RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10072
(84 letters)
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 58.3 bits (142), Expect = 2e-13
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 2 RNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVK---CPHCAYKCVKQKDLNT 58
+ RTH+GEKPY+C C S TM H+ V CPHC ++ DL
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGV 63
Query: 59 HIERRH 64
H+ ++H
Sbjct: 64 HLRKQH 69
Score = 39.0 bits (92), Expect = 6e-06
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 1 MRNHIRTHTGE--KPYKCTFCPFTAAHSSTMSYHLR 34
M+ HI E + C C A S + HLR
Sbjct: 31 MKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 24.8 bits (55), Expect = 1.7
Identities = 4/15 (26%), Positives = 7/15 (46%), Gaps = 1/15 (6%)
Query: 1 MRNHIRT-HTGEKPY 14
+ H+R H+ P
Sbjct: 61 LGVHLRKQHSYSGPS 75
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 53.3 bits (129), Expect = 1e-11
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 2 RNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
R H R H ++P+KC +C F S +S H++
Sbjct: 26 RIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 50.6 bits (122), Expect = 2e-10
Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 6 RTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLNTHIERRH 64
+ + P KC+ C ++ + + + H RIH + KC +C++ + +L+ H+ ++
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM-KKF 60
Score = 25.2 bits (56), Expect = 1.1
Identities = 2/16 (12%), Positives = 6/16 (37%)
Query: 2 RNHIRTHTGEKPYKCT 17
H++ G+ +
Sbjct: 54 SKHMKKFHGDMSGPSS 69
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 49.0 bits (118), Expect = 1e-09
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVK---CPHCAYKCVKQKD-LNTH 59
H +H+GEKPY C C MSYH+R H K C C K + D LN H
Sbjct: 26 HKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCG-KGFSRPDHLNGH 84
Query: 60 IERRH 64
I++ H
Sbjct: 85 IKQVH 89
Score = 38.2 bits (90), Expect = 2e-05
Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 8 HTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHC 46
+G C C ++ H H K CP C
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVC 41
Score = 35.9 bits (84), Expect = 1e-04
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 1 MRNHIRTHTGE--KPYKCTFCPFTAAHSSTMSYHL-RIH 36
M H+R+H G KPY C C + ++ H+ ++H
Sbjct: 51 MSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 48.6 bits (116), Expect = 1e-09
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 8 HTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLKV----KCPHCAYKCVKQKDLNTHIERR 63
+G +C C FT +++++H R H + C C + K + H +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 64 H 64
H
Sbjct: 62 H 62
Score = 40.1 bits (94), Expect = 3e-06
Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 3/50 (6%)
Query: 1 MRNHIRTHT---GEKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCPHCA 47
+ H R H + C FC +++ H + P +
Sbjct: 23 LNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQES 72
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 48.2 bits (116), Expect = 3e-09
Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHC 46
H+R HTG KPYKC C + AA SS+++ HLRIH D + KC C
Sbjct: 27 HMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Score = 40.5 bits (96), Expect = 3e-06
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 7 THTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ P+KC C + + H+R H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCH 31
Score = 33.9 bits (79), Expect = 0.001
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 4 HIRTHTGEKPYKC 16
H+R+HTG+
Sbjct: 83 HLRSHTGDSGPSS 95
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 47.9 bits (115), Expect = 3e-09
Identities = 17/45 (37%), Positives = 19/45 (42%)
Query: 2 RNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCPHC 46
HIRTHTGEKP+ C C A S H I L +
Sbjct: 20 TTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKV 64
Score = 25.9 bits (58), Expect = 1.0
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 12 KPYKCTFCPFTAAHSSTMSYHLRIH 36
KP++C C + S ++ H+R H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH 26
Score = 23.6 bits (52), Expect = 7.2
Identities = 2/9 (22%), Positives = 5/9 (55%)
Query: 4 HIRTHTGEK 12
++ GE+
Sbjct: 80 RLKKLVGER 88
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 46.7 bits (112), Expect = 9e-09
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
HIRTHTGEKP+ C C A S H +IH
Sbjct: 53 HIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 44.8 bits (107), Expect = 5e-08
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
HIR HTG+KP++C C + S ++ H+R H
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
Score = 25.9 bits (58), Expect = 0.83
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 11 EKPYKCTF--CPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLNTHI 60
E+PY C C + S +++ H+RIH K +C C + L THI
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
Score = 24.0 bits (53), Expect = 5.5
Identities = 3/11 (27%), Positives = 6/11 (54%)
Query: 2 RNHIRTHTGEK 12
+ H + H +K
Sbjct: 79 KRHTKIHLRQK 89
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 45.2 bits (108), Expect = 1e-08
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ GEKPY C C H T+ HLRIH
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 30.9 bits (71), Expect = 0.004
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 1 MRNHIRTHTGEKPY 14
+++H+R HTG P
Sbjct: 27 LKSHLRIHTGSGPS 40
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 45.2 bits (108), Expect = 4e-08
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 2 RNHIRTHTGEKPYKCT--FCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKD-LN 57
+ H+RTHTGEKPY C C + A S ++ H R H + +C C + + D L
Sbjct: 24 KAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD-RAFSRSDHLA 82
Query: 58 THIERRHM 65
H+ +RH
Sbjct: 83 LHM-KRHF 89
Score = 28.6 bits (65), Expect = 0.086
Identities = 9/29 (31%), Positives = 10/29 (34%)
Query: 8 HTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
T C T SS + HLR H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTH 30
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 44.9 bits (107), Expect = 4e-08
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 4 HIRTHTGEKPYKCTF--CPFTAAHSSTMSYHLRIHQDLKV-KCPHCAYKCVKQKDLNTHI 60
H +HT + PY+C C + S + H ++H K C++ H+
Sbjct: 22 HQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHV 81
Query: 61 ERRH 64
H
Sbjct: 82 AECH 85
Score = 35.3 bits (82), Expect = 3e-04
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 2 RNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLR 34
+ H + H G K C F + H+
Sbjct: 50 KRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVA 82
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 46.4 bits (111), Expect = 4e-08
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 1 MRNHIRTHTGEKPYKCTF--CPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQ---- 53
+ H+R HTGEKP+KCTF C + + + HLR H K C H C K
Sbjct: 55 LVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEH--EGCSKAFSNA 112
Query: 54 KDLNTHIERRH 64
D H R H
Sbjct: 113 SDRAKHQNRTH 123
Score = 37.6 bits (88), Expect = 8e-05
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 4 HIRTHTGEKPYKCTF--CPFTAAHSSTMSYHLRIH 36
RTH+ EKPY C C S++ H++
Sbjct: 119 QNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 34.5 bits (80), Expect = 0.001
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 9/38 (23%)
Query: 6 RTHTGEKPYKCTFC-------PFTAAHSSTMSYHLRIH 36
H K + C + PF A + H+R H
Sbjct: 27 HIHGERKEFVCHWGGCSRELRPFKA--QYMLVVHMRRH 62
Score = 23.7 bits (52), Expect = 8.7
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 10/63 (15%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHL---RIHQDLKV-KCPHC----AYKCVKQK-DLNTHIE 61
E + C + +H+ IH + K C + K + L H+
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM- 59
Query: 62 RRH 64
RRH
Sbjct: 60 RRH 62
