RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1007
(445 letters)
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 305 bits (784), Expect = e-100
Identities = 109/337 (32%), Positives = 160/337 (47%), Gaps = 63/337 (18%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
+ V ++RVSG + +++ P ++V + I P + ++DE L L
Sbjct: 20 QQGSVGIVRVSGSQAIAIAQTLFDAPGKQVWESHRILYGYIRHPQTRQIVDEALLLLMKA 79
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P S+T ED EF HG I + +L + G R A+PGEF+ RAF N +LDLTQ E++
Sbjct: 80 PRSYTREDVVEFHCHGGIIAVQQVLQLCLES-GARLAQPGEFTLRAFLNGRLDLTQAESI 138
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DL+ A + Q AL ++G L + R L+ LA +EA IDF ED
Sbjct: 139 ADLVGARSPQAAQTALAGLQGKLAHPIRQLRANCLDILAEIEARIDFEED---------- 188
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+ +DE I + + +
Sbjct: 189 ------------------------------------------LPPLDDEAIISD-IENIA 205
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+++ QL + +K G +R+G+K IVG PNVGKSSL+N Q +IVT +PG
Sbjct: 206 AEISQLLATKDK--------GELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPG 257
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDV+E L +GG PV +LDTAG+R T+ D +E G
Sbjct: 258 TTRDVVESQLVVGGIPVQVLDTAGIRETS-DQVEKIG 293
Score = 61.4 bits (150), Expect = 2e-10
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 22 SHLAIKNTIFALSS--GHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIV 79
SH+AI TI A+++ + V ++RVSG + +++ P ++V + I
Sbjct: 2 SHMAITGTIAAIATAIVPQQGSVGIVRVSGSQAIAIAQTLFDAPGKQVWESHRILYGYIR 61
Query: 80 DPVSKVVLDEGLCLWFP 96
P ++ ++DE L L
Sbjct: 62 HPQTRQIVDEALLLLMK 78
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 303 bits (778), Expect = 6e-99
Identities = 100/341 (29%), Positives = 155/341 (45%), Gaps = 68/341 (19%)
Query: 99 GKCGVSVIRVSGPDTLNA----LKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCL 154
G ++++R+SG L+ + + + A + D E ++DE + L
Sbjct: 26 GVGALAIVRISGAGVLDLADRVFRKVHGSGKLAEAAGYTAHFGRLYDG--EEMVDEVIAL 83
Query: 155 WFPKPNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQ 214
F P SFT E EF HG V+ +L + G R AEPGEF++RAF N ++DL Q
Sbjct: 84 VFRAPRSFTAEQMVEFTCHGGPVVVGRVLRLMLDN-GCRLAEPGEFTRRAFLNGRIDLLQ 142
Query: 215 TEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDN 274
EA+G++I A TE + A+ QMKG+L R+ ++ S A +E +DFSE++
Sbjct: 143 AEAIGEMIHARTESAYRTAVSQMKGDLSVRLGGLREQLIRSCALIELELDFSEED----- 197
Query: 275 ILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNIL 334
++F + + +
Sbjct: 198 ----------------------------------------------VEFQSRDELTMQ-I 210
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
T+RS+V +L S + G + G+ +VI G+PN GKS+L+N L ++ +IV+
Sbjct: 211 ETLRSEVNRLIDSYQH--------GRIVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVS 262
Query: 395 SIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
+PGTTRD IE+ L DTAGLR + IE EG
Sbjct: 263 HMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG-EEIEHEG 302
Score = 56.4 bits (137), Expect = 9e-09
Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 23 HLAIKN-TIFALSSGHGKCGVSVIRVSGPDTLNA----LKSMACYPDQKVPKPRYASLRN 77
HL + I A+++ G ++++R+SG L+ + + A
Sbjct: 10 HLPVPGHPIAAIATPVGVGALAIVRISGAGVLDLADRVFRKVHGSGKLAEAAGYTAHFGR 69
Query: 78 IVDPVSKVVLDEGLCLWFP 96
+ D + ++DE + L F
Sbjct: 70 LYDG--EEMVDEVIALVFR 86
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 296 bits (761), Expect = 3e-96
Identities = 96/337 (28%), Positives = 168/337 (49%), Gaps = 67/337 (19%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK ++++R+SGPD+ ++ + PR A I + + +DE + +++
Sbjct: 44 GKGAIAILRLSGPDSWKIVQ--KHLRTRSKIVPRKAIHGWIHE--NGEDVDEVVVVFYKS 99
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNKLDLTQTEAL 218
P S+TGED E HG V+ +L K G R AEPGEF+KRAF N K+DLT EA+
Sbjct: 100 PKSYTGEDMVEVMCHGGPLVVKKLLDLFLKS-GARMAEPGEFTKRAFLNGKMDLTSAEAV 158
Query: 219 GDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
DLI+A++E + +L +KG L+ +++
Sbjct: 159 RDLIEAKSETSLKLSLRNLKGGLRDF-------------------------------VDS 187
Query: 279 VRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTVR 338
+R +++++ LA + +D+ ++ V
Sbjct: 188 LRRELIEV---------------------------LAEIRVELDYPDEIETNTG---EVV 217
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG 398
+++ ++ + + ++ ++ G+ + G++ VIVG+PNVGKS+L+N L + +IVT IPG
Sbjct: 218 TRLERIKEKLTEELKKADA-GILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPG 276
Query: 399 TTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
TTRDVI + + I G ++DTAG+R+ T+D++E G
Sbjct: 277 TTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLG 313
Score = 56.0 bits (136), Expect = 1e-08
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 16 FFSRRCSHLAIKN---------TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQK 66
R SH N TI A+++ GK ++++R+SGPD+ ++ +
Sbjct: 13 GLVPRGSHWGSPNSSSVDKLMDTIVAVATPPGKGAIAILRLSGPDSWKIVQ--KHLRTRS 70
Query: 67 VPKPRYASLRNIVDPVSKVVLDEGLCLWFP 96
PR A I + + +DE + +++
Sbjct: 71 KIVPRKAIHGWIHE--NGEDVDEVVVVFYK 98
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 121 bits (305), Expect = 8e-33
Identities = 38/71 (53%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Query: 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424
G+K VI G PN GKSSL+N L ++ +IVT I GTTRDV+ +H+ I G P+ ++DTAGLR
Sbjct: 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR 63
Query: 425 TTTSDIIETEG 435
SD +E G
Sbjct: 64 -EASDEVERIG 73
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 82.1 bits (204), Expect = 4e-17
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424
I+ ++G PNVGKSSL+N + ++ IV+++ GTTRD ++ +++DTAG+R
Sbjct: 176 IQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMR 234
Score = 70.2 bits (173), Expect = 3e-13
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
IVG PNVGKS++ N + ++ISIV PG TRD I + Y L+DT G+ +
Sbjct: 8 IVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI-DIGDE 66
Query: 430 IIETE 434
+
Sbjct: 67 PFLAQ 71
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 82.0 bits (203), Expect = 4e-17
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGG-YPVILLDTAGLR 424
+ G NVGKSS MN L + +SIV+ GTT D + K +++ PV L+DT GL
Sbjct: 39 VAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLD 94
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 81.8 bits (203), Expect = 5e-17
Identities = 30/60 (50%), Positives = 41/60 (68%)
Query: 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424
IK IVG PNVGKS+L N + K+ ++V+ IPGTTRD ++ + I G + +DTAGLR
Sbjct: 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLR 239
Score = 74.1 bits (183), Expect = 2e-14
Identities = 27/65 (41%), Positives = 38/65 (58%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
IVG PNVGKS+L N L +K+ +IV G TRD ++ ++ G L+DT G+ D
Sbjct: 6 IVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQD 65
Query: 430 IIETE 434
II +
Sbjct: 66 IISQK 70
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 76.8 bits (189), Expect = 6e-16
Identities = 21/86 (24%), Positives = 39/86 (45%)
Query: 349 EKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHL 408
EK IE K + + + +++G+ VGKSS +N L +Q+ V+ +
Sbjct: 20 EKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR 79
Query: 409 DIGGYPVILLDTAGLRTTTSDIIETE 434
+GG+ + ++DT GL +
Sbjct: 80 TMGGFTINIIDTPGLVEAGYVNHQAL 105
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 73.7 bits (182), Expect = 7e-16
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
IVG PNVGKSSL N L +K+ ++V +PG TRD+ E ++ +L+DT GL + D
Sbjct: 6 IVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGL--WSGD 63
Query: 430 IIETE 434
E +
Sbjct: 64 KWEKK 68
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 73.1 bits (179), Expect = 9e-15
Identities = 15/92 (16%), Positives = 35/92 (38%)
Query: 344 LHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDV 403
+ K +EL + + +++G+ VGKSS +N + +++ ++
