RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1007
(445 letters)
>d1xzpa3 d.250.1.2 (A:1-117) TrmE formyl-THF-binding domain
{Thermotoga maritima [TaxId: 2336]}
Length = 117
Score = 94.7 bits (235), Expect = 4e-24
Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 99 GKCGVSVIRVSGPDTLNALKSMACYPDQKVSKPRYASLRNIVDPVSEVVLDEGLCLWFPK 158
GK ++++R+SGPD+ ++ + PR A I + +DE + +++
Sbjct: 12 GKGAIAILRLSGPDSWKIVQKH--LRTRSKIVPRKAIHGWIHEN--GEDVDEVVVVFYKS 67
Query: 159 PNSFTGEDCCEFQVHGSIAVINAILGALTKLPGLRPAEPGEFSKRAFFNNK 209
P S+TGED E HG V+ +L K G R AEPGEF+KRAF N K
Sbjct: 68 PKSYTGEDMVEVMCHGGPLVVKKLLDLFLK-SGARMAEPGEFTKRAFLNGK 117
Score = 52.4 bits (125), Expect = 3e-09
Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 29 TIFALSSGHGKCGVSVIRVSGPDTLNALKSMACYPDQKVPKPRYASLRNIVDPVSKVVLD 88
TI A+++ GK ++++R+SGPD+ ++ + PR A I + +D
Sbjct: 3 TIVAVATPPGKGAIAILRLSGPDSWKIVQKH--LRTRSKIVPRKAIHGWIHEN--GEDVD 58
Query: 89 EGLCLWFP-RHGKCGVSVIRVSGPDTLNALKSM 120
E + +++ G ++ V +K +
Sbjct: 59 EVVVVFYKSPKSYTGEDMVEVMCHGGPLVVKKL 91
>d1xzpa1 a.24.25.1 (A:118-211,A:372-450) TrmE connector domain
{Thermotoga maritima [TaxId: 2336]}
Length = 173
Score = 78.7 bits (193), Expect = 7e-18
Identities = 24/137 (17%), Positives = 61/137 (44%), Gaps = 5/137 (3%)
Query: 210 LDLTQTEALGDLIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDE 269
+DLT EA+ DLI+A++E + +L +KG L+ R+ ++E LA + +D+ ++
Sbjct: 1 MDLTSAEAVRDLIEAKSETSLKLSLRNLKGGLRDFVDSLRRELIEVLAEIRVELDYPDEI 60
Query: 270 IIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVICLASVEAYIDFSEDEII 329
V +++ ++ + + ++ ++ + R S + + +++
Sbjct: 61 ETNT---GEVVTRLERIKEKLTEELKKADAGILLNRGQEIFERG--SDSLITNLRQKQLL 115
Query: 330 EDNILNTVRSQVVQLHG 346
E+ + + G
Sbjct: 116 ENVKGHLEDAIKSLKEG 132
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 65.0 bits (157), Expect = 3e-13
Identities = 36/71 (50%), Positives = 52/71 (73%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425
++ VIVG+PNVGKS+L+N L + +IVT IPGTTRDVI + + I G ++DTAG+R+
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60
Query: 426 TTSDIIETEGN 436
T+D++E G
Sbjct: 61 ETNDLVERLGI 71
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 60.4 bits (145), Expect = 2e-11
Identities = 15/61 (24%), Positives = 22/61 (36%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
+VG PN GKSSL+ + + I T + L D G+ S+
Sbjct: 6 LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE 65
Query: 430 I 430
Sbjct: 66 G 66
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 59.6 bits (143), Expect = 4e-11
Identities = 14/63 (22%), Positives = 25/63 (39%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSD 429
+VG P+VGKS+L++ + + I T + G ++ D GL
Sbjct: 6 LVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQ 65
Query: 430 IIE 432
+
Sbjct: 66 GVG 68
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 60.2 bits (145), Expect = 7e-11
Identities = 15/78 (19%), Positives = 34/78 (43%)
Query: 349 EKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHL 408
K +EL + + +++G+ VGKSS +N + +++ ++ +
Sbjct: 16 TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR 75
Query: 409 DIGGYPVILLDTAGLRTT 426
G+ + ++DT GL
Sbjct: 76 SRAGFTLNIIDTPGLIEG 93
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 57.8 bits (138), Expect = 2e-10
Identities = 31/65 (47%), Positives = 42/65 (64%)
Query: 362 IRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTA 421
I IK IVG PNVGKS+L N + K+ ++V+ IPGTTRD ++ + I G + +DTA
Sbjct: 5 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTA 64
Query: 422 GLRTT 426
GLR
Sbjct: 65 GLRRK 69
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 57.4 bits (137), Expect = 2e-10
Identities = 26/56 (46%), Positives = 32/56 (57%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424
IVG PNVGKS+L+N L ++ISI + TTR I G Y I +DT GL
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 64
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 55.9 bits (133), Expect = 4e-10
Identities = 31/57 (54%), Positives = 42/57 (73%)
Query: 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTA 421
G+K VI G PN GKSSL+N L ++ +IVT I GTTRDV+ +H+ I G P+ ++DTA
Sbjct: 1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTA 57
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 53.6 bits (128), Expect = 2e-08