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 44.3 bits (106), Expect = 8e-08
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
H+ H+ +PY C +C S M H IH
Sbjct: 20 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH 52
Score = 23.9 bits (53), Expect = 4.7
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 14 YKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHC 46
+ C C + SST+S HL IH D + C +C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYC 35
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 43.7 bits (104), Expect = 1e-07
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Query: 6 RTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVK---CPHCAYKCVKQKD-LNTHIE 61
T GE Y+C C H S H VK CP C K +KD + H+
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCF-KEFTRKDNMTAHV- 60
Query: 62 RRH 64
+
Sbjct: 61 KII 63
Score = 37.5 bits (88), Expect = 2e-05
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 1 MRNHIRT--HTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDL 39
H T K Y C FC M+ H++I +
Sbjct: 26 FCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 43.7 bits (104), Expect = 1e-07
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 2 RNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ RTHTGEKPY C+ C T + H + +
Sbjct: 4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRY 38
Score = 39.8 bits (94), Expect = 4e-06
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 5/48 (10%)
Query: 4 HIRTHTGE----KPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHC 46
H + + + C+ C T +TM+ H V+ +
Sbjct: 34 HFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81
Score = 35.2 bits (82), Expect = 3e-04
Identities = 3/19 (15%), Positives = 4/19 (21%)
Query: 1 MRNHIRTHTGEKPYKCTFC 19
M H G +
Sbjct: 63 MARHADNCAGPDGVEGENS 81
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 43.0 bits (102), Expect = 1e-07
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGEKP++C C + S ++ HLR H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 31.8 bits (73), Expect = 0.003
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 2 RNHIRTHTGEKPYKC 16
H+R+H P
Sbjct: 29 FKHLRSHERTDPSGP 43
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 1e-07
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGEKPY+C+ C +H ++S H RIH
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 31.7 bits (73), Expect = 0.003
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H R H+G+KP +
Sbjct: 31 HQRIHSGKKPSGPS 44
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.0 bits (102), Expect = 1e-07
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + TGEKPYKC C +S+ + H R+H
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 1e-07
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + TGEKPYKC+ C + S + H + H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 32.9 bits (76), Expect = 0.001
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 2 RNHIRTHTGEKPYKCT 17
R H + HTGE+ +
Sbjct: 29 RIHQKCHTGERHSGPS 44
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 1e-07
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGEKPYKC C + + S+++ H RIH
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 31.7 bits (73), Expect = 0.003
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H R HTGEKP +
Sbjct: 31 HQRIHTGEKPSGPS 44
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 44.4 bits (106), Expect = 1e-07
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 2 RNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ H R HTG KP++C C + S + H R H
Sbjct: 55 KRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTH 89
Score = 43.7 bits (104), Expect = 3e-07
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 2 RNHIRTHTGEKPYKCTF--CPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLNT 58
+ H R HTGEKPY+C F C + S + H R H +K +C C K + L T
Sbjct: 25 QMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKT 84
Query: 59 HIERRH 64
H R H
Sbjct: 85 HT-RTH 89
Score = 42.1 bits (100), Expect = 9e-07
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 2 RNHIRTHTGEKPYKCTF--CPFTAAHSSTMSYHLRIH 36
+ H RTHTGEKP+ C + C A S + H +H
Sbjct: 83 KTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 29.4 bits (67), Expect = 0.056
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 9 TGEKPYKCT--FCPFTAAHSSTMSYHLRIH 36
+ ++P+ C C S + H R H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKH 31
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 44.0 bits (105), Expect = 1e-07
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+K + C FC S + H R H
Sbjct: 7 GGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTH 40
Score = 42.8 bits (102), Expect = 4e-07
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 2 RNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
R+H H+ EKP+KC C S T++ H +H
Sbjct: 62 RDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 32.8 bits (76), Expect = 0.003
Identities = 2/14 (14%), Positives = 2/14 (14%)
Query: 4 HIRTHTGEKPYKCT 17
H H
Sbjct: 92 HKTLHMQTSSPTAA 105
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 1e-07
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + TGEKP+KC C + S ++ H +H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 31.3 bits (72), Expect = 0.003
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 4 HIRTHTGEKPYKCT 17
H HT EKP +
Sbjct: 31 HSMVHTAEKPSGPS 44
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 1e-07
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ +GEKPY C C T + S +S H R H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 32.5 bits (75), Expect = 0.001
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 4 HIRTHTGEKPYKCT 17
H RTHTGEKP +
Sbjct: 31 HQRTHTGEKPSGPS 44
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 43.8 bits (104), Expect = 2e-07
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQD 38
H R HTG KP++C C + + S ++ H++ HQ+
Sbjct: 66 HYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 43.0 bits (102), Expect = 3e-07
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 2 RNHIRTHTGEKPYKCTF--CPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKD-LN 57
+ H+RTHTGEKPYKCT+ C + A S ++ H R H K +C C + + D L
Sbjct: 34 KAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN-RSFSRSDHLA 92
Query: 58 THIERRH 64
H+ +RH
Sbjct: 93 LHM-KRH 98
Score = 24.1 bits (53), Expect = 4.6
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 4/35 (11%)
Query: 2 RNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
R H + P C SS + HLR H
Sbjct: 10 LEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTH 40
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 2e-07
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGEKPY+C C +H ++++ H R+H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 31.3 bits (72), Expect = 0.004
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H R H+GEKP +
Sbjct: 31 HQRVHSGEKPSGPS 44
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 2e-07
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + TGEKPYKC C H+S +S H RIH
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 30.9 bits (71), Expect = 0.006
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H R HTGEKP +
Sbjct: 31 HQRIHTGEKPSGPS 44
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 44.6 bits (106), Expect = 2e-07
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 1 MRNHIRTHTGEKPYKCTF--CPFTAAHSSTMSYHLRIH 36
+ NHIR HTGEKP+ C F C A S + H R H
Sbjct: 78 LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH 115
Score = 42.3 bits (100), Expect = 1e-06
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 4 HIRTHTGEKPYKCTF--CPFTAAHSSTMSYHLRIHQDLK 40
H RTHTGEKP+KC F C A+SS H+ +H K
Sbjct: 111 HKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 36.9 bits (86), Expect = 1e-04
Identities = 13/73 (17%), Positives = 20/73 (27%), Gaps = 13/73 (17%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH----------QDLKVKCPHCAYKCVK 52