Sbjct: 18 APATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRP 77
Query: 404 IEKHLDIGGYPVILLDTAGLRTTTSDIIETEG 435
+ G+ + ++DT GL
Sbjct: 78 VMVSRSRAGFTLNIIDTPGLIEGGYINDMALN 109
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 60.5 bits (148), Expect = 2e-10
Identities = 26/54 (48%), Positives = 32/54 (59%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGL 423
IVG PNVGKS+L+N L ++ISI + TTR I G Y I +DT GL
Sbjct: 13 IVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL 66
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 59.4 bits (145), Expect = 5e-10
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAG 422
SG + IVG+PNVGKS+L+N L +++ ++ P TTR + L G ++ +DT G
Sbjct: 6 YSGFVA-IVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPG 64
Query: 423 L 423
L
Sbjct: 65 L 65
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 56.9 bits (138), Expect = 9e-10
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAG 422
+ G NVGKS+L+ L K++ PG TR +I ++ + ++D G
Sbjct: 5 IFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKII--EIEWKNH--KIIDMPG 53
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 58.6 bits (143), Expect = 1e-09
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIE--KHLDIGGYPVILLDT 420
+ G + IVG+PNVGKS+L+N L ++SI++ GTTR + K++ +I LDT
Sbjct: 9 KVGYVA-IVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDT 66
Query: 421 AGL 423
G+
Sbjct: 67 PGI 69
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 55.0 bits (132), Expect = 2e-08
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 361 RIRSGIKSVIVGEPNVGKSSLMNFLC------QKQISIVTSIPGTTRDVIEKHLDIGGYP 414
R G +VG NVGKS+ +N + + + + PGTT D+I+ LD
Sbjct: 156 YYRGGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESS- 214
Query: 415 VILLDTAGLR 424
L DT G+
Sbjct: 215 --LYDTPGII 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 53.8 bits (130), Expect = 3e-08
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 340 QVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGT 399
Q+V I + + I+++I+G PNVGKS+L+N L +K I+ PG
Sbjct: 95 QIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGI 154
Query: 400 TRDVIEKHLDIGGYPVILLDTAG 422
T + + LLDT G
Sbjct: 155 TTSQQWVKVGKE---LELLDTPG 174
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 52.6 bits (127), Expect = 5e-08
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAG 422
+ +IVG PN GKS+++N L K+ S V + PG T+ + L+ G V +LDT G
Sbjct: 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENG---VKILDTPG 153
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 52.6 bits (126), Expect = 1e-07
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 361 RIRSGIKSVIVGEPNVGKSSLMNFL-----CQKQISIVTSIPGTTRDVIEKHLDIGGYPV 415
R R G +VG NVGKS+ +N + + + + PGTT D+IE L+ G
Sbjct: 158 RYREGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---A 214
Query: 416 ILLDTAGL 423
L DT G+
Sbjct: 215 TLYDTPGI 222
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 50.9 bits (121), Expect = 5e-07
Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 16/119 (13%)
Query: 324 SEDEIIEDNILNTVRSQVVQ-----LHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGK 378
+ +II ILN + ++ + +I ++ + + + + GE GK
Sbjct: 29 TGRKIISQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNV------AVTGETGSGK 82
Query: 379 SSLMNFLCQKQI----SIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIET 433
SS +N L + T + T + + V+ D G+ +T
Sbjct: 83 SSFINTLRGIGNEEEGAAKTGVVEVTMERH-PYKHPNIPNVVFWDLPGIGSTNFPPDTY 140
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 2e-06
Identities = 27/241 (11%), Positives = 74/241 (30%), Gaps = 59/241 (24%)
Query: 235 HQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHI 294
H M + +++ ++ + D + ++D + + + + HI
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKD---VQDMPKSILSKEEI-------DHI 54
Query: 295 ELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDN---ILNTVRSQVVQLHGSIEKH 351
+S + + E F E+ ++ N +++ ++++ Q +
Sbjct: 55 IMSKDAVSGTLR-LFWTLLSKQEEMVQKFVEE-VLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 352 IE----LSN-------------KCGVRIRSGIKS-------VIVGEPNVGKSSLMNFLCQ 387
IE L N + +++R + +I G GK+ + +C
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 388 KQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNL---LEKNNQQ 444
++ +D + + + ++E L ++ N
Sbjct: 173 S-------------YKVQCKMDFKIFWL----NLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 445 R 445
R
Sbjct: 216 R 216
Score = 36.4 bits (83), Expect = 0.021
Identities = 51/306 (16%), Positives = 95/306 (31%), Gaps = 100/306 (32%)
Query: 228 LQRQKALHQMKGNLKQLYSE--------------WRQLILESLAS--VEAYIDF------ 265
+ R + +++ L +L W + L+ S V+ +DF
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW--VALDVCLSYKVQCKMDFKIFWLN 188
Query: 266 -----SEDEIIEDNILNTVRSQVVQLHGSIEKHIE----LSNKCGVRIRSGIKS---VIC 313
S + ++E +L + Q+ S H + +R +KS C
Sbjct: 189 LKNCNSPETVLE--MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 314 LASVEAYI--DFSEDEIIE--DN---ILNTVRSQVV--QLHGSIEKHIELSN-------- 356
L + + + + IL T R + V L + HI L +
Sbjct: 247 L-----LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 357 -------KC-GVRI----RSGIK------SVIVGEPNVGKSSLMNFL---CQKQISIV-T 394
K R R + S+I G ++ N+ C K +I+ +
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 395 SI----PGTTRD------VIEKHLDIGGYPVILLDT--AGLRTTTSDIIETE---GNLLE 439
S+ P R V I P ILL + + ++ + +L+E
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHI---PTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 440 KNNQQR 445
K ++
Sbjct: 419 KQPKES 424
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 45.8 bits (108), Expect = 9e-06
Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 7/99 (7%)
Query: 343 QLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIV-TSIPGTTR 401
H S +++ + R+ ++VG GKS+ N + ++ TR
Sbjct: 5 HHHSSGRENLYFQGESTRRL------ILVGRTGAGKSATGNSILGQRRFFSRLGATSVTR 58
Query: 402 DVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLEK 440
V ++DT + ++ +
Sbjct: 59 ACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 44.6 bits (105), Expect = 2e-05
Identities = 19/98 (19%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 345 HGSIEKHIELSNKCGVRI--RSGIKSVIVGEPNVGKSSLMNFLCQKQISIV-TSIPGTTR 401
H S +++ G + S ++ V+VG+ GKS+ N + +++ T+ T+
Sbjct: 7 HSSGRENLYFQGGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITK 66
Query: 402 DVIEKHLDIGGYPVILLDTAGLRTTTSDIIETEGNLLE 439
++ ++++DT G+ T ET ++
Sbjct: 67 KCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIR 104
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 3e-05
Identities = 66/412 (16%), Positives = 116/412 (28%), Gaps = 171/412 (41%)
Query: 47 VSGPDTLNALKSMACYP-DQKVPKPRYASLRNIVDPVSKVVLDEGLCLWFPRHGKCGVSV 105
+S P L + +A Y K+ LR+ + + +GL V+
Sbjct: 236 ISCP--LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS--QGL-----------VTA 280
Query: 106 IRVSGPDT-----LNALKSMA-----------CYPDQKVS-------------KPRY-AS 135
+ ++ D+ ++ K++ YP+ + P S
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 136 LRNIVDPVSEVVLDEGLCLWFPKPNSFTGEDCCEFQVHGSIAVINA-----ILG---ALT 187
+ N+ + ++ K NS QV I+++N + G +L
Sbjct: 341 ISNLTQEQVQDYVN--------KTNSHLPAG---KQVE--ISLVNGAKNLVVSGPPQSLY 387
Query: 188 KL-PGLR--PAEPG------EFSKRA------F------FNNKLDLTQTEAL--GDLIQA 224
L LR A G FS+R F F++ L L L DL++
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL-LVPASDLINKDLVKN 446
Query: 225 ETELQRQKAL-----HQMKG-NLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNT 278
K + G +L+ L I E + D II
Sbjct: 447 NVSF-NAKDIQIPVYDTFDGSDLRVLSGS----ISERIV----------DCIIRL----P 487
Query: 279 VR-SQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEIIEDNILNTV 337
V+ Q + HI +DF + L +
Sbjct: 488 VKWETTTQFKAT---HI--------------------------LDFGPGGA---SGLGVL 515
Query: 338 RSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQ 389
+ G+ GVR+ ++ G ++ F KQ
