] [associations]
symbol:CG18528 species:7227 "Drosophila melanogaster"
[GO:0005525 "GTP binding" evidence=IEA] [GO:0006184 "GTP catabolic
process" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=IEA] [GO:0003924 "GTPase
activity" evidence=IEA] HAMAP:MF_00379 InterPro:IPR004520
InterPro:IPR005225 InterPro:IPR006073 Pfam:PF01926 GO:GO:0005525
TIGRFAMs:TIGR00231 EMBL:AE014297 GO:GO:0046872 GO:GO:0003924
GO:GO:0005622 GO:GO:0006400 HSSP:Q9X1F8 eggNOG:COG0486 KO:K03650
InterPro:IPR018948 InterPro:IPR025867 Pfam:PF12631 Pfam:PF10396
TIGRFAMs:TIGR00450 GeneTree:ENSGT00390000016851 EMBL:AY071544
EMBL:AY071692 RefSeq:NP_651251.3 UniGene:Dm.5798 SMR:Q9VC87
IntAct:Q9VC87 MINT:MINT-821147 STRING:Q9VC87
EnsemblMetazoa:FBtr0084628 GeneID:42906 KEGG:dme:Dmel_CG18528
UCSC:CG18528-RA FlyBase:FBgn0039189 InParanoid:Q9VC87 OMA:LTQTRHR
OrthoDB:EOG4HQC0H GenomeRNAi:42906 NextBio:831200 Uniprot:Q9VC87
Length = 493
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 111/215 (51%), Positives = 147/215 (68%)
Query: 98 HGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
H KCGVSVIRVSGP T AL+++ + + K R A L++ P S+ ++D GL LWFP
Sbjct: 32 HVKCGVSVIRVSGPQTKKALRAIVANKEYE-PKARQAYLKSFYHPASKEMIDRGLLLWFP 90
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
P SFTGED CEFQVHGS+AVI A+L AL K+ GLRPAEPGEF+KRAFF KLDLT+ E
Sbjct: 91 GPASFTGEDSCEFQVHGSLAVIAAMLDALGKVDGLRPAEPGEFTKRAFFGGKLDLTEVEG 150
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
L DLI AETE QR++AL Q G L +LY WR+ ++ A +EAYIDF+E+E IE I+
Sbjct: 151 LADLIHAETEAQRKQALLQSTGALARLYDNWRRRLIRCAAHLEAYIDFAEEEQIEGGIIL 210
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
+ ++ + I +H+ + G +R G+++VI
Sbjct: 211 QLGKELKAVKREIREHLS-DQRQGELLRDGVRTVI 244
Score = 312 (114.9 bits), Expect = 4.1e-43, Sum P(2) = 4.1e-43
Identities = 63/129 (48%), Positives = 86/129 (66%)
Query: 313 CLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVG 372
C A +EAYIDF+E+E IE I+ + ++ + I +H+ + G +R G+++VI+G
Sbjct: 188 CAAHLEAYIDFAEEEQIEGGIILQLGKELKAVKREIREHLS-DQRQGELLRDGVRTVIIG 246
Query: 373 EPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIE 432
PNVGKSSL+N LCQ+ +SIVT GTTRD+IE + GGYPV+ DTAGLR T+D IE
Sbjct: 247 APNVGKSSLLNLLCQRSVSIVTDQAGTTRDIIETMHNFGGYPVVFSDTAGLRRYTTDSIE 306
Query: 433 TEGNLLEKN 441
EG KN
Sbjct: 307 QEGMQRAKN 315
Score = 185 (70.2 bits), Expect = 4.1e-43, Sum P(2) = 4.1e-43
Identities = 37/68 (54%), Positives = 48/68 (70%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TI++LSSGH KCGVSVIRVSGP T AL+++ + + PK R A L++ P SK ++D
Sbjct: 24 TIYSLSSGHVKCGVSVIRVSGPQTKKALRAIVANKEYE-PKARQAYLKSFYHPASKEMID 82
Query: 89 EGLCLWFP 96
GL LWFP
Sbjct: 83 RGLLLWFP 90
>UNIPROTKB|Q969Y2 [details] [associations]
symbol:GTPBP3 "tRNA modification GTPase GTPBP3,
mitochondrial" species:9606 "Homo sapiens" [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR004520 InterPro:IPR005225 InterPro:IPR006073
Pfam:PF01926 GO:GO:0005525 TIGRFAMs:TIGR00231 GO:GO:0005739
GO:GO:0005634 GO:GO:0046872 GO:GO:0003924 GO:GO:0006400
EMBL:CH471106 EMBL:AC010463 CTD:84705 eggNOG:COG0486
HOVERGEN:HBG081577 KO:K03650 OrthoDB:EOG4WH8KW InterPro:IPR018948
InterPro:IPR025867 Pfam:PF12631 Pfam:PF10396 EMBL:AF360742
EMBL:AF361481 EMBL:AF360743 EMBL:AF360744 EMBL:AY078987
EMBL:AY078988 EMBL:AK027606 EMBL:AK291929 EMBL:AK297953
EMBL:BC017207 EMBL:BC019261 IPI:IPI00464994 IPI:IPI00644024
IPI:IPI00783945 IPI:IPI00982192 RefSeq:NP_001122327.1
RefSeq:NP_001182351.1 RefSeq:NP_116009.2 RefSeq:NP_598399.2
UniGene:Hs.334885 HSSP:Q9WYA4 ProteinModelPortal:Q969Y2 SMR:Q969Y2
IntAct:Q969Y2 MINT:MINT-2877402 STRING:Q969Y2 PhosphoSite:Q969Y2
DMDM:74731069 PaxDb:Q969Y2 PRIDE:Q969Y2 DNASU:84705
Ensembl:ENST00000324894 Ensembl:ENST00000358792
Ensembl:ENST00000361619 GeneID:84705 KEGG:hsa:84705 UCSC:uc002ngg.4
UCSC:uc002ngh.4 UCSC:uc010eas.3 GeneCards:GC19P017448
H-InvDB:HIX0014890 HGNC:HGNC:14880 HPA:HPA042158 MIM:580000
MIM:608536 neXtProt:NX_Q969Y2 PharmGKB:PA134883205 OMA:PGEFSEQ
GenomeRNAi:84705 NextBio:74792 ArrayExpress:Q969Y2 Bgee:Q969Y2
CleanEx:HS_GTPBP3 Genevestigator:Q969Y2 Uniprot:Q969Y2
Length = 492
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 103/214 (48%), Positives = 142/214 (66%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+CG++VIR SGP + +AL+ + D ++ R+ASLR + DP S LD L LWFP
Sbjct: 44 GRCGIAVIRTSGPASGHALRILTAPRDLPLA--RHASLRLLSDPRSGEPLDRALVLWFPG 101
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF N KL+LT+ E L
Sbjct: 102 PQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEGL 161
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 162 ADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLEQ 221
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
+V L ++ H+ + + G R+RSG+ V+
Sbjct: 222 ADIEVRALQVALGAHLRDARR-GQRLRSGVHVVV 254
Score = 279 (103.3 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 61/142 (42%), Positives = 89/142 (62%)
Query: 295 ELSNKCGVRIRSGIKSVI-CLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIE 353
+L + G R +++ LA VEAYIDF ED+ +E+ +L +V L ++ H+
Sbjct: 179 QLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLEQADIEVRALQVALGAHLR 238
Query: 354 LSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY 413
+ + G R+RSG+ V+ G PN GKSSL+N L +K +SIV+ PGTTRDV+E +D+ G+
Sbjct: 239 DARR-GQRLRSGVHVVVTGPPNAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGF 297
Query: 414 PVILLDTAGLRTTTSDIIETEG 435
PV+L DTAGLR + E EG
Sbjct: 298 PVLLSDTAGLREGVGPV-EQEG 318
Score = 165 (63.1 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 36/68 (52%), Positives = 46/68 (67%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+ + D +P R+ASLR + DP S LD
Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRD--LPLARHASLRLLSDPRSGEPLD 92
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 93 RALVLWFP 100
>UNIPROTKB|E1BH64 [details] [associations]
symbol:E1BH64 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005525 "GTP
binding" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
HAMAP:MF_00379 InterPro:IPR004520 InterPro:IPR005225
InterPro:IPR006073 Pfam:PF01926 GO:GO:0005525 TIGRFAMs:TIGR00231
GO:GO:0005739 GO:GO:0046872 GO:GO:0003924 GO:GO:0006400
InterPro:IPR018948 InterPro:IPR025867 Pfam:PF12631 Pfam:PF10396
OMA:PGEFSEQ GeneTree:ENSGT00390000016851 EMBL:DAAA02019078
IPI:IPI00710937 ProteinModelPortal:E1BH64
Ensembl:ENSBTAT00000005506 Uniprot:E1BH64
Length = 493
Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
Identities = 104/214 (48%), Positives = 143/214 (66%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+CG++VIR SGP + +AL+S+ D ++ R A LR + DP S LD L LWFP
Sbjct: 46 GRCGIAVIRTSGPASGHALQSLTAPRDLPLA--RKACLRLLSDPRSGEPLDRALVLWFPG 103
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF + KL LT+ E L
Sbjct: 104 PQSFTGEDCAEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLSLTEVEGL 163
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AETE QR++AL Q+ G L L W + + ++LA VEAYIDFSED+ +E+ +L+
Sbjct: 164 ADLIHAETEAQRRQALRQLDGELGDLCRGWAETLTKALAHVEAYIDFSEDDNLEEGVLDQ 223
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
S+V +L ++ H+ + + G R+RSG V+
Sbjct: 224 ADSEVRKLEVALGVHLRDARR-GQRLRSGAHVVV 256
Score = 283 (104.7 bits), Expect = 8.3e-36, Sum P(2) = 8.3e-36
Identities = 62/142 (43%), Positives = 91/142 (64%)
Query: 295 ELSNKCGVRIRSGIKSVI-CLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIE 353
+L + G R +++ LA VEAYIDFSED+ +E+ +L+ S+V +L ++ H+
Sbjct: 181 QLDGELGDLCRGWAETLTKALAHVEAYIDFSEDDNLEEGVLDQADSEVRKLEVALGVHLR 240
Query: 354 LSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY 413
+ + G R+RSG V+ G PN GKSSL+N L +K +SIV+ PGTTRDV+E +D+ G+
Sbjct: 241 DARR-GQRLRSGAHVVVAGPPNAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGF 299
Query: 414 PVILLDTAGLRTTTSDIIETEG 435
P +L DTAGLR + E EG
Sbjct: 300 PALLSDTAGLREGVGPV-EQEG 320
Score = 161 (61.7 bits), Expect = 8.3e-36, Sum P(2) = 8.3e-36
Identities = 36/68 (52%), Positives = 45/68 (66%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFALSSG G+CG++VIR SGP + +AL+S+ D +P R A LR + DP S LD
Sbjct: 37 TIFALSSGQGRCGIAVIRTSGPASGHALQSLTAPRD--LPLARKACLRLLSDPRSGEPLD 94
Query: 89 EGLCLWFP 96
L LWFP
Sbjct: 95 RALVLWFP 102
>MGI|MGI:1917609 [details] [associations]
symbol:Gtpbp3 "GTP binding protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003924 "GTPase activity" evidence=IEA] [GO:0005525 "GTP
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0006184 "GTP
catabolic process" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR004520 InterPro:IPR005225
InterPro:IPR006073 Pfam:PF01926 MGI:MGI:1917609 GO:GO:0005525
TIGRFAMs:TIGR00231 GO:GO:0005739 GO:GO:0003924 GO:GO:0006400
CTD:84705 eggNOG:COG0486 HOGENOM:HOG000200714 HOVERGEN:HBG081577
KO:K03650 OrthoDB:EOG4WH8KW InterPro:IPR018948 InterPro:IPR025867
Pfam:PF12631 Pfam:PF10396 TIGRFAMs:TIGR00450 HSSP:Q9WYA4
EMBL:AF361482 EMBL:AY029613 EMBL:BC092042 IPI:IPI00338388
IPI:IPI00556865 RefSeq:NP_115933.2 RefSeq:XP_003689533.1
UniGene:Mm.142112 ProteinModelPortal:Q923K4 SMR:Q923K4
STRING:Q923K4 PhosphoSite:Q923K4 PaxDb:Q923K4 PRIDE:Q923K4
Ensembl:ENSMUST00000007754 Ensembl:ENSMUST00000095259
Ensembl:ENSMUST00000150969 GeneID:100862531 GeneID:70359
KEGG:mmu:100862531 KEGG:mmu:70359 GeneTree:ENSGT00390000016851
InParanoid:Q923K4 NextBio:331446 Bgee:Q923K4 CleanEx:MM_GTPBP3
Genevestigator:Q923K4 Uniprot:Q923K4
Length = 492
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 100/214 (46%), Positives = 136/214 (63%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+C ++VIR SGP + AL+S+ Q+ R A LR + P S LD L LWFP
Sbjct: 44 GRCAIAVIRTSGPASGLALRSLTAL--QEPPPARRACLRLLRHPCSGEPLDRSLVLWFPG 101
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGEDC EF VHG AV++ +L AL +PGLRPAE GEF++RAF + KL LT+ E L
Sbjct: 102 PQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLSLTEVEGL 161
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI+AETE QR++AL Q+ G L QL W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 162 ADLIRAETEAQRRQALRQLDGELSQLCQGWAKTLTKALAYVEAYIDFGEDDNLEEGVLEQ 221
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
+V L ++ H+ + + G R+ SG V+
Sbjct: 222 ADREVRALEVALGSHLRDARR-GQRLLSGANVVV 254
Score = 275 (101.9 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
Identities = 63/141 (44%), Positives = 87/141 (61%)
Query: 295 ELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIEL 354
ELS C ++ K+ LA VEAYIDF ED+ +E+ +L +V L ++ H+
Sbjct: 183 ELSQLCQGWAKTLTKA---LAYVEAYIDFGEDDNLEEGVLEQADREVRALEVALGSHLRD 239
Query: 355 SNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP 414
+ + G R+ SG V+ G PN GKSSL+N L QK +SIV+ PGTTRDV+E +D+ G+P
Sbjct: 240 ARR-GQRLLSGANVVVTGPPNAGKSSLVNLLSQKPVSIVSPEPGTTRDVLETPVDLAGFP 298
Query: 415 VILLDTAGLRTTTSDIIETEG 435
V+L DTAGLR +E EG
Sbjct: 299 VLLSDTAGLREGVG-AVEQEG 318
Score = 152 (58.6 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
Identities = 38/81 (46%), Positives = 47/81 (58%)
Query: 20 RCS----HLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASL 75
RCS L +TIFALSSG G+C ++VIR SGP + AL+S+ Q+ P R A L
Sbjct: 22 RCSTSAESLVPSSTIFALSSGQGRCAIAVIRTSGPASGLALRSLTAL--QEPPPARRACL 79
Query: 76 RNIVDPVSKVVLDEGLCLWFP 96
R + P S LD L LWFP
Sbjct: 80 RLLRHPCSGEPLDRSLVLWFP 100
>RGD|1305367 [details] [associations]
symbol:Gtpbp3 "GTP binding protein 3" species:10116 "Rattus
norvegicus" [GO:0003924 "GTPase activity" evidence=IEA] [GO:0005525
"GTP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006400 "tRNA modification" evidence=IEA]
InterPro:IPR004520 InterPro:IPR005225 InterPro:IPR006073
Pfam:PF01926 RGD:1305367 GO:GO:0005525 TIGRFAMs:TIGR00231
GO:GO:0005739 GO:GO:0003924 GO:GO:0006400 CTD:84705 eggNOG:COG0486
HOGENOM:HOG000200714 HOVERGEN:HBG081577 KO:K03650 OrthoDB:EOG4WH8KW
InterPro:IPR018948 InterPro:IPR025867 Pfam:PF12631 Pfam:PF10396
TIGRFAMs:TIGR00450 HSSP:Q9WYA4 GeneTree:ENSGT00390000016851
EMBL:BC087083 IPI:IPI00358231 RefSeq:NP_001011919.1
UniGene:Rn.109111 ProteinModelPortal:Q5PQQ1 STRING:Q5PQQ1
PhosphoSite:Q5PQQ1 PRIDE:Q5PQQ1 Ensembl:ENSRNOT00000060355
GeneID:290633 KEGG:rno:290633 UCSC:RGD:1305367 NextBio:631337
Genevestigator:Q5PQQ1 Uniprot:Q5PQQ1
Length = 492
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 99/214 (46%), Positives = 135/214 (63%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+C ++VIR SGP + AL+S+ + + R A LR + P S LD L LWFP
Sbjct: 44 GRCAIAVIRTSGPASGLALRSLTALREPPPA--RSACLRLLRHPCSGEPLDRSLVLWFPG 101
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGEDC E VHG AV++ +L AL +PGLRPA+ GEF++RAF + KL LT+ E L
Sbjct: 102 PQSFTGEDCMELHVHGGPAVVSGVLQALGSVPGLRPAKAGEFTRRAFAHGKLSLTEVEGL 161
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AETE QR++AL Q+ G L QL W + + ++LA VEAYIDF ED+ +E+ +L
Sbjct: 162 ADLIHAETEAQRRQALRQLDGELSQLCQGWAKTLTKALAHVEAYIDFGEDDNLEEGVLEQ 221
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
V V L ++ H+ + + G R+RSG V+
Sbjct: 222 VDRDVRALEVALSSHLRDARR-GQRLRSGANVVV 254
Score = 286 (105.7 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 64/141 (45%), Positives = 88/141 (62%)
Query: 295 ELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIEL 354
ELS C ++ K+ LA VEAYIDF ED+ +E+ +L V V L ++ H+
Sbjct: 183 ELSQLCQGWAKTLTKA---LAHVEAYIDFGEDDNLEEGVLEQVDRDVRALEVALSSHLRD 239
Query: 355 SNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP 414
+ + G R+RSG V+ G PN GKSSL+N L QK +SIV+ PGTTRD++E +D+ G+P
Sbjct: 240 ARR-GQRLRSGANVVVAGPPNAGKSSLVNLLSQKPVSIVSPEPGTTRDILETPVDLAGFP 298
Query: 415 VILLDTAGLRTTTSDIIETEG 435
V+L DTAGLR +E EG
Sbjct: 299 VLLSDTAGLREGAG-AVEQEG 318
Score = 146 (56.5 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 37/81 (45%), Positives = 47/81 (58%)
Query: 20 RCS----HLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASL 75
RCS L +TIFALSSG G+C ++VIR SGP + AL+S+ ++ P R A L
Sbjct: 22 RCSTGAESLVPGSTIFALSSGQGRCAIAVIRTSGPASGLALRSLTAL--REPPPARSACL 79
Query: 76 RNIVDPVSKVVLDEGLCLWFP 96
R + P S LD L LWFP
Sbjct: 80 RLLRHPCSGEPLDRSLVLWFP 100
>TIGR_CMR|GSU_3465 [details] [associations]
symbol:GSU_3465 "tRNA modification GTPase TrmE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] HAMAP:MF_00379 InterPro:IPR004520 InterPro:IPR005225
InterPro:IPR006073 Pfam:PF01926 GO:GO:0005525 TIGRFAMs:TIGR00231
GO:GO:0005737 GO:GO:0046872 GO:GO:0003924 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0006400 HSSP:Q9X1F8 eggNOG:COG0486
KO:K03650 InterPro:IPR018948 InterPro:IPR025867 Pfam:PF12631
Pfam:PF10396 TIGRFAMs:TIGR00450 OMA:PGEFSEQ ProtClustDB:PRK05291
HOGENOM:HOG000200713 RefSeq:NP_954505.1 ProteinModelPortal:Q746Q3
GeneID:2686588 KEGG:gsu:GSU3465 PATRIC:22029787
BioCyc:GSUL243231:GH27-3432-MONOMER Uniprot:Q746Q3
Length = 456
Score = 282 (104.3 bits), Expect = 3.2e-44, Sum P(2) = 3.2e-44
Identities = 69/176 (39%), Positives = 100/176 (56%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLR----NIVDPVSEVVLDEGLCL 154
G+ GV ++RVSGPD S+A ++ S + S R ++VD V+ +DE + +
Sbjct: 15 GEGGVGIVRVSGPDA----PSIARRVFRRGSNGDFESHRFYYGSVVDAVTGEAVDEAMAV 70
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
+P S+T ED E Q HG V +L L G R AEPGEF++RAF N ++DL Q
Sbjct: 71 LMVRPRSYTREDVLEIQCHGGYLVTRRVL-ELVLAAGARLAEPGEFTRRAFLNGRIDLVQ 129
