BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10072
(84 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLNTH 59
++ H+R HTG KPYKC C + AA SS+++ HLRIH D + KC C Y L H
Sbjct: 24 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH 83
Query: 60 I 60
+
Sbjct: 84 L 84
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ H+R H+ E+P+KC CP+ + +SS ++ HLR H
Sbjct: 52 LNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 13 PYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLNTHI 60
P+KC C + + H+R H +K KC C Y LN H+
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL 56
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 25/33 (75%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
H+RTHTGEKPYKC FC + AA +++ YHL H
Sbjct: 23 HLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLNTH 59
+R H RTHTGEKPYKC C + + + H R H K KCP C ++ LN H
Sbjct: 121 LRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLNTH 59
+R H RTHTGEKPY C C + + + + H R H K KCP C ++ +L+TH
Sbjct: 93 LRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH 152
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLNTH 59
+ H RTHTGEKPYKC C + + ++ H R H K KCP C ++ +L H
Sbjct: 37 LAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH 96
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLKV 41
+ H RTHTGEKPYKC C + + ++ H R H K
Sbjct: 149 LHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 10 GEKPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLNTH 59
GEKPY C C + + S ++ H R H K KCP C +KDL H
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH 68
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 6 RTHTGEKPYKCTFCPFTAAHSSTMSYH-LRIHQD--LKVKCPHCAYKCVKQKDLNTHIER 62
RTH+GEKPY+C C S TM H L+ H + K CPHC ++ DL H+ +
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 63 RH 64
+H
Sbjct: 68 QH 69
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
Length = 87
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLNTH 59
++ H RTHTGEKPYKC C + + SS + H R H K KCP C + L+ H
Sbjct: 20 LQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRH 79
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLK 40
++ H RTHTGEKPYKC C + + S +S H R HQ+ K
Sbjct: 48 LQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLNTH 59
EKPYKC C + + SS + H R H K KCP C + DL H
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKH 51
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 1 MRNHIRTHTGEKPYKCTF--CPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLN 57
++ H+RTHTGEKPYKCT+ C + A S ++ H R H K +C C + L
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLA 92
Query: 58 THIER 62
H++R
Sbjct: 93 LHMKR 97
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQD 38
+ H R HTG KP++C C + + S ++ H++ HQ+
Sbjct: 63 LTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVK---CPHCAYKCVKQKDLN 57
+ H +H+GEKPY C C MSYH+R H K C C + LN
Sbjct: 23 LNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLN 82
Query: 58 THIERRH 64
HI++ H
Sbjct: 83 GHIKQVH 89
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 3 NHIRTHTGEKPYKCTF--CPFTAAHSSTMSYHLRIHQDLKVKCPHCAYKCVKQKDLNTHI 60
NHIR HTGEKP+ C F C A S + H R H K C ++ ++ N+
Sbjct: 80 NHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPF--KCEFEGCDRRFANSSD 137
Query: 61 ERRHM 65
++HM
Sbjct: 138 RKKHM 142
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 1 MRNHIRTHTGEKPYKCTF--CPFTAAHSSTMSYHLRIHQDLK 40
++ H RTHTGEKP+KC F C A+SS H+ +H K
Sbjct: 108 LKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 90
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 1 MRNHIRTHTGEKPYKCTF--CPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLN 57
++ H+RTHTGEKPY C + C + A S ++ H R H + +C C + L
Sbjct: 24 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 83
Query: 58 THIER 62
H++R
Sbjct: 84 LHMKR 88
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ H R HTG +P++C C + S ++ H++ H
Sbjct: 54 LTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 89
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 1 MRNHIRTHTGEKPYKCTF--CPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLN 57
++ H+RTHTGEKPY C + C + A S ++ H R H + +C C + L
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 82
Query: 58 THIER 62
H++R
Sbjct: 83 LHMKR 87
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ H R HTG +P++C C + S ++ H++ H
Sbjct: 53 LTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 19/34 (55%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
HIRTHTGEKP+ C C A S H +IH
Sbjct: 52 THIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLNTHIE 61
HIR HTG+KP++C C + S ++ H+R H K C C K + + H +
Sbjct: 24 RHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 19/34 (55%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
HIRTHTGEKP+ C C A S H +IH