Sbjct: 516 THRNKD--GT-----------GVRV------IVAGTLDINPDDDYGF---KQ 545
Score = 43.1 bits (101), Expect = 2e-04
Identities = 60/441 (13%), Positives = 119/441 (26%), Gaps = 181/441 (41%)
Query: 93 LWFPRHGKCGVSVIRVSGPDTLNALKSMACYPDQKVSKP----RYAS-LRNIVDPVSEVV 147
+F S ++ L D+ + ++ + ++V+P
Sbjct: 26 SFFI------ASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ 79
Query: 148 LDEGLCLWFPKPNSFT-----GEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSK 202
D+ L L F G D +H ++A KL + +
Sbjct: 80 FDQVLNLCL---TEFENCYLEGND-----IH-ALAA---------KLLQENDTTLVKTKE 121
Query: 203 --RAFF------NNKLDLTQTEALGDLIQAETELQRQKA-LH-----QMKGN-------L 241
+ + D AL +A + A L Q GN L
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSAL---FRA---VGEGNAQLVAIFGGQ--GNTDDYFEEL 173
Query: 242 KQLYSEWRQLI----------LESLASVEA-----Y---IDF-----SEDEIIEDNILNT 278
+ LY + L+ L L + ++ + + + L +
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 279 VR-S----QVVQL-------------HGSIEKHIELSNKCGVRIRS-GIKSVICLASVEA 319
+ S V+QL G + ++ G S G+ + + +A ++
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL-----KGATGHSQGLVTAVAIAETDS 288
Query: 320 YIDFSEDEIIEDNILNT--------VRSQVVQLHGSIEKHIELSNKCGVRIRSGI--KSV 369
+ F ++ VR + + + + I S+
Sbjct: 289 WESF------FVSVRKAITVLFFIGVRCY--EAYPNTS------------LPPSILEDSL 328
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLD-------------------- 409
E G S M L SI T++ ++ +++
Sbjct: 329 ENNE---GVPSPM--L---------SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 410 ----IGGYPVIL--LDTAGLR 424
+ G P L L+ LR
Sbjct: 375 KNLVVSGPPQSLYGLNLT-LR 394
Score = 33.5 bits (76), Expect = 0.19
Identities = 30/209 (14%), Positives = 67/209 (32%), Gaps = 62/209 (29%)
Query: 278 TVRSQVVQLHGSIEKHIELSNKCGV---RIRSG-----------------IKSVICLAS- 316
+ R + HGS+E + + +++ + L
Sbjct: 5 STRPLTLS-HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 317 ----VEAYIDFSE----DEII-------EDNIL--NTVRSQVVQLHGSIEKHIELSNKCG 359
V + ++ S+ D+++ E+ L N + + +L + + K
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV---KTK 120
Query: 360 VRIRSGIKSVIVGE---PNVGKSSLMNFLCQKQISIVTSIPG--TTRDVIE--KHL-DIG 411
I++ I + I+ + S+L + + +V G T D E + L
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT- 179
Query: 412 GYPVILLDTAGLRTTTSDIIETEGNLLEK 440
Y V++ D+I+ L +
Sbjct: 180 -YHVLV----------GDLIKFSAETLSE 197
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 43.1 bits (101), Expect = 9e-05
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQISIVTSIPGT-TRDVIEKHLDIGGYPVILLDTAGLRTTT 427
++VG+ GKS+ N + +KQ T T+ + G ++++DT + +
Sbjct: 26 ILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWK 85
Query: 428 SD 429
Sbjct: 86 DH 87
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 42.6 bits (101), Expect = 2e-04
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 12/68 (17%)
Query: 361 RIRSGIKSV-IVGEPNVGKSSLMNFLCQKQISI-----VTSIPGTTRDVIEKHLDIGGYP 414
R+ I S+ IVG N GK+SL N L + T P + I
Sbjct: 174 NKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSP-KRY-----AIPINNRK 227
Query: 415 VILLDTAG 422
++L+DT G
Sbjct: 228 IMLVDTVG 235
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 39.4 bits (93), Expect = 6e-04
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
K ++VGE VGKS+L Q + D E+ + + V L D
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQG-DHAHEMENSEDTYERRIMVDKEEVTLIVYDIWE 60
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 39.4 bits (92), Expect = 0.001
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQISI----VTSIPGTTRDVIEKHLDIGGYPVILLDTAGL 423
++ G PNVGKSS MN +S V S TT+++ H D ++DT GL
Sbjct: 33 ILSGAPNVGKSSFMN-----IVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGL 86
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Length = 396
Score = 39.4 bits (93), Expect = 0.002
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 361 RIRSGIKSVIVGEPNVGKSSLMNFLCQKQI 390
R + +K IVG PNVGKS+ N L Q
Sbjct: 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQA 47
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 38.4 bits (90), Expect = 0.002
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
K ++VGE VGKS+L Q P D E+ + + V L D
Sbjct: 25 KVMLVGESGVGKSTLAGTFGGLQ-GDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWE 81
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 37.9 bits (89), Expect = 0.002
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 371 VGEPNVGKSSLMNFLCQKQISIVTSIPGTTR 401
VG NVGKSSL+N L ++I+ V+ PG TR
Sbjct: 29 VGRSNVGKSSLLNALFNRKIAFVSKTPGKTR 59
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
GTP1OBG, PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 38.6 bits (91), Expect = 0.003
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 361 RIRSGIKSVIVGEPNVGKSSLMNFLCQKQI 390
R + +K+ IVG PNVGKS+ + + +
Sbjct: 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVL 45
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 37.6 bits (88), Expect = 0.003
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
++ ++G+ GKSSL++ T + +K + + G ++ + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQ--VLEK-TESEQYKKEMLVDGQTHLVLIREEAG 63
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 37.5 bits (88), Expect = 0.003
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
+K IVG + GKS+L++ S +K + + G +L D G
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEES---PEGGRFKKEIVVDGQSYLLLIRDEGG 76
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 37.6 bits (88), Expect = 0.005
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 366 IKSVIVGEPNVGKSSLMNFLC---QKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAG 422
+K + G PNVGK+SL N L Q V + PG T + E GY + L+D G
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQY----VANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
Query: 423 ---LRTTTSD 429
L ++ D
Sbjct: 62 TYSLGYSSID 71
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 37.3 bits (87), Expect = 0.005
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL-----LDTA 421
+ V++GE VGKS+L N S+ + D E+ L + G + +
Sbjct: 39 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98
Query: 422 G 422
G
Sbjct: 99 G 99
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 36.3 bits (85), Expect = 0.007
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
K +++G P VGKS+L + ++ + + G L D
Sbjct: 4 KVLLLGAPGVGKSALARIFGGVEDG--PEAE-AAGHTYDRSIVVDGEEASLMVYDIWE 58
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 36.6 bits (85), Expect = 0.008
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTR-DVIEKHLDIGGYPVILL-----D 419
+K +IVG GK++L+ L + + S + T DV + + I L D
Sbjct: 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62
Query: 420 TAG---LRTTTS 428
AG +T
Sbjct: 63 FAGREEFYSTHP 74
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 36.4 bits (85), Expect = 0.009
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
+K I G VGKS+L+ K+ I P T I V + LDTAG
Sbjct: 29 VKLAIFGRAGVGKSALVVRFLTKRF-IWEYDP-TLESTYRHQATIDDEVVSMEILDTAG 85
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 37.1 bits (86), Expect = 0.009
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTS 428
VI G PNVGKS+L+ L + I + P TTR + + G + ++DT GL
Sbjct: 171 VIAGHPNVGKSTLLKALTTAKPEIASY-PFTTRGINVGQFEDGYFRYQIIDTPGL----- 224
Query: 429 DIIETEGNLLEKNN 442
+ + E+N
Sbjct: 225 ----LDRPISERNE 234
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 36.4 bits (85), Expect = 0.009
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
+ I+G GKS+L K+ I P D + PV L +DTA
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRF-ISEYDP-NLEDTYSSEETVDHQPVHLRVMDTAD 78
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 36.5 bits (85), Expect = 0.010
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 371 VGEPNVGKSSLMNFLC-QKQISIVTSIPGTTR 401
G N GKS+ +N LC QK+++ + PG T+
Sbjct: 35 AGRSNAGKSTAINVLCNQKRLAFASKTPGRTQ 66