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEI 270
EA+ D+I+A+T+ A HQ +G L Q + ++LA VEA+IDF ED+I
Sbjct: 130 AEAVIDVIRAKTDAALALAQHQRQGRLSQRLDTVMAELRQALALVEAFIDFPEDDI 185
Score = 239 (89.2 bits), Expect = 3.2e-44, Sum P(2) = 3.2e-44
Identities = 55/122 (45%), Positives = 84/122 (68%)
Query: 314 LASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGE 373
LA VEA+IDF ED+I + + + V + ++ + I ++ G +R G+ +I G+
Sbjct: 171 LALVEAFIDFPEDDI-DPAAQDALTVHVRKAAETVGELIAGFDE-GRVLREGVAVLIAGK 228
Query: 374 PNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIET 433
PNVGKSSL+N L Q++ +IVTS+PGTTRD+IE+ ++I G P+ ++DTAG+R T DI+E
Sbjct: 229 PNVGKSSLLNTLLQEKRAIVTSVPGTTRDIIEEVVNIRGLPLRMIDTAGIRDT-EDIVEK 287
Query: 434 EG 435
EG
Sbjct: 288 EG 289
Score = 76 (31.8 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSM---ACYPDQKVPKPRYASLRNIVDPV 82
+++TI A+S+ G+ GV ++RVSGPD + + + D + + Y S +VD V
Sbjct: 3 VEDTIAAISTAAGEGGVGIVRVSGPDAPSIARRVFRRGSNGDFESHRFYYGS---VVDAV 59
Query: 83 SKVVLDEGLCLWFPR 97
+ +DE + + R
Sbjct: 60 TGEAVDEAMAVLMVR 74
>DICTYBASE|DDB_G0270228 [details] [associations]
symbol:gtpbp3 "GTP-binding protein 3" species:44689
"Dictyostelium discoideum" [GO:0006400 "tRNA modification"
evidence=IEA;ISS] [GO:0006184 "GTP catabolic process" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005525 "GTP binding"
evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA;ISS] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004520 InterPro:IPR005225
InterPro:IPR006073 Pfam:PF01926 dictyBase:DDB_G0270228
GO:GO:0005525 TIGRFAMs:TIGR00231 GO:GO:0005739 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003924 GO:GO:0006400 HSSP:P25522
eggNOG:COG0486 KO:K03650 InterPro:IPR018948 InterPro:IPR025867
Pfam:PF12631 Pfam:PF10396 TIGRFAMs:TIGR00450 RefSeq:XP_646629.1
ProteinModelPortal:Q55C52 STRING:Q55C52 EnsemblProtists:DDB0267051
GeneID:8617601 KEGG:ddi:DDB_G0270228 OMA:IRISGTH
ProtClustDB:CLSZ2431449 Uniprot:Q55C52
Length = 512
Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
Identities = 87/217 (40%), Positives = 133/217 (61%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPD---QKVSKPRYASLRNIVDPVSEVVLDEGLCLW 155
GK GV++IRVSGP ++ + D + K RYA+L +P + LD+G+ +W
Sbjct: 36 GKSGVAIIRVSGPQAETVIRKLIKKSDVDKNEEIKSRYATLSTFYNPKTNEQLDKGMFIW 95
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
FP PNSFTGED EF +HG AVI + A+ + G RP+E GEF+KRAF N K+DLTQ
Sbjct: 96 FPSPNSFTGEDVVEFHIHGGRAVIYETMEAIGLIEGTRPSEQGEFTKRAFENGKMDLTQV 155
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
E L DL+ A T Q++ AL QM+G++ + Y R+ ++ + A +EA+IDF +D ++ I
Sbjct: 156 EGLSDLLDASTSFQKKIALKQMQGSISEFYLSLRKDLIRASAYMEAFIDFGDDAELDPEI 215
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
++ R++++ + I++H+ K G R+R G I
Sbjct: 216 VDQSRNRIISIRDKIQQHLN-DGKRGERLRDGANIAI 251
Score = 292 (107.8 bits), Expect = 4.8e-35, Sum P(2) = 4.8e-35
Identities = 59/127 (46%), Positives = 86/127 (67%)
Query: 315 ASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEP 374
A +EA+IDF +D ++ I++ R++++ + I++H+ K G R+R G IVG P
Sbjct: 197 AYMEAFIDFGDDAELDPEIVDQSRNRIISIRDKIQQHLN-DGKRGERLRDGANIAIVGPP 255
Query: 375 NVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETE 434
N GKSSL+N L ++ SIV+ I GTTRD++E LDI GYPVI+ DTAGLR +T+D IE E
Sbjct: 256 NAGKSSLINLLTNRKASIVSPIAGTTRDIVEVILDIDGYPVIIGDTAGLRNSTNDQIEIE 315
Query: 435 GNLLEKN 441
G + K+
Sbjct: 316 GIEMAKD 322
Score = 143 (55.4 bits), Expect = 4.8e-35, Sum P(2) = 4.8e-35
Identities = 31/74 (41%), Positives = 45/74 (60%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPD---QKVPKPRYASLRNIVDPV 82
IK+TI+ LSSG GK GV++IRVSGP ++ + D + K RYA+L +P
Sbjct: 24 IKDTIYNLSSGVGKSGVAIIRVSGPQAETVIRKLIKKSDVDKNEEIKSRYATLSTFYNPK 83
Query: 83 SKVVLDEGLCLWFP 96
+ LD+G+ +WFP
Sbjct: 84 TNEQLDKGMFIWFP 97
>TIGR_CMR|ECH_0060 [details] [associations]
symbol:ECH_0060 "tRNA modification GTPase TrmE"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] HAMAP:MF_00379 InterPro:IPR004520 InterPro:IPR005225
InterPro:IPR006073 Pfam:PF01926 GO:GO:0005525 TIGRFAMs:TIGR00231
GO:GO:0005737 GO:GO:0046872 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0003924 GO:GO:0006400 eggNOG:COG0486 HOGENOM:HOG000200714
KO:K03650 InterPro:IPR018948 InterPro:IPR025867 Pfam:PF12631
Pfam:PF10396 TIGRFAMs:TIGR00450 ProtClustDB:PRK05291 OMA:IDFPEEV
RefSeq:YP_506891.1 ProteinModelPortal:Q2GI42 STRING:Q2GI42
GeneID:3927317 KEGG:ech:ECH_0060 PATRIC:20575687
BioCyc:ECHA205920:GJNR-60-MONOMER Uniprot:Q2GI42
Length = 439
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 93/210 (44%), Positives = 132/210 (62%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV+VIR+SG D A K+ + KPR A+ + D EV+ DE + ++F
Sbjct: 12 GRSGVAVIRISGED---AAKAFVHFGINSSIKPRTATFTPLYDKDGEVI-DEAIVVYFVA 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED EF HGS AVI IL L K+ PA PGEFS RAF NNK+DLT+ EA+
Sbjct: 68 PNSFTGEDVVEFHTHGSFAVIKMILAELGKI--FVPAGPGEFSLRAFLNNKVDLTRAEAI 125
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI +ETE+Q ++A+ QM G L++LY WRQ +++ L+++EAYIDF E+ + + +
Sbjct: 126 VDLINSETEMQAKQAIRQMSGVLEKLYQNWRQQLIDILSNIEAYIDFPEE--VNSSAIAN 183
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGI 308
+ + L S+E H+ ++ G R+R GI
Sbjct: 184 IDYLLNNLQKSLESHLN-DDRRGERLRQGI 212
Score = 271 (100.5 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
Identities = 62/179 (34%), Positives = 106/179 (59%)
Query: 258 SVEAYIDFSEDEIIEDNILNTVRSQV-VQLHGSIEKHIELSNKCGVRIRSGIKSVICLAS 316
S+ A+++ D + I++ + S+ +Q +I + + K R + + L++
Sbjct: 108 SLRAFLNNKVDLTRAEAIVDLINSETEMQAKQAIRQMSGVLEKLYQNWRQQLIDI--LSN 165
Query: 317 VEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNV 376
+EAYIDF E+ + + + + + L S+E H+ ++ G R+R GI I+GEPN
Sbjct: 166 IEAYIDFPEE--VNSSAIANIDYLLNNLQKSLESHLN-DDRRGERLRQGIYVTILGEPNS 222
Query: 377 GKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GKS+L N L ++ I+IV+ GTTRD +E H+D+ GYP+I++DTAG+R +T D +E EG
Sbjct: 223 GKSTLFNHLAKRDIAIVSEYAGTTRDPLEAHIDVAGYPIIIIDTAGIREST-DPVEQEG 280
Score = 94 (38.1 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TIFAL + G+ GV+VIR+SG D A K+ + KPR A+ + D +V+ D
Sbjct: 3 TIFALCTPWGRSGVAVIRISGED---AAKAFVHFGINSSIKPRTATFTPLYDKDGEVI-D 58
Query: 89 EGLCLWF 95
E + ++F
Sbjct: 59 EAIVVYF 65
>TIGR_CMR|APH_1288 [details] [associations]
symbol:APH_1288 "tRNA modification GTPase TrmE"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] HAMAP:MF_00379 InterPro:IPR004520 InterPro:IPR005225
InterPro:IPR006073 Pfam:PF01926 GO:GO:0005525 TIGRFAMs:TIGR00231
GO:GO:0005737 GO:GO:0046872 GO:GO:0003924 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0006400 eggNOG:COG0486
HOGENOM:HOG000200714 KO:K03650 InterPro:IPR018948
InterPro:IPR025867 Pfam:PF12631 Pfam:PF10396 TIGRFAMs:TIGR00450
OMA:PGEFSEQ RefSeq:YP_505803.1 ProteinModelPortal:Q2GIJ8
STRING:Q2GIJ8 GeneID:3930863 KEGG:aph:APH_1288 PATRIC:20951370
ProtClustDB:PRK05291 BioCyc:APHA212042:GHPM-1290-MONOMER
Uniprot:Q2GIJ8
Length = 445
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 90/214 (42%), Positives = 134/214 (62%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+VIR+SGP ++ AL+ + D +S PR A R + D ++ D+ + L+FPK
Sbjct: 17 GKSGVAVIRISGPSSMEALRLLGVKDD--IS-PRVAHCRLLHDSKGRLI-DQAVVLYFPK 72
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E QVHGS AVI + L +R AEPGEFS RA+ N K+DLT+ E +
Sbjct: 73 PGSFTGEDVVELQVHGSRAVIRLLYEELQTF--IRIAEPGEFSLRAYLNGKIDLTRAEGI 130
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AET+ Q ++AL Q G L++ Y +WR ++L+ L +EA IDF ED + +L
Sbjct: 131 ADLINAETDAQLRQALAQSTGKLEKQYDQWRSILLDILTDLEACIDFPED-VDSSCVLGG 189
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
+ + + +L + +++ ++ G R+RSG++ VI
Sbjct: 190 IYNNIEKLCAVLGQYLNDGHR-GERLRSGVRVVI 222
Score = 256 (95.2 bits), Expect = 1.4e-19, P = 1.4e-19
Identities = 68/206 (33%), Positives = 116/206 (56%)
Query: 234 LHQMKGNLKQLYSEWRQLILESLA---SVEAYIDFSEDEIIEDNILNTVRSQV-VQLHGS 289
+H + ++ LY E + I + S+ AY++ D + I + + ++ QL +
Sbjct: 86 VHGSRAVIRLLYEELQTFIRIAEPGEFSLRAYLNGKIDLTRAEGIADLINAETDAQLRQA 145
Query: 290 IEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIE 349
+ + K + RS + + L +EA IDF ED + +L + + + +L +
Sbjct: 146 LAQSTGKLEKQYDQWRSILLDI--LTDLEACIDFPED-VDSSCVLGGIYNNIEKLCAVLG 202
Query: 350 KHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLD 409
+++ ++ G R+RSG++ VI+G PN GKS+L N + ++ +IV+ PGTTRDV+E +D
Sbjct: 203 QYLNDGHR-GERLRSGVRVVILGPPNAGKSTLFNSIARRNAAIVSEHPGTTRDVLEVAID 261
Query: 410 IGGYPVILLDTAGLRTTTSDIIETEG 435
IGGYP I+LDTAG+R + D IE EG
Sbjct: 262 IGGYPYIVLDTAGIRESC-DGIEQEG 286
Score = 137 (53.3 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 40/128 (31%), Positives = 68/128 (53%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFALS+ GK GV+VIR+SGP ++ AL+ + D PR A R + D +++
Sbjct: 7 DTIFALSTAQGKSGVAVIRISGPSSMEALRLLGVKDDIS---PRVAHCRLLHDSKGRLI- 62
Query: 88 DEGLCLWFPRHGK-CGVSVI--RVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVS 144
D+ + L+FP+ G G V+ +V G + L ++++P SLR ++
Sbjct: 63 DQAVVLYFPKPGSFTGEDVVELQVHGSRAVIRLLYEELQTFIRIAEPGEFSLRAYLNGKI 122
Query: 145 EVVLDEGL 152
++ EG+
Sbjct: 123 DLTRAEGI 130
>POMBASE|SPAC222.05c [details] [associations]
symbol:mss1 "mitochondrial GTPase (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003924 "GTPase
activity" evidence=ISM] [GO:0005525 "GTP binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005743 "mitochondrial
inner membrane" evidence=ISO] [GO:0006184 "GTP catabolic process"
evidence=IEA] [GO:0006400 "tRNA modification" evidence=ISO]
[GO:0006412 "translation" evidence=ISO] [GO:0032543 "mitochondrial
translation" evidence=NAS] InterPro:IPR004520 InterPro:IPR005225
InterPro:IPR006073 Pfam:PF01926 PomBase:SPAC222.05c GO:GO:0005525
TIGRFAMs:TIGR00231 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0005743 GO:GO:0003924 GO:GO:0032543 GO:GO:0006400
eggNOG:COG0486 HOGENOM:HOG000200714 KO:K03650 InterPro:IPR018948
InterPro:IPR025867 Pfam:PF12631 Pfam:PF10396 TIGRFAMs:TIGR00450
OMA:IRISGTH PIR:T50146 RefSeq:NP_593144.1 ProteinModelPortal:Q9UTE7
STRING:Q9UTE7 EnsemblFungi:SPAC222.05c.1 GeneID:2541951
KEGG:spo:SPAC222.05c OrthoDB:EOG4B2X62 NextBio:20803035
Uniprot:Q9UTE7
Length = 496
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 88/218 (40%), Positives = 132/218 (60%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G V+++R+SGP+ K++A V KPR ASLR I PV V+D+ L L+F K
Sbjct: 34 GTSAVAIVRISGPNACKVAKTLA----GSVPKPRIASLRTIKHPVRSEVIDKALMLYFKK 89
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTK--LPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P+SFTGED E Q+HG AV++ L A+ + +P +R A+PGEFS+RAF+N + DLTQ E
Sbjct: 90 PSSFTGEDVVELQLHGGTAVVDVTLEAIKQSGIPNIRYAKPGEFSERAFYNGRADLTQLE 149
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
L D+I A+T Q A + G++ + WR+ ++E A +EA IDFSE+ ++D +
Sbjct: 150 GLIDVINAQTAEQLYSANKEAHGSIYDICFRWRKKLIEYRAFLEASIDFSEEHELDD--I 207
Query: 277 NTVR--SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
T++ ++ ++ I+ HIE KC +R GI I
Sbjct: 208 ETIKLFEELNEMKDEIDAHIE-GGKCKEVLRKGINVAI 244
Score = 241 (89.9 bits), Expect = 2.6e-29, Sum P(2) = 2.6e-29
Identities = 64/166 (38%), Positives = 97/166 (58%)
Query: 273 DNILNTVRSQVV-QLHGSI-EKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIE 330
+ +++ + +Q QL+ + E H + + C R R K + A +EA IDFSE+ ++
Sbjct: 149 EGLIDVINAQTAEQLYSANKEAHGSIYDIC-FRWRK--KLIEYRAFLEASIDFSEEHELD 205
Query: 331 DNILNTVR--SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQK 388
D + T++ ++ ++ I+ HIE KC +R GI I+G N GKSSL+N L +
Sbjct: 206 D--IETIKLFEELNEMKDEIDAHIE-GGKCKEVLRKGINVAILGPSNAGKSSLINLLANR 262
Query: 389 QISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETE 434
+ISIV+ GTTRD IE +DI G+PV+L DTAGLR D+ E E
Sbjct: 263 RISIVSPQSGTTRDAIEVLVDINGFPVLLSDTAGLRKG-EDVQEIE 307
Score = 151 (58.2 bits), Expect = 2.6e-29, Sum P(2) = 2.6e-29
Identities = 53/158 (33%), Positives = 78/158 (49%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TI+ALS+ G V+++R+SGP+ K++A VPKPR ASLR I PV V+D
Sbjct: 25 TIYALSTPPGTSAVAIVRISGPNACKVAKTLA----GSVPKPRIASLRTIKHPVRSEVID 80
Query: 89 EGLCLWFPRHGK-CGVSVIRVS---GP---D-TLNALKSMACYPDQKVSKPRYASLRNIV 140
+ L L+F + G V+ + G D TL A+K P+ + +KP S R
Sbjct: 81 KALMLYFKKPSSFTGEDVVELQLHGGTAVVDVTLEAIKQSGI-PNIRYAKPGEFSERAFY 139
Query: 141 DPVSEVVLDEGLCLWFPKPNSFTGEDC--CEFQVHGSI 176
+ +++ EGL N+ T E + HGSI
Sbjct: 140 NGRADLTQLEGL---IDVINAQTAEQLYSANKEAHGSI 174
>ASPGD|ASPL0000007078 [details] [associations]
symbol:AN6522 species:162425 "Emericella nidulans"
[GO:0070899 "mitochondrial tRNA wobble uridine modification"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005743
"mitochondrial inner membrane" evidence=IEA] HAMAP:MF_00379
InterPro:IPR004520 InterPro:IPR005225 InterPro:IPR006073
Pfam:PF01926 GO:GO:0005525 TIGRFAMs:TIGR00231 GO:GO:0046872
GO:GO:0003924 GO:GO:0005622 EMBL:BN001301 EMBL:AACD01000109
GO:GO:0006400 eggNOG:COG0486 HOGENOM:HOG000200714 KO:K03650
InterPro:IPR018948 InterPro:IPR025867 Pfam:PF12631 Pfam:PF10396
OrthoDB:EOG4B2X62 RefSeq:XP_664126.1 ProteinModelPortal:Q5AYV8
STRING:Q5AYV8 EnsemblFungi:CADANIAT00007294 GeneID:2870683
KEGG:ani:AN6522.2 OMA:FSEDQHF Uniprot:Q5AYV8
Length = 614
Score = 398 (145.2 bits), Expect = 1.1e-36, P = 1.1e-36
Identities = 91/225 (40%), Positives = 141/225 (62%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEV------VLDEG- 151
G+ ++V+RVSGP ++ +++ C P + +PR A++R I DP S+ +LD G
Sbjct: 71 GRAAIAVVRVSGPACVSIYQAL-C-PKAPLPRPRVAAVRTIYDPASDEPCGQADILDAGA 128
Query: 152 LCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPG----LRPAEPGEFSKRAFFN 207
L L+ P P + TGED EF +HG A++ ++L A++K G +R AEPGEF++RAF N
Sbjct: 129 LVLYMPGPKTATGEDVLEFHLHGGPAIVKSVLSAISKTSGKEHSVRYAEPGEFTRRAFMN 188
Query: 208 NKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSE 267
++L+L Q EALGD + A+TE QR+ A+ L + Y +WRQ +L + +EA IDFSE
Sbjct: 189 DRLELPQIEALGDTLAADTEQQRRLAVRGASDALSKRYEKWRQQLLYARGELEALIDFSE 248
Query: 268 DEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIK 309
D+ + D+++ +V +QV L I HI+ ++K G +RSGIK
Sbjct: 249 DQYFDESSDDLVLSVSTQVRALSRQIALHIQNASK-GELMRSGIK 292
Score = 214 (80.4 bits), Expect = 9.3e-23, Sum P(2) = 9.3e-23
Identities = 48/115 (41%), Positives = 77/115 (66%)
Query: 317 VEAYIDFSEDEIIE---DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGE 373
+EA IDFSED+ + D+++ +V +QV L I HI+ ++K G +RSGIK ++G
Sbjct: 240 LEALIDFSEDQYFDESSDDLVLSVSTQVRALSRQIALHIQNASK-GELMRSGIKVALLGA 298
Query: 374 PNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428
PN GKSSL+N + ++ +IV++ GTTRD+++ +D+GG+ L D AG+R+ S
Sbjct: 299 PNAGKSSLLNRIVGREAAIVSTEEGTTRDIVDVGIDLGGWYCKLGDMAGIRSEPS 353
Score = 123 (48.4 bits), Expect = 9.3e-23, Sum P(2) = 9.3e-23
Identities = 38/118 (32%), Positives = 60/118 (50%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKV-- 85
+TI+ALS+ G+ ++V+RVSGP ++ +++ C P +P+PR A++R I DP S
Sbjct: 61 STIYALSTAPGRAAIAVVRVSGPACVSIYQAL-C-PKAPLPRPRVAAVRTIYDPASDEPC 118
Query: 86 ----VLDEG-LCLWFPRHGKC-GVSVIRV---SGPDTLNALKSMACYPDQKVSKPRYA 134
+LD G L L+ P G V+ GP + ++ S K RYA
Sbjct: 119 GQADILDAGALVLYMPGPKTATGEDVLEFHLHGGPAIVKSVLSAISKTSGKEHSVRYA 176
>TIGR_CMR|NSE_0717 [details] [associations]
symbol:NSE_0717 "tRNA modification GTPase TrmE"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] HAMAP:MF_00379 InterPro:IPR003593 InterPro:IPR004520