+ + C T + + H+ + +CP K K
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPRE-GKSFK 73
Query: 53 QK-DLNTHIERRH 64
K L HI R H
Sbjct: 74 AKYKLVNHI-RVH 85
Score = 34.2 bits (79), Expect = 0.002
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 4 HIRTHTGEKPYKCT 17
H+ HT +K +
Sbjct: 141 HMHVHTSDKSGPSS 154
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 42.1 bits (100), Expect = 2e-07
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TG++PY+C C S++ H R H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 32.1 bits (74), Expect = 0.002
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 4 HIRTHTGEKPYKCT 17
H R+HTGEKP +
Sbjct: 31 HRRSHTGEKPSGPS 44
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 42.1 bits (100), Expect = 2e-07
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + TGEKPYKC C + H +H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 32.1 bits (74), Expect = 0.002
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 4 HIRTHTGEKPYKCT 17
H HTGEKP +
Sbjct: 31 HHMVHTGEKPSGPS 44
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 2e-07
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + TGEKPYKC+ C S + H + H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 32.5 bits (75), Expect = 0.001
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 2 RNHIRTHTGEKPYKCT 17
H ++HTGE+ +
Sbjct: 29 HIHQQSHTGERHSGPS 44
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 2e-07
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + TG KPY C C + S+++ H IH
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 31.0 bits (71), Expect = 0.005
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 4 HIRTHTGEKPYKC 16
H HTGEKP
Sbjct: 31 HQVIHTGEKPSGP 43
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 42.1 bits (100), Expect = 2e-07
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + TGEKP+KC C + S ++ H ++H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 32.1 bits (74), Expect = 0.002
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H + HTGEKP +
Sbjct: 31 HHKLHTGEKPSGPS 44
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 42.2 bits (100), Expect = 2e-07
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGEKPY C C + +S + H R+H
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 31.4 bits (72), Expect = 0.003
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H R H+GEKP +
Sbjct: 31 HQRVHSGEKPSGPS 44
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 3e-07
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGEKPYKC C S+++ H H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 3e-07
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGEKPY C C H S + H RIH
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 31.3 bits (72), Expect = 0.003
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H R HTGEKP +
Sbjct: 31 HQRIHTGEKPSGPS 44
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 3e-07
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ G+K +KC C T SS+++ H RIH
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 31.7 bits (73), Expect = 0.003
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H R HTGEKP +
Sbjct: 31 HQRIHTGEKPSGPS 44
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.8 bits (99), Expect = 3e-07
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + GEKPY C+ C + S + H+R H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 33.3 bits (77), Expect = 6e-04
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 4 HIRTHTGEKPYKCT 17
H+RTH+GEKP +
Sbjct: 31 HMRTHSGEKPSGPS 44
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 42.4 bits (101), Expect = 3e-07
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ YKC C + +HSS +S H R H
Sbjct: 9 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 41
Score = 41.7 bits (99), Expect = 6e-07
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
H RTHTGEKPYKC C S + H R+H
Sbjct: 37 HRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 28.9 bits (66), Expect = 0.052
Identities = 6/12 (50%), Positives = 6/12 (50%)
Query: 4 HIRTHTGEKPYK 15
H R HTG P
Sbjct: 65 HHRVHTGSGPSS 76
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 3e-07
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + TG K ++CT C ST+S H +IH
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 31.3 bits (72), Expect = 0.004
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H + HTGEKP +
Sbjct: 31 HQKIHTGEKPSGPS 44
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 41.8 bits (99), Expect = 3e-07
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ GEKPY+C C + ++ H+R+H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 27.9 bits (63), Expect = 0.074
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 4 HIRTHTGEKPY 14
HIR HTG P
Sbjct: 30 HIRVHTGSGPS 40
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 41.8 bits (99), Expect = 3e-07
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ GEK +KC C + +S++ H +H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 32.5 bits (75), Expect = 0.001
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 2 RNHIRTHTGEKPYKCT 17
R H H GEKP +
Sbjct: 29 RLHQNVHVGEKPSGPS 44
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 3e-07
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + TGEK Y C C + + + + H R+H
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 32.1 bits (74), Expect = 0.002
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H R H+GEKP +
Sbjct: 31 HERLHSGEKPSGPS 44
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 42.4 bits (101), Expect = 4e-07
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 2 RNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+H +KPYKC C + + ++ H +H
Sbjct: 6 HHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVH 40
Score = 27.4 bits (62), Expect = 0.18
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 2 RNHIRTHTGEKPY 14
+ H R H+GEKPY
Sbjct: 62 KTHTRIHSGEKPY 74
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 41.7 bits (99), Expect = 4e-07
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + TG KPY C C S + H R H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 32.1 bits (74), Expect = 0.002
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 4 HIRTHTGEKPYKC 16
H RTHTGE
Sbjct: 31 HTRTHTGESGPSS 43
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 4e-07
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + TGE P+ C+ C H + + H +IH
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 31.3 bits (72), Expect = 0.003
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H + HTGE+P +
Sbjct: 31 HQKIHTGERPSGPS 44
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 41.3 bits (98), Expect = 4e-07
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGEKP++C C + + SS ++ H RIH
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 32.1 bits (74), Expect = 0.002
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H R HTGEKP +
Sbjct: 31 HQRIHTGEKPSGPS 44
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 41.4 bits (98), Expect = 4e-07
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + TG+KP++CT C + + H RIH
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 31.4 bits (72), Expect = 0.003
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 4 HIRTHTGEKPYKCT 17
H R HTGEK +
Sbjct: 31 HQRIHTGEKSGPSS 44
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 42.8 bits (102), Expect = 4e-07
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
H+ H G +PY C C + H++IH
Sbjct: 28 HMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Score = 39.3 bits (93), Expect = 1e-05
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
H++ HTG KPY+C C S+H +
Sbjct: 56 HMKIHTGIKPYECNICAKRFMWRD--SFHRHVT 86
Score = 39.0 bits (92), Expect = 2e-05
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 6 RTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHC 46