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 36.5 bits (85), Expect = 0.010
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 371 VGEPNVGKSSLMNFLC-QKQISIVTSIPGTTR 401
G N GKSS +N L QK ++ + PG T+
Sbjct: 32 AGRSNAGKSSALNTLTNQKSLARTSKTPGRTQ 63
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 36.1 bits (84), Expect = 0.010
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL-----LDTA 421
+ V++GE VGKS+L N S+ + D E+ L + G + +
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 422 G 422
G
Sbjct: 68 G 68
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 35.5 bits (83), Expect = 0.011
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 366 IKSVIVGEPNVGKSSLMNFLC---QKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAG 422
+ ++G PNVGKS++ N L + + PG T + E + G ++D G
Sbjct: 4 YEIALIGNPNVGKSTIFNALTGENVY----IGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 59
Query: 423 ---LRTTTSD 429
L + D
Sbjct: 60 VYSLTANSID 69
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 36.0 bits (84), Expect = 0.011
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 371 VGEPNVGKSSLMNFLC-QKQISIVTSIPGTTR 401
G NVGKSS +N L +K ++ +S PG T+
Sbjct: 29 AGRSNVGKSSFINSLINRKNLARTSSKPGKTQ 60
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 36.1 bits (84), Expect = 0.014
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 370 IVGEPNVGKSSLMNFLC---QKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAG---L 423
+VG PNVGK+++ N L Q V + PG T + E ++ +++D G L
Sbjct: 8 LVGNPNVGKTTIFNALTGLRQH----VGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSL 63
Query: 424 RTTTSD 429
+ D
Sbjct: 64 TAHSID 69
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 35.6 bits (83), Expect = 0.016
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 366 IKSVIVGEPNVGKSSLMNFLC---QKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAG 422
+ ++G PNVGKS++ N L + + PG T + E + G ++D G
Sbjct: 8 YEIALIGNPNVGKSTIFNALTGENVY----IGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 63
Query: 423 ---LRTTTSD 429
L + D
Sbjct: 64 VYSLTANSID 73
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 34.8 bits (81), Expect = 0.020
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
K V+VG VGKS+L L Q + P T D K + I G +L LDTAG
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHF-VDECDP-TIEDSYRKQVVIDGETCLLDILDTAG 60
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 35.9 bits (82), Expect = 0.020
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
+VGE +GKS+L+N L + + + IE+ + I V + + T
Sbjct: 23 VVGESGLGKSTLINSLFLTDL-YPERVISGAAEKIERTVQIEASTVEIEERGVKLRLT-- 79
Query: 430 IIETEGNLLEKNNQQ 444
+++T G N +
Sbjct: 80 VVDTPGYGDAINCRD 94
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 35.1 bits (80), Expect = 0.030
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
+VGE +GKS+L+N L + + I+K + + V++ + T
Sbjct: 13 VVGESGLGKSTLINSLFLT--DLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLT-- 68
Query: 430 IIETEGNLLEKNNQQ 444
I++T G +N
Sbjct: 69 IVDTPGFGDAVDNSN 83
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake,
cell inner membrane, cell GTP-binding, ION transport,
membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 35.0 bits (81), Expect = 0.032
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 366 IKSVIVGEPNVGKSSLMNFLC---QKQISIVTSIPGTTRDVIEKHLDIGGYPVILLD 419
++++G PN GK++L N L Q+ V + PG T + +G + + + D
Sbjct: 2 THALLIGNPNCGKTTLFNALTNANQR----VGNWPGVTVEKKTGEFLLGEHLIEITD 54
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 35.0 bits (81), Expect = 0.034
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 366 IKSVIVGEPNVGKSSLMNFLC---QKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAG 422
+ ++G PN GK++L N L Q+ V + G T + E + V L+D G
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSRQR----VGNWAGVTVERKEGQFSTTDHQVTLVDLPG 59
Query: 423 ---LRTTTSDIIETE 434
L T +S E
Sbjct: 60 TYSLTTISSQTSLDE 74
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 34.4 bits (80), Expect = 0.035
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
K ++VG VGKS+L + + P T D K + + G V + LDTAG
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEF-VEDYEP-TKADSYRKKVVLDGEEVQIDILDTAG 61
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 34.4 bits (80), Expect = 0.035
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
K V+VG+ VGKS+L QK + P T D KH +I IL LDTAG
Sbjct: 20 KLVVVGDGGVGKSALTIQFFQKIF-VDDYDP-TIEDSYLKHTEIDNQWAILDVLDTAG 75
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 34.1 bits (79), Expect = 0.049
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
K ++VG VGKS+L + + P T D K + + G V + LDTAG
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEF-VEDYEP-TKADSYRKKVVLDGEEVQIDILDTAG 71
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.050
Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 12/39 (30%)
Query: 229 QRQKALHQMKGNLKQLYSEWRQLILES---LASVEAYID 264
++Q AL +++ +LK LY++ +S LA ++A ++
Sbjct: 18 EKQ-ALKKLQASLK-LYAD------DSAPALA-IKATME 47
Score = 29.1 bits (64), Expect = 1.6
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 2 EKKS-KKAAKEKAVIFFSRRCS-HLAIKNTI 30
EK++ KK + ++ ++ + LAIK T+
Sbjct: 18 EKQALKKL--QASLKLYADDSAPALAIKATM 46
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 33.7 bits (78), Expect = 0.051
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG-- 422
+ V++G+P VGK+SL + KQ DV E+ L + G L +DT
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQ--ERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAE 63
Query: 423 -LRTTTS 428
L + S
Sbjct: 64 KLDKSWS 70
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 33.9 bits (78), Expect = 0.052
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
IK V VG+ VGK+ L+ +P T D ++ + G V L DTAG
Sbjct: 9 IKCVTVGDGAVGKTCLLISYTSNTFPTD-YVP-TVFDNFSANVVVNGATVNLGLWDTAG 65
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 34.0 bits (79), Expect = 0.052
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
K V+VG VGKS+L Q + P T D K + G P L LDTAG
Sbjct: 11 KLVVVGGGGVGKSALTIQFIQSYF-VSDYDP-TIEDSYTKICSVDGIPARLDILDTAG 66
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 34.0 bits (78), Expect = 0.055
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPV--ILLDTAG 422
K V+VG+ GK+ L+ + + V +P T + +++ G V L DTAG
Sbjct: 26 KKLVVVGDGACGKTCLLIVFSKDEFPEV-YVP-TVFENYVADIEVDGKQVELALWDTAG 82
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics,
structure 2 function project, S2F, unknown function;
2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Length = 363
Score = 34.3 bits (80), Expect = 0.070
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 10/34 (29%)
Query: 357 KCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQI 390
KCG IVG PNVGKS+L N L + I
Sbjct: 4 KCG----------IVGLPNVGKSTLFNALTKAGI 27
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 34.6 bits (78), Expect = 0.072
Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 10/104 (9%)
Query: 339 SQVVQLHGSIEKHIELSNKCGVRIRSG-IKSVIVGEPNVGKSSLMNFLCQKQI------- 390
S+E+ IE ++ G + +++G+ GKS+ +N L + +
Sbjct: 42 GDSSSGKLSLERDIEDITIASKNLQQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNP 101
Query: 391 --SIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIE 432
+++T + + H + G P L T D E
Sbjct: 102 CTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 33.3 bits (77), Expect = 0.074
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
K ++VG VGKS+L + + P T D K + + G V + LDTAG
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEF-VEDYEP-TKADSYRKKVVLDGEEVQIDILDTAG 75
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 33.6 bits (77), Expect = 0.075
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILL--DTAG 422
+K V+VG+ GK+SL+ P T + +L + G PV L DTAG
Sbjct: 35 VKVVLVGDGGCGKTSLLMVFADGAFPES-YTP-TVFERYMVNLQVKGKPVHLHIWDTAG 91