InterPro:IPR005225 InterPro:IPR006073 Pfam:PF01926 SMART:SM00382
GO:GO:0005525 TIGRFAMs:TIGR00231 GO:GO:0005737 GO:GO:0046872
GO:GO:0003924 GO:GO:0006400 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0486 HOGENOM:HOG000200714 KO:K03650 InterPro:IPR018948
InterPro:IPR025867 Pfam:PF12631 Pfam:PF10396 TIGRFAMs:TIGR00450
RefSeq:YP_506593.1 ProteinModelPortal:Q2GD53 STRING:Q2GD53
GeneID:3931628 KEGG:nse:NSE_0717 PATRIC:22681449 OMA:IEAHIIT
ProtClustDB:CLSK2528116 BioCyc:NSEN222891:GHFU-729-MONOMER
Uniprot:Q2GD53
Length = 550
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 85/214 (39%), Positives = 130/214 (60%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+V R+SGPD L AL+ + D K +PR+ + D ++++DE L ++F
Sbjct: 12 GKSGVAVFRISGPDALRALELLGL--DIKQPRPRFVYFARLFD--EQLLIDEVLVVYFAS 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED E HGSIAV+ I L+ L +PAEPGEF++RA NN++DLT+ E +
Sbjct: 68 PASFTGEDVVELHSHGSIAVLRYISEKLSTL--FKPAEPGEFTRRAVLNNRMDLTKAEGI 125
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
D+I +ET+ Q ++A + G L + Y+ R I++ L+ +EAYIDF ++EI E +L
Sbjct: 126 IDIINSETQEQLKQASRHLSGKLAEEYNSLRDKIIKVLSYLEAYIDFPDEEIPE-TVLAE 184
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
++ +V + I +++ K G +IR G VI
Sbjct: 185 IQQSIVAIQCDISRYLA-DGKVGEKIREGFSVVI 217
Score = 293 (108.2 bits), Expect = 1.7e-33, Sum P(2) = 1.7e-33
Identities = 67/164 (40%), Positives = 99/164 (60%)
Query: 273 DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI-CLASVEAYIDFSEDEIIED 331
+ I++ + S+ + +H LS K S +I L+ +EAYIDF ++EI E
Sbjct: 123 EGIIDIINSETQEQLKQASRH--LSGKLAEEYNSLRDKIIKVLSYLEAYIDFPDEEIPE- 179
Query: 332 NILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQIS 391
+L ++ +V + I +++ K G +IR G VIVG+PNVGKS+L N+L ++ ++
Sbjct: 180 TVLAEIQQSIVAIQCDISRYLA-DGKVGEKIREGFSVVIVGKPNVGKSTLFNYLAKRDLA 238
Query: 392 IVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
IVT IPGTTRD++E LD GYPVIL DTAG++ T D IE G
Sbjct: 239 IVTDIPGTTRDILEVRLDCHGYPVILSDTAGIQETC-DAIEKMG 281
Score = 129 (50.5 bits), Expect = 1.7e-33, Sum P(2) = 1.7e-33
Identities = 34/103 (33%), Positives = 57/103 (55%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI+ALS+ GK GV+V R+SGPD L AL+ + D K P+PR+ + D ++++
Sbjct: 2 STIYALSTVFGKSGVAVFRISGPDALRALELLGL--DIKQPRPRFVYFARLFD--EQLLI 57
Query: 88 DEGLCLWFPRHGK-CGVSVIRVSGPDTLNALKSMACYPDQKVS 129
DE L ++F G V+ + ++ L+ Y +K+S
Sbjct: 58 DEVLVVYFASPASFTGEDVVELHSHGSIAVLR----YISEKLS 96
>TIGR_CMR|SPO_3895 [details] [associations]
symbol:SPO_3895 "tRNA modification GTPase TrmE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] HAMAP:MF_00379 InterPro:IPR003593 InterPro:IPR004520
InterPro:IPR005225 InterPro:IPR006073 Pfam:PF01926 PRINTS:PR00326
SMART:SM00382 GO:GO:0005525 TIGRFAMs:TIGR00231 GO:GO:0005737
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0046872 GO:GO:0003924
GO:GO:0006400 HSSP:Q9X1F8 eggNOG:COG0486 HOGENOM:HOG000200714
KO:K03650 InterPro:IPR018948 InterPro:IPR025867 Pfam:PF12631
Pfam:PF10396 OMA:PGEFSEQ ProtClustDB:PRK05291 RefSeq:YP_169083.1
ProteinModelPortal:Q5LLM7 GeneID:3196284 KEGG:sil:SPO3895
PATRIC:23381297 Uniprot:Q5LLM7
Length = 428
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 90/214 (42%), Positives = 124/214 (57%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK GV+VIR+SGP + +A PD R S+R + D LD+G+ L F
Sbjct: 12 GKAGVAVIRLSGPRAYHTACLLAG-PDLP---SRGLSVRQLKDSQG-ARLDDGVVLTFAA 66
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P SFTGED EFQ+HGS+A A+L L L GLR AEPGEF++RA N K+ L Q E L
Sbjct: 67 PASFTGEDVAEFQIHGSLATTEAVLRCLGDLDGLRLAEPGEFTRRALENGKMSLPQVEGL 126
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI AETE QR++A + G L QL WR ++ + A +EA IDF+++E+ D +
Sbjct: 127 ADLIDAETEAQRKQAQAVLNGALGQLAEGWRAKLIRAAALLEAVIDFADEEVPTD-VSPE 185
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
VR+ + ++ +E I + RIR+G + I
Sbjct: 186 VRALLAEVRADLEHEIA-GVRIAERIRTGFEVAI 218
Score = 246 (91.7 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 53/132 (40%), Positives = 82/132 (62%)
Query: 309 KSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKS 368
K + A +EA IDF+++E+ D + VR+ + ++ +E I + RIR+G +
Sbjct: 159 KLIRAAALLEAVIDFADEEVPTD-VSPEVRALLAEVRADLEHEIA-GVRIAERIRTGFEV 216
Query: 369 VIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428
I+G PN GKS+L+N L ++ ++ + + GTTRDVIE +D+GG PV LLDTAGLR T
Sbjct: 217 AIIGPPNAGKSTLLNMLAGREAALTSEVAGTTRDVIEVRMDLGGLPVTLLDTAGLRET-G 275
Query: 429 DIIETEGNLLEK 440
D++E G L +
Sbjct: 276 DLVEGMGIALAR 287
Score = 94 (38.1 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 28/68 (41%), Positives = 40/68 (58%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFAL++ GK GV+VIR+SGP + +A PD +P R S+R + D L
Sbjct: 2 DTIFALATAQGKAGVAVIRLSGPRAYHTACLLAG-PD--LPS-RGLSVRQLKDSQG-ARL 56
Query: 88 DEGLCLWF 95
D+G+ L F
Sbjct: 57 DDGVVLTF 64
>SGD|S000004625 [details] [associations]
symbol:MSS1 "Mitochondrial protein" species:4932
"Saccharomyces cerevisiae" [GO:0005525 "GTP binding"
evidence=IEA;ISS] [GO:0005739 "mitochondrion" evidence=IEA;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0005743 "mitochondrial inner
membrane" evidence=IDA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=IEA] [GO:0007264 "small
GTPase mediated signal transduction" evidence=IEA] [GO:0070899
"mitochondrial tRNA wobble uridine modification" evidence=IMP]
[GO:0006184 "GTP catabolic process" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR001806 InterPro:IPR004520
InterPro:IPR005225 InterPro:IPR006073 Pfam:PF01926 PRINTS:PR00449
SGD:S000004625 GO:GO:0005525 TIGRFAMs:TIGR00231 GO:GO:0007264
GO:GO:0005743 GO:GO:0003924 EMBL:BK006946 EMBL:Z49211
eggNOG:COG0486 HOGENOM:HOG000200714 KO:K03650 InterPro:IPR018948
InterPro:IPR025867 Pfam:PF12631 Pfam:PF10396 TIGRFAMs:TIGR00450
OMA:IRISGTH GeneTree:ENSGT00390000016851 OrthoDB:EOG4B2X62
EMBL:X69481 EMBL:DQ834923 PIR:S54025 RefSeq:NP_013736.1
ProteinModelPortal:P32559 SMR:P32559 DIP:DIP-5882N IntAct:P32559
MINT:MINT-2788166 STRING:P32559 PaxDb:P32559 EnsemblFungi:YMR023C
GeneID:855037 KEGG:sce:YMR023C CYGD:YMR023c NextBio:978251
Genevestigator:P32559 GermOnline:YMR023C GO:GO:0070899
Uniprot:P32559
Length = 526
Score = 355 (130.0 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 101/315 (32%), Positives = 160/315 (50%)
Query: 96 PRHGKCGVSVIRVSGPDT---LNALKSMACYPD------QKVSKPRYASLRNIVDPVSEV 146
P + +++IR+SG N L + P + + P S++ S++
Sbjct: 45 PANQTSAIAIIRISGTHAKYIYNRLVDSSTVPPIRKAILRNIYSPSSCSVKPHDQKESKI 104
Query: 147 VLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL----PG--LRPAEPGEF 200
+LD L L+F P SFTGED E VHG AV+N+IL A+ L G +R A PG+F
Sbjct: 105 LLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGKDIRFALPGDF 164
Query: 201 SKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVE 260
S+RAF N K DLTQ E + DLI +ETE QR+ AL G+ K L+ WR+ I+E++A +
Sbjct: 165 SRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRETIIENMAQLT 224
Query: 261 AYIDFSEDEIIE----DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA- 315
A IDF++D E D I + V ++ L I ++ K + +++GIK V+ A
Sbjct: 225 AIIDFADDNSQEIQNTDEIFHNVEKNIICLRDQIVTFMQKVEKSTI-LQNGIKLVLLGAP 283
Query: 316 --SVEAYID-FSEDEI-IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIV 371
+ ++ + D+I I +I T R + + + + + G+R +S K ++
Sbjct: 284 NVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIREKSSDKIEML 343
Query: 372 GEPNVGKSSLMNFLC 386
G K S+ + LC
Sbjct: 344 GIDRAKKKSVQSDLC 358
Score = 239 (89.2 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 54/126 (42%), Positives = 78/126 (61%)
Query: 314 LASVEAYIDFSEDEIIE----DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSV 369
+A + A IDF++D E D I + V ++ L I ++ K + +++GIK V
Sbjct: 220 MAQLTAIIDFADDNSQEIQNTDEIFHNVEKNIICLRDQIVTFMQKVEKSTI-LQNGIKLV 278
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
++G PNVGKSSL+N L ISIV+ IPGTTRD I+ +++ GY VI+ DTAG+R +SD
Sbjct: 279 LLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIREKSSD 338
Query: 430 IIETEG 435
IE G
Sbjct: 339 KIEMLG 344
Score = 69 (29.3 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 33/119 (27%), Positives = 52/119 (43%)
Query: 29 TIFALSS-GHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS---- 83
TI+ALS+ + +++IR+SG + VP R A LRNI P S
Sbjct: 38 TIYALSTPANQTSAIAIIRISGTHAKYIYNRLV--DSSTVPPIRKAILRNIYSPSSCSVK 95
Query: 84 -------KVVLDEGLCLWFPR-HGKCGVSVIRV---SGPDTLNA-LKSMACYPDQKVSK 130
K++LD L L+F + G V+ + G +N+ LK++ D+ K
Sbjct: 96 PHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGK 154
>TIGR_CMR|CBU_1922 [details] [associations]
symbol:CBU_1922 "tRNA modification GTPase TrmE"
species:227377 "Coxiella burnetii RSA 493" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] [GO:0009636 "response to toxic substance"
evidence=ISS] HAMAP:MF_00379 InterPro:IPR004520 InterPro:IPR005225
InterPro:IPR006073 Pfam:PF01926 PRINTS:PR00326 GO:GO:0005525
TIGRFAMs:TIGR00231 GO:GO:0005737 GO:GO:0046872 GO:GO:0003924
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0006400
eggNOG:COG0486 HOGENOM:HOG000200714 KO:K03650 InterPro:IPR018948
InterPro:IPR025867 Pfam:PF12631 Pfam:PF10396 TIGRFAMs:TIGR00450
OMA:PGEFSEQ ProtClustDB:PRK05291 EMBL:Y10436 RefSeq:NP_820899.1
ProteinModelPortal:P94612 GeneID:1209835 KEGG:cbu:CBU_1922
PATRIC:17932577 BioCyc:CBUR227377:GJ7S-1896-MONOMER Uniprot:P94612
Length = 452
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 86/216 (39%), Positives = 123/216 (56%)
Query: 99 GKCGVSVIRVSGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ G+ V+RVSG T A K + C P KPRYA+ D S V+DEG+ L+FP
Sbjct: 17 GRGGIGVVRVSGEKTKAIAQKILGCVP-----KPRYATFVKFRDSGS--VIDEGIALYFP 69
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
KPNSFTGED E HG V++ +L + K G R A PGEFS+RAF NNK+DL Q EA
Sbjct: 70 KPNSFTGEDVLELHGHGGPVVMDRLLNTVLKA-GARQARPGEFSERAFLNNKIDLAQAEA 128
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN 277
+ DLI A +E + A+ ++G + + +++ +EA IDF E+EI D + +
Sbjct: 129 VADLINASSEQAARSAMRSLQGEFSKRIHQLVDALIQLRMYIEASIDFPEEEI--DFLAD 186
Query: 278 T-VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
++ + L +++ IE + K G +R GI VI
Sbjct: 187 ERIKETLENLTHQVQE-IEKTAKQGALLREGITVVI 221
Score = 252 (93.8 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 67/175 (38%), Positives = 102/175 (58%)
Query: 263 IDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLAS-VEAYI 321
ID ++ E + D ++N Q + S + L + RI + ++I L +EA I
Sbjct: 121 IDLAQAEAVAD-LINASSEQAAR---SAMR--SLQGEFSKRIHQLVDALIQLRMYIEASI 174
Query: 322 DFSEDEIIEDNILNT-VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSS 380
DF E+EI D + + ++ + L +++ IE + K G +R GI VI GEPNVGKSS
Sbjct: 175 DFPEEEI--DFLADERIKETLENLTHQVQE-IEKTAKQGALLREGITVVIAGEPNVGKSS 231
Query: 381 LMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
L+N L ++ +IVT I GTTRD+I + + I G P+ ++DTAGLR T D++E EG
Sbjct: 232 LLNLLSGQETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGLRLT-EDVVEKEG 285
Score = 120 (47.3 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 43/131 (32%), Positives = 64/131 (48%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLN-ALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
TI A ++ G+ G+ V+RVSG T A K + C VPKPRYA+ D S V+
Sbjct: 8 TIAAQATPSGRGGIGVVRVSGEKTKAIAQKILGC-----VPKPRYATFVKFRDSGS--VI 60
Query: 88 DEGLCLWFPRHGK-CGVSVIRV---SGPDTLNALKSMACYPDQKVSKP----RYASLRNI 139
DEG+ L+FP+ G V+ + GP ++ L + + ++P A L N
Sbjct: 61 DEGIALYFPKPNSFTGEDVLELHGHGGPVVMDRLLNTVLKAGARQARPGEFSERAFLNNK 120
Query: 140 VDPV-SEVVLD 149
+D +E V D
Sbjct: 121 IDLAQAEAVAD 131
>TIGR_CMR|CPS_5049 [details] [associations]
symbol:CPS_5049 "tRNA modification GTPase TrmE"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] HAMAP:MF_00379 InterPro:IPR004520 InterPro:IPR005225
InterPro:IPR006073 Pfam:PF01926 GO:GO:0005525 TIGRFAMs:TIGR00231
GO:GO:0005737 GO:GO:0046872 GO:GO:0003924 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0006400 eggNOG:COG0486
HOGENOM:HOG000200714 KO:K03650 InterPro:IPR018948
InterPro:IPR025867 Pfam:PF12631 Pfam:PF10396 TIGRFAMs:TIGR00450
HSSP:Q9WYA4 OMA:PGEFSEQ ProtClustDB:PRK05291 RefSeq:YP_271687.1
ProteinModelPortal:Q47U36 SMR:Q47U36 STRING:Q47U36 GeneID:3518638
KEGG:cps:CPS_5049 PATRIC:21472877
BioCyc:CPSY167879:GI48-5049-MONOMER Uniprot:Q47U36
Length = 471
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 81/217 (37%), Positives = 122/217 (56%)
Query: 99 GKCGVSVIRVSGPDTLNALKS-MACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFP 157
G+ GV +IRVSGP+ N ++ + P+ V K Y + VLD+G+ L+F
Sbjct: 18 GRGGVGIIRVSGPEAKNVAQAILGKLPE--VRKAEYLPFLDCTSTDKTQVLDQGIALYFK 75
Query: 158 KPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEA 217
PNSFTGED EFQ HG +++ +L + P + A+PGEFS++AF N+KLDLTQ EA
Sbjct: 76 APNSFTGEDVIEFQGHGGPVILDMLLKVILAQPKVIMAKPGEFSEQAFLNDKLDLTQAEA 135
Query: 218 LGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEI--IEDNI 275
+ DLI + +E + ALH ++G+ +L +E + I+ VEA IDF E+EI + D
Sbjct: 136 IADLINSSSEQAARSALHSLQGDFSKLVNEMVESIIHLRMYVEAAIDFPEEEIDFLADKK 195
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
+ T ++ + K + G IR G++ VI
Sbjct: 196 IVTDLKAIISRVEDVRKQAQQ----GSIIREGMRVVI 228
Score = 225 (84.3 bits), Expect = 4.6e-22, Sum P(2) = 4.6e-22
Identities = 65/178 (36%), Positives = 97/178 (54%)
Query: 263 IDFSEDEIIEDNILNTVRSQVVQ--LHGSIEKHIELSNKCGVRIRSGIKSVICLAS-VEA 319
+D ++ E I D ++N+ Q + LH +L N+ ++S+I L VEA
Sbjct: 128 LDLTQAEAIAD-LINSSSEQAARSALHSLQGDFSKLVNEM-------VESIIHLRMYVEA 179
Query: 320 YIDFSEDEI--IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVG 377
IDF E+EI + D + T ++ + K + G IR G++ VI G PN G
Sbjct: 180 AIDFPEEEIDFLADKKIVTDLKAIISRVEDVRKQAQQ----GSIIREGMRVVIAGRPNAG 235
Query: 378 KSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
KSSL+N L KQ +IVT I GTTRDV+ + + I G P+ ++DTAGLR + D++E G
Sbjct: 236 KSSLLNALSGKQTAIVTDIAGTTRDVLAEQIHIDGMPLHIIDTAGLRDS-DDVVEKIG 292
Score = 99 (39.9 bits), Expect = 4.6e-22, Sum P(2) = 4.6e-22
Identities = 37/111 (33%), Positives = 55/111 (49%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVS--KV- 85
TI A ++ G+ GV +IRVSGP+ N +++ K+P+ R A +D S K
Sbjct: 9 TIAAQATAPGRGGVGIIRVSGPEAKNVAQAIL----GKLPEVRKAEYLPFLDCTSTDKTQ 64
Query: 86 VLDEGLCLWFPRHGK-CGVSVIRVSG---PDTLNAL-KSMACYPDQKVSKP 131
VLD+G+ L+F G VI G P L+ L K + P ++KP
Sbjct: 65 VLDQGIALYFKAPNSFTGEDVIEFQGHGGPVILDMLLKVILAQPKVIMAKP 115
>CGD|CAL0004408 [details] [associations]
symbol:orf19.2042 species:5476 "Candida albicans" [GO:0005743
"mitochondrial inner membrane" evidence=IEA] [GO:1900524 "positive
regulation of flocculation via cell wall protein-carbohydrate
interaction by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0070899 "mitochondrial
tRNA wobble uridine modification" evidence=IEA] HAMAP:MF_00379
InterPro:IPR004520 InterPro:IPR005225 InterPro:IPR006073
Pfam:PF01926 CGD:CAL0004408 GO:GO:0005525 TIGRFAMs:TIGR00231
GO:GO:0003924 GO:GO:0005622 GO:GO:0006400 EMBL:AACQ01000031
EMBL:AACQ01000030 eggNOG:COG0486 KO:K03650 InterPro:IPR018948
InterPro:IPR025867 Pfam:PF12631 Pfam:PF10396 TIGRFAMs:TIGR00450
RefSeq:XP_719491.1 RefSeq:XP_719616.1 ProteinModelPortal:Q5AD25
STRING:Q5AD25 GeneID:3638773 GeneID:3638809 KEGG:cal:CaO19.2042