Identities = 20/118 (16%), Positives = 44/118 (37%), Gaps = 16/118 (13%)
Query: 324 SEDEIIEDNILNTVRSQ-----VVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGK 378
+ +II ILN + + + + +I ++ + + + + GE GK
Sbjct: 16 TGRKIISQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNV------AVTGETGSGK 69
Query: 379 SSLMNFLC----QKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTTTSDIIE 432
SS +N L +++ + T + T + + V+ D G+ +T
Sbjct: 70 SSFINTLRGIGNEEEGAAKTGVVEVTMERHP-YKHPNIPNVVFWDLPGIGSTNFPPDT 126
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 51.3 bits (121), Expect = 2e-08
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 361 RIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPV 415
+ SG IVG+PNVGKS+L+N L +++ ++ P TTR + L G +
Sbjct: 2 KTYSGF-VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQI 55
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 49.0 bits (115), Expect = 1e-07
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
+IVG PNVGKS+L N L +K+ +IV G T
Sbjct: 4 LIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVT 35
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 48.5 bits (114), Expect = 2e-07
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKH 407
+ G NVGKS+L+ L K++ PG TR +IE
Sbjct: 4 IFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKIIEIE 41
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 48.9 bits (116), Expect = 3e-07
Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 14/138 (10%)
Query: 306 SGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSG 365
+ +++V+ + ++ Y + ++ E + + +V+ IE + G
Sbjct: 40 NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYL----KG 95
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSI-------PGTTRDVIEKHLDIGGYPVILL 418
S + G VGKSSL+N + V+ + TT D GGY ++
Sbjct: 96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGY---VV 152
Query: 419 DTAGLRTTTSDIIETEGN 436
DT G + IE E
Sbjct: 153 DTPGFANLEINDIEPEEL 170
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 47.1 bits (111), Expect = 6e-07
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
+K +++G+ VGKS L+ + + + I D K +DI G V L DTAG
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 60
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 47.1 bits (110), Expect = 9e-07
Identities = 15/55 (27%), Positives = 22/55 (40%)
Query: 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLD 419
GI+ G N GKSS +N L ++ TS +I G ++ L
Sbjct: 16 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLP 70
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 46.0 bits (108), Expect = 2e-06
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
K V++G VGK+ L+ Q D + K ++I G V L DTAG
Sbjct: 6 FKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG 63
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 45.5 bits (107), Expect = 2e-06
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
K +++G+ VGK+ ++ + T I D + +++ G + L DTAG
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAF-NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG 64
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 44.9 bits (105), Expect = 4e-06
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQ-ISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAG 422
K +I+G +VGK+S + S G V + + + + DTAG
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 63
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 44.5 bits (104), Expect = 5e-06
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVIL--LDTAG 422
K ++VG+ VGK+ L+ T I D K LD+ G V L DTAG
Sbjct: 8 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 65
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 45.2 bits (106), Expect = 7e-06
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424
I+++I+G PNVGKS+L+N L +K I+ PG T + G + LLDT G+
Sbjct: 112 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV---GKELELLDTPGIL 168
Query: 425 TTTSDIIETEGNLLEKN 441
+ L
Sbjct: 169 WPKFEDELVGLRLAVTG 185
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 43.7 bits (102), Expect = 9e-06
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 366 IKSVIVGEPNVGKSSLMN-FLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAG 422
+K +I+GE VGKSSL+ F + + G V +D + + DTAG
Sbjct: 8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 65