+G+K Y C C + H S H+ +H L+ C C
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVC 43
Score = 34.7 bits (81), Expect = 5e-04
Identities = 5/27 (18%), Positives = 8/27 (29%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMS 30
H + K Y+ +S S
Sbjct: 82 HRHVTSCTKSYEAAKAEQNTTEASGPS 108
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 42.1 bits (100), Expect = 5e-07
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
H R HTGEKPYKC C + +S + H RIH
Sbjct: 33 HQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 41.3 bits (98), Expect = 9e-07
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
H+GEKPY C C + SS + H R+H
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVH 37
Score = 26.3 bits (59), Expect = 0.52
Identities = 4/11 (36%), Positives = 4/11 (36%)
Query: 4 HIRTHTGEKPY 14
H R HT
Sbjct: 61 HQRIHTSGPSS 71
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 41.3 bits (98), Expect = 5e-07
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGEKPY+C C S + H R H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 32.1 bits (74), Expect = 0.002
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 4 HIRTHTGEKPYKC 16
H RTHTGE
Sbjct: 31 HQRTHTGESGPSS 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.3 bits (98), Expect = 5e-07
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + + EKPYKC C + H R+H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 31.3 bits (72), Expect = 0.003
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 4 HIRTHTGEKPYKCT 17
H R H GEK +
Sbjct: 31 HQRVHMGEKTSGPS 44
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 5e-07
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGEKPY+C C + S+++ H IH
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 31.3 bits (72), Expect = 0.004
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 4 HIRTHTGEKPYKCT 17
H HTG+KP +
Sbjct: 31 HQAIHTGKKPSGPS 44
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 5e-07
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGEKPYKC C + H ++H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 41.4 bits (98), Expect = 5e-07
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + TG KPY C+ C T + S + H R H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 32.5 bits (75), Expect = 0.001
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H R+HTG KP +
Sbjct: 31 HQRSHTGVKPSGPS 44
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 6e-07
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + +GEKP+KC C +S + H R+H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 31.7 bits (73), Expect = 0.003
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 2 RNHIRTHTGEKPYKCT 17
+H R HTGEKP +
Sbjct: 29 HSHQRVHTGEKPSGPS 44
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 41.0 bits (97), Expect = 6e-07
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + +GEKP+KC C +S H R H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 31.8 bits (73), Expect = 0.002
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 2 RNHIRTHTGEKPYKCT 17
+H R+H+GEKP +
Sbjct: 29 YSHQRSHSGEKPSGPS 44
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 6e-07
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGE+ Y+C+ C ST+S H RIH
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 31.3 bits (72), Expect = 0.004
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 4 HIRTHTGEKPYKCT 17
H R H GEKP +
Sbjct: 31 HQRIHRGEKPSGPS 44
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 6e-07
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGEKPY+C+ C + S + H +IH
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 31.4 bits (72), Expect = 0.004
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H + HTGEKP +
Sbjct: 31 HQQIHTGEKPSGPS 44
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 41.0 bits (97), Expect = 6e-07
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ GEKPYKC C + + H+ IH
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 29.4 bits (67), Expect = 0.018
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 1 MRNHIRTHTGEKPY 14
+R H+ HTG P
Sbjct: 27 LRAHVLIHTGSGPS 40
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 41.1 bits (97), Expect = 6e-07
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 3 NHIRTHTGEKPYKCTF--CPFTAAHSSTMSYHLRIH 36
+ + TGEKP+ CT+ C + + S +S H R H
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
Score = 30.7 bits (70), Expect = 0.006
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H R+H+G KP +
Sbjct: 33 HRRSHSGVKPSGPS 46
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 6e-07
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGEKP+ C C + ++ H RIH
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 31.3 bits (72), Expect = 0.004
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H R HTGEKP +
Sbjct: 31 HRRIHTGEKPSGPS 44
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.9 bits (97), Expect = 6e-07
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + +GEKPYKC C +S ++ H RIH
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 31.3 bits (72), Expect = 0.004
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H R HTGEKP +
Sbjct: 31 HWRIHTGEKPSGPS 44
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 43.6 bits (104), Expect = 6e-07
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 2 RNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
R H RTHTGEKPYKC C + + + H R H
Sbjct: 122 RAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH 156
Score = 43.2 bits (103), Expect = 7e-07
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 2 RNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
H RTHTGEKPYKC C + + ++ H R H
Sbjct: 150 HTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 43.2 bits (103), Expect = 8e-07
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 2 RNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
H RTHTGEKPYKC C + + + + H R H
Sbjct: 66 TRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH 100
Score = 43.2 bits (103), Expect = 8e-07
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 2 RNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
GEKPY C C + + S ++ H R H
Sbjct: 10 VAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTH 44
Score = 25.1 bits (56), Expect = 2.6
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 2 RNHIRTHTGEKP 13
H RTHTG+K
Sbjct: 178 NVHQRTHTGKKT 189
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.9 bits (97), Expect = 6e-07
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + TGEKP++C+ C S + H R H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 33.2 bits (77), Expect = 7e-04
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 4 HIRTHTGEKPYKCT 17
H RTHTGEKP +
Sbjct: 31 HQRTHTGEKPSGPS 44
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 6e-07
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGEKPYKC C S ++ H IH
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 7e-07
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + TGEKPYKC C + +S ++ H RIH
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 30.9 bits (71), Expect = 0.004
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H R HTGEKP +
Sbjct: 31 HQRIHTGEKPSGPS 44
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 41.0 bits (97), Expect = 7e-07
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ G PYKC+ C + + + H R+H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 32.1 bits (74), Expect = 0.002
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 4 HIRTHTGEKPYKCT 17
H R HT EKP +
Sbjct: 31 HQRMHTREKPSGPS 44
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 7e-07
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGEKP++C C + + +S + H RIH
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 31.4 bits (72), Expect = 0.004