KEGG:cal:CaO19.9590 Uniprot:Q5AD25
Length = 529
Score = 339 (124.4 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 75/211 (35%), Positives = 118/211 (55%)
Query: 97 RHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPV-----SEVVLDEG 151
+ GK ++V+R+SGP + + K K R AS+R + P V LDE
Sbjct: 59 KFGKSAIAVVRISGPQSKYIYHKLT--NSTKPPKNRIASVRKLYSPEPHSNKKSVFLDEA 116
Query: 152 LCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKL--PG----LRPAEPGEFSKRAF 205
L L+ P P ++TGED E +HG +A+I ++L ++ KL P +R A+ GEFSK+AF
Sbjct: 117 LTLFLPGPKTYTGEDLLELHLHGGVAIIKSVLQSIKKLHDPNNGVIIRQADRGEFSKQAF 176
Query: 206 FNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDF 265
+N +LDLT+ E + D+I AETE QR +L G K + +WR I+ +A++ IDF
Sbjct: 177 YNGRLDLTELEGINDMINAETESQRLASLASSSGQTKIEFMKWRNEIINQMANLTMIIDF 236
Query: 266 SEDEIIE--DNILNTVRSQVVQLHGSIEKHI 294
ED IE D ++ V+ + ++ I+ ++
Sbjct: 237 GEDHDIEETDRMIRDVKENIAKIESEIKAYL 267
Score = 229 (85.7 bits), Expect = 3.2e-16, P = 3.2e-16
Identities = 70/230 (30%), Positives = 118/230 (51%)
Query: 211 DLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEI 270
DL + G + ++ LQ K LH + ++ + + A +D +E E
Sbjct: 131 DLLELHLHGGVAIIKSVLQSIKKLHDPNNGVIIRQADRGEFSKQ--AFYNGRLDLTELEG 188
Query: 271 IEDNILNTVRSQ-VVQLHGSI-EKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEI 328
I D I SQ + L S + IE ++ R+ I + +A++ IDF ED
Sbjct: 189 INDMINAETESQRLASLASSSGQTKIEF-----MKWRNEI--INQMANLTMIIDFGEDHD 241
Query: 329 IE--DNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLC 386
IE D ++ V+ + ++ I+ ++ + + +GI+ ++G PN GKSS++N L
Sbjct: 242 IEETDRMIRDVKENIAKIESEIKAYLSKVKSSQILL-NGIQLALLGPPNAGKSSILNILA 300
Query: 387 QKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT-TTSDIIETEG 435
K +IV+ I GTTRD+++ L+IGGY V++ DTAG+R+ +D IE EG
Sbjct: 301 NKDAAIVSEIAGTTRDILDIPLEIGGYKVVVGDTAGIRSFEEADSIEQEG 350
Score = 117 (46.2 bits), Expect = 0.00090, P = 0.00090
Identities = 62/232 (26%), Positives = 96/232 (41%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPV--- 82
+K T+FALS+ GK ++V+R+SGP + + K PK R AS+R + P
Sbjct: 49 LKPTVFALSTKFGKSAIAVVRISGPQSKYIYHKLT--NSTKPPKNRIASVRKLYSPEPHS 106
Query: 83 --SKVVLDEGLCLWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIV 140
V LDE L L+ P G +G D L + + + K S++ +
Sbjct: 107 NKKSVFLDEALTLFLP-----GPKTY--TGEDLLE----LHLHGGVAIIKSVLQSIKKLH 155
Query: 141 DPVSEVVLDEGLCLWFPKPNSFTGE-DCCEFQVHGSIAVINAILGA--LTKLPGLRPAEP 197
DP + V++ + F K + G D E + G +INA + L L
Sbjct: 156 DPNNGVIIRQADRGEFSKQAFYNGRLDLTELE--GINDMINAETESQRLASLASSSGQTK 213
Query: 198 GEFSK--RAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSE 247
EF K N +LT G+ E E R + +K N+ ++ SE
Sbjct: 214 IEFMKWRNEIINQMANLTMIIDFGEDHDIE-ETDRM--IRDVKENIAKIESE 262
>UNIPROTKB|P25522 [details] [associations]
symbol:mnmE "GTP-binding protein with a role in
modification of tRNA" species:83333 "Escherichia coli K-12"
[GO:0006184 "GTP catabolic process" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009268 "response to pH" evidence=IMP] [GO:0030488 "tRNA
methylation" evidence=IMP] [GO:0003924 "GTPase activity"
evidence=IEA;IDA] [GO:0005525 "GTP binding" evidence=IEA;IDA]
[GO:0006805 "xenobiotic metabolic process" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] HAMAP:MF_00379
InterPro:IPR004520 InterPro:IPR005225 InterPro:IPR006073
Pfam:PF01926 GO:GO:0005525 TIGRFAMs:TIGR00231 GO:GO:0005737
GO:GO:0016020 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0003924 GO:GO:0009268
GO:GO:0006805 EMBL:L10328 eggNOG:COG0486 HOGENOM:HOG000200714
KO:K03650 InterPro:IPR018948 InterPro:IPR025867 Pfam:PF12631
Pfam:PF10396 TIGRFAMs:TIGR00450 OMA:PGEFSEQ ProtClustDB:PRK05291
EMBL:S57109 PIR:A38160 PIR:C65173 RefSeq:NP_418162.1
RefSeq:YP_491728.1 PDB:1RFL PDB:2GJ8 PDB:2GJ9 PDB:2GJA PDBsum:1RFL
PDBsum:2GJ8 PDBsum:2GJ9 PDBsum:2GJA ProteinModelPortal:P25522
SMR:P25522 DIP:DIP-11033N IntAct:P25522 PRIDE:P25522
EnsemblBacteria:EBESCT00000002643 EnsemblBacteria:EBESCT00000017912
GeneID:12932528 GeneID:948222 KEGG:ecj:Y75_p3466 KEGG:eco:b3706
PATRIC:32122909 EchoBASE:EB0990 EcoGene:EG10997
BioCyc:EcoCyc:EG10997-MONOMER BioCyc:ECOL316407:JW3684-MONOMER
EvolutionaryTrace:P25522 Genevestigator:P25522 GO:GO:0030488
Uniprot:P25522
Length = 454
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 79/215 (36%), Positives = 120/215 (55%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV ++R+SG +++ K+ KPRYA D V LD+G+ LWFP
Sbjct: 15 GRGGVGILRISGFKAREVAETVL----GKLPKPRYADYLPFKDADGSV-LDQGIALWFPG 69
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG +++ +L + +PGLR A PGEFS+RAF N+KLDL Q EA+
Sbjct: 70 PNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAI 129
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILN- 277
DLI A +E + AL+ ++G + + + VEA IDF ++EI D + +
Sbjct: 130 ADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEI--DFLSDG 187
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
+ +Q+ + ++ + + G +R G+K VI
Sbjct: 188 KIEAQLNDVIADLDA-VRAEARQGSLLREGMKVVI 221
Score = 214 (80.4 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 50/120 (41%), Positives = 75/120 (62%)
Query: 317 VEAYIDFSEDEIIEDNILN-TVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPN 375
VEA IDF ++EI D + + + +Q+ + ++ + + G +R G+K VI G PN
Sbjct: 170 VEAAIDFPDEEI--DFLSDGKIEAQLNDVIADLDA-VRAEARQGSLLREGMKVVIAGRPN 226
Query: 376 VGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GKSSL+N L ++ +IVT I GTTRDV+ +H+ I G P+ ++DTAGLR SD +E G
Sbjct: 227 AGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA-SDEVERIG 285
Score = 128 (50.1 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 58/245 (23%), Positives = 105/245 (42%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV ++R+SG +++ K+PKPRYA D V L
Sbjct: 5 DTIVAQATPPGRGGVGILRISGFKAREVAETVL----GKLPKPRYADYLPFKDADGSV-L 59
Query: 88 DEGLCLWFPRHGK-CGVSVIRVSG---PDTLNAL-KSMACYPDQKVSKPRYASLRNIVDP 142
D+G+ LWFP G V+ + G P L+ L K + P ++++P S R ++
Sbjct: 60 DQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLND 119
Query: 143 VSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAV-INAILGALTKLPGLRPAEPGEFS 201
++ E + + + G+ + +N ++ ALT L A
Sbjct: 120 KLDLAQAEAIADLIDASSEQAARSALN-SLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178
Query: 202 KRAFF--NNKLDLTQTEALGDLIQAETELQRQKALHQ-MKGNLKQLYSEWRQLILESLAS 258
+ F + K++ + + DL E ++ L + MK + + + +L +LA
Sbjct: 179 EEIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAG 238
Query: 259 VEAYI 263
EA I
Sbjct: 239 REAAI 243
>UNIPROTKB|Q9KVY5 [details] [associations]
symbol:mnmE "tRNA modification GTPase MnmE" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009636 "response to toxic
substance" evidence=ISS] HAMAP:MF_00379 InterPro:IPR004520
InterPro:IPR005225 InterPro:IPR006073 Pfam:PF01926 GO:GO:0005525
TIGRFAMs:TIGR00231 GO:GO:0005737 GO:GO:0046872 GO:GO:0009636
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003924 GO:GO:0006400
eggNOG:COG0486 KO:K03650 InterPro:IPR018948 InterPro:IPR025867
Pfam:PF12631 Pfam:PF10396 TIGRFAMs:TIGR00450 OMA:PGEFSEQ
ProtClustDB:PRK05291 PIR:D82375 RefSeq:NP_062587.1
ProteinModelPortal:Q9KVY5 SMR:Q9KVY5 DNASU:2614455 GeneID:2614455
KEGG:vch:VC0003 PATRIC:20079054 Uniprot:Q9KVY5
Length = 453
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 89/272 (32%), Positives = 146/272 (53%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP + +++ + +PRYA D + LD+G+ L+FP
Sbjct: 14 GRGGVGIIRVSGPLAAHVAQTVT----GRTLRPRYAEYLPFTDEDGQQ-LDQGIALFFPN 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ ++ + ++ G+RPA PGEFS+RAF N+K+DLTQ EA+
Sbjct: 69 PHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDLTQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEI--IEDNIL 276
DLI A +E + AL ++G + + ++ VEA IDF E+EI + D +
Sbjct: 129 ADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEEIDFLADGKV 188
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC------LASVEAYIDFSEDEIIE 330
+ ++ ++ + +N+ G +R G+K VI +S+ + E I+
Sbjct: 189 SADLQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVT 244
Query: 331 DNILNTVRSQVVQLHGSIE-KHIELSNKCGVR 361
D I T R V++ H I+ + + + G+R
Sbjct: 245 D-IAGTTRD-VLREHIHIDGMPLHIIDTAGLR 274
Score = 232 (86.7 bits), Expect = 3.2e-23, Sum P(2) = 3.2e-23
Identities = 66/181 (36%), Positives = 100/181 (55%)
Query: 264 DFSEDEIIEDNILNTVRSQVVQL-HGSIEKHIE-----LSNKCGVRIRSGIKSVICLAS- 316
+FSE + D + T + L S E+ + L + RI + ++S+I L
Sbjct: 109 EFSERAFLNDKMDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIY 168
Query: 317 VEAYIDFSEDEI--IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEP 374
VEA IDF E+EI + D ++ ++ ++ + +N+ G +R G+K VI G P
Sbjct: 169 VEAAIDFPEEEIDFLADGKVSADLQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRP 224
Query: 375 NVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETE 434
N GKSSL+N L K+ +IVT I GTTRDV+ +H+ I G P+ ++DTAGLR SD +E
Sbjct: 225 NAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDA-SDAVEKI 283
Query: 435 G 435
G
Sbjct: 284 G 284
Score = 101 (40.6 bits), Expect = 3.2e-23, Sum P(2) = 3.2e-23
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + +++ + +PRYA D + L
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVT----GRTLRPRYAEYLPFTDEDGQQ-L 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALFFPNPHSFTGEDVLELQG 82
>TIGR_CMR|VC_0003 [details] [associations]
symbol:VC_0003 "thiophene and furan oxidation protein ThdF"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009636 "response to toxic
substance" evidence=ISS] HAMAP:MF_00379 InterPro:IPR004520
InterPro:IPR005225 InterPro:IPR006073 Pfam:PF01926 GO:GO:0005525
TIGRFAMs:TIGR00231 GO:GO:0005737 GO:GO:0046872 GO:GO:0009636
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003924 GO:GO:0006400
eggNOG:COG0486 KO:K03650 InterPro:IPR018948 InterPro:IPR025867
Pfam:PF12631 Pfam:PF10396 TIGRFAMs:TIGR00450 OMA:PGEFSEQ
ProtClustDB:PRK05291 PIR:D82375 RefSeq:NP_062587.1
ProteinModelPortal:Q9KVY5 SMR:Q9KVY5 DNASU:2614455 GeneID:2614455
KEGG:vch:VC0003 PATRIC:20079054 Uniprot:Q9KVY5
Length = 453
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 89/272 (32%), Positives = 146/272 (53%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IRVSGP + +++ + +PRYA D + LD+G+ L+FP
Sbjct: 14 GRGGVGIIRVSGPLAAHVAQTVT----GRTLRPRYAEYLPFTDEDGQQ-LDQGIALFFPN 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P+SFTGED E Q HG V++ ++ + ++ G+RPA PGEFS+RAF N+K+DLTQ EA+
Sbjct: 69 PHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDLTQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEI--IEDNIL 276
DLI A +E + AL ++G + + ++ VEA IDF E+EI + D +
Sbjct: 129 ADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEEIDFLADGKV 188
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIC------LASVEAYIDFSEDEIIE 330
+ ++ ++ + +N+ G +R G+K VI +S+ + E I+
Sbjct: 189 SADLQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVT 244
Query: 331 DNILNTVRSQVVQLHGSIE-KHIELSNKCGVR 361
D I T R V++ H I+ + + + G+R
Sbjct: 245 D-IAGTTRD-VLREHIHIDGMPLHIIDTAGLR 274
Score = 232 (86.7 bits), Expect = 3.2e-23, Sum P(2) = 3.2e-23
Identities = 66/181 (36%), Positives = 100/181 (55%)
Query: 264 DFSEDEIIEDNILNTVRSQVVQL-HGSIEKHIE-----LSNKCGVRIRSGIKSVICLAS- 316
+FSE + D + T + L S E+ + L + RI + ++S+I L
Sbjct: 109 EFSERAFLNDKMDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIY 168
Query: 317 VEAYIDFSEDEI--IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEP 374
VEA IDF E+EI + D ++ ++ ++ + +N+ G +R G+K VI G P
Sbjct: 169 VEAAIDFPEEEIDFLADGKVSADLQTIIDNLAAVRRE---ANQ-GAIMREGMKVVIAGRP 224
Query: 375 NVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETE 434
N GKSSL+N L K+ +IVT I GTTRDV+ +H+ I G P+ ++DTAGLR SD +E
Sbjct: 225 NAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDA-SDAVEKI 283
Query: 435 G 435
G
Sbjct: 284 G 284
Score = 101 (40.6 bits), Expect = 3.2e-23, Sum P(2) = 3.2e-23
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IRVSGP + +++ + +PRYA D + L
Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVT----GRTLRPRYAEYLPFTDEDGQQ-L 58
Query: 88 DEGLCLWFPR-HGKCGVSVIRVSG 110
D+G+ L+FP H G V+ + G
Sbjct: 59 DQGIALFFPNPHSFTGEDVLELQG 82
>TIGR_CMR|SO_0003 [details] [associations]
symbol:SO_0003 "tRNA modification GTPase TrmE"
species:211586 "Shewanella oneidensis MR-1" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0008175 "tRNA methyltransferase
activity" evidence=ISS] [GO:0009636 "response to toxic substance"
evidence=ISS] HAMAP:MF_00379 InterPro:IPR004520 InterPro:IPR005225
InterPro:IPR006073 Pfam:PF01926 GO:GO:0005525 TIGRFAMs:TIGR00231
GO:GO:0005737 GO:GO:0046872 GO:GO:0003924 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006400 eggNOG:COG0486
HOGENOM:HOG000200714 KO:K03650 InterPro:IPR018948
InterPro:IPR025867 Pfam:PF12631 Pfam:PF10396 TIGRFAMs:TIGR00450
ProtClustDB:PRK05291 RefSeq:NP_715645.2 ProteinModelPortal:Q8CX52
GeneID:1167901 KEGG:son:SO_0003 PATRIC:23519697 Uniprot:Q8CX52
Length = 453
Score = 315 (115.9 bits), Expect = 1.4e-27, P = 1.4e-27
Identities = 79/217 (36%), Positives = 120/217 (55%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ GV +IR+SG N ++ + + KPRYA +V+ D+G+ L+F
Sbjct: 14 GRGGVGIIRISGDKATNVAMAVLGH----LPKPRYADYCYFKSASGQVI-DQGIALFFKG 68
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
PNSFTGED E Q HG V++ ++ + ++ G+R A+PGEFS++AF N+KLDLTQ EA+
Sbjct: 69 PNSFTGEDVLELQGHGGQIVLDMLIKRVLEVEGIRIAKPGEFSEQAFMNDKLDLTQAEAI 128
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEI--IEDN-I 275
DLI A +E + AL ++G + E + VEA IDF ++E+ + D I
Sbjct: 129 ADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTHLRLYVEAAIDFPDEEVDFLSDGKI 188
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
N + + +L ++ S K G IR G+K VI
Sbjct: 189 ANALYKIIDKLIA-----VQASAKQGSIIREGMKVVI 220
Score = 227 (85.0 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 55/122 (45%), Positives = 76/122 (62%)
Query: 317 VEAYIDFSEDEI--IEDN-ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGE 373
VEA IDF ++E+ + D I N + + +L ++ S K G IR G+K VI G
Sbjct: 169 VEAAIDFPDEEVDFLSDGKIANALYKIIDKLIA-----VQASAKQGSIIREGMKVVIAGR 223
Query: 374 PNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIET 433
PN GKSSL+N L K+ +IVT I GTTRDV+ +H+ + G P+ ++DTAGLR TT D +E
Sbjct: 224 PNAGKSSLLNALAGKESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTT-DTVEQ 282
Query: 434 EG 435
G
Sbjct: 283 IG 284
Score = 91 (37.1 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 26/84 (30%), Positives = 42/84 (50%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TI A ++ G+ GV +IR+SG N ++ + +PKPRYA S V+
Sbjct: 4 DTIVAQATAPGRGGVGIIRISGDKATNVAMAVLGH----LPKPRYADYCYFKS-ASGQVI 58
Query: 88 DEGLCLWFPRHGK-CGVSVIRVSG 110
D+G+ L+F G V+ + G
Sbjct: 59 DQGIALFFKGPNSFTGEDVLELQG 82
>TIGR_CMR|CHY_0006 [details] [associations]
symbol:CHY_0006 "tRNA modification GTPase TrmE"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] HAMAP:MF_00379 InterPro:IPR004520
InterPro:IPR005225 InterPro:IPR006073 Pfam:PF01926 GO:GO:0005525
TIGRFAMs:TIGR00231 GO:GO:0005737 GO:GO:0046872 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003924 GO:GO:0006400
eggNOG:COG0486 KO:K03650 InterPro:IPR018948 InterPro:IPR025867
Pfam:PF12631 Pfam:PF10396 TIGRFAMs:TIGR00450 HSSP:Q9WYA4