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 33.4 bits (77), Expect = 0.083
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTS-IPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
+ V+ G VGKSSL+ + + IP T D + + L DT G
Sbjct: 10 RVVVFGAGGVGKSSLVLRFVKGT--FRDTYIP-TIEDTYRQVISCDKSVCTLQITDTTG 65
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 33.3 bits (77), Expect = 0.095
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTS-IPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
K V+VG VGKS+L L Q V P T D K + I G +L LDTAG
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNH--FVDEYDP-TIEDSYRKQVVIDGETCLLDILDTAG 61
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 33.0 bits (76), Expect = 0.11
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTS-IPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
K V+VG VGKS+L L Q V P T D K + I G +L LDTAG
Sbjct: 23 KLVVVGAGGVGKSALTIQLIQNH--FVDEYDP-TIEDSYRKQVVIDGETCLLDILDTAG 78
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 32.8 bits (76), Expect = 0.11
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTS-IPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
K V++G VGKS+L + P T D K +++ P +L LDTAG
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTGT--FIEKYDP-TIEDFYRKEIEVDSSPSVLEILDTAG 60
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 32.9 bits (76), Expect = 0.11
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTS-IPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
+ + G VGKSSL+ + S IP T D + + L DT G
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGT--FRESYIP-TVEDTYRQVISCDKSICTLQITDTTG 60
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 33.2 bits (76), Expect = 0.12
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPV--ILLDTAG 422
IK V+VG+ VGK+ L+ IP T D ++ + G PV L DTAG
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEY-IP-TVFDNYSANVMVDGKPVNLGLWDTAG 87
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 32.9 bits (76), Expect = 0.12
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
K I+G +VGKSSL + Q + + P T + K + + G L +DTAG
Sbjct: 7 RKIAILGYRSVGKSSLTIQFVEGQF-VDSYDP-TIENTFTKLITVNGQEYHLQLVDTAG 63
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 32.8 bits (75), Expect = 0.12
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILL--DTAG 422
K V+VG+ GK++L++ + +P T + +I + L DT+G
Sbjct: 8 CKIVVVGDSQCGKTALLHVFAKDCFPENY-VP-TVFENYTASFEIDTQRIELSLWDTSG 64
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 32.9 bits (76), Expect = 0.13
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
K VI+G VGK+SL + + + P T + K + +G L +DTAG
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEF-SEGYDP-TVENTYSKIVTLGKDEFHLHLVDTAG 81
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio
project on protein structural and functional analyses;
HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Length = 368
Score = 33.2 bits (77), Expect = 0.13
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 370 IVGEPNVGKSSLMNFLCQKQI 390
IVG PNVGKS+L N L +
Sbjct: 6 IVGLPNVGKSTLFNALTRANA 26
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 33.0 bits (76), Expect = 0.17
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 17/68 (25%)
Query: 368 SVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEK-----------HLDIGGYPVI 416
S+ G+ VGKSSL+N L Q I+T +V H GG
Sbjct: 218 SIFAGQSGVGKSSLLNALLGLQNEILT---NDVSNVSGLGQHTTTAARLYHFPHGGD--- 271
Query: 417 LLDTAGLR 424
++D+ G+R
Sbjct: 272 VIDSPGVR 279
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 33.0 bits (76), Expect = 0.21
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISI 392
+VG+PNVGKS+ + + I
Sbjct: 5 VVGKPNVGKSTFFSAATLVDVEI 27
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 32.3 bits (74), Expect = 0.22
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
IK V VG+ VGK+ ++ + IP T D ++ + G V L DTAG
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTD-YIP-TVFDNFSANVAVDGQIVNLGLWDTAG 66
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 32.4 bits (73), Expect = 0.26
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKH---LDIGGYPVIL--LDTAGL 423
VGE +GKS+LM+ L + + ++ + L + L + T G
Sbjct: 47 CVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGF 105
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 32.3 bits (73), Expect = 0.27
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY 413
+++G GKSS+ + + + T G T DV HL G
Sbjct: 7 LLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGN 51
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 31.4 bits (72), Expect = 0.32
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG- 422
K ++VG+ VGK+ L+ T I D K LD+ G V L DTAG
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 423 --LRTTTS 428
R+ T
Sbjct: 71 ERFRSVTH 78
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 31.8 bits (73), Expect = 0.35
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 368 SVIVGEPNVGKSSLMNFLCQKQI---SIVTSIP-G--TTRDVIEKHLDIGGYPVILLDTA 421
++ G VGKSS+++ L +++ + G TT V G + + DT
Sbjct: 168 CILAGPSGVGKSSILSRLTGEELRTQEVSEKTERGRHTTTGVRLIPFGKGSF---VGDTP 224
Query: 422 GLR 424
G
Sbjct: 225 GFS 227
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 31.6 bits (72), Expect = 0.36
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILL--DTAG 422
K VIVG+ GK+ L+ + Q V +P T + +++ G V L DTAG
Sbjct: 26 KKLVIVGDGACGKTCLLIVFSKDQFPEV-YVP-TVFENYIADIEVDGKQVELALWDTAG 82
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 31.3 bits (72), Expect = 0.36
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTS-IPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
K V++G VGKS+L Q V P T D K +++ +L LDTAG
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGI--FVEKYDP-TIEDSYRKQVEVDCQQCMLEILDTAG 60
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 31.4 bits (72), Expect = 0.40
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQIS-IVTSIPGTTR 401
V++G VG+S + N L + V +P TTR
Sbjct: 23 VLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTR 56
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 31.0 bits (71), Expect = 0.43
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILL---DTAG 422
+K +I+G+ VGK+SLM+ + S D + K + + G V + DTAG
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQ-QYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 423 ---LRTTTS 428
++
Sbjct: 68 QERFQSLGV 76
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 31.2 bits (71), Expect = 0.49
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILL--DTAG 422
+K V+VG+ VGK+ L+ + +I +P T + + IL DTAG
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTA-YVP-TVFENFSHVMKYKNEEFILHLWDTAG 80
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 30.9 bits (70), Expect = 0.52
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
+K V+VG+ VGK+ L+ T D + +GG +L DTAG
Sbjct: 19 LKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAG 75
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 31.1 bits (71), Expect = 0.58
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 366 IKSVIVGEPNVGKSSLMNFL 385
+ ++G PN GK+SL N +
Sbjct: 4 TEIALIGNPNSGKTSLFNLI 23
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 30.9 bits (70), Expect = 0.58
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILL--DTAG 422
K V+VG+ GK++L++ + +P T + +I + L DT+G
Sbjct: 29 CKIVVVGDSQCGKTALLHVFAKDCFPEN-YVP-TVFENYTASFEIDTQRIELSLWDTSG 85
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 30.5 bits (70), Expect = 0.58
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQIS-IVTSIPGTTR 401
V++G VG+ + N L K IP TTR
Sbjct: 9 VLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTR 42
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 30.6 bits (70), Expect = 0.71
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 367 KSVIVGEPNVGKSSLMN 383
K +++G+ VGKSSLMN