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 4 HIRTHTGEKPYKCT 17
H R HTGE P +
Sbjct: 31 HQRIHTGENPSGPS 44
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 41.0 bits (97), Expect = 7e-07
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + GE+ ++C+ C +S H RIH
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 28.7 bits (65), Expect = 0.036
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H R HTGEKP +
Sbjct: 31 HRRIHTGEKPSGPS 44
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 8e-07
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + TGEKPY+C C A + ++ H RIH
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 31.3 bits (72), Expect = 0.004
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H R HTGEKP +
Sbjct: 31 HQRIHTGEKPSGPS 44
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 8e-07
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + +GEKPYKC C + +H R+H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 31.7 bits (73), Expect = 0.003
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 4 HIRTHTGEKPYKCT 17
H R HTGEK +
Sbjct: 31 HQRVHTGEKLSGPS 44
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 8e-07
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ GEKPY+C+ C + + S ++ H H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 31.7 bits (73), Expect = 0.002
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 4 HIRTHTGEKPYKCT 17
H THT EKP +
Sbjct: 31 HWITHTREKPSGPS 44
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 8e-07
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGEKPY+C C + ++ H + H
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 31.7 bits (73), Expect = 0.003
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 4 HIRTHTGEKPYKCT 17
H +THTGEKP +
Sbjct: 31 HQKTHTGEKPSGPS 44
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 8e-07
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGEKPY+C+ C + S + H RIH
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 31.0 bits (71), Expect = 0.005
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 4 HIRTHTGEKPYKC 16
H R HTGE P
Sbjct: 31 HQRIHTGENPSGP 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 9e-07
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGE+ Y+C+ C A ST+ H RIH
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 31.7 bits (73), Expect = 0.003
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H R HTGEKP +
Sbjct: 31 HQRIHTGEKPSGPS 44
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 9e-07
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + TGEKPY C C S + H +IH
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 31.7 bits (73), Expect = 0.003
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 4 HIRTHTGEKPYKCT 17
H + HT +KP +
Sbjct: 31 HQKIHTKQKPSGPS 44
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 9e-07
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ +GEKPY C +C S+ + H RIH
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 30.9 bits (71), Expect = 0.005
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H R HTGEKP +
Sbjct: 31 HQRIHTGEKPSGPS 44
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 40.6 bits (96), Expect = 1e-06
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + +GEKPY+C C S + H R H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 29.4 bits (67), Expect = 0.019
Identities = 5/13 (38%), Positives = 5/13 (38%)
Query: 4 HIRTHTGEKPYKC 16
H RTH G
Sbjct: 31 HERTHAGVSGPSS 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 1e-06
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGE+PY CT C S + H +IH
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 31.3 bits (72), Expect = 0.004
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 4 HIRTHTGEKPYKC 16
H + HTGEKP
Sbjct: 31 HQKIHTGEKPSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 1e-06
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGEKPY C C + S ++ H RIH
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 31.7 bits (73), Expect = 0.003
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H R HTGEKP +
Sbjct: 31 HRRIHTGEKPSGPS 44
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 40.2 bits (95), Expect = 1e-06
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGEK YKC C + +S +S H +IH
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 42.1 bits (100), Expect = 1e-06
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 2 RNHIRTHTGEKPYKCTF--CPFTAAHSSTMSYHLRIH 36
+ H HTGEKP++CTF C + + H+RIH
Sbjct: 51 KRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 87
Score = 38.7 bits (91), Expect = 2e-05
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
MR H+ TH G + + C C SS + H +H
Sbjct: 23 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVH 57
Score = 31.7 bits (73), Expect = 0.008
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 2 RNHIRTHTGEKPYK 15
++HI TH K +
Sbjct: 111 KSHILTHAKAKNNQ 124
Score = 29.0 bits (66), Expect = 0.099
Identities = 12/51 (23%), Positives = 15/51 (29%), Gaps = 2/51 (3%)
Query: 11 EKPYKCTF--CPFTAAHSSTMSYHLRIHQDLKVKCPHCAYKCVKQKDLNTH 59
+ C C +S M HL H C C V+ L H
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRH 53
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 1e-06
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + TGEKPY C C S+ ++ HLR+H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 30.6 bits (70), Expect = 0.008
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 4 HIRTHTGEKPYKCT 17
H+R HT E +
Sbjct: 31 HLRVHTQETLSGPS 44
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 1e-06
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGEKPYKC C SS + H +H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 30.6 bits (70), Expect = 0.007
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 4 HIRTHTGEKPYKCT 17
H H+GE+P +
Sbjct: 31 HHSVHSGERPSGPS 44
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 1e-06
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ +GEKPYKC+ C + ++ H RIH
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 39.9 bits (94), Expect = 2e-06
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ +GEK + C C + S + H R+H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 26.4 bits (59), Expect = 0.29
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 4 HIRTHTGEKPYKCT 17
H R H GEK +
Sbjct: 31 HQRVHMGEKCSGPS 44
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 2e-06
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TG KPY+C C + +S ++ H R+H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 31.0 bits (71), Expect = 0.004
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H R HTGEKP +
Sbjct: 31 HQRVHTGEKPSGPS 44
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 2e-06
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGEKP KCT C S + H R H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 31.8 bits (73), Expect = 0.002
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 4 HIRTHTGEKPYKCT 17
H RTH +K +
Sbjct: 31 HQRTHVDDKHSGPS 44
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 40.2 bits (95), Expect = 2e-06
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHL-RIH 36
H R+HT EKPY C C + H +IH
Sbjct: 21 HYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 27.5 bits (62), Expect = 0.14
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 12 KPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKD-LNTHIERRH 64
+ + C C A + H R H + K C C + ++D L H ++ H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCN-RAFTRRDLLIRHAQKIH 54
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 2e-06
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGEKPY+C C S + H +IH
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 30.9 bits (71), Expect = 0.004
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 4 HIRTHTGEKPYKC 16
H + HTGEKP
Sbjct: 31 HQKIHTGEKPSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 2e-06