OMA:PGEFSEQ HOGENOM:HOG000200713 RefSeq:YP_358878.1
ProteinModelPortal:Q3AG56 STRING:Q3AG56 GeneID:3727714
KEGG:chy:CHY_0006 PATRIC:21273213 BioCyc:CHYD246194:GJCN-6-MONOMER
Uniprot:Q3AG56
Length = 461
Score = 315 (115.9 bits), Expect = 1.9e-27, P = 1.9e-27
Identities = 77/217 (35%), Positives = 121/217 (55%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQK-VSK-PRYA-SLRNIVDPVSEVVLDEGLCLW 155
G+ G+ ++RVSGP + A+K++ K +SK P + IVDP ++DE L
Sbjct: 14 GEGGIGIVRVSGPGAIEAVKNVFIPRQSKDLSKVPSFTLHYGKIVDPADGKIVDEVLVSV 73
Query: 156 FPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQT 215
P S+TGED E HG I + +L + K G+R AEPGEF+KRAF N ++DL+Q
Sbjct: 74 MRAPKSYTGEDVVEINCHGGIVAVEKVLELILK-QGIRLAEPGEFTKRAFLNGRIDLSQA 132
Query: 216 EALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNI 275
EA+ D+I+A+TE + A Q+ G L++ + RQ I+ LA +E ID+ E E ++
Sbjct: 133 EAVIDIIRAKTEASLKLAGRQLSGELREKINAVRQKIINILAFIEVSIDYPEYEF-DEVT 191
Query: 276 LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
T + ++ + + + S + G +R GI +VI
Sbjct: 192 PETALKNIDEIINDVRRLLS-SYERGRILREGITAVI 227
Score = 247 (92.0 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 70/188 (37%), Positives = 107/188 (56%)
Query: 257 ASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLAS 316
A + ID S+ E + D I+ ++L G + EL K +R I ++ LA
Sbjct: 121 AFLNGRIDLSQAEAVID-IIRAKTEASLKLAGR-QLSGELREKINA-VRQKIINI--LAF 175
Query: 317 VEAYIDFSEDEIIEDNIL-NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPN 375
+E ID+ E E D + T + ++ + + + S + G +R GI +VI G+PN
Sbjct: 176 IEVSIDYPEYEF--DEVTPETALKNIDEIINDVRRLLS-SYERGRILREGITAVIAGKPN 232
Query: 376 VGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
VGKSSL+N L +K+ +IVT IPGTTRDVIE +L++ G PV ++DTAG+R T D++E G
Sbjct: 233 VGKSSLLNALLRKKRAIVTDIPGTTRDVIEDYLNLKGIPVKIVDTAGIRET-EDLVEKLG 291
Query: 436 NLLEKNNQ 443
+EK +
Sbjct: 292 --VEKTRE 297
Score = 87 (35.7 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQK-VPK-PRYA-SLRNIVDPV 82
+++TI A+S+ G+ G+ ++RVSGP + A+K++ K + K P + IVDP
Sbjct: 2 MEDTIAAISTPLGEGGIGIVRVSGPGAIEAVKNVFIPRQSKDLSKVPSFTLHYGKIVDPA 61
Query: 83 SKVVLDEGL 91
++DE L
Sbjct: 62 DGKIVDEVL 70
>TIGR_CMR|BA_5734 [details] [associations]
symbol:BA_5734 "tRNA modification GTPase TrmE"
species:198094 "Bacillus anthracis str. Ames" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] HAMAP:MF_00379 InterPro:IPR004520 InterPro:IPR005225
InterPro:IPR006073 Pfam:PF01926 GO:GO:0005525 TIGRFAMs:TIGR00231
GO:GO:0005737 GO:GO:0046872 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003924 GO:GO:0006400
eggNOG:COG0486 KO:K03650 InterPro:IPR018948 InterPro:IPR025867
Pfam:PF12631 Pfam:PF10396 TIGRFAMs:TIGR00450 ProtClustDB:PRK05291
RefSeq:NP_847879.1 RefSeq:YP_031574.1 RefSeq:YP_052661.1
ProteinModelPortal:Q81JD9 DNASU:1085503
EnsemblBacteria:EBBACT00000010687 EnsemblBacteria:EBBACT00000014942
EnsemblBacteria:EBBACT00000021840 GeneID:1085503 GeneID:2820766
GeneID:2848296 KEGG:ban:BA_5734 KEGG:bar:GBAA_5734 KEGG:bat:BAS5337
HOGENOM:HOG000200713 OMA:IDFPEEV
BioCyc:BANT260799:GJAJ-5414-MONOMER
BioCyc:BANT261594:GJ7F-5590-MONOMER Uniprot:Q81JD9
Length = 458
Score = 307 (113.1 bits), Expect = 2.4e-27, Sum P(2) = 2.4e-27
Identities = 75/214 (35%), Positives = 117/214 (54%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
G+ ++++RVSG D + + + D +IVD + V++E +
Sbjct: 14 GEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSHTIHYGHIVDLDTNQVIEEVMVSIMRA 73
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P +FT E+ E HG + +N +L L G+R AEPGEF+KRAF N ++DL+Q EA+
Sbjct: 74 PRTFTRENIVEINCHGGLVSVNKVL-QLILAQGVRLAEPGEFTKRAFLNGRIDLSQAEAV 132
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI+A+T+ A++QM+G L +L RQ ILE+LA VE ID+ E + +E+ N
Sbjct: 133 MDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDYPEYDDVEEMTHNI 192
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVI 312
+ + + I K +E S K G +R GI + I
Sbjct: 193 LIEKATHVRAEIAKILETS-KQGKILREGIATAI 225
Score = 265 (98.3 bits), Expect = 9.7e-24, Sum P(3) = 9.7e-24
Identities = 72/180 (40%), Positives = 105/180 (58%)
Query: 257 ASVEAYIDFSEDEIIEDNI-LNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA 315
A + ID S+ E + D I T R+ V ++ +E LS G R+R I LA
Sbjct: 118 AFLNGRIDLSQAEAVMDLIRAKTDRAMNVAIN-QMEGR--LSKLIG-RLRQDILET--LA 171
Query: 316 SVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPN 375
VE ID+ E + +E+ N + + + I K +E S K G +R GI + I+G PN
Sbjct: 172 HVEVNIDYPEYDDVEEMTHNILIEKATHVRAEIAKILETS-KQGKILREGIATAIIGRPN 230
Query: 376 VGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
VGKSSL+N L Q++ +IVT I GTTRDVIE+++++ G P+ L+DTAG+R T D++E G
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRET-EDVVERIG 289
Score = 59 (25.8 bits), Expect = 9.7e-24, Sum P(3) = 9.7e-24
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPD-QKVPKPRYASLRNIVDPVSKVV 86
+TI A+S+ G+ ++++RVSG D + + + D +VP +IVD + V
Sbjct: 4 DTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPS-HTIHYGHIVDLDTNQV 62
Query: 87 LDE 89
++E
Sbjct: 63 IEE 65
Score = 39 (18.8 bits), Expect = 2.4e-27, Sum P(2) = 2.4e-27
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 302 VRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVR 361
+ + +G + + E ID E I + T+ S V + S +HI L + G
Sbjct: 348 IELAAGNRVITTSLIEEQGIDELEKAIADLFFEGTIDSADVT-YVSNARHIGLLTQAGKT 406
Query: 362 IRSGIKSVIVGEP 374
I I+++ G P
Sbjct: 407 IGDAIEAIENGVP 419
Score = 38 (18.4 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 421 AGLRTTTSDIIETEG-NLLEK 440
AG R T+ +IE +G + LEK
Sbjct: 352 AGNRVITTSLIEEQGIDELEK 372
>UNIPROTKB|E2RE04 [details] [associations]
symbol:GTPBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005525 "GTP binding" evidence=IEA]
InterPro:IPR005225 InterPro:IPR006073 Pfam:PF01926 GO:GO:0005525
TIGRFAMs:TIGR00231 InterPro:IPR025867 Pfam:PF12631 OMA:IRISGTH
GeneTree:ENSGT00390000016851 EMBL:AAEX03012297
Ensembl:ENSCAFT00000024419 Uniprot:E2RE04
Length = 399
Score = 290 (107.1 bits), Expect = 8.0e-25, P = 8.0e-25
Identities = 59/124 (47%), Positives = 83/124 (66%)
Query: 189 LPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEW 248
+PGLRPAE GEF++RAF + KL LT+ E L DLI AETE QR++AL Q+ G L L W
Sbjct: 39 VPGLRPAEAGEFTRRAFAHGKLSLTEVEGLADLIHAETEAQRRQALRQLDGELGHLCHGW 98
Query: 249 RQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGI 308
+ + ++LA VEAYIDF ED+ +E+ +L SQV +L ++ H+ + + G R+RSG
Sbjct: 99 AKTLTKALAHVEAYIDFGEDDNLEEGVLERANSQVRELELALSAHLRDARR-GQRLRSGA 157
Query: 309 KSVI 312
V+
Sbjct: 158 HIVV 161
Score = 285 (105.4 bits), Expect = 7.7e-24, P = 7.7e-24
Identities = 59/122 (48%), Positives = 81/122 (66%)
Query: 314 LASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGE 373
LA VEAYIDF ED+ +E+ +L SQV +L ++ H+ + + G R+RSG V+ G
Sbjct: 106 LAHVEAYIDFGEDDNLEEGVLERANSQVRELELALSAHLRDARR-GQRLRSGAHIVVTGP 164
Query: 374 PNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIET 433
PN GKSSL+N L +K +SIV+ PGTTRDV+E +D+ G+P +L DTAGLR + E
Sbjct: 165 PNAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGFPALLSDTAGLREGAGPV-EQ 223
Query: 434 EG 435
EG
Sbjct: 224 EG 225
>TIGR_CMR|CJE_1036 [details] [associations]
symbol:CJE_1036 "tRNA modification GTPase TrmE"
species:195099 "Campylobacter jejuni RM1221" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] HAMAP:MF_00379 InterPro:IPR004520 InterPro:IPR005225
InterPro:IPR006073 Pfam:PF01926 GO:GO:0005525 TIGRFAMs:TIGR00231
GO:GO:0005737 GO:GO:0046872 GO:GO:0003924 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0006400 HSSP:Q9X1F8 eggNOG:COG0486
KO:K03650 InterPro:IPR018948 InterPro:IPR025867 Pfam:PF12631
Pfam:PF10396 TIGRFAMs:TIGR00450 OMA:PGEFSEQ ProtClustDB:PRK05291
HOGENOM:HOG000200713 RefSeq:YP_179032.1 ProteinModelPortal:Q5HUK3
STRING:Q5HUK3 GeneID:3231546 KEGG:cjr:CJE1036 PATRIC:20043873
BioCyc:CJEJ195099:GJC0-1063-MONOMER Uniprot:Q5HUK3
Length = 442
Score = 266 (98.7 bits), Expect = 8.4e-21, P = 8.4e-21
Identities = 81/266 (30%), Positives = 138/266 (51%)
Query: 98 HGKCGVSVIRVSGPDTLN-ALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWF 156
HG +S++R+SG L ALK K++ PR+A+ + + +E++ DE + ++F
Sbjct: 12 HGVGSISIVRLSGERALEFALKLSH---KTKLT-PRHATFTKLFNQNNEII-DEAIMIYF 66
Query: 157 PKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTE 216
P SFTGED EFQ+HG +V +L L L G R A GEFSKRA N K+ +
Sbjct: 67 KAPYSFTGEDIVEFQIHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMTPLKAL 125
Query: 217 ALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNIL 276
+ DLI +++ L + M+GNL +L + R ++++LA VE ID+++D++ D +L
Sbjct: 126 NIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLPSD-LL 184
Query: 277 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNT 336
+ S + + + I K I ++ + G K I + + ++ + +L+
Sbjct: 185 EQI-STMCEENSKILKEIYTLSQSKKGLIEGFKIAIV-----GKPNVGKSSLL-NALLSY 237
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRI 362
R+ V + G+ IE S K G +
Sbjct: 238 ERAIVSDIAGTTRDTIEESFKLGTHL 263
Score = 206 (77.6 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
Identities = 53/140 (37%), Positives = 84/140 (60%)
Query: 303 RIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRI 362
+IR+ + V LA VE ID+++D++ D +L + S + + + I K I ++ +
Sbjct: 156 KIRTDL--VKTLAFVETSIDYADDDLPSD-LLEQI-STMCEENSKILKEIYTLSQSKKGL 211
Query: 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAG 422
G K IVG+PNVGKSSL+N L + +IV+ I GTTRD IE+ +G + + ++DTAG
Sbjct: 212 IEGFKIAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAG 271
Query: 423 LRTTTSDIIETEGNLLEKNN 442
+R + D+IE G L K +
Sbjct: 272 IRES-KDVIEQIGVALSKKS 290
Score = 73 (30.8 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
Identities = 20/71 (28%), Positives = 41/71 (57%)
Query: 26 IKNTIFALSSGHGKCGVSVIRVSGPDTLN-ALKSMACYPDQKVPKPRYASLRNIVDPVSK 84
+ +TI A+++ HG +S++R+SG L ALK K+ PR+A+ + + ++
Sbjct: 1 MSDTIAAIATAHGVGSISIVRLSGERALEFALKLSH---KTKLT-PRHATFTKLFNQNNE 56
Query: 85 VVLDEGLCLWF 95
++ DE + ++F
Sbjct: 57 II-DEAIMIYF 66
>WB|WBGene00009557 [details] [associations]
symbol:F39B2.7 species:6239 "Caenorhabditis elegans"
[GO:0003924 "GTPase activity" evidence=IEA] [GO:0005525 "GTP
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006184 "GTP catabolic process" evidence=IEA] [GO:0006400 "tRNA
modification" evidence=IEA] [GO:0015093 "ferrous iron transmembrane
transporter activity" evidence=IEA] [GO:0015684 "ferrous iron
transport" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0007264 "small GTPase mediated signal
transduction" evidence=IEA] HAMAP:MF_00379 InterPro:IPR004520
InterPro:IPR005225 InterPro:IPR006073 Pfam:PF01926 GO:GO:0005525
TIGRFAMs:TIGR00231 GO:GO:0003924 GO:GO:0005622 GO:GO:0006400
HSSP:P25522 eggNOG:COG0486 HOGENOM:HOG000200714 InterPro:IPR018948
InterPro:IPR025867 Pfam:PF12631 Pfam:PF10396 TIGRFAMs:TIGR00450
OMA:PGEFSEQ GeneTree:ENSGT00390000016851 EMBL:Z92834 PIR:T21994
RefSeq:NP_493573.1 ProteinModelPortal:Q9XTZ1 SMR:Q9XTZ1
IntAct:Q9XTZ1 STRING:Q9XTZ1 PaxDb:Q9XTZ1 EnsemblMetazoa:F39B2.7.1
EnsemblMetazoa:F39B2.7.2 GeneID:3564835 KEGG:cel:CELE_F39B2.7
UCSC:F39B2.7 CTD:3564835 WormBase:F39B2.7 InParanoid:Q9XTZ1
NextBio:954161 Uniprot:Q9XTZ1
Length = 439
Score = 261 (96.9 bits), Expect = 3.3e-20, P = 3.3e-20
Identities = 76/267 (28%), Positives = 139/267 (52%)
Query: 103 VSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPKPNSF 162
+++ RVSG +L L+ ++ +KV KP+ + D S+++ DE + ++ P P +F
Sbjct: 16 IAMFRVSGSQSLPVLRQLS---RRKVWKPKTMKYTKLYDSESKII-DEAMAVYLPGPKTF 71
Query: 163 TGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLI 222
TGED EF +HGS AV L + +R A+ GEF++RAF N KL +++ + LI
Sbjct: 72 TGEDTAEFFLHGSQAVAVKFASCLAGIQNVREAKRGEFTRRAFHNGKLSISEVRGIDRLI 131
Query: 223 QAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQ 282
++ TE +R A QM+G ++ + E R+ +++ L+ + IDF E +E L +
Sbjct: 132 KSRTEKERNAAFGQMRGGVRAI--EIRKQLIQILSKLFVIIDFGEHVNLE---LREAQQD 186
Query: 283 VVQLHGSIEKHIELSNKCGVRIRSGIKSVICLA--SVEAYI--DFSEDEI-IEDNILNTV 337
V ++ + + I+ + R + G+ V+ S ++ I + D++ I +I T
Sbjct: 187 VSEILHELNRMIKAWDGAE-RAQRGLDIVLYGRPNSGKSSILNQLAHDDVAIVSSIPGTT 245
Query: 338 RSQ---VVQLHGSIEKHIELSNKCGVR 361
R ++Q++G L++ GVR
Sbjct: 246 RDSLETIIQINGV---RCRLTDTAGVR 269
Score = 195 (73.7 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 51/136 (37%), Positives = 75/136 (55%)
Query: 301 GVRIRSGIKSVI-CLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCG 359
GVR K +I L+ + IDF E +E L + V ++ + + I+ +
Sbjct: 149 GVRAIEIRKQLIQILSKLFVIIDFGEHVNLE---LREAQQDVSEILHELNRMIKAWDGAE 205
Query: 360 VRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLD 419
R + G+ V+ G PN GKSS++N L ++IV+SIPGTTRD +E + I G L D
Sbjct: 206 -RAQRGLDIVLYGRPNSGKSSILNQLAHDDVAIVSSIPGTTRDSLETIIQINGVRCRLTD 264
Query: 420 TAGLRTTTSDIIETEG 435
TAG+R T+D+IE EG
Sbjct: 265 TAGVRQKTNDVIEAEG 280
Score = 98 (39.6 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 28 NTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVL 87
+TIFALSSG +++ RVSG +L L+ ++ +KV KP+ + D SK++
Sbjct: 2 STIFALSSGTLPSAIAMFRVSGSQSLPVLRQLS---RRKVWKPKTMKYTKLYDSESKII- 57
Query: 88 DEGLCLWFP 96
DE + ++ P
Sbjct: 58 DEAMAVYLP 66
>TAIR|locus:2029406 [details] [associations]
symbol:AT1G78010 species:3702 "Arabidopsis thaliana"
[GO:0003924 "GTPase activity" evidence=IEA;ISS] [GO:0005525 "GTP
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006184 "GTP catabolic
process" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA;ISS] [GO:0007264 "small GTPase mediated signal
transduction" evidence=IEA] [GO:0006897 "endocytosis" evidence=RCA]
HAMAP:MF_00379 InterPro:IPR001806 InterPro:IPR004520
InterPro:IPR005225 InterPro:IPR006073 Pfam:PF01926 PRINTS:PR00449
GO:GO:0005525 TIGRFAMs:TIGR00231 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0007264 GO:GO:0003924 GO:GO:0005622
GO:GO:0006400 eggNOG:COG0486 KO:K03650 InterPro:IPR018948
InterPro:IPR025867 Pfam:PF12631 Pfam:PF10396 TIGRFAMs:TIGR00450
HOGENOM:HOG000200713 OMA:IDFPEEV EMBL:BT015351 EMBL:BT015722
IPI:IPI00546429 RefSeq:NP_177924.3 UniGene:At.21626
ProteinModelPortal:Q66GQ1 SMR:Q66GQ1 STRING:Q66GQ1 PaxDb:Q66GQ1
PRIDE:Q66GQ1 EnsemblPlants:AT1G78010.1 GeneID:844136
KEGG:ath:AT1G78010 TAIR:At1g78010 InParanoid:Q66GQ1
PhylomeDB:Q66GQ1 ProtClustDB:CLSN2680810 Genevestigator:Q66GQ1
Uniprot:Q66GQ1
Length = 560
Score = 240 (89.5 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 110/418 (26%), Positives = 189/418 (45%)
Query: 20 RCSHLAIKNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIV 79
R S KN F L S K S+++ + N S+ D++V + +
Sbjct: 27 RISRPISKNLCFVLFSSSPK--TSLLKPRAQSSEN--NSLVFKGDERVVGLVGKVVDDAF 82
Query: 80 DPVSKVVLDEGL-CLWFPRHGKCG-VSVIRVSGPDTL--------NALKSMACYPDQKVS 129
D V + + + P G G V ++R+SGP + +A K+ D
Sbjct: 83 DKVDRFQSSSTIVAIVTPIGGPPGAVGIVRLSGPKAVEVARRVFRSAKKTKKKESDSDTW 142
Query: 130 KPR--YASLRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINAILGALT 187
+P+ + +VD VV DE L + P S+T ED E Q HGS + +L
Sbjct: 143 RPKSHFVEYGAVVDSNGNVV-DEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCV 201
Query: 188 KLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSE 247
+ G R AEPGEF+ RAF N +LDL+Q E + LI A++ AL ++G L
Sbjct: 202 EA-GARLAEPGEFTLRAFLNGRLDLSQAENVEKLISAKSSAAADAALEGIQGGFSSLVKS 260
Query: 248 WRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSG 307