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 43.6 bits (101), Expect = 1e-05
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 369 VIVGEPNVGKSSLMNFLC-QKQISIVTSIPGTTRDVIEKHLDIGGYPVIL 417
+ G NVGKSS +N L +K ++ +S PG T+ + ++ + V +
Sbjct: 27 ALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDV 76
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 42.3 bits (98), Expect = 4e-05
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDT 420
+I G N GK+SL+ L + P D G V L+D
Sbjct: 7 IIAGPQNSGKTSLLTLLTTDSVR-----PTVVSQEPLSAADYDGSGVTLVDF 53
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 42.4 bits (99), Expect = 4e-05
Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 11/137 (8%)
Query: 306 SGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSG 365
+ I+ +IC+ ++ D + E R+ ++ + K + +
Sbjct: 40 NDIQPIICITKMDLIED-QDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADI-IPHFQD 97
Query: 366 IKSVIVGEPNVGKSSLMNFLC------QKQISIVTSIPGTTRDVIEKHLDIGGYPVILLD 419
+V G+ VGKSSL+N + +IS T +E GG + D
Sbjct: 98 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGL---VAD 154
Query: 420 TAGLRTTTSDIIETEGN 436
T G + IE E
Sbjct: 155 TPGFSSLEFTDIEEEEL 171
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 41.2 bits (95), Expect = 5e-05
Identities = 6/37 (16%), Positives = 17/37 (45%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRD 402
++ +I+G GK++++ L ++ G +
Sbjct: 6 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE 42
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 42.5 bits (99), Expect = 5e-05
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 361 RIRSGIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRD 402
R + +K+ IVG PNVGKS+ + + + + P T D
Sbjct: 6 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATID 47
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 40.1 bits (92), Expect = 1e-04
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
K + +G N GK++L++ L +++ + T
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT 35
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 40.2 bits (93), Expect = 2e-04
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQ-ISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAG 422
K +++G VGKS L+ + S G + LD + + DTAG
Sbjct: 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 64
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 39.3 bits (90), Expect = 3e-04
Identities = 4/29 (13%), Positives = 17/29 (58%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
++ +++G N GK++++ + + ++
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNGEDVDTIS 31
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 38.2 bits (87), Expect = 6e-04
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPV 415
+ V++GE VGKS+L N S+ + D E+ L + G
Sbjct: 5 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESA 53
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 38.1 bits (87), Expect = 6e-04
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAG 422
++ ++VG GK++++ L +I T + ++ + D G
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGG 53
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 38.4 bits (88), Expect = 7e-04
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEK-HLDIGGYPVILLDTAG 422
K +++G GKS L++ +K+ ++ + ++ + + DTAG
Sbjct: 7 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 63
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 37.7 bits (86), Expect = 0.001
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPV 415
+K V+VG+ VGK+ L+ T D + +GG
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQY 57
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 37.8 bits (86), Expect = 0.001
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKH 407
K V +G N GK++L++ L ++ T + +
Sbjct: 14 GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA 55
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 37.4 bits (85), Expect = 0.001
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKH 407
K +++G P VGKS+L + G T D
Sbjct: 3 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVV 43
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 37.3 bits (85), Expect = 0.001
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKH 407
K +IVG N GK++++ ++ + G+ + I +
Sbjct: 16 HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVIN 57