Sbjct: 52 THIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLNTHIE 61
HIR HTG+KP++C C + S ++ H+R H K C C K + + H +
Sbjct: 24 RHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ HIRTHTGEKP+ C C A S H +IH
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLNTH 59
+ HIR HTG+KP++C C + S ++ H+R H K C C K + + H
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Query: 60 IE 61
+
Sbjct: 82 TK 83
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ HIRTHTGEKP+ C C A S H +IH
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLNTHIE 61
HIR HTG+KP++C C + S ++ H+R H K C C K + + H +
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 19/34 (55%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
HIRTHTGEKP+ C C A S H +IH
Sbjct: 52 THIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLNTHIE 61
HIR HTG+KP++C C + S ++ H+R H K C C K + + H +
Sbjct: 24 RHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ HIRTHTGEKP+ C C A S H +IH
Sbjct: 49 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLNTH 59
+ HIR HTG+KP++C C + S ++ H+R H K C C K + + H
Sbjct: 21 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 80
Query: 60 IE 61
+
Sbjct: 81 TK 82
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ HIRTHTGEKP+ C C A S H +IH
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLNTH 59
+ HIR HTG+KP++C C + S ++ H+R H K C C K + + H
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Query: 60 IE 61
+
Sbjct: 82 TK 83
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 4 HIRTHTGEKPYKCTF--CPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLNTHI 60
H R HTGEKPY+C F C + S + H R H +K +C C K + L TH
Sbjct: 27 HSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHT 86
Score = 32.0 bits (71), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH---QDLKVKCPHCAYKCVKQKDLN 57
++ H R HTG KP++C C + S + H R H + + P C K + +L
Sbjct: 54 LKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELV 113
Query: 58 TH 59
H
Sbjct: 114 RH 115
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYK 49
+ HIR HTG+KP++C C + ++++ H+R H K C C K
Sbjct: 22 LDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ HIRTHTGEKP+ C C A T + H +IH
Sbjct: 50 LNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIH 85
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ H R HTGEKPYKC C + +S + H RIH
Sbjct: 30 LVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLNTHIERRHMPGDV 69
EKPY C C + SS + H R+H K KC C + L H +R H G
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH-QRIHTSGPS 70
Query: 70 LG 71
G
Sbjct: 71 SG 72
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ HIRTHTGEKP+ C C A T H +IH
Sbjct: 50 LNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIH 85
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYK 49
+ HIR HTG+KP++C C + + ++ H+R H K C C K
Sbjct: 22 LDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domains From Human Krueppel-Like Factor 10
Length = 72
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 1 MRNHIRTHTGEKPYKCTF--CPFTAAHSSTMSYHLRIH 36
++ H RTHTGEKP+ C++ C A S +S H R H
Sbjct: 35 LKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 19/38 (50%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLKV 41
HIRTHTGEKP+ C C A S H I L +
Sbjct: 22 HIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPI 59
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 12 KPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLNTHIERRHMPGDVL 70
KP++C C + S ++ H+R H K C C K + + H + +H+ +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILE 61
Query: 71 GHIQQML 77
++++L
Sbjct: 62 DKVEELL 68
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLR 34
++ HIRTHT +PY CT+C F+ ++ H++
Sbjct: 17 LKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 1 MRNHIRTHTGEKPYKCTF--CPFTAAHSSTMSYHLRIHQ-DLKVKCPH--CAYKCVKQKD 55
++ H HTGEKP++CTF C + + H+RIH D CP C K + +
Sbjct: 50 LKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTN 109
Query: 56 LNTHI 60
L +HI
Sbjct: 110 LKSHI 114
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 1 MRNHIRTHTGEKPYKCTF--CPFTAAHSSTMSYHLRIHQDLK 40
+R H+R HTG++PY C F C A S+ + H+ H K
Sbjct: 80 LRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ H RTHTGEKPYKC C S + H R+H
Sbjct: 34 LSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 12 KPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLNTH 59
+ YKC C + +HSS +S H R H K KC C +++ L H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
HIR HTG+KP++C C + S ++ H+R H
Sbjct: 40 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVK-CPHCAYKCVK-QKDLNTHIE 61
E+P+ C FC T +S +S H R H + + CP C KC + Q ++N H++
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECG-KCFRDQSEVNRHLK 53
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQD 38
+ H R H G +P C C S ++ HL++HQ+