R +E L +EA +DF EDE+ +I +V +++ + +E ++ +N + ++SG
Sbjct: 261 LRAQCIELLTEIEARLDF-EDEMPPLDI-ESVINKITSMSQDVESALDTANYDKL-LQSG 317
Query: 308 IK-SVICLASV--EAYID-FSEDE-IIEDNILNTVRSQVVQLHGSIEK-HIELSNKCGVR 361
++ +++ +V + ++ +S+ E I + T R VV+ + ++ I L + G+R
Sbjct: 318 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEVAGTTRD-VVEANVTVRGVPITLLDTAGIR 376
Query: 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDI-GGYPVILL 418
+ I I V +S + I V+++ G T + E I P+IL+
Sbjct: 377 ETNDIVEKI----GVERSETAAKVADVIIMAVSAVEGWTEEDTELLRKIQSDKPMILV 430
Score = 224 (83.9 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 50/122 (40%), Positives = 81/122 (66%)
Query: 314 LASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGE 373
L +EA +DF EDE+ +I +V +++ + +E ++ +N + ++SG++ IVG
Sbjct: 269 LTEIEARLDF-EDEMPPLDI-ESVINKITSMSQDVESALDTANYDKL-LQSGLQIAIVGR 325
Query: 374 PNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIET 433
PNVGKSSL+N + + +IVT + GTTRDV+E ++ + G P+ LLDTAG+R T +DI+E
Sbjct: 326 PNVGKSSLLNAWSKSERAIVTEVAGTTRDVVEANVTVRGVPITLLDTAGIRET-NDIVEK 384
Query: 434 EG 435
G
Sbjct: 385 IG 386
>UNIPROTKB|P75104 [details] [associations]
symbol:mnmE "tRNA modification GTPase MnmE" species:272634
"Mycoplasma pneumoniae M129" [GO:0005515 "protein binding"
evidence=IPI] HAMAP:MF_00379 InterPro:IPR001806 InterPro:IPR004520
InterPro:IPR005225 InterPro:IPR006073 Pfam:PF01926 PRINTS:PR00449
GO:GO:0005525 TIGRFAMs:TIGR00231 GO:GO:0005737 GO:GO:0007264
GO:GO:0046872 GO:GO:0003924 GO:GO:0006400 EMBL:U00089
GenomeReviews:U00089_GR eggNOG:COG0486 KO:K03650 InterPro:IPR018948
InterPro:IPR025867 Pfam:PF12631 Pfam:PF10396 TIGRFAMs:TIGR00450
ProtClustDB:PRK05291 OMA:IDFPEEV PIR:S73472 RefSeq:NP_109696.1
ProteinModelPortal:P75104 IntAct:P75104 GeneID:877349
KEGG:mpn:MPN008 PATRIC:20021289 BioCyc:MPNE272634:GJ6Z-8-MONOMER
Uniprot:P75104
Length = 442
Score = 214 (80.4 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 73/272 (26%), Positives = 134/272 (49%)
Query: 103 VSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNI--VDPVSEVVLDEGLCLWFPKPN 160
+ +IR+SGPD + + K KP ++ + +D + V D+ L F PN
Sbjct: 19 IHIIRLSGPDVYRIINQIT----NKEVKPLGMRIQRVWLIDHNQKKV-DDVLLFKFVAPN 73
Query: 161 SFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEALGD 220
S+TGED E HGS+ ++N I+G L K G A+PGEF++R + N K+ L Q ++ +
Sbjct: 74 SYTGEDLIEISCHGSMVIVNEIIGLLLK-HGAVQAQPGEFTQRGYLNGKMSLNQAASVNN 132
Query: 221 LIQAETELQRQKALHQMKGN----LKQLYSEWRQLILESLASVEAYIDFSE--DEIIEDN 274
L+ + + AL+ + G L+ L + QL+++ +E +D+ E DE E
Sbjct: 133 LVLSPNTTLKDVALNALAGQVDARLEPLVEKLGQLVMQ----MEVNLDYPEYTDEQRELV 188
Query: 275 ILNTVRSQVVQLHGSI---EKHIE-LSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIE 330
+N Q+ Q+ I + ++ L + + I G +V + + A +D +D+ I
Sbjct: 189 TMNQAVVQITQILNQIVVGQDQLQRLKDPFKIAI-IGNTNVGKSSLLNALLD--QDKAIV 245
Query: 331 DNILNTVRSQVVQLHGSIEKH-IELSNKCGVR 361
I + R +V+ ++ H +++ + G+R
Sbjct: 246 SAIKGSTRD-IVEGDFALNGHFVKILDTAGIR 276
Score = 157 (60.3 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 43/119 (36%), Positives = 65/119 (54%)
Query: 317 VEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNV 376
+E +D+ E E L T+ VVQ+ I I + R++ K I+G NV
Sbjct: 171 MEVNLDYPE-YTDEQRELVTMNQAVVQIT-QILNQIVVGQDQLQRLKDPFKIAIIGNTNV 228
Query: 377 GKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
GKSSL+N L + +IV++I G+TRD++E + G+ V +LDTAG+R S +E G
Sbjct: 229 GKSSLLNALLDQDKAIVSAIKGSTRDIVEGDFALNGHFVKILDTAGIRQHQS-ALEKAG 286
Score = 64 (27.6 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 22/85 (25%), Positives = 38/85 (44%)
Query: 27 KNTIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNI--VDPVSK 84
K T+FAL++ + +IR+SGPD + + K KP ++ + +D K
Sbjct: 4 KQTMFALATAPFNSAIHIIRLSGPDVYRIINQIT----NKEVKPLGMRIQRVWLIDHNQK 59
Query: 85 VVLDEGLCLWFPRHGKCGVSVIRVS 109
V D L + + G +I +S
Sbjct: 60 KVDDVLLFKFVAPNSYTGEDLIEIS 84
>TIGR_CMR|CHY_1919 [details] [associations]
symbol:CHY_1919 "GTP-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0005525 "GTP
binding" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] HAMAP:MF_00195 InterPro:IPR003593 InterPro:IPR005225
InterPro:IPR006073 InterPro:IPR016484 Pfam:PF01926
PIRSF:PIRSF006485 PRINTS:PR00326 SMART:SM00382 GO:GO:0005525
TIGRFAMs:TIGR00231 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0042254 GO:GO:0017111 eggNOG:COG1160 HOGENOM:HOG000242861
KO:K03977 ProtClustDB:PRK00093 Gene3D:3.30.300.20
InterPro:IPR015946 PANTHER:PTHR11649:SF5 TIGRFAMs:TIGR03594
OMA:YLENTYR RefSeq:YP_360738.1 ProteinModelPortal:Q3AAU6
STRING:Q3AAU6 GeneID:3728232 KEGG:chy:CHY_1919 PATRIC:21276929
BioCyc:CHYD246194:GJCN-1918-MONOMER Uniprot:Q3AAU6
Length = 440
Score = 153 (58.9 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 30/59 (50%), Positives = 42/59 (71%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424
+K +VG PNVGKSSL+N L ++ +V+ IPGTTRD I+ + G P +L+DTAG+R
Sbjct: 177 VKIAVVGRPNVGKSSLVNALLGEERVVVSDIPGTTRDAIDTPMWYQGKPYLLIDTAGMR 235
Score = 120 (47.3 bits), Expect = 0.00032, P = 0.00032
Identities = 28/65 (43%), Positives = 39/65 (60%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
IVG PNVGKS+L N + ++I+IV PG TRD + + G L+DT GL + D
Sbjct: 8 IVGRPNVGKSTLFNRIIGERIAIVEDTPGVTRDRLYSEAEWQGKVFDLIDTGGLEFS-ED 66
Query: 430 IIETE 434
+I T+
Sbjct: 67 LITTK 71
>UNIPROTKB|Q3Z6P5 [details] [associations]
symbol:der "GTPase Der" species:243164 "Dehalococcoides
ethenogenes 195" [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_00195 InterPro:IPR003593 InterPro:IPR005225
InterPro:IPR006073 InterPro:IPR016484 Pfam:PF01926
PIRSF:PIRSF006485 PRINTS:PR00326 SMART:SM00382 GO:GO:0005525
TIGRFAMs:TIGR00231 GO:GO:0042254 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0017111 eggNOG:COG1160
HOGENOM:HOG000242861 KO:K03977 OMA:IEWISSS ProtClustDB:PRK00093
Gene3D:3.30.300.20 InterPro:IPR015946 PANTHER:PTHR11649:SF5
TIGRFAMs:TIGR03594 RefSeq:YP_182104.1 ProteinModelPortal:Q3Z6P5
STRING:Q3Z6P5 GeneID:3229314 KEGG:det:DET1395 PATRIC:21609817
BioCyc:DETH243164:GJNF-1396-MONOMER Uniprot:Q3Z6P5
Length = 441
Score = 153 (58.9 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 30/61 (49%), Positives = 44/61 (72%)
Query: 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGL 423
+ +K +VG NVGKS+L+N ++ SIV++IPGTTRD I+ L+ G V+L+DTAG+
Sbjct: 178 NSVKLALVGRTNVGKSTLLNTFMGQERSIVSNIPGTTRDAIDTPLNFNGTNVLLIDTAGI 237
Query: 424 R 424
R
Sbjct: 238 R 238
Score = 117 (46.2 bits), Expect = 0.00068, P = 0.00068
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
IVG NVGKS+L+N L K ++I +PGTTRD + + +I++DT GL
Sbjct: 10 IVGRQNVGKSTLLNRLAHKNLAITEDLPGTTRDRLFTTVSWLDRRLIMVDTGGLDPDLES 69
Query: 430 IIETEGNL 437
II + N+
Sbjct: 70 IIGQQVNI 77
>TIGR_CMR|DET_1395 [details] [associations]
symbol:DET_1395 "GTP-binding protein" species:243164
"Dehalococcoides ethenogenes 195" [GO:0005525 "GTP binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_00195 InterPro:IPR003593 InterPro:IPR005225
InterPro:IPR006073 InterPro:IPR016484 Pfam:PF01926
PIRSF:PIRSF006485 PRINTS:PR00326 SMART:SM00382 GO:GO:0005525
TIGRFAMs:TIGR00231 GO:GO:0042254 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0017111 eggNOG:COG1160
HOGENOM:HOG000242861 KO:K03977 OMA:IEWISSS ProtClustDB:PRK00093
Gene3D:3.30.300.20 InterPro:IPR015946 PANTHER:PTHR11649:SF5
TIGRFAMs:TIGR03594 RefSeq:YP_182104.1 ProteinModelPortal:Q3Z6P5
STRING:Q3Z6P5 GeneID:3229314 KEGG:det:DET1395 PATRIC:21609817
BioCyc:DETH243164:GJNF-1396-MONOMER Uniprot:Q3Z6P5
Length = 441
Score = 153 (58.9 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 30/61 (49%), Positives = 44/61 (72%)
Query: 364 SGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGL 423
+ +K +VG NVGKS+L+N ++ SIV++IPGTTRD I+ L+ G V+L+DTAG+
Sbjct: 178 NSVKLALVGRTNVGKSTLLNTFMGQERSIVSNIPGTTRDAIDTPLNFNGTNVLLIDTAGI 237
Query: 424 R 424
R
Sbjct: 238 R 238
Score = 117 (46.2 bits), Expect = 0.00068, P = 0.00068
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
IVG NVGKS+L+N L K ++I +PGTTRD + + +I++DT GL
Sbjct: 10 IVGRQNVGKSTLLNRLAHKNLAITEDLPGTTRDRLFTTVSWLDRRLIMVDTGGLDPDLES 69
Query: 430 IIETEGNL 437
II + N+
Sbjct: 70 IIGQQVNI 77
>UNIPROTKB|Q5LR04 [details] [associations]
symbol:der "GTPase Der" species:246200 "Ruegeria pomeroyi
DSS-3" [GO:0008150 "biological_process" evidence=ND] HAMAP:MF_00195
InterPro:IPR001806 InterPro:IPR005225 InterPro:IPR006073
InterPro:IPR016484 Pfam:PF01926 PIRSF:PIRSF006485 PRINTS:PR00449
GO:GO:0005525 TIGRFAMs:TIGR00231 GO:GO:0007264 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0042254 eggNOG:COG1160 KO:K03977
ProtClustDB:PRK00093 Gene3D:3.30.300.20 InterPro:IPR015946
PANTHER:PTHR11649:SF5 TIGRFAMs:TIGR03594 HSSP:Q9X1F8 OMA:YLENTYR
HOGENOM:HOG000242862 RefSeq:YP_167551.1 ProteinModelPortal:Q5LR04
GeneID:3194590 KEGG:sil:SPO2328 PATRIC:23378019 Uniprot:Q5LR04
Length = 487
Score = 141 (54.7 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
IVG PNVGKS+L N L K++++V PG TRD+ E +G ++DTAGL T T D
Sbjct: 7 IVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGQARLGDLRFTVIDTAGLETATDD 66
Query: 430 IIE 432
++
Sbjct: 67 SLQ 69
>TIGR_CMR|SPO_2328 [details] [associations]
symbol:SPO_2328 "GTP-binding protein EngA" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0005525 "GTP binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_00195
InterPro:IPR001806 InterPro:IPR005225 InterPro:IPR006073
InterPro:IPR016484 Pfam:PF01926 PIRSF:PIRSF006485 PRINTS:PR00449
GO:GO:0005525 TIGRFAMs:TIGR00231 GO:GO:0007264 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0042254 eggNOG:COG1160 KO:K03977
ProtClustDB:PRK00093 Gene3D:3.30.300.20 InterPro:IPR015946
PANTHER:PTHR11649:SF5 TIGRFAMs:TIGR03594 HSSP:Q9X1F8 OMA:YLENTYR
HOGENOM:HOG000242862 RefSeq:YP_167551.1 ProteinModelPortal:Q5LR04
GeneID:3194590 KEGG:sil:SPO2328 PATRIC:23378019 Uniprot:Q5LR04
Length = 487
Score = 141 (54.7 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
IVG PNVGKS+L N L K++++V PG TRD+ E +G ++DTAGL T T D
Sbjct: 7 IVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGQARLGDLRFTVIDTAGLETATDD 66
Query: 430 IIE 432
++
Sbjct: 67 SLQ 69
>DICTYBASE|DDB_G0279259 [details] [associations]
symbol:DDB_G0279259 "putative GTP-binding protein"
species:44689 "Dictyostelium discoideum" [GO:0005525 "GTP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
HAMAP:MF_00195 InterPro:IPR005225 InterPro:IPR006073
InterPro:IPR016484 Pfam:PF01926 PRINTS:PR00326
dictyBase:DDB_G0279259 GO:GO:0005525 TIGRFAMs:TIGR00231
EMBL:AAFI02000030 eggNOG:COG1160 KO:K03977 Gene3D:3.30.300.20
InterPro:IPR015946 PANTHER:PTHR11649:SF5 TIGRFAMs:TIGR03594
RefSeq:XP_641756.1 ProteinModelPortal:Q54X21 STRING:Q54X21
EnsemblProtists:DDB0205682 GeneID:8621954 KEGG:ddi:DDB_G0279259
InParanoid:Q54X21 Uniprot:Q54X21
Length = 841
Score = 139 (54.0 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 35/87 (40%), Positives = 55/87 (63%)
Query: 351 HIELS-NKCGVRIRSG-IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIE-KH 407
H++LS K ++ G I+ IVG+PN GKSSL+N + +++ SIV+ IPGTT D ++
Sbjct: 328 HMDLSLEKLEEDLKPGPIRISIVGQPNAGKSSLLNKIIEEERSIVSDIPGTTHDPVDCNF 387
Query: 408 LDIGGYPVILLDTAGLRTTTSDIIETE 434
L + + L+DTAG+R ++ I E
Sbjct: 388 LWRDTHELSLIDTAGIRRRSTHKIGLE 414
>UNIPROTKB|Q47WC5 [details] [associations]
symbol:der "GTPase Der" species:167879 "Colwellia
psychrerythraea 34H" [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_00195 InterPro:IPR003593 InterPro:IPR005225
InterPro:IPR006073 InterPro:IPR016484 Pfam:PF01926
PIRSF:PIRSF006485 PRINTS:PR00326 SMART:SM00382 GO:GO:0005525
TIGRFAMs:TIGR00231 GO:GO:0042254 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 eggNOG:COG1160 KO:K03977
ProtClustDB:PRK00093 Gene3D:3.30.300.20 InterPro:IPR015946
PANTHER:PTHR11649:SF5 TIGRFAMs:TIGR03594 OMA:YLENTYR
RefSeq:YP_270897.1 ProteinModelPortal:Q47WC5 STRING:Q47WC5
GeneID:3520024 KEGG:cps:CPS_4247 PATRIC:21471359
HOGENOM:HOG000242862 BioCyc:CPSY167879:GI48-4257-MONOMER
Uniprot:Q47WC5
Length = 498
Score = 132 (51.5 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425
IK I+G PNVGKS+L N + ++ +V +PGTTRD + ++ G L+DTAG+R
Sbjct: 213 IKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSVYIPMERNGREYTLIDTAGIRR 272
Query: 426 --TTSDIIE 432
+D++E
Sbjct: 273 RKNVTDVVE 281
Score = 42 (19.8 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 195 AEPGEFSKRAFFNNK-LDLTQTE 216
A GEF AFF++K ++LT+ E
Sbjct: 177 ASEGEFDD-AFFSDKDVELTEEE 198
>TIGR_CMR|CPS_4247 [details] [associations]
symbol:CPS_4247 "GTP-binding protein EngA" species:167879
"Colwellia psychrerythraea 34H" [GO:0005525 "GTP binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_00195 InterPro:IPR003593 InterPro:IPR005225
InterPro:IPR006073 InterPro:IPR016484 Pfam:PF01926
PIRSF:PIRSF006485 PRINTS:PR00326 SMART:SM00382 GO:GO:0005525
TIGRFAMs:TIGR00231 GO:GO:0042254 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 eggNOG:COG1160 KO:K03977
ProtClustDB:PRK00093 Gene3D:3.30.300.20 InterPro:IPR015946
PANTHER:PTHR11649:SF5 TIGRFAMs:TIGR03594 OMA:YLENTYR
RefSeq:YP_270897.1 ProteinModelPortal:Q47WC5 STRING:Q47WC5
GeneID:3520024 KEGG:cps:CPS_4247 PATRIC:21471359
HOGENOM:HOG000242862 BioCyc:CPSY167879:GI48-4257-MONOMER
Uniprot:Q47WC5
Length = 498
Score = 132 (51.5 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425
IK I+G PNVGKS+L N + ++ +V +PGTTRD + ++ G L+DTAG+R
Sbjct: 213 IKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSVYIPMERNGREYTLIDTAGIRR 272
Query: 426 --TTSDIIE 432
+D++E
Sbjct: 273 RKNVTDVVE 281
Score = 42 (19.8 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 195 AEPGEFSKRAFFNNK-LDLTQTE 216
A GEF AFF++K ++LT+ E
Sbjct: 177 ASEGEFDD-AFFSDKDVELTEEE 198
>UNIPROTKB|Q81SW9 [details] [associations]
symbol:der "GTPase Der" species:1392 "Bacillus anthracis"
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_00195
InterPro:IPR005225 InterPro:IPR006073 InterPro:IPR016484
Pfam:PF01926 PIRSF:PIRSF006485 PRINTS:PR00326 GO:GO:0005525
TIGRFAMs:TIGR00231 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0042254 RefSeq:NP_843976.1
RefSeq:YP_018148.1 RefSeq:YP_027683.1 ProteinModelPortal:Q81SW9
SMR:Q81SW9 IntAct:Q81SW9 DNASU:1086325
EnsemblBacteria:EBBACT00000011036 EnsemblBacteria:EBBACT00000013653
EnsemblBacteria:EBBACT00000023216 GeneID:1086325 GeneID:2817326
GeneID:2849869 KEGG:ban:BA_1525 KEGG:bar:GBAA_1525 KEGG:bat:BAS1414
eggNOG:COG1160 HOGENOM:HOG000242861 KO:K03977 OMA:IEWISSS
ProtClustDB:PRK00093 BioCyc:BANT260799:GJAJ-1488-MONOMER
BioCyc:BANT261594:GJ7F-1550-MONOMER Gene3D:3.30.300.20
InterPro:IPR015946 PANTHER:PTHR11649:SF5 TIGRFAMs:TIGR03594
Uniprot:Q81SW9
Length = 436
Score = 130 (50.8 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424
I+ ++G PNVGKSSL+N L ++ IV+++ GTTRD ++ G +++DTAG+R
Sbjct: 176 IRFSLIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMR 234
>TIGR_CMR|BA_1525 [details] [associations]
symbol:BA_1525 "GTPase family protein" species:198094
"Bacillus anthracis str. Ames" [GO:0003924 "GTPase activity"
evidence=ISS] [GO:0005525 "GTP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00195 InterPro:IPR005225
InterPro:IPR006073 InterPro:IPR016484 Pfam:PF01926
PIRSF:PIRSF006485 PRINTS:PR00326 GO:GO:0005525 TIGRFAMs:TIGR00231