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ +GEKP++C C +S + H R+H
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 31.0 bits (71), Expect = 0.005
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H R HTGEKP +
Sbjct: 31 HQRVHTGEKPSGPS 44
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 2e-06
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ GEK YKC C + SS + H R+H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 31.3 bits (72), Expect = 0.004
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H R HTGEKP +
Sbjct: 31 HQRVHTGEKPSGPS 44
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 2e-06
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGE PY+C C + + H R H
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 32.5 bits (75), Expect = 0.001
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H RTH GEKP +
Sbjct: 31 HQRTHAGEKPSGPS 44
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 39.5 bits (93), Expect = 2e-06
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + + K ++C C S ++ H RIH
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 27.9 bits (63), Expect = 0.090
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H R HTGEKP +
Sbjct: 31 HQRIHTGEKPSGPS 44
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 2e-06
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ +GE+P+KC C S ++ HLR+H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 31.0 bits (71), Expect = 0.005
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 4 HIRTHTGEKPYKCT 17
H+R H+ EK +
Sbjct: 31 HLRLHSREKSSGPS 44
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 2e-06
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ +GEKP+KC C + ++ HLRIH
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 31.3 bits (72), Expect = 0.004
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 4 HIRTHTGEKPYKCT 17
H+R HTGEKP +
Sbjct: 31 HLRIHTGEKPSGPS 44
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 39.4 bits (93), Expect = 2e-06
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGEKPY+C C + ++ + H R+H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 30.9 bits (71), Expect = 0.006
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H R HTGEKP +
Sbjct: 31 HQRVHTGEKPSGPS 44
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 3e-06
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGEKPYKC C +S ++ H RIH
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 31.0 bits (71), Expect = 0.005
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 4 HIRTHTGEKPYKCT 17
H R HTG KP +
Sbjct: 31 HQRIHTGVKPSGPS 44
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 3e-06
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ +G+KPY+C C T ++ H R+H
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 30.2 bits (69), Expect = 0.010
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 4 HIRTHTGEKPYKC 16
H R HTGE+
Sbjct: 31 HKRVHTGERSSGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 3e-06
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + TGEKPYKC C +S + H IH
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 30.9 bits (71), Expect = 0.005
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 4 HIRTHTGEKPYKCT 17
H HTGEKP +
Sbjct: 31 HRGIHTGEKPSGPS 44
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 3e-06
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TG+KPYKC C +S ++ H IH
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 30.2 bits (69), Expect = 0.009
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 4 HIRTHTGEKPYKCT 17
H HTGEKP +
Sbjct: 31 HRGIHTGEKPSGPS 44
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 3e-06
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGEKPYKC C +S ++ H IH
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 30.5 bits (70), Expect = 0.007
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 4 HIRTHTGEKPYKCT 17
H HTGEKP +
Sbjct: 31 HQLIHTGEKPSGPS 44
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 40.2 bits (95), Expect = 3e-06
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 2 RNHIR-THTGEKPYKCTF--CPFTAAHSSTMSYHLRIHQDLK-VKCPHC 46
+H + H +K + C C + + H+++H D + C
Sbjct: 26 NHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Score = 31.4 bits (72), Expect = 0.006
Identities = 5/30 (16%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 8 HTGEKPYKCTF--CPFTAAHSSTMSYHLRI 35
+G C F C ++ +++H +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKY 31
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 3e-06
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + TGE+P+KC C + S+ + H RIH
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 30.9 bits (71), Expect = 0.005
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H R HTGEKP +
Sbjct: 31 HQRIHTGEKPSGPS 44
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 3e-06
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGEKPYKC C +S ++ H IH
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 30.5 bits (70), Expect = 0.007
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 4 HIRTHTGEKPYKCT 17
H HTGEKP +
Sbjct: 31 HRGIHTGEKPSGPS 44
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 38.8 bits (91), Expect = 4e-06
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 6 RTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+GEKPY C C T + ++ + H ++H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 39.6 bits (93), Expect = 4e-06
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
HIR HTG+KP++C C + S ++ H+R H
Sbjct: 40 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 32.7 bits (75), Expect = 0.002
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 6 RTHTGEKPYKCT--FCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLNTHIER 62
+PY C C + S ++ H+RIH K +C C + L THI R
Sbjct: 12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-R 70
Query: 63 RH 64
H
Sbjct: 71 TH 72
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 4e-06
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGEKPYKC C +S ++ H R+H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 30.6 bits (70), Expect = 0.007
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 4 HIRTHTGEKPYKCT 17
H R HTG KP +
Sbjct: 31 HRRVHTGGKPSGPS 44
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 38.6 bits (91), Expect = 5e-06
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGE PY+C C + + H + H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 29.8 bits (68), Expect = 0.015
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 4 HIRTHTGEKPYKC 16
H +TH+G+
Sbjct: 31 HQKTHSGQSGPSS 43
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 39.3 bits (92), Expect = 5e-06
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 2 RNHIRTHTGEKPYKCTF--CPFTAAHSSTMSYHLRIH 36
+ H RTHTGEKP+ C++ C A S +S H R H
Sbjct: 36 KAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 28.1 bits (63), Expect = 0.11
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 2 RNHIRTHTGEKPYKCTF--CPFTAAHSSTMSYHLRIH 36
+ + + C+ C T SS + H R H
Sbjct: 6 SGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTH 42
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 39.3 bits (91), Expect = 5e-06
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
++ HIRTHT +PY CT+C F+ ++ H++
Sbjct: 17 LKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 28.9 bits (64), Expect = 0.048
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 14 YKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQKDLNTHI 60
Y C C S + H+R H D++ C +C + + +L H+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 41.0 bits (97), Expect = 5e-06
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 4 HIRTHTGEKPYKCT--FCPFTAAHSSTMSYHLRIH 36
H THTGEK + C C + M H
Sbjct: 63 HSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRF 97
Score = 41.0 bits (97), Expect = 6e-06