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 37.3 bits (85), Expect = 0.002
Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTA 421
++ +I+G GK++++ L ++ G + L + + D
Sbjct: 18 LRILILGLDGAGKTTILYRLQIGEVVTTKPTIG----FNVETLSYKNLKLNVWDLG 69
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 37.0 bits (84), Expect = 0.002
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQIS--IVTSIPGTTRDVIEKHLDIGGYPVILLDTAG 422
+K +I+G+ VGK+SLM+ + S +I + + DTAG
Sbjct: 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 36.6 bits (83), Expect = 0.002
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQ 389
IK V+VG VGKSS++ C+
Sbjct: 3 IKMVVVGNGAVGKSSMIQRYCKGI 26
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 36.6 bits (83), Expect = 0.002
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQIS 391
++ +VG GK++ +N + Q +
Sbjct: 3 MELTLVGLQYSGKTTFVNVIASGQFN 28
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 36.9 bits (84), Expect = 0.002
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKH 407
+ VG + GK+ L L Q + + + + +
Sbjct: 4 LFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVN 42
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 36.5 bits (83), Expect = 0.003
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTR 401
++ +++G N GK++L+ L + IS +T G
Sbjct: 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI 52
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 36.2 bits (82), Expect = 0.003
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQIS 391
+K +I+G+ VGK+SLMN K+ S
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFS 28
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 35.6 bits (81), Expect = 0.006
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVT-SIPGTTRDVIEKHLDIGGYPVILLDTAG 422
K V++G+ VGKS+L++ + + ++ + S G +D + DTAG
Sbjct: 6 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 62
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 36.1 bits (83), Expect = 0.007
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRD 402
G K IVG PNVGKS+L N L + I + P T +
Sbjct: 2 GFKCGIVGLPNVGKSTLFNALTKAGIEA-ANYPFCTIE 38
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 34.6 bits (78), Expect = 0.009
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQ 389
+K I G VGKS+L+ K+
Sbjct: 3 VKLAIFGRAGVGKSALVVRFLTKR 26
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 35.0 bits (79), Expect = 0.009
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTT 400
++ ++G+ GKSSL++ ++
Sbjct: 6 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQ 40
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 34.6 bits (78), Expect = 0.012
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQ 389
IK V++GE VGKSS++
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSND 27
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 34.6 bits (78), Expect = 0.012
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQ 389
IK V+VG+ VGK+ L+
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNA 29
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 34.2 bits (77), Expect = 0.013
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQ 389
+K ++G+ VGKSS+M +
Sbjct: 5 LKVCLLGDTGVGKSSIMWRFVEDS 28
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 34.1 bits (77), Expect = 0.015
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQ-ISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAG 422
K +I+G+ VGKS L++ +K+ ++ G + + + DTAG
Sbjct: 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 62
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 34.2 bits (77), Expect = 0.015
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQ 389
IK V+VG+ VGK+ L+ +
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNK 27
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 34.1 bits (77), Expect = 0.016
Identities = 15/57 (26%), Positives = 21/57 (36%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAG 422
K V++G VGKS+L E +D + +LDTAG
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 34.1 bits (77), Expect = 0.017
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLR 424
IK + +G+ VGK++ + + I D EK + +
Sbjct: 6 IKLLALGDSGVGKTTFLYRYTDNKF-NPKFITTVGIDFREKRVVYNAQGPNGSSGKAFK 63
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 33.9 bits (76), Expect = 0.018