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0042254
RefSeq:NP_843976.1 RefSeq:YP_018148.1 RefSeq:YP_027683.1
ProteinModelPortal:Q81SW9 SMR:Q81SW9 IntAct:Q81SW9 DNASU:1086325
EnsemblBacteria:EBBACT00000011036 EnsemblBacteria:EBBACT00000013653
EnsemblBacteria:EBBACT00000023216 GeneID:1086325 GeneID:2817326
GeneID:2849869 KEGG:ban:BA_1525 KEGG:bar:GBAA_1525 KEGG:bat:BAS1414
eggNOG:COG1160 HOGENOM:HOG000242861 KO:K03977 OMA:IEWISSS
ProtClustDB:PRK00093 BioCyc:BANT260799:GJAJ-1488-MONOMER
BioCyc:BANT261594:GJ7F-1550-MONOMER Gene3D:3.30.300.20
InterPro:IPR015946 PANTHER:PTHR11649:SF5 TIGRFAMs:TIGR03594
Uniprot:Q81SW9
Length = 436
Score = 130 (50.8 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424
I+ ++G PNVGKSSL+N L ++ IV+++ GTTRD ++ G +++DTAG+R
Sbjct: 176 IRFSLIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMR 234
>UNIPROTKB|P0A6P5 [details] [associations]
symbol:der "50S ribosomal subunit stability factor"
species:83333 "Escherichia coli K-12" [GO:0005829 "cytosol"
evidence=IDA] [GO:0006184 "GTP catabolic process" evidence=IDA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0032794 "GTPase
activating protein binding" evidence=IPI] [GO:0043022 "ribosome
binding" evidence=IDA] [GO:0003924 "GTPase activity" evidence=IDA]
[GO:0005525 "GTP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000027 "ribosomal large subunit
assembly" evidence=IMP] HAMAP:MF_00195 InterPro:IPR005225
InterPro:IPR006073 InterPro:IPR016484 Pfam:PF01926
PIRSF:PIRSF006485 PRINTS:PR00326 GO:GO:0005525 TIGRFAMs:TIGR00231
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003924 GO:GO:0043022 GO:GO:0000027
eggNOG:COG1160 KO:K03977 ProtClustDB:PRK00093 Gene3D:3.30.300.20
InterPro:IPR015946 PANTHER:PTHR11649:SF5 TIGRFAMs:TIGR03594
OMA:YLENTYR HOGENOM:HOG000242862 PIR:F65027 RefSeq:NP_417006.2
RefSeq:YP_490739.1 ProteinModelPortal:P0A6P5 SMR:P0A6P5
DIP:DIP-48272N IntAct:P0A6P5 PaxDb:P0A6P5 PRIDE:P0A6P5
EnsemblBacteria:EBESCT00000000698 EnsemblBacteria:EBESCT00000017218
GeneID:12934159 GeneID:946983 KEGG:ecj:Y75_p2464 KEGG:eco:b2511
PATRIC:32120415 EchoBASE:EB3959 EcoGene:EG14207
BioCyc:EcoCyc:G7319-MONOMER BioCyc:ECOL316407:JW5403-MONOMER
BioCyc:MetaCyc:G7319-MONOMER Genevestigator:P0A6P5 Uniprot:P0A6P5
Length = 490
Score = 130 (50.8 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424
IK IVG PNVGKS+L N + ++ +V +PGTTRD I ++ G +L+DTAG+R
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVR 261
>UNIPROTKB|Q2GDM7 [details] [associations]
symbol:NSE_0536 "GTPase Der" species:222891 "Neorickettsia
sennetsu str. Miyayama" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001806 InterPro:IPR005225
InterPro:IPR006073 InterPro:IPR016484 Pfam:PF01926
PIRSF:PIRSF006485 PRINTS:PR00449 GO:GO:0005525 TIGRFAMs:TIGR00231
GO:GO:0007264 GO:GO:0042254 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG1160 KO:K03977 ProtClustDB:PRK00093 Gene3D:3.30.300.20
InterPro:IPR015946 PANTHER:PTHR11649:SF5 TIGRFAMs:TIGR03594
HOGENOM:HOG000242862 OMA:TNVLNEV RefSeq:YP_506419.1
ProteinModelPortal:Q2GDM7 STRING:Q2GDM7 GeneID:3931630
KEGG:nse:NSE_0536 PATRIC:22681121
BioCyc:NSEN222891:GHFU-555-MONOMER Uniprot:Q2GDM7
Length = 473
Score = 127 (49.8 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 35/88 (39%), Positives = 47/88 (53%)
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+R + + I + ++ + K G + IK I+G+PNVGKSSLMN K +V I
Sbjct: 146 LRELISYIESFIPEQLD-TPKNGSEEQRRIKVAILGQPNVGKSSLMNKFVGKDRVLVLPI 204
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLR 424
GTTRD I L L+DTAGLR
Sbjct: 205 AGTTRDPISDELQWKCTTFELVDTAGLR 232
Score = 119 (46.9 bits), Expect = 0.00046, P = 0.00046
Identities = 29/82 (35%), Positives = 48/82 (58%)
Query: 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG-GYPVILLDT 420
++S + IVG+ NVGKS+L N + +++ SI G TRDV+ + + + G ++LLDT
Sbjct: 1 MQSTFRVSIVGKANVGKSTLFNKMAKEKRSITMDRKGVTRDVVVRRISLSDGKSLLLLDT 60
Query: 421 AGLRTTTSDIIE-TEGNLLEKN 441
AG + +E TE + E +
Sbjct: 61 AGFNPQHPETVERTEYAIKESD 82
>TIGR_CMR|NSE_0536 [details] [associations]
symbol:NSE_0536 "putative GTP-binding protein EngA"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0005525
"GTP binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001806 InterPro:IPR005225
InterPro:IPR006073 InterPro:IPR016484 Pfam:PF01926
PIRSF:PIRSF006485 PRINTS:PR00449 GO:GO:0005525 TIGRFAMs:TIGR00231
GO:GO:0007264 GO:GO:0042254 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG1160 KO:K03977 ProtClustDB:PRK00093 Gene3D:3.30.300.20
InterPro:IPR015946 PANTHER:PTHR11649:SF5 TIGRFAMs:TIGR03594
HOGENOM:HOG000242862 OMA:TNVLNEV RefSeq:YP_506419.1
ProteinModelPortal:Q2GDM7 STRING:Q2GDM7 GeneID:3931630
KEGG:nse:NSE_0536 PATRIC:22681121
BioCyc:NSEN222891:GHFU-555-MONOMER Uniprot:Q2GDM7
Length = 473
Score = 127 (49.8 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 35/88 (39%), Positives = 47/88 (53%)
Query: 337 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+R + + I + ++ + K G + IK I+G+PNVGKSSLMN K +V I
Sbjct: 146 LRELISYIESFIPEQLD-TPKNGSEEQRRIKVAILGQPNVGKSSLMNKFVGKDRVLVLPI 204
Query: 397 PGTTRDVIEKHLDIGGYPVILLDTAGLR 424
GTTRD I L L+DTAGLR
Sbjct: 205 AGTTRDPISDELQWKCTTFELVDTAGLR 232
Score = 119 (46.9 bits), Expect = 0.00046, P = 0.00046
Identities = 29/82 (35%), Positives = 48/82 (58%)
Query: 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIG-GYPVILLDT 420
++S + IVG+ NVGKS+L N + +++ SI G TRDV+ + + + G ++LLDT
Sbjct: 1 MQSTFRVSIVGKANVGKSTLFNKMAKEKRSITMDRKGVTRDVVVRRISLSDGKSLLLLDT 60
Query: 421 AGLRTTTSDIIE-TEGNLLEKN 441
AG + +E TE + E +
Sbjct: 61 AGFNPQHPETVERTEYAIKESD 82
>UNIPROTKB|Q8EC36 [details] [associations]
symbol:der "GTPase Der" species:211586 "Shewanella
oneidensis MR-1" [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_00195 InterPro:IPR003593 InterPro:IPR005225
InterPro:IPR006073 InterPro:IPR016484 Pfam:PF01926
PIRSF:PIRSF006485 PRINTS:PR00326 SMART:SM00382 GO:GO:0005525
TIGRFAMs:TIGR00231 GO:GO:0042254 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0017111 eggNOG:COG1160 KO:K03977
ProtClustDB:PRK00093 Gene3D:3.30.300.20 InterPro:IPR015946
PANTHER:PTHR11649:SF5 TIGRFAMs:TIGR03594 OMA:YLENTYR
HOGENOM:HOG000242862 RefSeq:NP_718862.1 ProteinModelPortal:Q8EC36
GeneID:1170993 KEGG:son:SO_3308 PATRIC:23526292 Uniprot:Q8EC36
Length = 487
Score = 126 (49.4 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 28/69 (40%), Positives = 44/69 (63%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425
IK I+G+PNVGKS+L N + ++ +V PGTTRD I ++ G +++DTAG+R
Sbjct: 199 IKLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMERDGREYVIIDTAGVRR 258
Query: 426 TTS--DIIE 432
+ ++IE
Sbjct: 259 RSKVHEVIE 267
Score = 118 (46.6 bits), Expect = 0.00062, P = 0.00062
Identities = 27/65 (41%), Positives = 39/65 (60%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
+VG PNVGKS+L N L + + ++V PG TRD + GY I++DT G+ T +
Sbjct: 7 LVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGI-DGTEE 65
Query: 430 IIETE 434
IET+
Sbjct: 66 GIETK 70
>TIGR_CMR|SO_3308 [details] [associations]
symbol:SO_3308 "GTP-binding protein EngA" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0005525 "GTP binding" evidence=ISS] HAMAP:MF_00195
InterPro:IPR003593 InterPro:IPR005225 InterPro:IPR006073
InterPro:IPR016484 Pfam:PF01926 PIRSF:PIRSF006485 PRINTS:PR00326
SMART:SM00382 GO:GO:0005525 TIGRFAMs:TIGR00231 GO:GO:0042254
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111
eggNOG:COG1160 KO:K03977 ProtClustDB:PRK00093 Gene3D:3.30.300.20
InterPro:IPR015946 PANTHER:PTHR11649:SF5 TIGRFAMs:TIGR03594
OMA:YLENTYR HOGENOM:HOG000242862 RefSeq:NP_718862.1
ProteinModelPortal:Q8EC36 GeneID:1170993 KEGG:son:SO_3308
PATRIC:23526292 Uniprot:Q8EC36
Length = 487
Score = 126 (49.4 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 28/69 (40%), Positives = 44/69 (63%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425
IK I+G+PNVGKS+L N + ++ +V PGTTRD I ++ G +++DTAG+R
Sbjct: 199 IKLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMERDGREYVIIDTAGVRR 258
Query: 426 TTS--DIIE 432
+ ++IE
Sbjct: 259 RSKVHEVIE 267
Score = 118 (46.6 bits), Expect = 0.00062, P = 0.00062
Identities = 27/65 (41%), Positives = 39/65 (60%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
+VG PNVGKS+L N L + + ++V PG TRD + GY I++DT G+ T +
Sbjct: 7 LVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGI-DGTEE 65
Query: 430 IIETE 434
IET+
Sbjct: 66 GIETK 70
>UNIPROTKB|P64057 [details] [associations]
symbol:der "GTPase Der" species:1773 "Mycobacterium
tuberculosis" [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
HAMAP:MF_00195 InterPro:IPR003593 InterPro:IPR005225
InterPro:IPR006073 InterPro:IPR016484 Pfam:PF01926
PIRSF:PIRSF006485 PRINTS:PR00326 SMART:SM00382 GO:GO:0005525
TIGRFAMs:TIGR00231 GO:GO:0005886 GO:GO:0040007 GO:GO:0005618
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0042254 EMBL:BX842577 GO:GO:0017111 eggNOG:COG1160
HOGENOM:HOG000242861 KO:K03977 Gene3D:3.30.300.20
InterPro:IPR015946 PANTHER:PTHR11649:SF5 TIGRFAMs:TIGR03594
PIR:H70504 RefSeq:NP_216229.1 RefSeq:NP_336210.1
RefSeq:YP_006515108.1 ProteinModelPortal:P64057 SMR:P64057
PRIDE:P64057 EnsemblBacteria:EBMYCT00000000320
EnsemblBacteria:EBMYCT00000071863 GeneID:13316498 GeneID:885086
GeneID:923951 KEGG:mtc:MT1753 KEGG:mtu:Rv1713 KEGG:mtv:RVBD_1713
PATRIC:18125608 TubercuList:Rv1713 OMA:NCFLVIN ProtClustDB:PRK03003
Uniprot:P64057
Length = 463
Score = 125 (49.1 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 27/55 (49%), Positives = 37/55 (67%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424
+VG+PNVGKSSL+N L Q S+V GTT D ++ +++GG +DTAGLR
Sbjct: 204 LVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIELGGDVWRFVDTAGLR 258
>TAIR|locus:2099277 [details] [associations]
symbol:emb2738 "embryo defective 2738" species:3702
"Arabidopsis thaliana" [GO:0005525 "GTP binding" evidence=IEA;ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0009793 "embryo
development ending in seed dormancy" evidence=NAS] [GO:0009507
"chloroplast" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0006399 "tRNA metabolic process" evidence=RCA]
[GO:0009658 "chloroplast organization" evidence=RCA] HAMAP:MF_00195
InterPro:IPR005225 InterPro:IPR006073 InterPro:IPR016484
Pfam:PF01926 PRINTS:PR00326 GO:GO:0005525 TIGRFAMs:TIGR00231
GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR
eggNOG:COG1160 HOGENOM:HOG000242861 OMA:IEWISSS Gene3D:3.30.300.20
InterPro:IPR015946 PANTHER:PTHR11649:SF5 TIGRFAMs:TIGR03594
EMBL:BT046184 IPI:IPI00529367 RefSeq:NP_187815.2 UniGene:At.21430
ProteinModelPortal:B5X565 SMR:B5X565 STRING:B5X565 PaxDb:B5X565
PRIDE:B5X565 EnsemblPlants:AT3G12080.1 GeneID:820382
KEGG:ath:AT3G12080 TAIR:At3g12080 PhylomeDB:B5X565
ProtClustDB:CLSN2918072 Genevestigator:B5X565 Uniprot:B5X565
Length = 663
Score = 127 (49.8 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLD-IGGYPVILLDTAGLRTTTS 428
I+G PNVGKSS++N L ++ +IV+ + GTTRD I+ G L+DTAG+R +S
Sbjct: 373 IIGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRKKSS 432
Query: 429 DIIETEGNLLEKNNQQR 445
+ + G+ E + R
Sbjct: 433 --VASSGSTTEAMSVNR 447
>TIGR_CMR|CJE_0435 [details] [associations]
symbol:CJE_0435 "GTPase family protein" species:195099
"Campylobacter jejuni RM1221" [GO:0003924 "GTPase activity"
evidence=ISS] [GO:0005525 "GTP binding" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] HAMAP:MF_00195 InterPro:IPR005225
InterPro:IPR006073 InterPro:IPR016484 Pfam:PF01926
PIRSF:PIRSF006485 PRINTS:PR00326 GO:GO:0005525 TIGRFAMs:TIGR00231
GO:GO:0042254 EMBL:CP000025 GenomeReviews:CP000025_GR
eggNOG:COG1160 HOGENOM:HOG000242861 KO:K03977 ProtClustDB:PRK00093
Gene3D:3.30.300.20 InterPro:IPR015946 PANTHER:PTHR11649:SF5
TIGRFAMs:TIGR03594 RefSeq:YP_178454.1 HSSP:Q9X1F8
ProteinModelPortal:Q5HW81 STRING:Q5HW81 GeneID:3231197
KEGG:cjr:CJE0435 PATRIC:20042570 OMA:YLENTYR
BioCyc:CJEJ195099:GJC0-440-MONOMER Uniprot:Q5HW81
Length = 460
Score = 124 (48.7 bits), Expect = 0.00012, P = 0.00012
Identities = 23/55 (41%), Positives = 38/55 (69%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGL 423
+++G+PNVGKSSL N + +++I+I + I GTTRD + + I +L+D+ GL
Sbjct: 5 ILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQIHIHSKKAMLIDSGGL 59
>UNIPROTKB|Q74AX4 [details] [associations]
symbol:der "GTPase Der" species:243231 "Geobacter
sulfurreducens PCA" [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_00195 InterPro:IPR005225 InterPro:IPR006073
InterPro:IPR016484 Pfam:PF01926 PIRSF:PIRSF006485 PRINTS:PR00326
GO:GO:0005525 TIGRFAMs:TIGR00231 GO:GO:0042254 EMBL:AE017180
GenomeReviews:AE017180_GR eggNOG:COG1160 KO:K03977
ProtClustDB:PRK00093 Gene3D:3.30.300.20 InterPro:IPR015946
PANTHER:PTHR11649:SF5 TIGRFAMs:TIGR03594 HSSP:Q9X1F8 OMA:YLENTYR
HOGENOM:HOG000242862 RefSeq:NP_953274.1 ProteinModelPortal:Q74AX4
GeneID:2687605 KEGG:gsu:GSU2225 PATRIC:22027305
BioCyc:GSUL243231:GH27-2172-MONOMER Uniprot:Q74AX4
Length = 438
Score = 123 (48.4 bits), Expect = 0.00015, P = 0.00015
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAG 422
R+ K +VG PNVGKSSL+N L + + PGTTRD ++ +L+DTAG
Sbjct: 174 RNATKIAVVGRPNVGKSSLVNRLLGYERVVANPTPGTTRDSVDTWFTCNKKRYLLIDTAG 233
Query: 423 LR 424
+R
Sbjct: 234 IR 235
Score = 118 (46.6 bits), Expect = 0.00053, P = 0.00053
Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
IVG PNVGKS+L N L ++ +IV +PG TRD + + P IL+DT G +SD
Sbjct: 8 IVGRPNVGKSTLFNRLVGRRKAIVDDMPGVTRDRNYETVTRFDVPFILIDTGGFEPESSD 67
>TIGR_CMR|GSU_2225 [details] [associations]
symbol:GSU_2225 "GTP-binding protein Era, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0005525 "GTP
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_00195 InterPro:IPR005225 InterPro:IPR006073
InterPro:IPR016484 Pfam:PF01926 PIRSF:PIRSF006485 PRINTS:PR00326
GO:GO:0005525 TIGRFAMs:TIGR00231 GO:GO:0042254 EMBL:AE017180
GenomeReviews:AE017180_GR eggNOG:COG1160 KO:K03977
ProtClustDB:PRK00093 Gene3D:3.30.300.20 InterPro:IPR015946
PANTHER:PTHR11649:SF5 TIGRFAMs:TIGR03594 HSSP:Q9X1F8 OMA:YLENTYR
HOGENOM:HOG000242862 RefSeq:NP_953274.1 ProteinModelPortal:Q74AX4
GeneID:2687605 KEGG:gsu:GSU2225 PATRIC:22027305
BioCyc:GSUL243231:GH27-2172-MONOMER Uniprot:Q74AX4
Length = 438
Score = 123 (48.4 bits), Expect = 0.00015, P = 0.00015
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAG 422
R+ K +VG PNVGKSSL+N L + + PGTTRD ++ +L+DTAG
Sbjct: 174 RNATKIAVVGRPNVGKSSLVNRLLGYERVVANPTPGTTRDSVDTWFTCNKKRYLLIDTAG 233
Query: 423 LR 424
+R
Sbjct: 234 IR 235
Score = 118 (46.6 bits), Expect = 0.00053, P = 0.00053
Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
IVG PNVGKS+L N L ++ +IV +PG TRD + + P IL+DT G +SD
Sbjct: 8 IVGRPNVGKSTLFNRLVGRRKAIVDDMPGVTRDRNYETVTRFDVPFILIDTGGFEPESSD 67
>UNIPROTKB|Q2GKV6 [details] [associations]
symbol:der "GTPase Der" species:212042 "Anaplasma
phagocytophilum HZ" [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_00195 InterPro:IPR005225 InterPro:IPR006073
InterPro:IPR016484 Pfam:PF01926 PIRSF:PIRSF006485 PRINTS:PR00326
GO:GO:0005525 TIGRFAMs:TIGR00231 GO:GO:0042254 EMBL:CP000235
GenomeReviews:CP000235_GR eggNOG:COG1160 KO:K03977