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 2 RNHIRTHTGEKPYKCT--FCPFTAAHSSTMSYHLRIHQDLKV-KCPHCAYKCVKQK-DLN 57
+ H +HT + PY+C C + S + H ++H K C+ K
Sbjct: 123 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS-FVGKTWTLYL 181
Query: 58 THIERRH 64
H+ H
Sbjct: 182 KHVAECH 188
Score = 39.9 bits (94), Expect = 1e-05
Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 2/36 (5%)
Query: 3 NHIRTHTGEKPYKCTF--CPFTAAHSSTMSYHLRIH 36
K Y C+F C + + HL H
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKH 37
Score = 38.7 bits (91), Expect = 4e-05
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 4 HIRTHTGEKPYKCT--FCPFTAAHSSTMSYHLRIH 36
H+ HTGEKP+ C C ++ H H
Sbjct: 33 HLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 67
Score = 38.0 bits (89), Expect = 6e-05
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 2 RNHIRTHTGEKPYKCTFCPFTA-AHSSTMSYHLRIHQD 38
+ H + H G K C F + + + HQD
Sbjct: 153 KRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQD 190
Score = 35.6 bits (83), Expect = 5e-04
Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 4/40 (10%)
Query: 1 MRNHIRTHTGEK--PYKCTF--CPFTAAHSSTMSYHLRIH 36
M+ H K Y C F C + + H H
Sbjct: 90 MKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 6e-06
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ TGEKP+KC C + ++ H R+H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 31.0 bits (71), Expect = 0.006
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 4 HIRTHTGEKPYKCT 17
H R HTGEKP +
Sbjct: 31 HQRVHTGEKPSGPS 44
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 40.2 bits (95), Expect = 6e-06
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 2 RNHIRTHTGEKPYKCTFCPFTAAHSSTMSYH-LRIH 36
R H+ +HTGE PYKC+ C + H +++H
Sbjct: 83 RLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 39.0 bits (92), Expect = 2e-05
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 8 HTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLK-VKCPHCAYKCVKQK-DLNTH 59
+G +C C + H R H K +CP C KC +K +L H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCG-KCYFRKENLLEH 54
Score = 38.6 bits (91), Expect = 2e-05
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 2 RNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLR---IHQDLKV-KCPHCAYKCVKQK-DL 56
+ H R HTGEKP++C C + H +++ +V C C + +++ +L
Sbjct: 24 KVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQ-ETFRRRMEL 82
Query: 57 NTH 59
H
Sbjct: 83 RLH 85
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 37.9 bits (89), Expect = 9e-06
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ T K Y C C ++ H +IH
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 9e-06
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ +GE+PY C C S + HL+ H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 32.1 bits (74), Expect = 0.002
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 4 HIRTHTGEKPYKCT 17
H++ H EK +
Sbjct: 31 HLKRHFREKSSGPS 44
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 37.9 bits (89), Expect = 1e-05
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 6 RTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+GE PY+C+ C + H R H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTH 33
Score = 32.1 bits (74), Expect = 0.002
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 4 HIRTHTGEKPYKC 16
H RTH GE
Sbjct: 29 HQRTHAGESGPSS 41
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 37.6 bits (88), Expect = 1e-05
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 6 RTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+G++ Y+C C + +++ H RIH
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 27.2 bits (61), Expect = 0.14
Identities = 6/11 (54%), Positives = 6/11 (54%)
Query: 4 HIRTHTGEKPY 14
H R HTG P
Sbjct: 29 HERIHTGSGPS 39
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 37.5 bits (88), Expect = 1e-05
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLR-IH 36
+ + TG+KPY+C C ++++ H R H
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 27.9 bits (63), Expect = 0.077
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 6 RTHTGEKPYKCT 17
HTGEKP +
Sbjct: 34 YYHTGEKPSGPS 45
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 36.5 bits (85), Expect = 3e-05
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
R TG KP++C C + + S ++ H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 36.4 bits (85), Expect = 4e-05
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 6 RTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+GEKP+ C+ C + S + H + H
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 33.3 bits (77), Expect = 6e-04
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 4 HIRTHTGEKPYKCT 17
H +TH EKP +
Sbjct: 29 HQQTHAEEKPSGPS 42
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 36.1 bits (84), Expect = 5e-05
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ GE PY C C + +++ H R
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 26.5 bits (59), Expect = 0.31
Identities = 3/12 (25%), Positives = 5/12 (41%)
Query: 4 HIRTHTGEKPYK 15
H R+ + P
Sbjct: 30 HQRSCSQSGPSS 41
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 35.1 bits (80), Expect = 4e-04
Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 2 RNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLR-----IHQDLKVKCPHCAYKCVKQKDL 56
++ + E Y+C +C F + ++H+ + + C C + + L
Sbjct: 7 HHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDAL 66
Query: 57 NTHIERRH 64
+ H + H
Sbjct: 67 SEHNLKYH 74
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 34.1 bits (79), Expect = 4e-04
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHL-RIHQDLK-VKCPHC 46
+ + + KPY C C + ++ H+ ++H + KC
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 34.9 bits (80), Expect = 4e-04
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 1 MRNHIRTHTGEKPYKCT 17
+ NHIR HTGEK +
Sbjct: 78 LVNHIRVHTGEKSGPSS 94
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 33.7 bits (77), Expect = 4e-04
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + GE P+KC+ C + + H R H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 34.0 bits (77), Expect = 0.001
Identities = 5/44 (11%), Positives = 12/44 (27%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCPHCA 47
+ TG ++C C ++ H+ +
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETD 53
Score = 24.0 bits (51), Expect = 6.6
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLR 34
+ +K KC +C + +S H+
Sbjct: 68 LLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 32.6 bits (73), Expect = 0.005
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCPHCAYKCVKQKDLNTHI 60
+ + C C + S ++ H+R + KV CP C + H+
Sbjct: 62 YLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV-CPVCKKEFTSTDSALDHV 120
Query: 61 ERRH 64
++H
Sbjct: 121 CKKH 124
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 31.6 bits (71), Expect = 0.006
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYH 32
+ H G++ KC+ C ST+S
Sbjct: 9 RQKIHLGDRSQKCSKCGIIFIRRSTLSRR 37
Score = 26.9 bits (59), Expect = 0.36
Identities = 6/42 (14%), Positives = 11/42 (26%)
Query: 3 NHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCP 44
T + K C C + + ++ K P
Sbjct: 29 IRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGP 70
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 29.5 bits (66), Expect = 0.019
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 1 MRNHIRTHTGEKPYKCTFC 19
+ H +H+GEKPY
Sbjct: 28 LNRHKLSHSGEKPYSSGPS 46
Score = 24.1 bits (52), Expect = 2.6
Identities = 6/35 (17%), Positives = 9/35 (25%)
Query: 6 RTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLK 40
+ K C C ++ H H K
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEK 39
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 29.5 bits (65), Expect = 0.024
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 8 HTGEKPYKCTFCPFTAAHSSTMSYHLRIHQ 37