Sbjct: 20 LSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 4 HIRTHTGEKPYKCTF--CPFTAAHSSTMSYHLRIHQDLK 40
H+R HTGEKP+KCTF C + + + HLR H K
Sbjct: 58 HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEK 96
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 1 MRNHIRTHTGEKPYKCTF--CPFTAAHSSTMSYHL-RIHQDLK---VKCPHCAYKCVKQK 54
++ H+R+HTGEKPY C C +++S + H R H + K K P C +
Sbjct: 85 LKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPS 144
Query: 55 DLNTHIERRH 64
L H++ H
Sbjct: 145 SLRKHVKTVH 154
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLK 40
+ +H HTGEKPY+C C + + H RIH K
Sbjct: 33 LASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLNTHI 60
+KPYKC C + + ++ H +H K +C C + + +L TH
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
Of Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHL-RIHQDL 39
+R H R H ++P+KC +C F S +S H+ + H D+
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDM 64
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 27 STMSYHLRIH-QDLKVKCPHCAYKCVKQKDLNTHIERRHMPGDVLG 71
+ + H RIH D KC +C++ + +L+ H+++ H GD+ G
Sbjct: 23 AALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH--GDMSG 66
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 6 RTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQD-----LKVKCPHCAYKCVKQKDLNTHI 60
RTHTGEKPY C+ C T + H + + D C C ++ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 61 ERRHMPGDVLG 71
+ P V G
Sbjct: 68 DNCAGPDGVEG 78
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
M+ H HTGEKP+KC C + SS + H R H
Sbjct: 45 MKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 14 YKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLNTH 59
+ C C + SST+S HL IH D + C +C + ++ D+ H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 48
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLKV-KCPHCAYKCVKQKDLNTH 59
+ H+ H+ +PY C +C S M H IH K KC C + +L TH
Sbjct: 17 LSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76
Query: 60 IERRH 64
R+H
Sbjct: 77 -SRKH 80
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
EKPY+C+ C +H ++S H RIH K P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 45
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 9 TGEKPYKCTFCPFTAAHSSTMSYHLRIHQ 37
+GEKPY C C MSYH+R H
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
EKPYKC C H+S +S H RIH K P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
>pdb|2KVH|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 27
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIH 36
EKP+ C+ CP + S M+ HLR H
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
EKPYKC C + +S ++ H RIH K P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
EKPYKC C + + S+++ H RIH K P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
EKPYKC C +S ++ H RIH +K P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 9 TGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
+GEKPY C C + S + H RIH K+ P
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEKLSGP 41
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
EKPY+C C +H ++++ H R+H K P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
EKPYKC C +S ++ H RIH K P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
EKPY+C C A + ++ H RIH K P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 9 TGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+GEKPY C C SS +S H R+H
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVH 33
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLNTH 59
H RTHT E+PY C C + H IH K KC C + + L H
Sbjct: 36 HERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH 92
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+R+H H+ EKP+KC C S T++ H +H
Sbjct: 61 LRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 1 MRNHIRTHTGEKPYKCTFC 19
+R H+ +HTGE PYKC+ C
Sbjct: 82 LRLHMVSHTGEMPYKCSSC 100
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 32/96 (33%)
Query: 1 MRNHIRTHTGEKPYKCTFCP------------------------FTAA---HSSTMSYHL 33
++ H R HTGEKP++C C FT + + L
Sbjct: 23 LKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMEL 82
Query: 34 RIHQ-----DLKVKCPHCAYKCVKQKDLNTHIERRH 64
R+H ++ KC C+ + +++KDL +H+ + H
Sbjct: 83 RLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 78
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 9 TGEKPYKCTFCPFTAAHSSTMSYHLRIHQD----LKVKCPHCAYKCVKQKDLNTHIERRH 64
+G +C C FT +++++H R H + L+ C C + K + H + H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIH 36
EKPY C C H T+ HLRIH
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIH 34
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 12 KPYKCTFCPFTAAHSSTMSYHLRIHQDLK 40
KPYKC C + +A + ++ HLR H K
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 42 KCPHCAYKCVKQKDLNTHIER 62
KCP C+Y + +LN H+ +