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQ 389
K V+VG VGKS+L Q
Sbjct: 7 HKLVVVGGGGVGKSALTIQFIQSY 30
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 33.8 bits (76), Expect = 0.018
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 367 KSVIVGEPNVGKSSLMN-FLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAG 422
K V++GE VGKSSL+ F+ + S G LD + DTAG
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 33.9 bits (76), Expect = 0.019
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQ 389
K I+G +VGKSSL + Q
Sbjct: 5 RKIAILGYRSVGKSSLTIQFVEGQ 28
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 34.1 bits (77), Expect = 0.020
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSI 396
+K +++G GKS+ + + S V +
Sbjct: 3 LKLLLLGTGESGKSTFIKQMRIIHGSGVPTT 33
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 34.5 bits (78), Expect = 0.021
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 25/84 (29%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRD------------------------VIE 405
+VG+PNVGKS+ + + I + P TT + E
Sbjct: 5 VVGKPNVGKSTFFSAATLVDVEI-ANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYE 63
Query: 406 KHLDIGGYPVILLDTAGLRTTTSD 429
+ PV ++D AGL +
Sbjct: 64 YRNGLALIPVKMVDVAGLVPGAHE 87
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 33.4 bits (75), Expect = 0.025
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQIS 391
K VIVG+ GK+ L+ + Q
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFP 28
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 33.6 bits (76), Expect = 0.029
Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRTT 426
+ +++G GKS+++ + + T + E + + D G R
Sbjct: 8 RLLLLGAGESGKSTIVKQMRILHVV-------LTSGIFETKFQVDKVNFHMFDVGGQRDE 60
Query: 427 TSDIIETEGN 436
I+ +
Sbjct: 61 RRKWIQCFND 70
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 33.1 bits (74), Expect = 0.031
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQ-ISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAG 422
K +++G+ NVGK+ L C + + G +D + L DTAG
Sbjct: 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 60
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 33.0 bits (74), Expect = 0.033
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQ 389
+ + G VGKSSL+ +
Sbjct: 3 YRVAVFGAGGVGKSSLVLRFVKGT 26
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 33.0 bits (74), Expect = 0.033
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQ 389
K V+VG VGKS+L L Q
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNH 27
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 33.0 bits (74), Expect = 0.033
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQ 389
K V +GE +VGK+SL+
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDS 24
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 33.0 bits (74), Expect = 0.036
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQ 389
K ++VG VGKS+L +
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDE 28
>d1zyma1 a.60.10.1 (A:22-144) Enzyme I of the PEP:sugar
phosphotransferase system HPr-binding (sub)domain
{Escherichia coli [TaxId: 562]}
Length = 123
Score = 32.2 bits (73), Expect = 0.036
Identities = 14/75 (18%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 223 QAETELQR-QKALHQMKGNLKQLYSEWRQLILESLASV-EAYIDFSEDEIIEDNILNTVR 280
Q + E++R + L+ + ++ + E ++ E +I EDE +E I+ ++
Sbjct: 14 QVDQEVERFLSGRAKASAQLETIKTKAGETFGEEKEAIFEGHIMLLEDEELEQEIIALIK 73
Query: 281 SQVVQLHGSIEKHIE 295
+ + + + IE
Sbjct: 74 DKHMTADAAAHEVIE 88
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 33.3 bits (75), Expect = 0.037
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYPVILLDTAGLRT 425
+K +++G GKS+ + + I P T+ + E +I P ++D G R+
Sbjct: 3 VKILLLGAGESGKSTFLKQMR----IIHGQDP--TKGIHEYDFEIKNVPFKMVDVGGQRS 56
Query: 426 TTS 428
Sbjct: 57 ERK 59
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 33.0 bits (74), Expect = 0.037
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQ 389
K +++G+ VGKSSLMN +
Sbjct: 7 FKVILLGDGGVGKSSLMNRYVTNK 30
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 33.1 bits (74), Expect = 0.038
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQ 389
K V+VG+ GK++L++ +
Sbjct: 3 CKIVVVGDSQCGKTALLHVFAKDC 26
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 33.0 bits (74), Expect = 0.041