Sbjct: 9 KVILLGDGGVGKSSLMN 25
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 30.5 bits (69), Expect = 0.75
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
+K V+VG+ VGK+SL+ IP T D + + G PV L DTAG
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTE-YIP-TAFDNFSAVVSVDGRPVRLQLCDTAG 77
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 30.6 bits (69), Expect = 0.77
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 345 HGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVI 404
H S +++ + + + K V+VG+ GK++++ L + T +P T +
Sbjct: 7 HSSGRENLYFQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPE-TYVP-TVFENY 64
Query: 405 EKHLDIGGYPVILL--DTAG 422
L+ V L DT+G
Sbjct: 65 TACLETEEQRVELSLWDTSG 84
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 30.3 bits (68), Expect = 0.84
Identities = 8/48 (16%), Positives = 19/48 (39%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY 413
+ +++G GKSS+ + K T +T + + + +
Sbjct: 21 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSF 68
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 30.3 bits (69), Expect = 0.84
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT-RDVIEKHLDIGGYPVIL----LDTA 421
K +VGE VGKS+L++ K + T+ +V+ + I V + LDTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 422 G 422
G
Sbjct: 82 G 82
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 30.6 bits (70), Expect = 0.98
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 18/68 (26%)
Query: 368 SVIVGEPNVGKSSLMNFLCQKQISIVTSIPG-----------TTRDVIEKHLDIGGYPVI 416
S + G VGKSSL+N + + + TT D GGY
Sbjct: 172 STMAGLSGVGKSSLLNAI-NPGLKLRV---SEVSEKLQRGRHTTTTAQLLKFDFGGY--- 224
Query: 417 LLDTAGLR 424
++DT G
Sbjct: 225 VVDTPGFA 232
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 30.3 bits (69), Expect = 1.0
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 366 IKSVIVGEPNVGKSSLMN 383
+K +I+G+ VGK+SLMN
Sbjct: 9 LKVIILGDSGVGKTSLMN 26
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 29.9 bits (68), Expect = 1.1
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILL--DTAG- 422
K V+ G+ VGKSS + LC+ + D K L + G +L DTAG
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFR-ENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87
Query: 423 --LRTTTS 428
R+
Sbjct: 88 ERFRSIAK 95
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 30.4 bits (68), Expect = 1.2
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY-PVILLD 419
++VG P GKS++ LCQ I + P++ L
Sbjct: 28 ILVGSPGSGKSTIAEELCQI---INEKYHTFLSEHPNVIEVNDRLKPMVNLV 76
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 30.3 bits (69), Expect = 1.5
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 68 PKPRYASLRNIVDPVSKVVLDEGLCLW 94
YA LR+ P+ +V L +G W
Sbjct: 26 LPDGYAQLRDTPGPLHRVTLYDGRQAW 52
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 30.0 bits (67), Expect = 1.5
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLD 409
+++G GKSS+ + + T +T + +H
Sbjct: 3 LLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS 43
>1rdu_A Conserved hypothetical protein; atnos, candid, structural genomics,
joint center for structu genomics, JCSG, protein
structure initiative; NMR {Thermotoga maritima} SCOP:
c.55.5.1
Length = 116
Score = 28.6 bits (64), Expect = 1.5
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 329 IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQK 388
E + V + + HG+ K ++ GV +I NVG+++ L
Sbjct: 32 TESGNVEVVENTIADAHGTGPKVVQSLVSKGVEY------LIAS--NVGRNA-FETLKAA 82
Query: 389 QISIVTSIPGTTRDVIEKHLD 409
+ + GT ++ I+ +
Sbjct: 83 GVKVYRFEGGTVQEAIDAFSE 103
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 29.3 bits (66), Expect = 1.5
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILL--DTAG 422
IK V+VG+ VGK+ L+ T D ++ + G PV L DTAG
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 62
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 29.5 bits (67), Expect = 1.6
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILL--DTAG-- 422
K +I+G+ VGKS L++ +K+ + + +++ G + L DTAG
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMA-DCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 423 -LRTTTS 428
R T
Sbjct: 76 RFRAVTR 82
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 29.4 bits (67), Expect = 1.6
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILL--DTAG- 422
IK V+VG VGKSS++ C+ + D +E+ + + V L+ DTAG
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTK-DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64
Query: 423 --LRTTTS 428
T
Sbjct: 65 EEFDAITK 72
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 29.9 bits (66), Expect = 1.9
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 370 IVGEPNVGKSSLMNFLCQKQI--SIVTSIPGTTRDV---IEKHLDIGGYPVILLDTAGL 423
IVG GKS LMN L K+ S+ +++ T+ + H G+ ++LLDT GL
Sbjct: 43 IVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGL 101
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 29.1 bits (66), Expect = 2.1
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILL--DTAG-- 422
K +++G GKS L++ + + S + + +++GG V L DTAG
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQ-DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 423 -LRTTTS 428
R+ T
Sbjct: 86 RFRSVTR 92
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 29.1 bits (66), Expect = 2.2
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILL--DTAG-- 422
K V++G+ VGKS+L++ + + ++ S + + + + G + DTAG
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 423 -LRTTTS 428
R TS
Sbjct: 90 RYRAITS 96
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 29.0 bits (66), Expect = 2.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 376 VGKSSLMNFLCQKQISIVTSIPGTTR 401
GK+SL+ L + I SI TTR
Sbjct: 18 AGKTSLVRALVKALAEIKISISHTTR 43
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 28.8 bits (65), Expect = 2.6
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILL--DTAG-- 422
K V++G+ VGKS+L++ + + + + S + + + + G + DTAG
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 423 -LRTTTS 428
R TS
Sbjct: 66 RYRRITS 72
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 28.7 bits (65), Expect = 2.8
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG- 422
K +++G +VGK+S + + + D K + + L DTAG
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFT-PAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQ 81
Query: 423 --LRTTTS 428
RT T+
Sbjct: 82 ERYRTITT 89
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 28.8 bits (65), Expect = 2.8
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 16/72 (22%)
Query: 367 KSVIVGEPNVGKSSLMN-FL----CQKQISIVTSIPGTTRDVIEKHLDIGGYPVILL--D 419
K V+VG+ GK++ + L +K ++ + G +V P+ D
Sbjct: 17 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL----GV--EVHPLVFHTNRGPIKFNVWD 70
Query: 420 TAG---LRTTTS 428
TAG
Sbjct: 71 TAGQEKFGGLRD 82
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 28.5 bits (63), Expect = 3.0
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQISIVTSIPG-TTRDVIEKHLDIGGYPVILLDTAGL 423
+ G P VGK++L++ + S + G T +V + IG V L T G
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGP 60
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family;
helicase, MCM homolog, DNA replication, ATP-binding,
DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Length = 506
Score = 29.0 bits (65), Expect = 3.0
Identities = 15/141 (10%), Positives = 36/141 (25%), Gaps = 20/141 (14%)
Query: 280 RSQVVQLHGSIEKHIELSNKC--GVRI------RSGIKSVICLASVEAYIDFSEDEIIED 331
+V + ++ G+R+ RS + + + + D +
Sbjct: 135 EHAIVDTGSELVAVRLHGHRLGPGLRVEILGIVRSATLDALEVHKKDPIPEVHPDPAELE 194
Query: 332 NILNTVRSQVVQL----------HGSIEKHIELSNKCGV-RIRSGIKSVIVGEPNVGKSS 380
+ + K + L V + + ++ G P V
Sbjct: 195 EFRELADKDPLTTFARAIAPLPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVVCSEI 254
Query: 381 LMNFLCQ-KQISIVTSIPGTT 400
L + L + + T