ProtClustDB:PRK00093 Gene3D:3.30.300.20 InterPro:IPR015946
PANTHER:PTHR11649:SF5 TIGRFAMs:TIGR03594 HOGENOM:HOG000242862
RefSeq:YP_504995.1 ProteinModelPortal:Q2GKV6 STRING:Q2GKV6
GeneID:3931157 KEGG:aph:APH_0390 PATRIC:20949388 OMA:RKKAIVH
BioCyc:APHA212042:GHPM-418-MONOMER Uniprot:Q2GKV6
Length = 440
Score = 123 (48.4 bits), Expect = 0.00015, P = 0.00015
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT 427
I+G+PNVGKS+ +N + ++ I + I GTTRD I G ++L DTAG+R T
Sbjct: 179 IIGQPNVGKSTFVNSILGEERVITSGIAGTTRDSISAEYSYKGITLLLTDTAGIRKRT 236
>TIGR_CMR|APH_0390 [details] [associations]
symbol:APH_0390 "putative GTP-binding protein EngA"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0005525 "GTP
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_00195 InterPro:IPR005225 InterPro:IPR006073
InterPro:IPR016484 Pfam:PF01926 PIRSF:PIRSF006485 PRINTS:PR00326
GO:GO:0005525 TIGRFAMs:TIGR00231 GO:GO:0042254 EMBL:CP000235
GenomeReviews:CP000235_GR eggNOG:COG1160 KO:K03977
ProtClustDB:PRK00093 Gene3D:3.30.300.20 InterPro:IPR015946
PANTHER:PTHR11649:SF5 TIGRFAMs:TIGR03594 HOGENOM:HOG000242862
RefSeq:YP_504995.1 ProteinModelPortal:Q2GKV6 STRING:Q2GKV6
GeneID:3931157 KEGG:aph:APH_0390 PATRIC:20949388 OMA:RKKAIVH
BioCyc:APHA212042:GHPM-418-MONOMER Uniprot:Q2GKV6
Length = 440
Score = 123 (48.4 bits), Expect = 0.00015, P = 0.00015
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTT 427
I+G+PNVGKS+ +N + ++ I + I GTTRD I G ++L DTAG+R T
Sbjct: 179 IIGQPNVGKSTFVNSILGEERVITSGIAGTTRDSISAEYSYKGITLLLTDTAGIRKRT 236
>UNIPROTKB|Q2GGW4 [details] [associations]
symbol:engA "GTPase Der" species:205920 "Ehrlichia
chaffeensis str. Arkansas" [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_00195 InterPro:IPR005225 InterPro:IPR006073
InterPro:IPR016484 Pfam:PF01926 PIRSF:PIRSF006485 PRINTS:PR00326
GO:GO:0005525 TIGRFAMs:TIGR00231 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0042254 eggNOG:COG1160 KO:K03977
ProtClustDB:PRK00093 Gene3D:3.30.300.20 InterPro:IPR015946
PANTHER:PTHR11649:SF5 TIGRFAMs:TIGR03594 OMA:YLENTYR
HOGENOM:HOG000242862 RefSeq:YP_507319.1 ProteinModelPortal:Q2GGW4
STRING:Q2GGW4 GeneID:3927981 KEGG:ech:ECH_0504 PATRIC:20576480
BioCyc:ECHA205920:GJNR-506-MONOMER Uniprot:Q2GGW4
Length = 442
Score = 123 (48.4 bits), Expect = 0.00015, P = 0.00015
Identities = 28/59 (47%), Positives = 35/59 (59%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424
IK IVG PN GKS+ +N L + IV+ PGTTRD I+ G L+DTAG+R
Sbjct: 174 IKLSIVGRPNAGKSTFINRLLAENRMIVSPEPGTTRDSIDVEYTYRGQKFTLIDTAGMR 232
Score = 118 (46.6 bits), Expect = 0.00053, P = 0.00053
Identities = 26/61 (42%), Positives = 38/61 (62%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425
+K IVG PNVGKS++ N L ++ +IV++IP TRD E D+ G ++DT G+
Sbjct: 2 LKIAIVGLPNVGKSTIFNRLTSQKSAIVSNIPNLTRDRREGDADLCGLKFKIVDTGGVDN 61
Query: 426 T 426
T
Sbjct: 62 T 62
>TIGR_CMR|ECH_0504 [details] [associations]
symbol:ECH_0504 "GTP-binding protein EngA" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0005525 "GTP binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_00195 InterPro:IPR005225 InterPro:IPR006073
InterPro:IPR016484 Pfam:PF01926 PIRSF:PIRSF006485 PRINTS:PR00326
GO:GO:0005525 TIGRFAMs:TIGR00231 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0042254 eggNOG:COG1160 KO:K03977
ProtClustDB:PRK00093 Gene3D:3.30.300.20 InterPro:IPR015946
PANTHER:PTHR11649:SF5 TIGRFAMs:TIGR03594 OMA:YLENTYR
HOGENOM:HOG000242862 RefSeq:YP_507319.1 ProteinModelPortal:Q2GGW4
STRING:Q2GGW4 GeneID:3927981 KEGG:ech:ECH_0504 PATRIC:20576480
BioCyc:ECHA205920:GJNR-506-MONOMER Uniprot:Q2GGW4
Length = 442
Score = 123 (48.4 bits), Expect = 0.00015, P = 0.00015
Identities = 28/59 (47%), Positives = 35/59 (59%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424
IK IVG PN GKS+ +N L + IV+ PGTTRD I+ G L+DTAG+R
Sbjct: 174 IKLSIVGRPNAGKSTFINRLLAENRMIVSPEPGTTRDSIDVEYTYRGQKFTLIDTAGMR 232
Score = 118 (46.6 bits), Expect = 0.00053, P = 0.00053
Identities = 26/61 (42%), Positives = 38/61 (62%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425
+K IVG PNVGKS++ N L ++ +IV++IP TRD E D+ G ++DT G+
Sbjct: 2 LKIAIVGLPNVGKSTIFNRLTSQKSAIVSNIPNLTRDRREGDADLCGLKFKIVDTGGVDN 61
Query: 426 T 426
T
Sbjct: 62 T 62
>UNIPROTKB|Q9KTW7 [details] [associations]
symbol:der "GTPase Der" species:243277 "Vibrio cholerae O1
biovar El Tor str. N16961" [GO:0005525 "GTP binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_00195
InterPro:IPR003593 InterPro:IPR005225 InterPro:IPR006073
InterPro:IPR016484 Pfam:PF01926 PIRSF:PIRSF006485 PRINTS:PR00326
SMART:SM00382 GO:GO:0005525 TIGRFAMs:TIGR00231 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0042254 GO:GO:0017111
eggNOG:COG1160 KO:K03977 ProtClustDB:PRK00093 Gene3D:3.30.300.20
InterPro:IPR015946 PANTHER:PTHR11649:SF5 TIGRFAMs:TIGR03594
PIR:B82284 RefSeq:NP_230412.1 ProteinModelPortal:Q9KTW7
DNASU:2615306 GeneID:2615306 KEGG:vch:VC0763 PATRIC:20080637
OMA:TNVLNEV Uniprot:Q9KTW7
Length = 494
Score = 123 (48.4 bits), Expect = 0.00018, P = 0.00018
Identities = 38/102 (37%), Positives = 55/102 (53%)
Query: 324 SEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRS-GIKSVIVGEPNVGKSSLM 382
SE +ED + N + QL S E+ E K R++ IK I+G PNVGKS+L
Sbjct: 168 SEQAQLED-LTNEEDPEEEQLEYS-EEEAEAEYK---RLQDLPIKLAIIGRPNVGKSTLT 222
Query: 383 NFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424
N + ++ +V +PGTTRD I + +L+DTAG+R
Sbjct: 223 NRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVR 264
>TIGR_CMR|VC_0763 [details] [associations]
symbol:VC_0763 "GTP-binding protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0005525 "GTP binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_00195
InterPro:IPR003593 InterPro:IPR005225 InterPro:IPR006073
InterPro:IPR016484 Pfam:PF01926 PIRSF:PIRSF006485 PRINTS:PR00326
SMART:SM00382 GO:GO:0005525 TIGRFAMs:TIGR00231 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0042254 GO:GO:0017111
eggNOG:COG1160 KO:K03977 ProtClustDB:PRK00093 Gene3D:3.30.300.20
InterPro:IPR015946 PANTHER:PTHR11649:SF5 TIGRFAMs:TIGR03594
PIR:B82284 RefSeq:NP_230412.1 ProteinModelPortal:Q9KTW7
DNASU:2615306 GeneID:2615306 KEGG:vch:VC0763 PATRIC:20080637
OMA:TNVLNEV Uniprot:Q9KTW7
Length = 494
Score = 123 (48.4 bits), Expect = 0.00018, P = 0.00018
Identities = 38/102 (37%), Positives = 55/102 (53%)
Query: 324 SEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRS-GIKSVIVGEPNVGKSSLM 382
SE +ED + N + QL S E+ E K R++ IK I+G PNVGKS+L
Sbjct: 168 SEQAQLED-LTNEEDPEEEQLEYS-EEEAEAEYK---RLQDLPIKLAIIGRPNVGKSTLT 222
Query: 383 NFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424
N + ++ +V +PGTTRD I + +L+DTAG+R
Sbjct: 223 NRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVR 264
>UNIPROTKB|Q83C83 [details] [associations]
symbol:der "GTPase Der" species:227377 "Coxiella burnetii
RSA 493" [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_00195 InterPro:IPR005225 InterPro:IPR006073
InterPro:IPR016484 Pfam:PF01926 PIRSF:PIRSF006485 PRINTS:PR00326
GO:GO:0005525 TIGRFAMs:TIGR00231 GO:GO:0042254 EMBL:AE016828
GenomeReviews:AE016828_GR eggNOG:COG1160 KO:K03977
ProtClustDB:PRK00093 Gene3D:3.30.300.20 InterPro:IPR015946
PANTHER:PTHR11649:SF5 TIGRFAMs:TIGR03594 OMA:YLENTYR
HOGENOM:HOG000242862 RefSeq:NP_820240.1 ProteinModelPortal:Q83C83
PRIDE:Q83C83 GeneID:1209150 KEGG:cbu:CBU_1245 PATRIC:17931225
BioCyc:CBUR227377:GJ7S-1232-MONOMER Uniprot:Q83C83
Length = 443
Score = 121 (47.7 bits), Expect = 0.00025, P = 0.00025
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426
IVG PNVGKS+L N+L + + ++V +PG TRD I ++L+DT GL T
Sbjct: 7 IVGRPNVGKSTLFNYLTKSRAALVADVPGVTRDRQYGETTIDSQRLLLVDTGGLVDT 63
Score = 117 (46.2 bits), Expect = 0.00069, P = 0.00069
Identities = 28/60 (46%), Positives = 36/60 (60%)
Query: 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424
GIK ++G PNVGKS+L+N L ++ IV PGTTRD I L+DTAG+R
Sbjct: 175 GIKIAMIGRPNVGKSTLINRLLGEERVIVYDQPGTTRDSIYIPFARNDENYTLIDTAGIR 234
>TIGR_CMR|CBU_1245 [details] [associations]
symbol:CBU_1245 "GTP-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0005525 "GTP binding" evidence=ISS] HAMAP:MF_00195
InterPro:IPR005225 InterPro:IPR006073 InterPro:IPR016484
Pfam:PF01926 PIRSF:PIRSF006485 PRINTS:PR00326 GO:GO:0005525
TIGRFAMs:TIGR00231 GO:GO:0042254 EMBL:AE016828
GenomeReviews:AE016828_GR eggNOG:COG1160 KO:K03977
ProtClustDB:PRK00093 Gene3D:3.30.300.20 InterPro:IPR015946
PANTHER:PTHR11649:SF5 TIGRFAMs:TIGR03594 OMA:YLENTYR
HOGENOM:HOG000242862 RefSeq:NP_820240.1 ProteinModelPortal:Q83C83
PRIDE:Q83C83 GeneID:1209150 KEGG:cbu:CBU_1245 PATRIC:17931225
BioCyc:CBUR227377:GJ7S-1232-MONOMER Uniprot:Q83C83
Length = 443
Score = 121 (47.7 bits), Expect = 0.00025, P = 0.00025
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426
IVG PNVGKS+L N+L + + ++V +PG TRD I ++L+DT GL T
Sbjct: 7 IVGRPNVGKSTLFNYLTKSRAALVADVPGVTRDRQYGETTIDSQRLLLVDTGGLVDT 63
Score = 117 (46.2 bits), Expect = 0.00069, P = 0.00069
Identities = 28/60 (46%), Positives = 36/60 (60%)
Query: 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424
GIK ++G PNVGKS+L+N L ++ IV PGTTRD I L+DTAG+R
Sbjct: 175 GIKIAMIGRPNVGKSTLINRLLGEERVIVYDQPGTTRDSIYIPFARNDENYTLIDTAGIR 234
>UNIPROTKB|Q8EAH6 [details] [associations]
symbol:hydF "Fe hydrogenase maturation GTPase HydF"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR005225
InterPro:IPR006073 Pfam:PF01926 GO:GO:0005525 TIGRFAMs:TIGR00231
EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P25522
HOGENOM:HOG000287473 OMA:ILPQVQT InterPro:IPR023873
TIGRFAMs:TIGR03918 RefSeq:NP_719457.1 ProteinModelPortal:Q8EAH6
DNASU:1171565 GeneID:1171565 KEGG:son:SO_3926 PATRIC:23527532
ProtClustDB:CLSK2756122 Uniprot:Q8EAH6
Length = 394
Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00027
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY-PVILLDTAGL 423
+VG N GKSSL+N L +QISIV+ I GTT D + K ++ PV DTAG+
Sbjct: 7 LVGRRNSGKSSLLNMLAGQQISIVSDIKGTTTDAVAKAYELQPLGPVTFYDTAGI 61
>TIGR_CMR|SO_3926 [details] [associations]
symbol:SO_3926 "GTP-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0005525 "GTP binding" evidence=ISS]
InterPro:IPR005225 InterPro:IPR006073 Pfam:PF01926 GO:GO:0005525
TIGRFAMs:TIGR00231 EMBL:AE014299 GenomeReviews:AE014299_GR
HSSP:P25522 HOGENOM:HOG000287473 OMA:ILPQVQT InterPro:IPR023873
TIGRFAMs:TIGR03918 RefSeq:NP_719457.1 ProteinModelPortal:Q8EAH6
DNASU:1171565 GeneID:1171565 KEGG:son:SO_3926 PATRIC:23527532
ProtClustDB:CLSK2756122 Uniprot:Q8EAH6
Length = 394
Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00027
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY-PVILLDTAGL 423
+VG N GKSSL+N L +QISIV+ I GTT D + K ++ PV DTAG+
Sbjct: 7 LVGRRNSGKSSLLNMLAGQQISIVSDIKGTTTDAVAKAYELQPLGPVTFYDTAGI 61
>TAIR|locus:2154915 [details] [associations]
symbol:AT5G66470 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005525 "GTP binding"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0042793
"transcription from plastid promoter" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
HAMAP:MF_00367 InterPro:IPR004044 InterPro:IPR005225
InterPro:IPR005662 InterPro:IPR006073 Pfam:PF01926 Pfam:PF07650
PRINTS:PR00326 GO:GO:0005525 TIGRFAMs:TIGR00231 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009507 GO:GO:0003723
Gene3D:3.30.300.20 InterPro:IPR015946 HSSP:Q9X1F8 eggNOG:COG1159
HOGENOM:HOG000245596 KO:K03595 TIGRFAMs:TIGR00436 OMA:KVAKDWQ
EMBL:AY065195 EMBL:AY093245 IPI:IPI00521579 RefSeq:NP_201448.2
UniGene:At.28631 ProteinModelPortal:Q8VZ74 SMR:Q8VZ74 IntAct:Q8VZ74
STRING:Q8VZ74 PaxDb:Q8VZ74 PRIDE:Q8VZ74 EnsemblPlants:AT5G66470.1
GeneID:836779 KEGG:ath:AT5G66470 TAIR:At5g66470 InParanoid:Q8VZ74
PhylomeDB:Q8VZ74 ProtClustDB:CLSN2690267 ArrayExpress:Q8VZ74
Genevestigator:Q8VZ74 Uniprot:Q8VZ74
Length = 427
Score = 119 (46.9 bits), Expect = 0.00039, P = 0.00039
Identities = 47/146 (32%), Positives = 74/146 (50%)
Query: 284 VQLHGSIEKH--IELSN--KCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVRS 339
+Q H S + ELS+ K +R RS + + A +E + E +I+++ L ++
Sbjct: 43 LQAHNSTTSYGRTELSSSKKLWIRQRSFSEMEVEQAQLEDDEEQVEIDIVDEASLLSLSM 102
Query: 340 QVVQLHGSIEKHI--ELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIP 397
+ + ++ + EL + RSG +V VG PNVGKS+L N + ++ISIVT P
Sbjct: 103 KPDRNMALLDDYEMEELGHTPNTHHRSGYVAV-VGMPNVGKSTLSNQMIGQKISIVTDKP 161
Query: 398 GTTRDVIEKHLDIGGYPVILLDTAGL 423
TTR I Y +IL DT G+
Sbjct: 162 QTTRHRILGICSSPEYQMILYDTPGV 187
>UNIPROTKB|Q74AX3 [details] [associations]
symbol:era "GTPase Era" species:243231 "Geobacter
sulfurreducens PCA" [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_00367 InterPro:IPR003593 InterPro:IPR004044
InterPro:IPR005225 InterPro:IPR005662 InterPro:IPR006073
InterPro:IPR009019 Pfam:PF01926 Pfam:PF07650 PRINTS:PR00326
PROSITE:PS50823 SMART:SM00382 GO:GO:0005525 TIGRFAMs:TIGR00231
GO:GO:0005886 GO:GO:0005737 GO:GO:0003924 GO:GO:0006184
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0042274 GO:GO:0070181
Gene3D:3.30.300.20 InterPro:IPR015946 SUPFAM:SSF54814 KO:K03595
ProtClustDB:PRK00089 TIGRFAMs:TIGR00436 OMA:KVAKDWQ
HOGENOM:HOG000245597 RefSeq:NP_953275.1 ProteinModelPortal:Q74AX3
GeneID:2687595 KEGG:gsu:GSU2226 PATRIC:22027307
BioCyc:GSUL243231:GH27-2182-MONOMER Uniprot:Q74AX3
Length = 299
Score = 115 (45.5 bits), Expect = 0.00057, P = 0.00057
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAG 422
RSG S+I G PNVGKS+L+N + ++I I + P TTR+ I+ ++ G ++ +DT G
Sbjct: 8 RSGFVSII-GRPNVGKSTLLNRILGEKIVITSDKPQTTRNRIQGIHNLPGAQIVFIDTPG 66
Query: 423 LRTTTS 428
+ S
Sbjct: 67 IHHARS 72
>TIGR_CMR|GSU_2226 [details] [associations]
symbol:GSU_2226 "GTP-binding protein Era" species:243231
"Geobacter sulfurreducens PCA" [GO:0005525 "GTP binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_00367 InterPro:IPR003593 InterPro:IPR004044
InterPro:IPR005225 InterPro:IPR005662 InterPro:IPR006073
InterPro:IPR009019 Pfam:PF01926 Pfam:PF07650 PRINTS:PR00326
PROSITE:PS50823 SMART:SM00382 GO:GO:0005525 TIGRFAMs:TIGR00231
GO:GO:0005886 GO:GO:0005737 GO:GO:0003924 GO:GO:0006184
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0042274 GO:GO:0070181
Gene3D:3.30.300.20 InterPro:IPR015946 SUPFAM:SSF54814 KO:K03595
ProtClustDB:PRK00089 TIGRFAMs:TIGR00436 OMA:KVAKDWQ
HOGENOM:HOG000245597 RefSeq:NP_953275.1 ProteinModelPortal:Q74AX3
GeneID:2687595 KEGG:gsu:GSU2226 PATRIC:22027307
BioCyc:GSUL243231:GH27-2182-MONOMER Uniprot:Q74AX3
Length = 299
Score = 115 (45.5 bits), Expect = 0.00057, P = 0.00057
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAG 422
RSG S+I G PNVGKS+L+N + ++I I + P TTR+ I+ ++ G ++ +DT G
Sbjct: 8 RSGFVSII-GRPNVGKSTLLNRILGEKIVITSDKPQTTRNRIQGIHNLPGAQIVFIDTPG 66
Query: 423 LRTTTS 428
+ S
Sbjct: 67 IHHARS 72
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.396 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 445 433 0.00087 118 3 11 22 0.40 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 62
No. of states in DFA: 611 (65 KB)
Total size of DFA: 240 KB (2127 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 37.61u 0.08s 37.69t Elapsed: 00:00:55
Total cpu time: 37.63u 0.08s 37.71t Elapsed: 00:00:55
Start: Thu Aug 15 13:16:28 2013 End: Thu Aug 15 13:17:23 2013