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPG------TTRDVIEKHLDIGGYP 414
++ +++G GK++++ L Q G T ++V D+GG
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQD 67
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 32.6 bits (73), Expect = 0.041
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQ 389
K V++GE VGK+SL+ C+ +
Sbjct: 5 KVVLLGEGCVGKTSLVLRYCENK 27
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 32.7 bits (73), Expect = 0.046
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQ 389
K V+VG+ GK++ + +
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGE 27
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 32.7 bits (73), Expect = 0.048
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQ 389
+ V+VG VGKS+L Q
Sbjct: 7 RLVVVGGGGVGKSALTIQFIQSY 29
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 32.2 bits (72), Expect = 0.063
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQ 389
K +I+G+ VGKS L+ K+
Sbjct: 5 KYIIIGDTGVGKSCLLLQFTDKR 27
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 32.3 bits (72), Expect = 0.063
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQ 389
K V++G VGKS+L Q
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGI 27
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 32.3 bits (72), Expect = 0.069
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 367 KSVIVGEPNVGKSSLMNFLCQKQ 389
K V+VG+ VGKS+L QK
Sbjct: 6 KLVVVGDGGVGKSALTIQFFQKI 28
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 32.5 bits (73), Expect = 0.088
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVI 404
V+VG + GKSS++ + + S T R +I
Sbjct: 28 VVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLI 63
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 31.8 bits (71), Expect = 0.13
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHL 408
+VG + GKSS++ + S TR + L
Sbjct: 30 AVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQL 68
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 31.4 bits (70), Expect = 0.13
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQIS-IVTSIPGTTR 401
V++G VG+ + N L K IP TTR
Sbjct: 7 VLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTR 40
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 31.5 bits (70), Expect = 0.14
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQISIVT-SIPGTTR 401
V+ G GKS+L+ L Q+ SI S+ TTR
Sbjct: 4 VLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTR 37
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 31.3 bits (70), Expect = 0.15
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQ--ISIVTSIPGTTR 401
++ GKSSL+ L + Q S+ TTR
Sbjct: 6 IVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTR 40
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 30.3 bits (67), Expect = 0.31
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLD 409
V+ G VGKS+++ L ++ ++ S+ TTR +D
Sbjct: 6 VLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVD 46
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 30.3 bits (67), Expect = 0.32
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHL 408
V+VG P GK+ + L + I + +
Sbjct: 6 VMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDM 45
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 29.9 bits (66), Expect = 0.42
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 366 IKSVIVGEPNVGKSSLMNFLCQKQISIVT 394
+K +++G GKS+++ + +
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKIIHEAGTG 31
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 30.0 bits (67), Expect = 0.56
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 370 IVGEPNVGKSSLMNFLCQKQ--ISIVTSIPGTTRDVI---EKHLDIGGYPVILLDTAGLR 424
IVG GKS LMN L K+ S+ +++ T+ + H G+ ++LLDT GL
Sbjct: 37 IVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 96
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 29.4 bits (65), Expect = 0.81
Identities = 7/60 (11%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 349 EKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQ------KQISIVTSIPGTTRD 402
+L + + ++ + G P GKS+ + +++++ P +
Sbjct: 38 ALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVT 97
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 29.3 bits (64), Expect = 0.86
Identities = 9/32 (28%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 361 RIRSGIKSVIVGEPNVGKSSLMNFLCQKQISI 392