Sbjct: 255 LHHVLDHLAPRGVYVDLRRTE 275
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 28.7 bits (65), Expect = 3.1
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILL--DTAG-- 422
K +++G GKS L++ +K+ S + K +++GG V L DTAG
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKD-DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 423 -LRTTTS 428
R+ T
Sbjct: 71 RFRSVTR 77
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 28.3 bits (64), Expect = 3.2
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 366 IKSVIVGEPNVGKSSLM 382
+K V++G+ GK+SL
Sbjct: 7 LKIVVLGDGASGKTSLT 23
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 29.1 bits (66), Expect = 3.2
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 8/26 (30%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTS 395
+VG PN GKSSL ++ +T
Sbjct: 162 LVGYPNAGKSSL--------LAAMTR 179
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase,
chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1
d.241.2.1 d.26.1.1 PDB: 1l1p_A
Length = 392
Score = 29.2 bits (66), Expect = 3.4
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 19/77 (24%)
Query: 207 NNKLDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWR-------------QLIL 253
N++ + LI E + RQ+A + GN++ R L+L
Sbjct: 300 ENEIQVPSA-----LIDQEINVLRQQAAQRFGGNVEAAAQLPRELFEEQAKRRVVVGLLL 354
Query: 254 ESLASVEAYIDFSEDEI 270
+ + E+++
Sbjct: 355 GEVIRTHE-LKADEEKV 370
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 28.3 bits (64), Expect = 3.7
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG- 422
+K +++G+ VGKS L+ + + + + I D K +DI G V L DTAG
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62
Query: 423 --LRTTTS 428
RT T+
Sbjct: 63 ERFRTITT 70
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 28.3 bits (64), Expect = 3.7
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILL--DTAG- 422
K +I+G+ VGKS L+ K+ + + ++I G + L DTAG
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 80
Query: 423 --LRTTTS 428
R+ T
Sbjct: 81 ESFRSITR 88
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 29.0 bits (64), Expect = 3.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 370 IVGEPNVGKSSLMNFLCQKQI 390
+VGE +GKS+L+N L +
Sbjct: 36 VVGESGLGKSTLINSLFLTDL 56
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding
domain (RBD), ubiquitin-like fold, A-RAF kinase,
structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Length = 86
Score = 26.9 bits (59), Expect = 3.8
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 372 GEPNVGKSSLMNFLCQKQISIVTSIPGTT-RDVIEKHLDIGGYPVILLDTAGLRTTTSDI 430
G ++ +L KQ ++VT G + D ++K L + G L +
Sbjct: 1 GSSGSSGGTVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKTV 60
Query: 431 IE 432
Sbjct: 61 TA 62
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 29.0 bits (64), Expect = 3.9
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 335 NTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLC 386
N + LH +EK I +SN G R+ VIVG GK+SL LC
Sbjct: 115 NHTMKYIYNLHFMLEK-IRMSNFEGPRV------VIVGGSQTGKTSLSRTLC 159
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 4.0
Identities = 11/62 (17%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 214 QTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWR-QL---ILESLASVEAYIDFSEDE 269
Q + L +L A +++ Q+ + K +L++ Q+ + + + +A+ + +
Sbjct: 94 QRKRLQEL-DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
Query: 270 II 271
II
Sbjct: 153 II 154
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 28.4 bits (64), Expect = 4.1
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILL--DTAG- 422
+K +I+GE VGKSSL+ D K + + G L DTAG
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDP-ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74
Query: 423 --LRTTTS 428
RT T
Sbjct: 75 ERFRTLTP 82
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 28.4 bits (64), Expect = 4.2
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG- 422
K +++G+ VGKS L+ + + I D + +++ G + L DTAG
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 423 --LRTTTS 428
RT TS
Sbjct: 93 ERFRTITS 100
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 28.0 bits (63), Expect = 4.4
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILL--DTAG- 422
++ +I+G VGK+SLM D K +++ G + L DTAG
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCE-ACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85
Query: 423 --LRTTTS 428
+ TS
Sbjct: 86 ERFNSITS 93
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 27.9 bits (63), Expect = 4.4
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG- 422
K +++G+ VGK+ ++ + + T I D + +++ G + L DTAG
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFN-STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67
Query: 423 --LRTTTS 428
RT T+
Sbjct: 68 ERFRTITT 75
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 28.1 bits (63), Expect = 4.5
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILL--DTAG-- 422
K V++G+ VGKS+L++ + + + + S + + L+I G + DTAG
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFN-MDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 423 -LRTTTS 428
R TS
Sbjct: 74 RYRAITS 80
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 28.3 bits (64), Expect = 4.6
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 376 VGKSSLMNFLCQKQISIVTSIPGTTR 401
VGKS+++ L ++ ++ S+ TTR
Sbjct: 31 VGKSTVVRCLRERIPNLHFSVSATTR 56
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 28.5 bits (63), Expect = 4.7
Identities = 5/28 (17%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 369 VIVGEPNVGKS----SLMNFLCQKQISI 392
+ G + GK+ +L+ K +++
Sbjct: 173 LFKGPIDSGKTTLAAALLELCGGKALNV 200
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 27.8 bits (62), Expect = 4.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 366 IKSVIVGEPNVGKSSLM 382
IK V++GE VGKSS++
Sbjct: 4 IKLVLLGEAAVGKSSIV 20
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 28.0 bits (63), Expect = 4.9
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG- 422
K +I+G +VGK+S + + + D K + V L DTAG
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTP-AFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ 82
Query: 423 --LRTTTS 428
RT T+
Sbjct: 83 ERYRTITT 90
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 28.0 bits (63), Expect = 5.0
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILL--DTAG- 422
K V++GE VGK++L++ + + S S + + + +G V DTAG
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSH-DSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 84
Query: 423 --LRTTTS 428
R TS
Sbjct: 85 ERYRAITS 92
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+
protein; 2.10A {Human papillomavirus type 18} SCOP:
c.37.1.20
Length = 212
Score = 27.9 bits (62), Expect = 5.2
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 369 VIVGEPNVGKS----SLMNFLCQKQISIVTS 395
V G N GKS S ++F+ IS V S
Sbjct: 62 VFCGPANTGKSYFGMSFIHFIQGAVISFVNS 92
>2ls8_A C-type lectin domain family 4 member D; structural genomics, NEW
YORK structural genomics research consortium, nysgrc,
PSI-biology, immune system; NMR {Homo sapiens}
Length = 156
Score = 27.8 bits (62), Expect = 5.2
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 148 LDEGLCLWFP-KPNSFTGEDCCEFQVHGS 175
+ W +P++ GE+C +
Sbjct: 81 FNPRRVFWHKNEPDNSQGENCVVLVYNQD 109
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 27.9 bits (63), Expect = 5.6
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 366 IKSVIVGEPNVGKSSLM 382
K +++G+ NVGK+ L
Sbjct: 21 FKIIVIGDSNVGKTCLT 37
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 27.5 bits (62), Expect = 5.8
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG- 422
K +I+G+ VGKSSL+ S + I D + ++I G V L DTAG
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSG-SYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 68