Sbjct: 11 KCPQCSYASAIKANLNVHLRK 31
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 15/34 (44%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
EKPY C C H S + H RIH K P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 1 MRNHIRTHTGEKPYKCTFC 19
++ H R+HT EKPY C C
Sbjct: 18 LKRHYRSHTNEKPYPCGLC 36
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
EKPY C C T + S +S H R H K P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 9 TGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
+G+KP C C T SS +S H RIH K P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKPSGP 41
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
EKPYKC C +S ++ H R+H K P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
E+P+KC C S ++ HLR+H K P
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 9 TGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+GEKPY+C C + + +++ H R+H
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLH 33
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
EKPYKC C + +H R+H K+ P
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
EKPY C C S+ ++ HLR+H + P
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
EKP++C C + + SS ++ H RIH K P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 11 EKPYKCTF--CPFTAAHSSTMSYHLRIHQDLKVKCP 44
EKP+ CT+ C + + S +S H R H +K P
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
EKPY C +C S+ + H RIH K P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 12 KPYKCTFCPFTAAHSSTMSYHLR 34
K Y+C +C F +A SS + H++
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIK 23
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
E+ Y+C+ C ST+S H RIH+ K P
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
EKPYKC C +S+ + H R+H + P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 3 NHIRTHTGEKPYKCTFC 19
H++ HTG KPY+C C
Sbjct: 55 GHMKIHTGIKPYECNIC 71
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLNTHI 60
H+ H G +PY C C + H++IH +K +C CA + + + + H+
Sbjct: 28 HMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 9 TGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
T E P+KC C T +HS+ +S H IH P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENPSGP 43
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQ 37
EKPYKC+ C S T LRIHQ
Sbjct: 10 EKPYKCSDC----GKSFTWKSRLRIHQ 32
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIH 36
EKPY+C C + ++ H+R+H
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVH 34
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
EKPYKC C + H R+H K P
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 12 KPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
KPY+C C + +S ++ H R+H K P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 9 TGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+GEKPY+CT C S + H R H
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTH 33
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
EKP+KC C + ++ HLRIH K P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
+K +KC C T SS+++ H RIH K P
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
EK YKC C + +S +S H +IH K P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
EKPY+C+ C + S + H +IH K P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 9 TGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
+GEKPY C C S + H +H +K P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKPSGP 41
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
EKPYKC C +S ++ H IH K P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 9 TGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+GEKPY C C T + ++ + H ++H
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMH 33
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
Length = 66
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 7 THTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVK---CPHCAYKCVKQKDLNTHIE 61
T GE Y+C C H S H VK CP C + ++ ++ H++
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 7 THTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
+ T EKP++C C + S ++ H IH K P
Sbjct: 6 SGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKPSGP 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.135 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,579,378
Number of Sequences: 62578
Number of extensions: 80549
Number of successful extensions: 453
Number of sequences better than 100.0: 149
Number of HSP's better than 100.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 195
Number of HSP's gapped (non-prelim): 244
length of query: 84
length of database: 14,973,337
effective HSP length: 52
effective length of query: 32
effective length of database: 11,719,281
effective search space: 375016992
effective search space used: 375016992
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)