+GEKPY C C MSYH+R H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 28.6 bits (63), Expect = 0.036
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 9 TGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ KPYKC C + +A + ++ HLR H
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKH 32
Score = 24.4 bits (52), Expect = 1.9
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 42 KCPHCAYKCVKQKDLNTHIER 62
KCP C+Y + +LN H+ +
Sbjct: 11 KCPQCSYASAIKANLNVHLRK 31
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 28.6 bits (63), Expect = 0.042
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 8 HTGEKPYKCTFCPFTAAHSSTMSYHLRIHQD 38
+G++P+ C C + + HL++H D
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.9 bits (61), Expect = 0.097
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 7 THTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ EK +KC C T + S ++ H RIH
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 29.4 bits (65), Expect = 0.097
Identities = 6/35 (17%), Positives = 10/35 (28%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQD 38
T + Y+C C + H+ H
Sbjct: 171 LPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGL 205
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 26.3 bits (57), Expect = 0.32
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIH 36
EKP+ C+ CP + S M+ HLR H
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 26.8 bits (59), Expect = 0.51
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + G+ YK +++T Y+L+I+
Sbjct: 76 ISDLRMEDAGD--YKADINTQADPYTTTKRYNLQIY 109
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 26.1 bits (57), Expect = 0.69
Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCPHCAYKCVKQKDLNTHI 60
H T + C C + + H C +C + V KDL TH
Sbjct: 5 SSGHEETECPLRLAVCQHCDLELSI-LKLKEHEDYCGARTELCGNCG-RNVLVKDLKTHP 62
Query: 61 E 61
E
Sbjct: 63 E 63
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 24.4 bits (52), Expect = 1.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 12 KPYKCTFCPFTAAHSSTMSYHLR 34
K Y+C +C F +A SS + H++
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIK 23
Score = 24.0 bits (51), Expect = 2.5
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 42 KCPHCAYKCVKQKDLNTHIERRH 64
+C +C ++ +L THI+ +H
Sbjct: 4 QCQYCEFRSADSSNLKTHIKTKH 26
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 25.4 bits (55), Expect = 1.5
Identities = 9/30 (30%), Positives = 10/30 (33%)
Query: 17 TFCPFTAAHSSTMSYHLRIHQDLKVKCPHC 46
F P T + RI D CP C
Sbjct: 27 NFFPCTCGYQICRFCWHRIRTDENGLCPAC 56
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 25.2 bits (54), Expect = 1.9
Identities = 8/54 (14%), Positives = 14/54 (25%), Gaps = 1/54 (1%)
Query: 12 KPYKCTFC-PFTAAHSSTMSYHLRIHQDLKVKCPHCAYKCVKQKDLNTHIERRH 64
C C + H+ + C HC + + H+ H
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANH 86
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 25.5 bits (55), Expect = 2.0
Identities = 4/35 (11%), Positives = 9/35 (25%)
Query: 2 RNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
H GEK + + + + +
Sbjct: 197 TIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2)
tetramer, riken structural genomics/proteomi initiative,
RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP:
c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Length = 438
Score = 25.2 bits (56), Expect = 2.5
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 6/24 (25%)
Query: 44 PHCAYKCVKQKDLNTHIERRHMPG 67
PH + K+ + R +PG
Sbjct: 267 PHFGFLATKKA----FV--RQLPG 284
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 23.6 bits (50), Expect = 2.8
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 12 KPYKCTFCPFTAAHSSTMSYHLRIH 36
KPY C C A + H+RIH
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIH 26
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 23.3 bits (51), Expect = 3.3
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 4 HIRTHTGEK 12
H RTHTGEK
Sbjct: 23 HKRTHTGEK 31
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.3 bits (49), Expect = 4.6
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 12 KPYKCTFCPFTAAHSSTMSYHLRIHQDLK 40
KP+KC+ C + S + H+ H K
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>3pij_A Beta-fructofuranosidase; five-bladed beta-propeller and
beta-sandwich domains, glycos hydrolase family 32,
probiotic bacteria, fructose; HET: FRU; 1.80A
{Bifidobacterium longum} PDB: 3pig_A*
Length = 526
Score = 24.6 bits (54), Expect = 5.3
Identities = 6/30 (20%), Positives = 9/30 (30%)
Query: 6 RTHTGEKPYKCTFCPFTAAHSSTMSYHLRI 35
R P T A ++ LR+
Sbjct: 433 RQAMANGDRGYRAAPLTDAELASGKLDLRV 462
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 24.2 bits (52), Expect = 5.9
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 7/33 (21%)
Query: 37 QDLKVKCPHCAYKCVKQKDLNTHIERRHMPGDV 69
++ + CP C K I R GDV
Sbjct: 18 LNIVLTCPEC-------KVYPPKIVERFSEGDV 43
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 989
Score = 24.0 bits (52), Expect = 7.6
Identities = 5/7 (71%), Positives = 6/7 (85%)
Query: 69 VLGHIQQ 75
V GH+QQ
Sbjct: 861 VPGHVQQ 867
>3avr_A Lysine-specific demethylase 6A; cupin superfamily,
TRI/dimethyllysine demethylase, oxidoredu structural
protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
PDB: 3avs_A*
Length = 531
Score = 24.0 bits (51), Expect = 7.7
Identities = 10/55 (18%), Positives = 18/55 (32%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCPHCAYKCVKQKDLNTHIERRHM 65
E + C+ C ++ + V C CA K + +E+ M
Sbjct: 456 EPAHYCSICEVEVFDLLFVTNESNSRKTYIVHCQDCARKTSGNLENFVVLEQYKM 510
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 941
Score = 23.9 bits (52), Expect = 7.9
Identities = 4/7 (57%), Positives = 6/7 (85%)
Query: 69 VLGHIQQ 75
+ GH+QQ
Sbjct: 835 IPGHVQQ 841
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 22.4 bits (47), Expect = 8.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 14 YKCTFCPFTAAHSSTMSYHLRIHQD 38
YKC C + S +S H R+H++
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHKN 26
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 787
Score = 23.8 bits (52), Expect = 8.7
Identities = 4/7 (57%), Positives = 6/7 (85%)
Query: 69 VLGHIQQ 75
+ GH+QQ
Sbjct: 656 IPGHVQQ 662
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 23.3 bits (49), Expect = 9.4
Identities = 10/64 (15%), Positives = 15/64 (23%), Gaps = 2/64 (3%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCPHCAYKCVKQKDLNTHI 60
+H R C +C H + K+ C C + H
Sbjct: 32 QGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCLECMRTFKSSFSIWRHQ 89
Query: 61 ERRH 64
H
Sbjct: 90 VEVH 93
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.37.1.5
Length = 121
Score = 23.4 bits (50), Expect = 9.9
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 5/48 (10%)
Query: 10 GEKPYKCTFCPFTAAHSSTMSYHLRIHQDL---KVKCPHC--AYKCVK 52
G + C FC A + H ++ + H Y +K
Sbjct: 12 GRQHTPCLFCDRLFASAEETFSHCKLEHQFNIDSMVHKHGLEFYGYIK 59
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP;
3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Length = 762
Score = 23.8 bits (52), Expect = 9.9
Identities = 6/7 (85%), Positives = 7/7 (100%)
Query: 69 VLGHIQQ 75
VLGH+QQ
Sbjct: 658 VLGHMQQ 664
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 766
Score = 23.8 bits (52), Expect = 9.9
Identities = 4/7 (57%), Positives = 5/7 (71%)
Query: 69 VLGHIQQ 75
GH+QQ
Sbjct: 657 YPGHVQQ 663
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.135 0.450
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,253,553
Number of extensions: 56467
Number of successful extensions: 753
Number of sequences better than 10.0: 1
Number of HSP's gapped: 601
Number of HSP's successfully gapped: 361
Length of query: 84
Length of database: 6,701,793
Length adjustment: 52
Effective length of query: 32
Effective length of database: 5,249,901
Effective search space: 167996832
Effective search space used: 167996832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.0 bits)