+IRS I S ++G + GK++L++ + ++
Sbjct: 2 KIRSPIVS-VLGHVDHGKTTLLDHIRGSAVAS 32
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 28.1 bits (61), Expect = 1.7
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQISIVT 394
I G + GK++L L + +
Sbjct: 9 GIFGHIDHGKTTLSKVLTEIASTSAH 34
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 27.6 bits (60), Expect = 2.0
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 366 IKSVIVGEPNVGKSSLMNFLC 386
+K +I GEP VGK++L+ +
Sbjct: 1 MKIIITGEPGVGKTTLVKKIV 21
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 104
Score = 26.9 bits (59), Expect = 2.0
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 223 QAETELQRQKALHQMKGNLKQLYSEWRQLILESLA 257
E + K L +L++ ++ + + E+ A
Sbjct: 70 HVENITAKMKGLKGKVSDLEKAAAQRKAKLDENSA 104
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 28.1 bits (62), Expect = 2.3
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQISIVTS-IPGTTRDVIEKHLDIG 411
V++GEP VGK++++ L Q+ IV +P + L +G
Sbjct: 47 VLIGEPGVGKTAIVEGLAQR---IVKGDVPEGLKGKRIVSLQMG 87
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 27.7 bits (60), Expect = 2.4
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 362 IRSGIKSVIVGEPNVGKSSLMNFLC 386
+ +G +V GKS L L
Sbjct: 26 MVAGTVGALVSPGGAGKSMLALQLA 50
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 28.0 bits (62), Expect = 2.6
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 312 ICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIE-KHIELSNK-----CGVRIRSG 365
I + +V A+ + E++E + + ++ H+ L + I G
Sbjct: 3 IIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKG 62
Query: 366 IKSVIVGEPNVGKSSLMNFLC 386
I G GK+SL+ +
Sbjct: 63 EMLAITGSTGSGKTSLLMLIL 83
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 27.4 bits (59), Expect = 3.8
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 350 KHIELSN-----KCGVRIRSGIKSVIVGEPNVGKSSLMNFLC 386
+ + + N V + GI ++I+G+ GKSSL++ +
Sbjct: 4 ERVTVKNFRSHSDTVVEFKEGI-NLIIGQNGSGKSSLLDAIL 44
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli
[TaxId: 562]}
Length = 208
Score = 27.1 bits (59), Expect = 3.9
Identities = 15/79 (18%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 221 LIQAETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVR 280
++ E Q ++ + + + E + IL + A+ EA + ++D I + + +
Sbjct: 130 VVDVSPETQLKRTMQRD-----DVTREHVEQILAAQATREARLAVADDVIDNNGAPDAIA 184
Query: 281 SQVVQLHGSIEKHIELSNK 299
S V +LH +++L+++
Sbjct: 185 SDVARLH---AHYLQLASQ 200
>d1o13a_ c.55.5.1 (A:) Hypothetical protein TM1816 {Thermotoga
maritima [TaxId: 2336]}
Length = 107
Score = 26.0 bits (57), Expect = 4.2
Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 365 GIKSVIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLD 409
G + VIV +G+ ++ F + ++ GT +V+ ++L
Sbjct: 64 GAELVIVR--GIGRRAIAAFE-AMGVKVIKGASGTVEEVVNQYLS 105
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 26.7 bits (59), Expect = 4.4
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 369 VIVGEPNVGKS----SLMNFLCQKQISIVTS 395
V G N GKS S ++F+ IS V S
Sbjct: 57 VFCGPANTGKSYFGMSFIHFIQGAVISFVNS 87
>d1rdua_ c.55.5.1 (A:) Hypothetical protein TM1290 {Thermotoga
maritima [TaxId: 2336]}
Length = 116
Score = 26.0 bits (57), Expect = 5.0
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 329 IEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSGIKSVIVGEPNVGKSSLMNFLCQK 388
E + V + + HG+ K ++ GV +I NVG+++ L
Sbjct: 32 TESGNVEVVENTIADAHGTGPKVVQSLVSKGVEY------LIAS--NVGRNA-FETLKAA 82
Query: 389 QISIVTSIPGTTRDVIEKHLD 409
+ + GT ++ I+ +
Sbjct: 83 GVKVYRFEGGTVQEAIDAFSE 103
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 26.2 bits (56), Expect = 5.1
Identities = 10/46 (21%), Positives = 14/46 (30%)
Query: 369 VIVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVIEKHLDIGGYP 414
+ +G P GKS+ K R I H + Y
Sbjct: 6 LTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYK 51
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 26.9 bits (58), Expect = 5.2
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 369 VIVGEPNVGKSSLMNFLCQ-----KQISIVTSIPGTTRDVIEKHLDI 410
V VG GK++L + +++ V G E +D+
Sbjct: 4 VFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDV 50
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 26.7 bits (57), Expect = 5.9
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 350 KHIELSN-----KCGVRIRSGIKSVIVGEPNVGKSSLMNFLC 386