Query: 423 --LRTTTS 428
RT TS
Sbjct: 69 ERFRTITS 76
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 27.5 bits (62), Expect = 5.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 366 IKSVIVGEPNVGKSSLM 382
K V++GE VGK+SL+
Sbjct: 7 FKVVLLGEGCVGKTSLV 23
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 28.3 bits (64), Expect = 5.9
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 8/26 (30%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTS 395
+VG P+VGKS+L +S+V+S
Sbjct: 163 LVGFPSVGKSTL--------LSVVSS 180
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 27.5 bits (62), Expect = 6.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 367 KSVIVGEPNVGKSSLM 382
K V++GE VGKSSL+
Sbjct: 8 KLVLLGESAVGKSSLV 23
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 27.6 bits (62), Expect = 6.1
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILL--DTAG- 422
K V+VG+ +VGK+ ++ S D K L+I G V L DTAG
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSE-RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 423 --LRTTTS 428
RT T
Sbjct: 89 ERFRTITQ 96
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 27.9 bits (62), Expect = 6.1
Identities = 9/16 (56%), Positives = 15/16 (93%)
Query: 367 KSVIVGEPNVGKSSLM 382
K+V++GE +VGKSS++
Sbjct: 9 KTVLLGESSVGKSSIV 24
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 27.6 bits (62), Expect = 6.3
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILL--DTAG- 422
K V++G VGK+ L+ Q D + K ++I G V L DTAG
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85
Query: 423 --LRTTTS 428
R+ T
Sbjct: 86 ERFRSITQ 93
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 27.7 bits (61), Expect = 6.3
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG--TTRDVIEKHLDIGGYPVILLDTA 421
+K +I GEP VGK++L+ + ++ + G T + G+ +I +
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVER---LGKRAIGFWTEEVRDPETKKRTGFRIITTEGK 55
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 28.2 bits (62), Expect = 6.4
Identities = 5/22 (22%), Positives = 16/22 (72%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQI 390
++ G+ + GK+S + +L ++++
Sbjct: 69 LVAGQYSTGKTSFIQYLLEQEV 90
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 27.5 bits (62), Expect = 6.4
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 366 IKSVIVGEPNVGKSSLM 382
+K ++G+ VGKSS+M
Sbjct: 7 LKVCLLGDTGVGKSSIM 23
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 27.7 bits (62), Expect = 6.8
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG- 422
+K +++G+ VGKS L+ + + + + I D K +DI G V L DTAG
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 79
Query: 423 --LRTTTS 428
RT T+
Sbjct: 80 ERFRTITT 87
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 27.9 bits (61), Expect = 6.9
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
+VGE +GKS+L+N L + IPG + IE+ + I V + + T
Sbjct: 42 VVGESGLGKSTLINSLFLTDLYPERVIPGAA-EKIERTVQIEASTVEIEERGVKLRLT-- 98
Query: 430 IIETEG 435
+++T G
Sbjct: 99 VVDTPG 104
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 27.6 bits (62), Expect = 7.5
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 366 IKSVIVGEPNVGKSSLM 382
+K ++G+ VGKSS++
Sbjct: 24 LKVCLLGDTGVGKSSIV 40
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding; 3.00A
{Bovine papillomavirus type 1} PDB: 2gxa_A*
Length = 305
Score = 27.9 bits (62), Expect = 7.5
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 369 VIVGEPNVGKS----SLMNFLCQKQISIVTS 395
+G PN GKS SL++FL +S
Sbjct: 130 AFIGPPNTGKSMLCNSLIHFLGGSVLSFANH 160
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 27.7 bits (62), Expect = 7.7
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 366 IKSVIVGEPNVGKSSLM 382
IK + +G+ VGK++ +
Sbjct: 26 IKLLALGDSGVGKTTFL 42
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K,
phosphoinositide-3-kinase, influenza virus, NS1; 2.30A
{Bos taurus} PDB: 2v1y_B
Length = 170
Score = 27.0 bits (59), Expect = 8.4
Identities = 17/92 (18%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 213 TQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIE 272
TQ ++ + ++ +K + ++ N ++L S I ES +E + + E
Sbjct: 70 TQEKSSKEYLERFRREGNEKEMQRILLNSERLKSR-IAEIHESRTKLEQELRAQASDNRE 128
Query: 273 -DNILNTVRSQVVQLHGSIEKHIELSNKCGVR 303
D +N+++ ++QL ++++ + G R
Sbjct: 129 IDKRMNSLKPDLMQLRKIRDQYLVWLTQKGAR 160
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 27.1 bits (61), Expect = 8.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 367 KSVIVGEPNVGKSSL 381
K V +GE +VGK+SL
Sbjct: 16 KLVFLGEQSVGKTSL 30
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 27.4 bits (60), Expect = 8.5
Identities = 5/21 (23%), Positives = 8/21 (38%), Gaps = 1/21 (4%)
Query: 362 IRSGIKSVIVGEPNVGKSSLM 382
+ + +V GKS L
Sbjct: 28 VAGTV-GALVSPGGAGKSMLA 47
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 27.4 bits (60), Expect = 8.5
Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 363 RSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGY 413
GI +I G P GK+S+ + + +++++ Y
Sbjct: 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHL---EVGKLVKENHFYTEY 55
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 27.6 bits (61), Expect = 8.8
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 9/66 (13%)
Query: 366 IKSVIVGEPNVGKSSLMNFLC-------QKQISIVTSIPGTTRDVIEKHLDIGGYPVILL 418
IK ++G+ GK+SL+ L + Q + + ++ D +
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 419 --DTAG 422
D G
Sbjct: 102 FWDFGG 107
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein;
1.90A {Staphylococcus aureus}
Length = 693
Score = 27.8 bits (63), Expect = 8.9
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 7/52 (13%)
Query: 240 NLKQLYSEWRQLILESLASV-----EAYIDFSEDEIIEDNILNTVRSQVVQL 286
+ E R ++E++A E Y ++EI + +R +
Sbjct: 202 DHLDRAEEARASLIEAVAETSDELMEKY--LGDEEISVSELKEAIRQATTNV 251
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 27.1 bits (61), Expect = 8.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 366 IKSVIVGEPNVGKSSL 381
K V++G+ GKSSL
Sbjct: 13 AKLVLLGDVGAGKSSL 28
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP,
50S subunit, cryo-EM, REAL-space refinement,
ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Length = 704
Score = 27.9 bits (63), Expect = 9.0
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 240 NLKQLYSEWRQLILESLASV-----EAYIDFSEDEIIEDNILNTVRSQVVQL 286
++ +L +EW Q ++ES A E Y +E+ E I +R +V+
Sbjct: 210 DMVELANEWHQNLIESAAEASEELMEKY--LGGEELTEAEIKGALRQRVLNN 259
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 27.2 bits (61), Expect = 9.3
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 366 IKSVIVGEPNVGKSSLM 382
IK + +G+ VGK+S++
Sbjct: 12 IKFLALGDSGVGKTSVL 28
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 27.2 bits (61), Expect = 9.4
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG- 422
K +++G+ VGKS L+ + + I D + +++ G + L DTAG
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 423 --LRTTTS 428
RT TS
Sbjct: 76 ERFRTITS 83
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport,
glutaric acidemia type II; HET: FAD AMP; 2.60A
{Paracoccus denitrificans} SCOP: c.26.2.3
Length = 252
Score = 27.2 bits (61), Expect = 10.0
Identities = 9/15 (60%), Positives = 13/15 (86%)
Query: 125 DQKVSKPRYASLRNI 139
D ++++PRYASL NI
Sbjct: 181 DLRLNEPRYASLPNI 195
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.390
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,546,476
Number of extensions: 397237
Number of successful extensions: 1183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1151
Number of HSP's successfully gapped: 195
Length of query: 445
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 348
Effective length of database: 3,993,456
Effective search space: 1389722688
Effective search space used: 1389722688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)