+ + + N V + GI ++I+G+ GKSSL++ +
Sbjct: 4 ERVTVKNFRSHSDTVVEFKEGI-NLIIGQNGSGKSSLLDAIL 44
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 26.4 bits (57), Expect = 6.0
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 369 VIVGEPNVGKSSLMNFLCQK 388
VI G GKS+L+ L +
Sbjct: 5 VISGPSGTGKSTLLKKLFAE 24
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
{Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 462
Score = 26.9 bits (58), Expect = 6.0
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 162 FTGEDCCEFQVHGSIAVINAILGALTK 188
D F + GS N + AL
Sbjct: 78 VYNADKTYFVLGGSSNANNTVTSALVS 104
>d1y71a1 b.34.16.1 (A:4-127) Kinase-associated protein B {Bacillus
cereus [TaxId: 1396]}
Length = 124
Score = 25.6 bits (56), Expect = 7.1
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 231 QKALHQMKGNLKQLYSEWRQLILESLASVE 260
+ AL + + S + + LE+L ++
Sbjct: 90 KLALETQMNSFSEDDSPFAERSLETLQQLK 119
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 26.1 bits (56), Expect = 7.2
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 369 VIVGEPNVGKSSLMNFLCQK 388
GK++L+ L
Sbjct: 6 AFAAWSGTGKTTLLKKLIPA 25
>d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 26.2 bits (57), Expect = 7.8
Identities = 11/123 (8%), Positives = 39/123 (31%), Gaps = 2/123 (1%)
Query: 246 SEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIR 305
+E R I V+ + + + + + + +++ + G
Sbjct: 88 AETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKD 147
Query: 306 SGIKSVICLASVEAYIDFSEDEIIEDNILNTVRSQVVQLHGSIEKHIELSNKCGVRIRSG 365
+ S++A DF + + + ++ + + + + G + G
Sbjct: 148 EALIRKASEISIKAGADFIK--TSTGKVAVNATPESARIMMEVIRDMGVEKTVGFKPAGG 205
Query: 366 IKS 368
+++
Sbjct: 206 VRT 208
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 26.1 bits (56), Expect = 7.8
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 365 GIKSVIVGEPNVGKSSLMNFLCQK 388
G+++V++G P GK + L +
Sbjct: 3 GVRAVLLGPPGAGKGTQAPKLAKN 26
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 25.1 bits (54), Expect = 7.9
Identities = 2/33 (6%), Positives = 12/33 (36%)
Query: 223 QAETELQRQKALHQMKGNLKQLYSEWRQLILES 255
++ ++ + + + E L+ ++
Sbjct: 73 YSDKIKEKVQLIEDRHRKNNEKAQEASVLLRDN 105
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
2336]}
Length = 308
Score = 26.2 bits (56), Expect = 8.3
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 350 KHIELSN------KCGVRIRSGIKSVIVGEPNVGKSSLMNFLC 386
K + L + + + IVG GKS++++ +
Sbjct: 4 KKLYLKGFKSFGRPSLIGFSDRV-TAIVGPNGSGKSNIIDAIK 45
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 26.0 bits (56), Expect = 8.8
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 370 IVGEPNVGKSSLMNFLCQKQISIVTSIPGTTRDVI 404
I G P VGKS+ ++ L + + D
Sbjct: 56 ITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS 90
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 25.9 bits (55), Expect = 9.6
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 369 VIVGEPNVGKSSLMNFLCQK 388
+++G GKSS++ +
Sbjct: 33 LVLGLRRTGKSSIIKIGINE 52
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 25.3 bits (55), Expect = 9.7
Identities = 10/72 (13%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 224 AETELQRQKALHQMKGNLKQLYSEWRQLILESLASVEAYIDFSEDEIIEDNILNTVRSQV 283
+ E++R + L + ++ + E + +D L VR+
Sbjct: 2 SSNEIRRLERLEHL---AEKFRQKASTH-ETWAYGKEQILL-QKDYESAS--LTEVRAL- 53
Query: 284 VQLHGSIEKHIE 295
++ H + E +
Sbjct: 54 LRKHEAFESDLA 65
>d1vpha_ d.273.1.1 (A:) Hypothetical protein SSO2532 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 138
Score = 25.3 bits (55), Expect = 10.0
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 66 KVPKPRYASLRNIVDPVSKVV----LDEGLCLWFPRHGKCGVSV 105
V R L +I D V ++V + G+CL F H +
Sbjct: 10 YVSTARQFELVDITDQVEQIVEKSGIKNGICLIFVAHSTAAIVA 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.390
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,583,822
Number of extensions: 74056
Number of successful extensions: 373
Number of sequences better than 10.0: 1
Number of HSP's gapped: 367
Number of HSP's successfully gapped: 134
Length of query: 445
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 357
Effective length of database: 1,199,356
Effective search space: 428170092
Effective search space used: 428170092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.6 bits)